CmoCh04G014990 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G014990
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
Description60S acidic ribosomal P2
LocationCmo_Chr04 : 7668630 .. 7671424 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAGAATCAGAAACCCTACCTCTCGCCGCTATATAATATAATTTGAAGCCGTCGACTTCATTTACGGAACCCTAACTGAACTCTCTCATTTTCCTTCTCCTGATTCCGATTGGCTTCTGGTAAGGATGAAAATCGTAGCTGCTTATTTGCTCGCTGTTTTGGGAGGCAATGCCAGCCCTTCTGCTAAGGATTTGAAGGATATTCTCGGATCTGGTAAAGTCCGCATCTCGCTCTTTCCCCGCTTGTTTATTTTTTCGATTGATCATTAAGGTTTTTAAGGAATTTTTGGTTCGATGTTAGATTTATAGGATTGTTTTGTTATCTAGGTTATTGTTCTTTGATTCGCTTCGTTTCAATTCTTATGTCAAGCTATGGAGTTTCGTTTTTTATGGTTTGTGGTAGCTATTGTTTGTTCTCTCTTCTTTTGTGCTGTTCGGCTTCAAATTTTATTAAATGATTATCGTTTTTTTTTTTTTGGAGTTAATACGTATTTGATTACTGATTGTCTTCATTATTGTCGTGCTTTAACGTGCTTTCTTTTAATAATCAATTTATGCTTGAGAAACAATAGGAAGAATGGCTGTTATCTGTGGCTGGATATGATTAGATTCTAATTATATGTAATTTGTGTCTATCCTACATTTTCTCGGTTGTCTAAGAGAATAGAGCAATTATACTTCAGACTGATTCTTAGGTTTAATTTGATATCCTTTAATTGTTGTTATTTGGAATGCTCATTTTCGATGCTTTTTTATGTTTTGAATCCACAAATCTTTTCTTCTAATGCAATGTTATATGTATGAATTTCATTTATCGCATTTGCTTTGGATATTGAATTACTTGAAAGATTAATATTTCGAATGGTGTCATAATTCTCTTTCCGGAACCAATTTGCAGTTGGAGCGGAAGTTGATGAGGACAAAATCGAGCTTCTGATGTCTAGTGTTAAGGGTAAGGATATTACAGAGCTCATTGCATCCGGAAGAGAAAAGCTAGCATCTGTTCCTTCTGGTGGAGGTGCTGCTGTGGCAGTTGCCGCTGCTGGAGGTGGTGGCGGTGCGGCTGCCCCTGCTGCTGCCGAGTCAAAGAAAGAAGAGAAGGTTGAAGAGAAGGAGGAATCAGACGATGTAAGTTTCTTAAATCTTTGTGAAAATGTTTCTTGGAATTGCATGTTAACAGTCGAAATTCTCACATTATTATTAACCAATGAAAGCAATAATCTGAAAAAAAAATATTCGAGGAAATGCCTAGAGATTCCCCACCTTATGAAACATTAAATGTTTGCCTGTATGGCCGAAAAACCTCACACAGAACAAAACATCTTTTCTTTAATTCACCATCTTTTTAGTTCATGTAATTTCTTCTAACTCCCTGTTTACTGTTTTGCAGGATATGGGCTTCAGTCTTTTCGATTAAGTATAATTACAAAGTCGAATGTTGTTCAGAGATTCTTCAAGATTTTAGATTGGAATTTTTGTTTTCACAAGGTAGTCTTTTTCCAACATTATCCCCGTGTTATGATGAGCCGAATGTCGAATTTCTTCAGTTTATAAATTTAGTCTTAATTTTTTGGATGCTTTAAAACCAAACGCCTTTTTTATTATATCGAAAACAAGGAATTGCTGCTGCTATGGCATGAATTCGAAAAATTGGAGGCCATTGTGAATTTTCTGTTGCAGTTCCCTCCAACAACTAAAGATCATTTGCACAATTAATCAAAAGAAGATTGATACACTTTGGGTGGGGTGTCTTCTCGAGTTCTTTTGGTTCTTCACAAGGAGAAACAGCAAGGACTAATGGTGGATGCCAAAATAAAGGGTAGATTTTCTACCCTTATCTTTAGCTAATAAATCCTAAGCTCTAAAATAAATCAACTAACTACCCTGATCTTTAGGTTTACTAGTCGTAGATACCATTTAAAATGTCAAAATCTCTGATGGGATTGGTTCTTTATTTCTTCACGAACTTCAAAAATTGGTCCTTGGTCAAGTCATCTTACTTGAGCTGTTCAAACAATTGATACACCATACAATCTTTATTTTAATCATTGATATAAATTTACATTATGGTTCTACAGATTCCACCCATGAGGAGGGATAACAAAGCATCGTCAGTTGGCCAAAGTTAAATATGTGTATCTATAATATATATGTGAATAAGGCCGCATAAACTCGACTTACCCACTCAATAAATGGTAGCTAACAAATACGCCACAACTGCCTATATGAAGTATCCAATTTCAATACGTTTAGAGCATAAATTTGGGGAGTAGCAGCCAGCCCCTTGGATCCCAACTCCATATGCACCCACTTCAAAGTAGCGGCTTAATATATAACACCAAGCTTTGTTCTGGGCAACAACCTAAACTATGTAAGTCGGATTTGAGCTTTTCTGACCGCGCTTTCTTTTCGGGCTGGCACTGATCATACAAGAGAAGGCATTGACAAGATCCGAGTCCTCTTCAGTTGTTAACATTTTGGCCTTACTTGGCTCGGCAAGCAGGAGCTTGCTCAAGAGGTATCCTGCAATTGACCATGTTTGATATAGGCGTGCTTGTTTTCCAATGAACCGTCCTTTCCTCGTGTCGTAATATTCAGGCCACTTGTCTTTAGCCAGACGACGTTCGGCAATCTCAATGGCTCTTGCTGCAATTTCTGGTCTGTTCATCTTTATGCATGCAACTGTGAGCTGAGAAGGGTAAGATCACACACTTCAACATTGTATTTGACATAAATGTATCCATATTATATATGCTTTTGTTGTCAAGGAGAGTTTCAAATAGAGGAATACAAAAAT

mRNA sequence

AAGAATCAGAAACCCTACCTCTCGCCGCTATATAATATAATTTGAAGCCGTCGACTTCATTTACGGAACCCTAACTGAACTCTCTCATTTTCCTTCTCCTGATTCCGATTGGCTTCTGGTAAGGATGAAAATCGTAGCTGCTTATTTGCTCGCTGTTTTGGGAGGCAATGCCAGCCCTTCTGCTAAGGATTTGAAGGATATTCTCGGATCTGTTGGAGCGGAAGTTGATGAGGACAAAATCGAGCTTCTGATGTCTAGTGTTAAGGGTAAGGATATTACAGAGCTCATTGCATCCGGAAGAGAAAAGCTAGCATCTGTTCCTTCTGGTGGAGGTGCTGCTGTGGCAGTTGCCGCTGCTGGAGGTGGTGGCGGTGCGGCTGCCCCTGCTGCTGCCGAGTCAAAGAAAGAAGAGAAGGTTGAAGAGAAGGAGGAATCAGACGATGATATGGGCTTCAGTCTTTTCGATTAAGTATAATTACAAAGTCGAATGTTGTTCAGAGATTCTTCAAGATTTTAGATTGGAATTTTTGTTTTCACAAGGTAGTCTTTTTCCAACATTATCCCCGTGTTATGATGAGCCGAATGTCGAATTTCTTCAGTTTATAAATTTAGTCTTAATTTTTTGGATGCTTTAAAACCAAACGCCTTTTTTATTATATCGAAAACAAGGAATTGCTGCTGCTATGGCATGAATTCGAAAAATTGGAGGCCATTGTGAATTTTCTGTTGCAGTTCCCTCCAACAACTAAAGATCATTTGCACAATTAATCAAAAGAAGATTGATACACTTTGGGTGGGGTGTCTTCTCGAGTTCTTTTGGTTCTTCACAAGGAGAAACAGCAAGGACTAATGGTGGATGCCAAAATAAAGGATTCCACCCATGAGGAGGGATAACAAAGCATCGTCAGTTGGCCAAAGTTAAATATGTGTATCTATAATATATATGTGAATAAGGCCGCATAAACTCGACTTACCCACTCAATAAATGGTAGCTAACAAATACGCCACAACTGCCTATATGAAGTATCCAATTTCAATACGTTTAGAGCATAAATTTGGGGAGTAGCAGCCAGCCCCTTGGATCCCAACTCCATATGCACCCACTTCAAAGTAGCGGCTTAATATATAACACCAAGCTTTGTTCTGGGCAACAACCTAAACTATGTAAGTCGGATTTGAGCTTTTCTGACCGCGCTTTCTTTTCGGGCTGGCACTGATCATACAAGAGAAGGCATTGACAAGATCCGAGTCCTCTTCAGTTGTTAACATTTTGGCCTTACTTGGCTCGGCAAGCAGGAGCTTGCTCAAGAGGTATCCTGCAATTGACCATGTTTGATATAGGCGTGCTTGTTTTCCAATGAACCGTCCTTTCCTCGTGTCGTAATATTCAGGCCACTTGTCTTTAGCCAGACGACGTTCGGCAATCTCAATGGCTCTTGCTGCAATTTCTGGTCTGTTCATCTTTATGCATGCAACTGTGAGCTGAGAAGGGTAAGATCACACACTTCAACATTGTATTTGACATAAATGTATCCATATTATATATGCTTTTGTTGTCAAGGAGAGTTTCAAATAGAGGAATACAAAAAT

Coding sequence (CDS)

ATGAAAATCGTAGCTGCTTATTTGCTCGCTGTTTTGGGAGGCAATGCCAGCCCTTCTGCTAAGGATTTGAAGGATATTCTCGGATCTGTTGGAGCGGAAGTTGATGAGGACAAAATCGAGCTTCTGATGTCTAGTGTTAAGGGTAAGGATATTACAGAGCTCATTGCATCCGGAAGAGAAAAGCTAGCATCTGTTCCTTCTGGTGGAGGTGCTGCTGTGGCAGTTGCCGCTGCTGGAGGTGGTGGCGGTGCGGCTGCCCCTGCTGCTGCCGAGTCAAAGAAAGAAGAGAAGGTTGAAGAGAAGGAGGAATCAGACGATGATATGGGCTTCAGTCTTTTCGATTAA
Homology
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BLAST of CmoCh04G014990 vs. Swiss-Prot
Match: RLA21_ARATH (60S acidic ribosomal protein P2-1 OS=Arabidopsis thaliana GN=RPP2A PE=2 SV=2)

HSP 1 Score: 147.5 bits (371), Expect = 8.8e-35
Identity = 87/116 (75.00%), Postives = 99/116 (85.34%), Query Frame = 1 

Query: 1   MKIVAAYLLAVLGGNASPSAKDLKDILGSVGAEVDEDKIELLMSSVKGKDITELIASGRE 60
           MK+VAA+LLAVL G ASP+  D+KDILGSVGAE ++ +IELL+  VKGKD+ ELIA+GRE
Sbjct: 1   MKVVAAFLLAVLSGKASPTTGDIKDILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 61  KLASVPSGGGAAVAVAAA--GGGGGAAAPAAAESKKEEKVEEKEESDDDMGFSLFD 115
           KLASVPSGGG  VAVA+A  GGGGG  AP AAESKKEEK EEKEESDDDMGFSLF+
Sbjct: 61  KLASVPSGGGGGVAVASATSGGGGGGGAP-AAESKKEEKKEEKEESDDDMGFSLFE 115

[Close]
BLAST of CmoCh04G014990 vs. Swiss-Prot
Match: RLA22_ARATH (60S acidic ribosomal protein P2-2 OS=Arabidopsis thaliana GN=RPP2B PE=1 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 4.4e-34
Identity = 84/115 (73.04%), Postives = 97/115 (84.35%), Query Frame = 1 

Query: 1   MKIVAAYLLAVLGGNASPSAKDLKDILGSVGAEVDEDKIELLMSSVKGKDITELIASGRE 60
           MK+VAAYLLAVL G ASP++ D+K ILGSVGAE ++ +IELL+  VKGKD+ ELIA+GRE
Sbjct: 1   MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 61  KLASVPSGGGAAVAVAAA-GGGGGAAAPAAAESKKEEKVEEKEESDDDMGFSLFD 115
           KLASVPSGGG  VAVA+A  GGGG    +AAESKKEEK EEKEESDDDMGFSLF+
Sbjct: 61  KLASVPSGGGGGVAVASATSGGGGGGGASAAESKKEEKKEEKEESDDDMGFSLFE 115

[Close]
BLAST of CmoCh04G014990 vs. Swiss-Prot
Match: RLA2_PARAR (60S acidic ribosomal protein P2 OS=Parthenium argentatum PE=3 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 5.7e-34
Identity = 84/114 (73.68%), Postives = 97/114 (85.09%), Query Frame = 1 

Query: 1   MKIVAAYLLAVLGGNASPSAKDLKDILGSVGAEVDEDKIELLMSSVKGKDITELIASGRE 60
           MK++AA+LLA+LGGN SP+ +DLK IL SVGA+ D+DKIELL+S VKGKDITELIASGRE
Sbjct: 1   MKVIAAFLLALLGGNTSPTDEDLKSILASVGADADDDKIELLLSQVKGKDITELIASGRE 60

Query: 61  KLASVPSGGGAAVAVAAAGGGGGAAAPAAAESKKEEKVEEKEESDDDMGFSLFD 115
           +LASVPSGGG AVA AA GGGG A A AA E KKEEK E  EESD+++GFSLFD
Sbjct: 61  RLASVPSGGGVAVAAAAGGGGGDAPAAAAEEPKKEEKSE--EESDEELGFSLFD 112

[Close]
BLAST of CmoCh04G014990 vs. Swiss-Prot
Match: RLA24_ARATH (60S acidic ribosomal protein P2-4 OS=Arabidopsis thaliana GN=RPP2D PE=2 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 5.7e-34
Identity = 83/114 (72.81%), Postives = 96/114 (84.21%), Query Frame = 1 

Query: 1   MKIVAAYLLAVLGGNASPSAKDLKDILGSVGAEVDEDKIELLMSSVKGKDITELIASGRE 60
           MK+ AA+LLAVLGGNA+PSA ++KDI+G+VGA+VD + IELL+  V GKDI ELIASGRE
Sbjct: 1   MKVAAAFLLAVLGGNANPSADNIKDIIGAVGADVDGESIELLLKEVSGKDIAELIASGRE 60

Query: 61  KLASVPSGGGAAVAVAAAGGGGGAAAPAAAESKKEEKVEEKEESDDDMGFSLFD 115
           KLASVPSGGG AV+ A + GGGGAAAPA    KKE K EEKEESDDDMGFSLF+
Sbjct: 61  KLASVPSGGGVAVSAAPSSGGGGAAAPA---EKKEAKKEEKEESDDDMGFSLFE 111

[Close]
BLAST of CmoCh04G014990 vs. Swiss-Prot
Match: RLA2A_MAIZE (60S acidic ribosomal protein P2A OS=Zea mays GN=RPP2A PE=1 SV=3)

HSP 1 Score: 141.4 bits (355), Expect = 6.3e-33
Identity = 88/114 (77.19%), Postives = 94/114 (82.46%), Query Frame = 1 

Query: 1   MKIVAAYLLAVLGGNASPSAKDLKDILGSVGAEVDEDKIELLMSSVKGKDITELIASGRE 60
           MK VAAYLLAVL GNASPSA DL  IL SVG EVD +K+ELL+S + GKDITELIA+GRE
Sbjct: 1   MKFVAAYLLAVLAGNASPSADDLTAILESVGCEVDNEKMELLLSQLSGKDITELIAAGRE 60

Query: 61  KLASVPSGGGAAVAVAAAGGGGGAAAPAAAESKKEEKVEEKEESDDDMGFSLFD 115
           K ASVP GGG  VAVAAA    G AAP AAE+KKEEKVEEKEESDDDMGFSLFD
Sbjct: 61  KFASVPCGGG-GVAVAAAAPAAGGAAP-AAEAKKEEKVEEKEESDDDMGFSLFD 112

[Close]
BLAST of CmoCh04G014990 vs. TrEMBL
Match: A0A0A0KRE0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G615230 PE=3 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 7.2e-44
Identity = 104/114 (91.23%), Postives = 111/114 (97.37%), Query Frame = 1 

Query: 1   MKIVAAYLLAVLGGNASPSAKDLKDILGSVGAEVDEDKIELLMSSVKGKDITELIASGRE 60
           MKIVAAYLLAVLGGN++PSAKDLKDILGSVGAEVDE++I LL+S+VKGKDITELIASGRE
Sbjct: 1   MKIVAAYLLAVLGGNSNPSAKDLKDILGSVGAEVDEERINLLLSNVKGKDITELIASGRE 60

Query: 61  KLASVPSGGGAAVAVAAAGGGGGAAAPAAAESKKEEKVEEKEESDDDMGFSLFD 115
           KLASVPSGGGAAVAVAA GGGGGAAAPA AE+KKEEKVEEKEESDDDMGFSLFD
Sbjct: 61  KLASVPSGGGAAVAVAAGGGGGGAAAPAPAEAKKEEKVEEKEESDDDMGFSLFD 114

[Close]
BLAST of CmoCh04G014990 vs. TrEMBL
Match: A5AGQ2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_003816 PE=3 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 7.5e-41
Identity = 100/114 (87.72%), Postives = 107/114 (93.86%), Query Frame = 1 

Query: 1   MKIVAAYLLAVLGGNASPSAKDLKDILGSVGAEVDEDKIELLMSSVKGKDITELIASGRE 60
           MK++AAYLLAVLGGN  PSA+DLKDILGSVGAE D+D+IELL++ VKGKDITELIASGRE
Sbjct: 1   MKVIAAYLLAVLGGNTCPSAEDLKDILGSVGAEADDDRIELLLAEVKGKDITELIASGRE 60

Query: 61  KLASVPSGGGAAVAVAAAGGGGGAAAPAAAESKKEEKVEEKEESDDDMGFSLFD 115
           KLASVPSGGGAAVAVAA  GGGGAAAPAAAE KKEEKVEEKEESDDDMGFSLFD
Sbjct: 61  KLASVPSGGGAAVAVAAP-GGGGAAAPAAAEPKKEEKVEEKEESDDDMGFSLFD 113

[Close]
BLAST of CmoCh04G014990 vs. TrEMBL
Match: D7SN28_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0061g01600 PE=3 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 7.5e-41
Identity = 100/114 (87.72%), Postives = 107/114 (93.86%), Query Frame = 1 

Query: 1   MKIVAAYLLAVLGGNASPSAKDLKDILGSVGAEVDEDKIELLMSSVKGKDITELIASGRE 60
           MK++AAYLLAVLGGN  PSA+DLKDILGSVGAE D+D+IELL++ VKGKDITELIASGRE
Sbjct: 33  MKVIAAYLLAVLGGNTCPSAEDLKDILGSVGAEADDDRIELLLAEVKGKDITELIASGRE 92

Query: 61  KLASVPSGGGAAVAVAAAGGGGGAAAPAAAESKKEEKVEEKEESDDDMGFSLFD 115
           KLASVPSGGGAAVAVAA  GGGGAAAPAAAE KKEEKVEEKEESDDDMGFSLFD
Sbjct: 93  KLASVPSGGGAAVAVAAP-GGGGAAAPAAAEPKKEEKVEEKEESDDDMGFSLFD 145

[Close]
BLAST of CmoCh04G014990 vs. TrEMBL
Match: S8D2Z2_9LAMI (Uncharacterized protein (Fragment) OS=Genlisea aurea GN=M569_00658 PE=3 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 8.3e-40
Identity = 98/119 (82.35%), Postives = 109/119 (91.60%), Query Frame = 1 

Query: 1   MKIVAAYLLAVLGGNASPSAKDLKDILGSVGAEVDEDKIELLMSSVKGKDITELIASGRE 60
           MK+VAAYLLAVLGGN+SP+A+DLKDILGSVGA+ D+++IELL+S VKGKDITELIASGRE
Sbjct: 3   MKVVAAYLLAVLGGNSSPTAEDLKDILGSVGADADDERIELLLSQVKGKDITELIASGRE 62

Query: 61  KLASVPSGGGAAVAVAA-----AGGGGGAAAPAAAESKKEEKVEEKEESDDDMGFSLFD 115
           KLASVP+GGG AVAVAA      GGGG AAAPAAAE+KKEEKVEEKEESDDDMGFSLFD
Sbjct: 63  KLASVPAGGGGAVAVAAPVGGGGGGGGAAAAPAAAEAKKEEKVEEKEESDDDMGFSLFD 121

[Close]
BLAST of CmoCh04G014990 vs. TrEMBL
Match: Q8H2B9_PRUDU (60S acidic ribosomal protein OS=Prunus dulcis GN=AL60SRP PE=2 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 2.4e-39
Identity = 97/114 (85.09%), Postives = 106/114 (92.98%), Query Frame = 1 

Query: 1   MKIVAAYLLAVLGGNASPSAKDLKDILGSVGAEVDEDKIELLMSSVKGKDITELIASGRE 60
           MK+VAAYLLAVLGGN +PSA+DLKDILGSVGAE D+D+I+LL+S VKGKDITELIASGRE
Sbjct: 1   MKVVAAYLLAVLGGNTTPSAEDLKDILGSVGAETDDDRIQLLLSEVKGKDITELIASGRE 60

Query: 61  KLASVPSGGGAAVAVAAAGGGGGAAAPAAAESKKEEKVEEKEESDDDMGFSLFD 115
           KLASVPSGGG AVAVAA G G GAAAPAAAE KKEEKVEEKE++DDDMGFSLFD
Sbjct: 61  KLASVPSGGG-AVAVAAPGAGAGAAAPAAAEPKKEEKVEEKEDTDDDMGFSLFD 113

[Close]
BLAST of CmoCh04G014990 vs. TAIR10
Match: AT2G27710.1 (AT2G27710.1 60S acidic ribosomal protein family)

HSP 1 Score: 145.2 bits (365), Expect = 2.5e-35
Identity = 84/115 (73.04%), Postives = 97/115 (84.35%), Query Frame = 1 

Query: 1   MKIVAAYLLAVLGGNASPSAKDLKDILGSVGAEVDEDKIELLMSSVKGKDITELIASGRE 60
           MK+VAAYLLAVL G ASP++ D+K ILGSVGAE ++ +IELL+  VKGKD+ ELIA+GRE
Sbjct: 1   MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 61  KLASVPSGGGAAVAVAAA-GGGGGAAAPAAAESKKEEKVEEKEESDDDMGFSLFD 115
           KLASVPSGGG  VAVA+A  GGGG    +AAESKKEEK EEKEESDDDMGFSLF+
Sbjct: 61  KLASVPSGGGGGVAVASATSGGGGGGGASAAESKKEEKKEEKEESDDDMGFSLFE 115

[Close]
BLAST of CmoCh04G014990 vs. TAIR10
Match: AT3G44590.2 (AT3G44590.2 60S acidic ribosomal protein family)

HSP 1 Score: 144.8 bits (364), Expect = 3.2e-35
Identity = 83/114 (72.81%), Postives = 96/114 (84.21%), Query Frame = 1 

Query: 1   MKIVAAYLLAVLGGNASPSAKDLKDILGSVGAEVDEDKIELLMSSVKGKDITELIASGRE 60
           MK+ AA+LLAVLGGNA+PSA ++KDI+G+VGA+VD + IELL+  V GKDI ELIASGRE
Sbjct: 1   MKVAAAFLLAVLGGNANPSADNIKDIIGAVGADVDGESIELLLKEVSGKDIAELIASGRE 60

Query: 61  KLASVPSGGGAAVAVAAAGGGGGAAAPAAAESKKEEKVEEKEESDDDMGFSLFD 115
           KLASVPSGGG AV+ A + GGGGAAAPA    KKE K EEKEESDDDMGFSLF+
Sbjct: 61  KLASVPSGGGVAVSAAPSSGGGGAAAPA---EKKEAKKEEKEESDDDMGFSLFE 111

[Close]
BLAST of CmoCh04G014990 vs. TAIR10
Match: AT2G27720.2 (AT2G27720.2 60S acidic ribosomal protein family)

HSP 1 Score: 135.6 bits (340), Expect = 1.9e-32
Identity = 86/131 (65.65%), Postives = 98/131 (74.81%), Query Frame = 1 

Query: 1   MKIVAAYLLAVLGGNASPSAKDLKDILGS---------------VGAEVDEDKIELLMSS 60
           MK+VAA+LLAVL G ASP+  D+KDILGS                GAE ++ +IELL+  
Sbjct: 1   MKVVAAFLLAVLSGKASPTTGDIKDILGSGIMVLVLDCVVIGDCFGAETEDSQIELLLKE 60

Query: 61  VKGKDITELIASGREKLASVPSGGGAAVAVAAA--GGGGGAAAPAAAESKKEEKVEEKEE 115
           VKGKD+ ELIA+GREKLASVPSGGG  VAVA+A  GGGGG  AP AAESKKEEK EEKEE
Sbjct: 61  VKGKDLAELIAAGREKLASVPSGGGGGVAVASATSGGGGGGGAP-AAESKKEEKKEEKEE 120

[Close]
BLAST of CmoCh04G014990 vs. TAIR10
Match: AT5G40040.1 (AT5G40040.1 60S acidic ribosomal protein family)

HSP 1 Score: 114.4 bits (285), Expect = 4.7e-26
Identity = 75/117 (64.10%), Postives = 92/117 (78.63%), Query Frame = 1 

Query: 1   MKIVAAYLLAVLGGNASPSAKDLKDILGSVGAEVDEDKIELLMSSVKGKDITELIASGRE 60
           MK+VAAYLLA L GN +PS  DLK I+ SVGAE+D++KI+L  S +K +D+TELIA GRE
Sbjct: 1   MKVVAAYLLAKLSGNENPSVADLKKIVESVGAEIDQEKIDLFFSLIKDRDVTELIAVGRE 60

Query: 61  KLASVPSGGGAAVAVAAAGGGGG--AAAPAAAESKKEEKVEEKEESDDDMG-FSLFD 115
           K+A++ SGGG AVAVA+ GGGG   AA PA+ ESKK+E  EEKEES+DD G  SLFD
Sbjct: 61  KMAALSSGGG-AVAVASGGGGGAAPAAEPASVESKKKE--EEKEESEDDGGMMSLFD 114

[Close]
BLAST of CmoCh04G014990 vs. TAIR10
Match: AT3G28500.1 (AT3G28500.1 60S acidic ribosomal protein family)

HSP 1 Score: 107.5 bits (267), Expect = 5.7e-24
Identity = 68/116 (58.62%), Postives = 90/116 (77.59%), Query Frame = 1 

Query: 1   MKIVAAYLLAVLGGNASPSAKDLKDILGSVGAEVDEDKIELLMSSVKGKDITELIASGRE 60
           MK++AA+LLA LGGN +P++ DLK IL SVGAE+DE KI+LL S +K  D+TELIA+GRE
Sbjct: 1   MKVIAAFLLAKLGGNENPTSNDLKKILESVGAEIDETKIDLLFSLIKDHDVTELIAAGRE 60

Query: 61  KLASVPSGGGAAVAVAAAGGGGGAAAPAAAESKKEEKVEE-KEESDDDMG-FSLFD 115
           K++++ S GG AVA+ A GGGGGAA+ A   ++ ++KVEE K+ES DD G   LFD
Sbjct: 61  KMSAL-SSGGPAVAMVAGGGGGGAASAAEPVAESKKKVEEVKDESSDDAGMMGLFD 115

[Close]
BLAST of CmoCh04G014990 vs. NCBI nr
Match: gi|659091858|ref|XP_008446770.1| (PREDICTED: 60S acidic ribosomal protein P2-4-like [Cucumis melo])

HSP 1 Score: 186.4 bits (472), Expect = 2.7e-44
Identity = 104/114 (91.23%), Postives = 111/114 (97.37%), Query Frame = 1 

Query: 1   MKIVAAYLLAVLGGNASPSAKDLKDILGSVGAEVDEDKIELLMSSVKGKDITELIASGRE 60
           MKIVAAYLLAVLGGN SPSAKDLKDILGSVGAE+DE++IELL+S+VKGKD+TELIASGRE
Sbjct: 1   MKIVAAYLLAVLGGNTSPSAKDLKDILGSVGAEIDEERIELLLSNVKGKDVTELIASGRE 60

Query: 61  KLASVPSGGGAAVAVAAAGGGGGAAAPAAAESKKEEKVEEKEESDDDMGFSLFD 115
           KLASVPSGGGAAVAVAA GGGGGAAAPA AE+KKEEKVEEKEESDDDMGFSLFD
Sbjct: 61  KLASVPSGGGAAVAVAAGGGGGGAAAPAPAEAKKEEKVEEKEESDDDMGFSLFD 114

[Close]
BLAST of CmoCh04G014990 vs. NCBI nr
Match: gi|449465545|ref|XP_004150488.1| (PREDICTED: 60S acidic ribosomal protein P2-4 [Cucumis sativus])

HSP 1 Score: 184.5 bits (467), Expect = 1.0e-43
Identity = 104/114 (91.23%), Postives = 111/114 (97.37%), Query Frame = 1 

Query: 1   MKIVAAYLLAVLGGNASPSAKDLKDILGSVGAEVDEDKIELLMSSVKGKDITELIASGRE 60
           MKIVAAYLLAVLGGN++PSAKDLKDILGSVGAEVDE++I LL+S+VKGKDITELIASGRE
Sbjct: 1   MKIVAAYLLAVLGGNSNPSAKDLKDILGSVGAEVDEERINLLLSNVKGKDITELIASGRE 60

Query: 61  KLASVPSGGGAAVAVAAAGGGGGAAAPAAAESKKEEKVEEKEESDDDMGFSLFD 115
           KLASVPSGGGAAVAVAA GGGGGAAAPA AE+KKEEKVEEKEESDDDMGFSLFD
Sbjct: 61  KLASVPSGGGAAVAVAAGGGGGGAAAPAPAEAKKEEKVEEKEESDDDMGFSLFD 114

[Close]
BLAST of CmoCh04G014990 vs. NCBI nr
Match: gi|720082507|ref|XP_010242613.1| (PREDICTED: 60S acidic ribosomal protein P2-like [Nelumbo nucifera])

HSP 1 Score: 178.7 bits (452), Expect = 5.7e-42
Identity = 100/114 (87.72%), Postives = 107/114 (93.86%), Query Frame = 1 

Query: 1   MKIVAAYLLAVLGGNASPSAKDLKDILGSVGAEVDEDKIELLMSSVKGKDITELIASGRE 60
           MK++AAYLLAVLGGNASPSA DLKDILGSVGAE D+D+IELL+S VKGKDITELIASGRE
Sbjct: 1   MKVIAAYLLAVLGGNASPSADDLKDILGSVGAEADDDRIELLLSEVKGKDITELIASGRE 60

Query: 61  KLASVPSGGGAAVAVAAAGGGGGAAAPAAAESKKEEKVEEKEESDDDMGFSLFD 115
           KLASVPSGGGAA+AVAA GGG  AAAPAAAE KKEEKVEEKEESD+DMGFSLFD
Sbjct: 61  KLASVPSGGGAAIAVAAGGGGAAAAAPAAAEPKKEEKVEEKEESDEDMGFSLFD 114

[Close]
BLAST of CmoCh04G014990 vs. NCBI nr
Match: gi|731394074|ref|XP_010651712.1| (PREDICTED: 60S acidic ribosomal protein P2 isoform X2 [Vitis vinifera])

HSP 1 Score: 174.5 bits (441), Expect = 1.1e-40
Identity = 100/114 (87.72%), Postives = 107/114 (93.86%), Query Frame = 1 

Query: 1   MKIVAAYLLAVLGGNASPSAKDLKDILGSVGAEVDEDKIELLMSSVKGKDITELIASGRE 60
           MK++AAYLLAVLGGN  PSA+DLKDILGSVGAE D+D+IELL++ VKGKDITELIASGRE
Sbjct: 1   MKVIAAYLLAVLGGNTCPSAEDLKDILGSVGAEADDDRIELLLAEVKGKDITELIASGRE 60

Query: 61  KLASVPSGGGAAVAVAAAGGGGGAAAPAAAESKKEEKVEEKEESDDDMGFSLFD 115
           KLASVPSGGGAAVAVAA  GGGGAAAPAAAE KKEEKVEEKEESDDDMGFSLFD
Sbjct: 61  KLASVPSGGGAAVAVAAP-GGGGAAAPAAAEPKKEEKVEEKEESDDDMGFSLFD 113

[Close]
BLAST of CmoCh04G014990 vs. NCBI nr
Match: gi|731394072|ref|XP_002266030.2| (PREDICTED: 60S acidic ribosomal protein P2 isoform X1 [Vitis vinifera])

HSP 1 Score: 174.5 bits (441), Expect = 1.1e-40
Identity = 100/114 (87.72%), Postives = 107/114 (93.86%), Query Frame = 1 

Query: 1   MKIVAAYLLAVLGGNASPSAKDLKDILGSVGAEVDEDKIELLMSSVKGKDITELIASGRE 60
           MK++AAYLLAVLGGN  PSA+DLKDILGSVGAE D+D+IELL++ VKGKDITELIASGRE
Sbjct: 33  MKVIAAYLLAVLGGNTCPSAEDLKDILGSVGAEADDDRIELLLAEVKGKDITELIASGRE 92

Query: 61  KLASVPSGGGAAVAVAAAGGGGGAAAPAAAESKKEEKVEEKEESDDDMGFSLFD 115
           KLASVPSGGGAAVAVAA  GGGGAAAPAAAE KKEEKVEEKEESDDDMGFSLFD
Sbjct: 93  KLASVPSGGGAAVAVAAP-GGGGAAAPAAAEPKKEEKVEEKEESDDDMGFSLFD 145

The following BLAST results are available for this feature:
BLAST of CmoCh04G014990 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RLA21_ARATH8.8e-3575.0060S acidic ribosomal protein P2-1 OS=Arabidopsis thaliana GN=RPP2A PE=2 SV=2[more]
RLA22_ARATH4.4e-3473.0460S acidic ribosomal protein P2-2 OS=Arabidopsis thaliana GN=RPP2B PE=1 SV=1[more]
RLA2_PARAR5.7e-3473.6860S acidic ribosomal protein P2 OS=Parthenium argentatum PE=3 SV=1[more]
RLA24_ARATH5.7e-3472.8160S acidic ribosomal protein P2-4 OS=Arabidopsis thaliana GN=RPP2D PE=2 SV=1[more]
RLA2A_MAIZE6.3e-3377.1960S acidic ribosomal protein P2A OS=Zea mays GN=RPP2A PE=1 SV=3[more]
BLAST of CmoCh04G014990 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KRE0_CUCSA7.2e-4491.23Uncharacterized protein OS=Cucumis sativus GN=Csa_5G615230 PE=3 SV=1[more]
A5AGQ2_VITVI7.5e-4187.72Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_003816 PE=3 SV=1[more]
D7SN28_VITVI7.5e-4187.72Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0061g01600 PE=3 SV=... [more]
S8D2Z2_9LAMI8.3e-4082.35Uncharacterized protein (Fragment) OS=Genlisea aurea GN=M569_00658 PE=3 SV=1[more]
Q8H2B9_PRUDU2.4e-3985.0960S acidic ribosomal protein OS=Prunus dulcis GN=AL60SRP PE=2 SV=1[more]
BLAST of CmoCh04G014990 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G27710.12.5e-3573.04 60S acidic ribosomal protein family[more]
AT3G44590.23.2e-3572.81 60S acidic ribosomal protein family[more]
AT2G27720.21.9e-3265.65 60S acidic ribosomal protein family[more]
AT5G40040.14.7e-2664.10 60S acidic ribosomal protein family[more]
AT3G28500.15.7e-2458.62 60S acidic ribosomal protein family[more]
BLAST of CmoCh04G014990 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659091858|ref|XP_008446770.1|2.7e-4491.23PREDICTED: 60S acidic ribosomal protein P2-4-like [Cucumis melo][more]
gi|449465545|ref|XP_004150488.1|1.0e-4391.23PREDICTED: 60S acidic ribosomal protein P2-4 [Cucumis sativus][more]
gi|720082507|ref|XP_010242613.1|5.7e-4287.72PREDICTED: 60S acidic ribosomal protein P2-like [Nelumbo nucifera][more]
gi|731394074|ref|XP_010651712.1|1.1e-4087.72PREDICTED: 60S acidic ribosomal protein P2 isoform X2 [Vitis vinifera][more]
gi|731394072|ref|XP_002266030.2|1.1e-4087.72PREDICTED: 60S acidic ribosomal protein P2 isoform X1 [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR027534Ribosomal_L12
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006414translational elongation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006414 translational elongation
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G014990.1CmoCh04G014990.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR027534Ribosomal protein L12 familyHAMAPMF_01478Ribosomal_L12_archcoord: 2..114
score: 17
NoneNo IPR availablePANTHERPTHR2114160S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBERcoord: 1..114
score: 3.2
NoneNo IPR availablePFAMPF00428Ribosomal_60scoord: 17..113
score: 3.2

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh04G014990Cucsa.309030Cucumber (Gy14) v1cgycmoB0848
CmoCh04G014990CmaCh18G009390Cucurbita maxima (Rimu)cmacmoB420
CmoCh04G014990CmaCh04G014240Cucurbita maxima (Rimu)cmacmoB728
CmoCh04G014990Cla020498Watermelon (97103) v1cmowmB693
CmoCh04G014990Csa5G615230Cucumber (Chinese Long) v2cmocuB738
CmoCh04G014990MELO3C012359Melon (DHL92) v3.5.1cmomeB631
CmoCh04G014990ClCG05G021690Watermelon (Charleston Gray)cmowcgB654
CmoCh04G014990CSPI05G26430Wild cucumber (PI 183967)cmocpiB745
CmoCh04G014990Lsi04G001410Bottle gourd (USVL1VR-Ls)cmolsiB660
CmoCh04G014990Cp4.1LG09g03800Cucurbita pepo (Zucchini)cmocpeB651
CmoCh04G014990Cp4.1LG01g14310Cucurbita pepo (Zucchini)cmocpeB673
CmoCh04G014990MELO3C012359.2Melon (DHL92) v3.6.1cmomedB720
CmoCh04G014990CsaV3_5G035580Cucumber (Chinese Long) v3cmocucB0874
CmoCh04G014990Cla97C05G103390Watermelon (97103) v2cmowmbB729
CmoCh04G014990Bhi07G000646Wax gourdcmowgoB0904
CmoCh04G014990CsGy5G025900Cucumber (Gy14) v2cgybcmoB650
CmoCh04G014990Carg01912Silver-seed gourdcarcmoB1138
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh04G014990CmoCh18G009430Cucurbita moschata (Rifu)cmocmoB336
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh04G014990Cucurbita moschata (Rifu)cmocmoB468
CmoCh04G014990Cucurbita maxima (Rimu)cmacmoB739
CmoCh04G014990Watermelon (Charleston Gray)cmowcgB681
CmoCh04G014990Watermelon (97103) v1cmowmB662
CmoCh04G014990Cucurbita pepo (Zucchini)cmocpeB687
CmoCh04G014990Bottle gourd (USVL1VR-Ls)cmolsiB700
CmoCh04G014990Silver-seed gourdcarcmoB1412