Cp4.1LG09g03800 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG09g03800
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
Description60s acidic ribosomal family protein
LocationCp4.1LG09 : 2292289 .. 2295058 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CGCCACTATATAAGGTAATAAGAAGCAGTCAGGAACATCTACTGAACCCTAACTAAACTCTCTCTATCTCTCTCTCGTTCTTTTGCGATTTGCTGTCTGCGAAGGATGAAGATCGTAGCTGCTTATTTGCTCGCCGTTTTGGGAGGCAACTCCAGCCCTTCGGCTAAAGATTTGAAGAATATTCTTGGATCTGGTAAACATCTATTTTGTTTGAATTACGTGAAAGCTAAGTATTTTGATTGATGTCATATTTTTTTTTCCGAAACCAATTTGCAGTTGGAGCTGAAGTTGATGATGAAAGAATCGAGCTTCTGTTGTCTAGCGTTAAGGGCAAGGATGTTACAGAGCTCATTGCTTCCGGAAGAGAAAAACTAGCATCTGTTCCTTCTGGTGGAGGTGCTGCCATGGCAGTTGCCGCTGGAGGCGGTGGGGGTGGTGGTGGTGCCGCCCCAGCTGCCGAAGAGTCAAAGAAAGAGGAGAAGGTTGAAGAGAAGGAAGAATCAGATGATGTAAGCTTCGTTAAACTCTACGAAAATGTTGCTTGGAATTGCCATAAGATTCTTGAGATCATAAACTCAGTTTTATTCGGTAAATCTGTTCTAATTTCTTGTTTGATCGATGTTTTGCAGGACATGGGCTTCAGTCTCTTCGATTAAGTATAATTACAATGTCGAATGTTTTTGTTCAGAGAATTTTCAAGATTTTAGGTTGGATTTTTTGTTATTCACGTGTAGTTTCTTTTAACATTATCGTGGTGTTATGATGAGCCAAATGTTATATTTCGTTTCAGTTGATGAATTTCGTCGTTATTTTAAGCATCTCGTGTTATATGAAAAGAGGAATTGCCGCTATGTCATTAATTTGAATCTTCGAGGCCATTTTGATTTCTTCTCAGTGAAGACCGATCCCTCCCTAGGGGTATGGCTCTCTTCTTACAAGGAGAAATATCAATGGCCGGTAAATTTTCTACCAACATATTTTGATTAATAAAGTTAAATTTTAAATTTGTTATTATGAAATTTTTTGTGTCTGAATGCCTTAATATCTTGTTGCTGCGTGGAAACCTTTAATTTTCTTTGGGATGCAATGATAAATTGTAATTACAAATTAAGGAAGTGAATTTGTATTGGTTATGAACTTACCCACGTAAAAGATCTTGCCAAATAATTAGAAAACAGTTACTGAGATACATTTATTTGATTGGTTACTTGAGCAGGGTCAAGCATAATATTGGGTCACTCTATAAGATTGTTGTATAAATTAAAGCATTTATGGTTTTCTCAATGATAAATTTCTGTTTAAAGTGATTTTTTTTAAAAAAATGAAATAAAAACAATATTTTCTTAAGTTTAAATTAGTGATTTATTATGTATATTAGGAAAAAAAATAAATAAAAAAAAGAAACTCAGGCCAAGATGGAACAAGATCAGGAACAAGGCTCCTCTCCCAATATCGGCATGGGAGAAATTTTTTCGGGCCACTCCCTTTTCGAGCCTAAATGGTTGGGGATTCGGAACTGGAGAAAAATGGACTTTGGATAATGTCTAATTACTTGAACTATGCTTAAAAGTATGAAAGCCTAAGATGACCCAATCAGGTTTTCTTACCAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACCGCTTTAGGTATTAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAAGTTCCATCTATCAATGGATAAGACTTCGGTCTTAGTGTATACAAGTTCTTGAAAGTAAAGGAGCAATAACCAATTTCTTGTTTTATCAGGAGAATGGAAGTAAGAAGTAAAGAATAGGTGAAACAACTCTAAGGAACTCAGAAAGAACTCAGGGAGAGGAATTGTTTTCGTATCCTAGATTCGAAGGAAAAAAGTCCCTTTAAAACTAAGAAAATTCTGGAATAGATTCCACAAAAAACCAGCTATATCCGATCTTGGTTGCTTTTTGAATAGAGTAAACTTCGGATATAAATTTACATTATTTTGTATGATCTCAACTCAAACTAGTTACAAGACATCGATTGGACAAAATTGACATACTGTGAGCAAGTTACATAAACACAACCTACTCGCACAACAAATGGTAGCTAACGAACACGCTAGTTTCCTACACCAAGTATTGAATTTCAACGTACGTTAGAGCATAAATTCGGACAACTTAAACTAAGTAACTTGGACTCGAGTTCTTTTGACCACGCTTTCTTTTCGGGCTGGCACTGAGCATGCAGGAGAAGGCATTGATGAGATCCGAGTCCTCTTCGGTTATTAAAATTTTTGCCTTACTTGGCTCGGCGAGCAGAAGCTTGCCCACGAGGTATCCTGCAATTGACCATGTTTGATATAGGCGTGCTTGTTTTCCAATGAACCTTCCTTTTTTTGTGTCGTAATATTCGGGCCACTTATCTCTAGCCAGACGTCGCTCGGCGATCTCAATGGCTCGTGCTGCAATTTCTGGTCTATCCATCTTTATGCATGCAACTGTGAGCT

mRNA sequence

CGCCACTATATAAGGTAATAAGAAGCAGTCAGGAACATCTACTGAACCCTAACTAAACTCTCTCTATCTCTCTCTCGTTCTTTTGCGATTTGCTGTCTGCGAAGGATGAAGATCGTAGCTGCTTATTTGCTCGCCGTTTTGGGAGGCAACTCCAGCCCTTCGGCTAAAGATTTGAAGAATATTCTTGGATCTGTTGGAGCTGAAGTTGATGATGAAAGAATCGAGCTTCTGTTGTCTAGCGTTAAGGGCAAGGATGTTACAGAGCTCATTGCTTCCGGAAGAGAAAAACTAGCATCTGTTCCTTCTGGTGGAGGTGCTGCCATGGCAGTTGCCGCTGGAGGCGGTGGGGGTGGTGGTGGTGCCGCCCCAGCTGCCGAAGAGTCAAAGAAAGAGGAGAAGGTTGAAGAGAAGGAAGAATCAGATGATGACATGGGCTTCAGTCTCTTCGATTAAGTATAATTACAATGTCGAATGTTTTTGTTCAGAGAATTTTCAAGATTTTAGGTTGGATTTTTTGTTATTCACGTGTAGTTTCTTTTAACATTATCGTGGTGTTATGATGAGCCAAATGTTATATTTCGTTTCAGTTGATGAATTTCGTCGTTATTTTAAGCATCTCGTGTTATATGAAAAGAGGAATTGCCGCTATGTCATTAATTTGAATCTTCGAGGCCATTTTGATTTCTTCTCAGTGAAGACCGATCCCTCCCTAGGGGTATGGCTCTCTTCTTACAAGGAGAAATATCAATGGCCGGAGAATGGAAGTAAGAAGTAAAGAATAGGTGAAACAACTCTAAGGAACTCAGAAAGAACTCAGGGAGAGGAATTGTTTTCGTATCCTAGATTCGAAGGAAAAAAGTCCCTTTAAAACTAAGAAAATTCTGGAATAGATTCCACAAAAAACCAGCTATATCCGATCTTGGTTGCTTTTTGAATAGAGTAAACTTCGGATATAAATTTACATTATTTTGTATGATCTCAACTCAAACTAGTTACAAGACATCGATTGGACAAAATTGACATACTGTGAGCAAGTTACATAAACACAACCTACTCGCACAACAAATGGTAGCTAACGAACACGCTAGTTTCCTACACCAAGTATTGAATTTCAACGTACGTTAGAGCATAAATTCGGACAACTTAAACTAAGTAACTTGGACTCGAGTTCTTTTGACCACGCTTTCTTTTCGGGCTGGCACTGAGCATGCAGGAGAAGGCATTGATGAGATCCGAGTCCTCTTCGGTTATTAAAATTTTTGCCTTACTTGGCTCGGCGAGCAGAAGCTTGCCCACGAGGTATCCTGCAATTGACCATGTTTGATATAGGCGTGCTTGTTTTCCAATGAACCTTCCTTTTTTTGTGTCGTAATATTCGGGCCACTTATCTCTAGCCAGACGTCGCTCGGCGATCTCAATGGCTCGTGCTGCAATTTCTGGTCTATCCATCTTTATGCATGCAACTGTGAGCT

Coding sequence (CDS)

ATGAAGATCGTAGCTGCTTATTTGCTCGCCGTTTTGGGAGGCAACTCCAGCCCTTCGGCTAAAGATTTGAAGAATATTCTTGGATCTGTTGGAGCTGAAGTTGATGATGAAAGAATCGAGCTTCTGTTGTCTAGCGTTAAGGGCAAGGATGTTACAGAGCTCATTGCTTCCGGAAGAGAAAAACTAGCATCTGTTCCTTCTGGTGGAGGTGCTGCCATGGCAGTTGCCGCTGGAGGCGGTGGGGGTGGTGGTGGTGCCGCCCCAGCTGCCGAAGAGTCAAAGAAAGAGGAGAAGGTTGAAGAGAAGGAAGAATCAGATGATGACATGGGCTTCAGTCTCTTCGATTAA

Protein sequence

MKIVAAYLLAVLGGNSSPSAKDLKNILGSVGAEVDDERIELLLSSVKGKDVTELIASGREKLASVPSGGGAAMAVAAGGGGGGGGAAPAAEESKKEEKVEEKEESDDDMGFSLFD
Homology
[Close]
BLAST of Cp4.1LG09g03800 vs. Swiss-Prot
Match: RLA22_ARATH (60S acidic ribosomal protein P2-2 OS=Arabidopsis thaliana GN=RPP2B PE=1 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 1.2e-34
Identity = 83/115 (72.17%), Postives = 96/115 (83.48%), Query Frame = 1 

Query: 1   MKIVAAYLLAVLGGNSSPSAKDLKNILGSVGAEVDDERIELLLSSVKGKDVTELIASGRE 60
           MK+VAAYLLAVL G +SP++ D+K ILGSVGAE +D +IELLL  VKGKD+ ELIA+GRE
Sbjct: 1   MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 61  KLASVPSGGGAAMAVAAGGGGGGGGAAPAAEESKKEEKVEEKEESDDDMGFSLFD 116
           KLASVPSGGG  +AVA+   GGGGG   +A ESKKEEK EEKEESDDDMGFSLF+
Sbjct: 61  KLASVPSGGGGGVAVASATSGGGGGGGASAAESKKEEKKEEKEESDDDMGFSLFE 115

[Close]
BLAST of Cp4.1LG09g03800 vs. Swiss-Prot
Match: RLA21_ARATH (60S acidic ribosomal protein P2-1 OS=Arabidopsis thaliana GN=RPP2A PE=2 SV=2)

HSP 1 Score: 146.0 bits (367), Expect = 2.6e-34
Identity = 87/116 (75.00%), Postives = 99/116 (85.34%), Query Frame = 1 

Query: 1   MKIVAAYLLAVLGGNSSPSAKDLKNILGSVGAEVDDERIELLLSSVKGKDVTELIASGRE 60
           MK+VAA+LLAVL G +SP+  D+K+ILGSVGAE +D +IELLL  VKGKD+ ELIA+GRE
Sbjct: 1   MKVVAAFLLAVLSGKASPTTGDIKDILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 61  KLASVPSGGGAAMAVA-AGGGGGGGGAAPAAEESKKEEKVEEKEESDDDMGFSLFD 116
           KLASVPSGGG  +AVA A  GGGGGG APAA ESKKEEK EEKEESDDDMGFSLF+
Sbjct: 61  KLASVPSGGGGGVAVASATSGGGGGGGAPAA-ESKKEEKKEEKEESDDDMGFSLFE 115

[Close]
BLAST of Cp4.1LG09g03800 vs. Swiss-Prot
Match: RLA2_PARAR (60S acidic ribosomal protein P2 OS=Parthenium argentatum PE=3 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 1.7e-33
Identity = 84/115 (73.04%), Postives = 101/115 (87.83%), Query Frame = 1 

Query: 1   MKIVAAYLLAVLGGNSSPSAKDLKNILGSVGAEVDDERIELLLSSVKGKDVTELIASGRE 60
           MK++AA+LLA+LGGN+SP+ +DLK+IL SVGA+ DD++IELLLS VKGKD+TELIASGRE
Sbjct: 1   MKVIAAFLLALLGGNTSPTDEDLKSILASVGADADDDKIELLLSQVKGKDITELIASGRE 60

Query: 61  KLASVPSGGGAAMAVAAGGGGGGGGAAPAAEESKKEEKVEEKEESDDDMGFSLFD 116
           +LASVPSGGG A+A AAGGGGG   AA AAEE KKEEK E  EESD+++GFSLFD
Sbjct: 61  RLASVPSGGGVAVAAAAGGGGGDAPAA-AAEEPKKEEKSE--EESDEELGFSLFD 112

[Close]
BLAST of Cp4.1LG09g03800 vs. Swiss-Prot
Match: RLA2B_MAIZE (60S acidic ribosomal protein P2B OS=Zea mays GN=RPP2B PE=1 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 7.0e-32
Identity = 80/115 (69.57%), Postives = 100/115 (86.96%), Query Frame = 1 

Query: 1   MKIVAAYLLAVLGGNSSPSAKDLKNILGSVGAEVDDERIELLLSSVKGKDVTELIASGRE 60
           MK++AAYLLAVLGGN+SP+A D+K+IL SVGAE D+E++E LL+ +K KD+TE+IA+GRE
Sbjct: 1   MKVIAAYLLAVLGGNTSPTADDVKSILESVGAEADEEKLEFLLTELKDKDITEVIAAGRE 60

Query: 61  KLASVPSGGGAAMAVAAGGGGGGGGAAPAAEESKKEEKVEEKEESDDDMGFSLFD 116
           +L+SVPSGGG A+ + A     GGGAAP AEE+KKEEKVEEKEESD+DMGFSLFD
Sbjct: 61  RLSSVPSGGG-AIDMGAPAAVAGGGAAP-AEEAKKEEKVEEKEESDEDMGFSLFD 113

[Close]
BLAST of Cp4.1LG09g03800 vs. Swiss-Prot
Match: RLA2A_MAIZE (60S acidic ribosomal protein P2A OS=Zea mays GN=RPP2A PE=1 SV=3)

HSP 1 Score: 136.7 bits (343), Expect = 1.6e-31
Identity = 84/115 (73.04%), Postives = 92/115 (80.00%), Query Frame = 1 

Query: 1   MKIVAAYLLAVLGGNSSPSAKDLKNILGSVGAEVDDERIELLLSSVKGKDVTELIASGRE 60
           MK VAAYLLAVL GN+SPSA DL  IL SVG EVD+E++ELLLS + GKD+TELIA+GRE
Sbjct: 1   MKFVAAYLLAVLAGNASPSADDLTAILESVGCEVDNEKMELLLSQLSGKDITELIAAGRE 60

Query: 61  KLASVPSGGGAAMAVAAGGGGGGGGAAPAAEESKKEEKVEEKEESDDDMGFSLFD 116
           K ASVP GGG     AA      GGAAPAA E+KKEEKVEEKEESDDDMGFSLFD
Sbjct: 61  KFASVPCGGGGVAVAAA--APAAGGAAPAA-EAKKEEKVEEKEESDDDMGFSLFD 112

[Close]
BLAST of Cp4.1LG09g03800 vs. TrEMBL
Match: A0A0A0KRE0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G615230 PE=3 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 5.2e-42
Identity = 103/115 (89.57%), Postives = 110/115 (95.65%), Query Frame = 1 

Query: 1   MKIVAAYLLAVLGGNSSPSAKDLKNILGSVGAEVDDERIELLLSSVKGKDVTELIASGRE 60
           MKIVAAYLLAVLGGNS+PSAKDLK+ILGSVGAEVD+ERI LLLS+VKGKD+TELIASGRE
Sbjct: 1   MKIVAAYLLAVLGGNSNPSAKDLKDILGSVGAEVDEERINLLLSNVKGKDITELIASGRE 60

Query: 61  KLASVPSGGGAAMAVAAGGGGGGGGAAPAAEESKKEEKVEEKEESDDDMGFSLFD 116
           KLASVPSGGGAA+AVAA GGGGGG AAPA  E+KKEEKVEEKEESDDDMGFSLFD
Sbjct: 61  KLASVPSGGGAAVAVAA-GGGGGGAAAPAPAEAKKEEKVEEKEESDDDMGFSLFD 114

[Close]
BLAST of Cp4.1LG09g03800 vs. TrEMBL
Match: S8D2Z2_9LAMI (Uncharacterized protein (Fragment) OS=Genlisea aurea GN=M569_00658 PE=3 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 7.5e-41
Identity = 102/119 (85.71%), Postives = 111/119 (93.28%), Query Frame = 1 

Query: 1   MKIVAAYLLAVLGGNSSPSAKDLKNILGSVGAEVDDERIELLLSSVKGKDVTELIASGRE 60
           MK+VAAYLLAVLGGNSSP+A+DLK+ILGSVGA+ DDERIELLLS VKGKD+TELIASGRE
Sbjct: 3   MKVVAAYLLAVLGGNSSPTAEDLKDILGSVGADADDERIELLLSQVKGKDITELIASGRE 62

Query: 61  KLASVPSGGGAAMAVAA--GGGGGGGG--AAPAAEESKKEEKVEEKEESDDDMGFSLFD 116
           KLASVP+GGG A+AVAA  GGGGGGGG  AAPAA E+KKEEKVEEKEESDDDMGFSLFD
Sbjct: 63  KLASVPAGGGGAVAVAAPVGGGGGGGGAAAAPAAAEAKKEEKVEEKEESDDDMGFSLFD 121

[Close]
BLAST of Cp4.1LG09g03800 vs. TrEMBL
Match: D7SN28_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0061g01600 PE=3 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 2.4e-39
Identity = 97/115 (84.35%), Postives = 106/115 (92.17%), Query Frame = 1 

Query: 1   MKIVAAYLLAVLGGNSSPSAKDLKNILGSVGAEVDDERIELLLSSVKGKDVTELIASGRE 60
           MK++AAYLLAVLGGN+ PSA+DLK+ILGSVGAE DD+RIELLL+ VKGKD+TELIASGRE
Sbjct: 33  MKVIAAYLLAVLGGNTCPSAEDLKDILGSVGAEADDDRIELLLAEVKGKDITELIASGRE 92

Query: 61  KLASVPSGGGAAMAVAAGGGGGGGGAAPAAEESKKEEKVEEKEESDDDMGFSLFD 116
           KLASVPSGGGAA+AVAA   GGGG AAPAA E KKEEKVEEKEESDDDMGFSLFD
Sbjct: 93  KLASVPSGGGAAVAVAA--PGGGGAAAPAAAEPKKEEKVEEKEESDDDMGFSLFD 145

[Close]
BLAST of Cp4.1LG09g03800 vs. TrEMBL
Match: A5AGQ2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_003816 PE=3 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 2.4e-39
Identity = 97/115 (84.35%), Postives = 106/115 (92.17%), Query Frame = 1 

Query: 1   MKIVAAYLLAVLGGNSSPSAKDLKNILGSVGAEVDDERIELLLSSVKGKDVTELIASGRE 60
           MK++AAYLLAVLGGN+ PSA+DLK+ILGSVGAE DD+RIELLL+ VKGKD+TELIASGRE
Sbjct: 1   MKVIAAYLLAVLGGNTCPSAEDLKDILGSVGAEADDDRIELLLAEVKGKDITELIASGRE 60

Query: 61  KLASVPSGGGAAMAVAAGGGGGGGGAAPAAEESKKEEKVEEKEESDDDMGFSLFD 116
           KLASVPSGGGAA+AVAA   GGGG AAPAA E KKEEKVEEKEESDDDMGFSLFD
Sbjct: 61  KLASVPSGGGAAVAVAA--PGGGGAAAPAAAEPKKEEKVEEKEESDDDMGFSLFD 113

[Close]
BLAST of Cp4.1LG09g03800 vs. TrEMBL
Match: A0A0D2P4V1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G008900 PE=3 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 3.2e-39
Identity = 98/115 (85.22%), Postives = 103/115 (89.57%), Query Frame = 1 

Query: 1   MKIVAAYLLAVLGGNSSPSAKDLKNILGSVGAEVDDERIELLLSSVKGKDVTELIASGRE 60
           MK+VAAYLLAVLGGN+SPSA DLK ILGSVGAE DD+RIELLLS VKGKD+TELIASGRE
Sbjct: 69  MKVVAAYLLAVLGGNASPSADDLKVILGSVGAEADDDRIELLLSEVKGKDITELIASGRE 128

Query: 61  KLASVPSGGGAAMAVAAGGGGGGGGAAPAAEESKKEEKVEEKEESDDDMGFSLFD 116
           KLASVPSGGGA    A   GGGGGGAAPAA E+KKEEKVEEKEESDDDMGFSLFD
Sbjct: 129 KLASVPSGGGAVAVAAPAAGGGGGGAAPAA-EAKKEEKVEEKEESDDDMGFSLFD 182

[Close]
BLAST of Cp4.1LG09g03800 vs. TAIR10
Match: AT2G27710.1 (AT2G27710.1 60S acidic ribosomal protein family)

HSP 1 Score: 147.1 bits (370), Expect = 6.5e-36
Identity = 83/115 (72.17%), Postives = 96/115 (83.48%), Query Frame = 1 

Query: 1   MKIVAAYLLAVLGGNSSPSAKDLKNILGSVGAEVDDERIELLLSSVKGKDVTELIASGRE 60
           MK+VAAYLLAVL G +SP++ D+K ILGSVGAE +D +IELLL  VKGKD+ ELIA+GRE
Sbjct: 1   MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 61  KLASVPSGGGAAMAVAAGGGGGGGGAAPAAEESKKEEKVEEKEESDDDMGFSLFD 116
           KLASVPSGGG  +AVA+   GGGGG   +A ESKKEEK EEKEESDDDMGFSLF+
Sbjct: 61  KLASVPSGGGGGVAVASATSGGGGGGGASAAESKKEEKKEEKEESDDDMGFSLFE 115

[Close]
BLAST of Cp4.1LG09g03800 vs. TAIR10
Match: AT3G44590.2 (AT3G44590.2 60S acidic ribosomal protein family)

HSP 1 Score: 135.6 bits (340), Expect = 2.0e-32
Identity = 81/115 (70.43%), Postives = 95/115 (82.61%), Query Frame = 1 

Query: 1   MKIVAAYLLAVLGGNSSPSAKDLKNILGSVGAEVDDERIELLLSSVKGKDVTELIASGRE 60
           MK+ AA+LLAVLGGN++PSA ++K+I+G+VGA+VD E IELLL  V GKD+ ELIASGRE
Sbjct: 1   MKVAAAFLLAVLGGNANPSADNIKDIIGAVGADVDGESIELLLKEVSGKDIAELIASGRE 60

Query: 61  KLASVPSGGGAAMAVAAGGGGGGGGAAPAAEESKKEEKVEEKEESDDDMGFSLFD 116
           KLASVPSGGG A++ AA   GGGG AAPA    KKE K EEKEESDDDMGFSLF+
Sbjct: 61  KLASVPSGGGVAVS-AAPSSGGGGAAAPA---EKKEAKKEEKEESDDDMGFSLFE 111

[Close]
BLAST of Cp4.1LG09g03800 vs. TAIR10
Match: AT2G27720.2 (AT2G27720.2 60S acidic ribosomal protein family)

HSP 1 Score: 134.0 bits (336), Expect = 5.7e-32
Identity = 86/131 (65.65%), Postives = 98/131 (74.81%), Query Frame = 1 

Query: 1   MKIVAAYLLAVLGGNSSPSAKDLKNILGS---------------VGAEVDDERIELLLSS 60
           MK+VAA+LLAVL G +SP+  D+K+ILGS                GAE +D +IELLL  
Sbjct: 1   MKVVAAFLLAVLSGKASPTTGDIKDILGSGIMVLVLDCVVIGDCFGAETEDSQIELLLKE 60

Query: 61  VKGKDVTELIASGREKLASVPSGGGAAMAVA-AGGGGGGGGAAPAAEESKKEEKVEEKEE 116
           VKGKD+ ELIA+GREKLASVPSGGG  +AVA A  GGGGGG APAA ESKKEEK EEKEE
Sbjct: 61  VKGKDLAELIAAGREKLASVPSGGGGGVAVASATSGGGGGGGAPAA-ESKKEEKKEEKEE 120

[Close]
BLAST of Cp4.1LG09g03800 vs. TAIR10
Match: AT5G40040.1 (AT5G40040.1 60S acidic ribosomal protein family)

HSP 1 Score: 114.0 bits (284), Expect = 6.1e-26
Identity = 76/117 (64.96%), Postives = 92/117 (78.63%), Query Frame = 1 

Query: 1   MKIVAAYLLAVLGGNSSPSAKDLKNILGSVGAEVDDERIELLLSSVKGKDVTELIASGRE 60
           MK+VAAYLLA L GN +PS  DLK I+ SVGAE+D E+I+L  S +K +DVTELIA GRE
Sbjct: 1   MKVVAAYLLAKLSGNENPSVADLKKIVESVGAEIDQEKIDLFFSLIKDRDVTELIAVGRE 60

Query: 61  KLASVPSGGGAAMAVAAGGGGGGGGAA-PAAEESKKEEKVEEKEESDDDMG-FSLFD 116
           K+A++ SGGG A+AVA+GGGGG   AA PA+ ESKK+E  EEKEES+DD G  SLFD
Sbjct: 61  KMAALSSGGG-AVAVASGGGGGAAPAAEPASVESKKKE--EEKEESEDDGGMMSLFD 114

[Close]
BLAST of Cp4.1LG09g03800 vs. TAIR10
Match: AT3G28500.1 (AT3G28500.1 60S acidic ribosomal protein family)

HSP 1 Score: 107.5 bits (267), Expect = 5.7e-24
Identity = 69/117 (58.97%), Postives = 86/117 (73.50%), Query Frame = 1 

Query: 1   MKIVAAYLLAVLGGNSSPSAKDLKNILGSVGAEVDDERIELLLSSVKGKDVTELIASGRE 60
           MK++AA+LLA LGGN +P++ DLK IL SVGAE+D+ +I+LL S +K  DVTELIA+GRE
Sbjct: 1   MKVIAAFLLAKLGGNENPTSNDLKKILESVGAEIDETKIDLLFSLIKDHDVTELIAAGRE 60

Query: 61  KLASVPSGGGAAMAVAAGGGGGGGGAAPAAEESKKEEKVEE-KEESDDDMG-FSLFD 116
           K++++ SGG A   VA GGGGG   AA    ESKK  KVEE K+ES DD G   LFD
Sbjct: 61  KMSALSSGGPAVAMVAGGGGGGAASAAEPVAESKK--KVEEVKDESSDDAGMMGLFD 115

[Close]
BLAST of Cp4.1LG09g03800 vs. NCBI nr
Match: gi|659091858|ref|XP_008446770.1| (PREDICTED: 60S acidic ribosomal protein P2-4-like [Cucumis melo])

HSP 1 Score: 180.3 bits (456), Expect = 2.0e-42
Identity = 104/115 (90.43%), Postives = 111/115 (96.52%), Query Frame = 1 

Query: 1   MKIVAAYLLAVLGGNSSPSAKDLKNILGSVGAEVDDERIELLLSSVKGKDVTELIASGRE 60
           MKIVAAYLLAVLGGN+SPSAKDLK+ILGSVGAE+D+ERIELLLS+VKGKDVTELIASGRE
Sbjct: 1   MKIVAAYLLAVLGGNTSPSAKDLKDILGSVGAEIDEERIELLLSNVKGKDVTELIASGRE 60

Query: 61  KLASVPSGGGAAMAVAAGGGGGGGGAAPAAEESKKEEKVEEKEESDDDMGFSLFD 116
           KLASVPSGGGAA+AVAA GGGGGG AAPA  E+KKEEKVEEKEESDDDMGFSLFD
Sbjct: 61  KLASVPSGGGAAVAVAA-GGGGGGAAAPAPAEAKKEEKVEEKEESDDDMGFSLFD 114

[Close]
BLAST of Cp4.1LG09g03800 vs. NCBI nr
Match: gi|449465545|ref|XP_004150488.1| (PREDICTED: 60S acidic ribosomal protein P2-4 [Cucumis sativus])

HSP 1 Score: 178.3 bits (451), Expect = 7.5e-42
Identity = 103/115 (89.57%), Postives = 110/115 (95.65%), Query Frame = 1 

Query: 1   MKIVAAYLLAVLGGNSSPSAKDLKNILGSVGAEVDDERIELLLSSVKGKDVTELIASGRE 60
           MKIVAAYLLAVLGGNS+PSAKDLK+ILGSVGAEVD+ERI LLLS+VKGKD+TELIASGRE
Sbjct: 1   MKIVAAYLLAVLGGNSNPSAKDLKDILGSVGAEVDEERINLLLSNVKGKDITELIASGRE 60

Query: 61  KLASVPSGGGAAMAVAAGGGGGGGGAAPAAEESKKEEKVEEKEESDDDMGFSLFD 116
           KLASVPSGGGAA+AVAA GGGGGG AAPA  E+KKEEKVEEKEESDDDMGFSLFD
Sbjct: 61  KLASVPSGGGAAVAVAA-GGGGGGAAAPAPAEAKKEEKVEEKEESDDDMGFSLFD 114

[Close]
BLAST of Cp4.1LG09g03800 vs. NCBI nr
Match: gi|527209363|gb|EPS74099.1| (hypothetical protein M569_00658, partial [Genlisea aurea])

HSP 1 Score: 174.5 bits (441), Expect = 1.1e-40
Identity = 102/119 (85.71%), Postives = 111/119 (93.28%), Query Frame = 1 

Query: 1   MKIVAAYLLAVLGGNSSPSAKDLKNILGSVGAEVDDERIELLLSSVKGKDVTELIASGRE 60
           MK+VAAYLLAVLGGNSSP+A+DLK+ILGSVGA+ DDERIELLLS VKGKD+TELIASGRE
Sbjct: 3   MKVVAAYLLAVLGGNSSPTAEDLKDILGSVGADADDERIELLLSQVKGKDITELIASGRE 62

Query: 61  KLASVPSGGGAAMAVAA--GGGGGGGG--AAPAAEESKKEEKVEEKEESDDDMGFSLFD 116
           KLASVP+GGG A+AVAA  GGGGGGGG  AAPAA E+KKEEKVEEKEESDDDMGFSLFD
Sbjct: 63  KLASVPAGGGGAVAVAAPVGGGGGGGGAAAAPAAAEAKKEEKVEEKEESDDDMGFSLFD 121

[Close]
BLAST of Cp4.1LG09g03800 vs. NCBI nr
Match: gi|657998699|ref|XP_008391761.1| (PREDICTED: 60S acidic ribosomal protein P2-2-like [Malus domestica])

HSP 1 Score: 171.4 bits (433), Expect = 9.2e-40
Identity = 95/115 (82.61%), Postives = 107/115 (93.04%), Query Frame = 1 

Query: 1   MKIVAAYLLAVLGGNSSPSAKDLKNILGSVGAEVDDERIELLLSSVKGKDVTELIASGRE 60
           MK+VAAYLLAVLGG ++P+A+DLK+ILGSVGAE DD+RI+LLLS VKGKD+TELIASGRE
Sbjct: 1   MKVVAAYLLAVLGGKTTPTAEDLKDILGSVGAEADDDRIQLLLSEVKGKDITELIASGRE 60

Query: 61  KLASVPSGGGAAMAVAAGGGGGGGGAAPAAEESKKEEKVEEKEESDDDMGFSLFD 116
           KLASVP+GGG A+AVAA GGGGG  AAPAA E+KKEEKVEEKEESDDDMGFSLFD
Sbjct: 61  KLASVPAGGGGAVAVAAXGGGGGAAAAPAAAEAKKEEKVEEKEESDDDMGFSLFD 115

[Close]
BLAST of Cp4.1LG09g03800 vs. NCBI nr
Match: gi|720082507|ref|XP_010242613.1| (PREDICTED: 60S acidic ribosomal protein P2-like [Nelumbo nucifera])

HSP 1 Score: 170.6 bits (431), Expect = 1.6e-39
Identity = 98/115 (85.22%), Postives = 106/115 (92.17%), Query Frame = 1 

Query: 1   MKIVAAYLLAVLGGNSSPSAKDLKNILGSVGAEVDDERIELLLSSVKGKDVTELIASGRE 60
           MK++AAYLLAVLGGN+SPSA DLK+ILGSVGAE DD+RIELLLS VKGKD+TELIASGRE
Sbjct: 1   MKVIAAYLLAVLGGNASPSADDLKDILGSVGAEADDDRIELLLSEVKGKDITELIASGRE 60

Query: 61  KLASVPSGGGAAMAVAAGGGGGGGGAAPAAEESKKEEKVEEKEESDDDMGFSLFD 116
           KLASVPSGGGAA+AVAA GGGG   AAPAA E KKEEKVEEKEESD+DMGFSLFD
Sbjct: 61  KLASVPSGGGAAIAVAA-GGGGAAAAAPAAAEPKKEEKVEEKEESDEDMGFSLFD 114

The following BLAST results are available for this feature:
BLAST of Cp4.1LG09g03800 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RLA22_ARATH1.2e-3472.1760S acidic ribosomal protein P2-2 OS=Arabidopsis thaliana GN=RPP2B PE=1 SV=1[more]
RLA21_ARATH2.6e-3475.0060S acidic ribosomal protein P2-1 OS=Arabidopsis thaliana GN=RPP2A PE=2 SV=2[more]
RLA2_PARAR1.7e-3373.0460S acidic ribosomal protein P2 OS=Parthenium argentatum PE=3 SV=1[more]
RLA2B_MAIZE7.0e-3269.5760S acidic ribosomal protein P2B OS=Zea mays GN=RPP2B PE=1 SV=1[more]
RLA2A_MAIZE1.6e-3173.0460S acidic ribosomal protein P2A OS=Zea mays GN=RPP2A PE=1 SV=3[more]
BLAST of Cp4.1LG09g03800 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KRE0_CUCSA5.2e-4289.57Uncharacterized protein OS=Cucumis sativus GN=Csa_5G615230 PE=3 SV=1[more]
S8D2Z2_9LAMI7.5e-4185.71Uncharacterized protein (Fragment) OS=Genlisea aurea GN=M569_00658 PE=3 SV=1[more]
D7SN28_VITVI2.4e-3984.35Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0061g01600 PE=3 SV=... [more]
A5AGQ2_VITVI2.4e-3984.35Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_003816 PE=3 SV=1[more]
A0A0D2P4V1_GOSRA3.2e-3985.22Uncharacterized protein OS=Gossypium raimondii GN=B456_004G008900 PE=3 SV=1[more]
BLAST of Cp4.1LG09g03800 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G27710.16.5e-3672.17 60S acidic ribosomal protein family[more]
AT3G44590.22.0e-3270.43 60S acidic ribosomal protein family[more]
AT2G27720.25.7e-3265.65 60S acidic ribosomal protein family[more]
AT5G40040.16.1e-2664.96 60S acidic ribosomal protein family[more]
AT3G28500.15.7e-2458.97 60S acidic ribosomal protein family[more]
BLAST of Cp4.1LG09g03800 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659091858|ref|XP_008446770.1|2.0e-4290.43PREDICTED: 60S acidic ribosomal protein P2-4-like [Cucumis melo][more]
gi|449465545|ref|XP_004150488.1|7.5e-4289.57PREDICTED: 60S acidic ribosomal protein P2-4 [Cucumis sativus][more]
gi|527209363|gb|EPS74099.1|1.1e-4085.71hypothetical protein M569_00658, partial [Genlisea aurea][more]
gi|657998699|ref|XP_008391761.1|9.2e-4082.61PREDICTED: 60S acidic ribosomal protein P2-2-like [Malus domestica][more]
gi|720082507|ref|XP_010242613.1|1.6e-3985.22PREDICTED: 60S acidic ribosomal protein P2-like [Nelumbo nucifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006414translational elongation
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: INTERPRO
TermDefinition
IPR027534Ribosomal_L12
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006414 translational elongation
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG09g03800.1Cp4.1LG09g03800.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR027534Ribosomal protein L12 familyHAMAPMF_01478Ribosomal_L12_archcoord: 2..115
score: 17
NoneNo IPR availablePANTHERPTHR2114160S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBERcoord: 1..115
score: 2.1
NoneNo IPR availablePFAMPF00428Ribosomal_60scoord: 17..114
score: 1.4

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG09g03800Cucsa.309030Cucumber (Gy14) v1cgycpeB0804
Cp4.1LG09g03800CmaCh18G009390Cucurbita maxima (Rimu)cmacpeB415
Cp4.1LG09g03800CmaCh04G014240Cucurbita maxima (Rimu)cmacpeB700
Cp4.1LG09g03800CmoCh18G009430Cucurbita moschata (Rifu)cmocpeB376
Cp4.1LG09g03800CmoCh04G014990Cucurbita moschata (Rifu)cmocpeB651
Cp4.1LG09g03800Cla020498Watermelon (97103) v1cpewmB031
Cp4.1LG09g03800Csa5G615230Cucumber (Chinese Long) v2cpecuB041
Cp4.1LG09g03800MELO3C012359Melon (DHL92) v3.5.1cpemeB024
Cp4.1LG09g03800ClCG05G021690Watermelon (Charleston Gray)cpewcgB045
Cp4.1LG09g03800CSPI05G26430Wild cucumber (PI 183967)cpecpiB036
Cp4.1LG09g03800Lsi04G001410Bottle gourd (USVL1VR-Ls)cpelsiB032
Cp4.1LG09g03800MELO3C012359.2Melon (DHL92) v3.6.1cpemedB028
Cp4.1LG09g03800CsaV3_7G016210Cucumber (Chinese Long) v3cpecucB0057
Cp4.1LG09g03800CsaV3_5G035580Cucumber (Chinese Long) v3cpecucB0043
Cp4.1LG09g03800Bhi07G000646Wax gourdcpewgoB0055
Cp4.1LG09g03800CsGy6G012450Cucumber (Gy14) v2cgybcpeB709
Cp4.1LG09g03800CsGy5G025900Cucumber (Gy14) v2cgybcpeB581
Cp4.1LG09g03800Carg01912Silver-seed gourdcarcpeB1169
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG09g03800Cp4.1LG01g14310Cucurbita pepo (Zucchini)cpecpeB040
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG09g03800Cucurbita pepo (Zucchini)cpecpeB038
Cp4.1LG09g03800Cucurbita maxima (Rimu)cmacpeB699
Cp4.1LG09g03800Watermelon (Charleston Gray)cpewcgB055
Cp4.1LG09g03800Watermelon (97103) v1cpewmB023
Cp4.1LG09g03800Silver-seed gourdcarcpeB0958
Cp4.1LG09g03800Silver-seed gourdcarcpeB1464