CmoCh18G009430 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh18G009430
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
Description60s acidic ribosomal family protein
LocationCmo_Chr18 : 10569933 .. 10571649 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GAAAAAAACAAATCAGAAACCCTATCTTTCGCCACTATATAAGGTAATAAGAAGCAGTCAGCAACATCTACTGAACCCTAACTAAACTCTCTCTATCTCTCTCTCGTTCTTTTGCGATTTGCTGTCTGCGAAGGATGAAGATCGTAGCTGCATATTTGCTCGCCGTCTTGGGAGGCAACTCCAGCCCTTCTGCTAAAGATTTGAAAAATATTCTTGGATCTGGTAAACATCTGCATCTCGTTCTCATTTTTATCCTTATATTTCCTAAATGTAATCCTTTTTGTGGATTATCCTGGAATTTTTGTGTTGATGTTTAGTTTTACGTGTTTTTTTTGAATTTTTGAATGAAAAATTTACGTGTTTGTTTGGTTAATATGTTTTGTTCGTTTCATAGAATCTTTTTGTTATTTACTTGCGATTTGATTCGATCTGTTGTGACTCTGCACGATTTCAAGCTTTGGAGCTTCGGTTTTTGGATGGTTTGCGGTACCGATTGCTGATTATTTCTCTCATTCTGTGAAATGATTTACGGAATTTGATTCTGTCTCGCTATGATTTTTCTTCTACCTATATTGATTCTGTTATTTTGGCTTGGTTAGCATTTTAGTTTATGAGGTTACTTAAGTTCGTTAACGCAGTTTTTGATAATTAATTTCTGTTTGAGAAACAATAAGAATAATGTGTTTGTAATTTGTGGCTGGATATGAATAAGTTTTTCATGTATGAAATTTGCAATCGACGGTTCAAGAGACTGAAGCGGCAGCACGATTGTTTTTTAATAATTATACATTAAGACTGTTTTTTGGTTGTAGCATGATATCCTTAGTGTTGTTATTTGTAATACTCATTTTCGTCGCCTTTTGTTTGAATTACGTGAAAGTCAAGTATTTTGATTGATGTCATATATATTTTTTTTCTGAAACCAATTTGCAGTTGGAGCTGAAGTTGATGATGAAAAAATCGAGCTTCTGTTGTCTAGCGTTAAGGGCAAGGATGTTACAGAGCTCATTGCTTCCGGAAGAGAAAAACTAGCATCTGTTCCTTCTGGTGGAGGTGCTGCCATGGCAGTTGCCGCTGGAGGCGGTGGGGGTGGTGGTGGTGCCGCCCCAGCTGCAGAAGAGTCAAAGAAAGAGGAGAAGGTTGAAGAGAAGGAAGAATCAGATGATGTAAGCTTCGTTAAACTCTACGAAAATGTTGCTTGGAATTGCCATAAGATTCTTGATCATAAACTCAGTTTTATTCGGTAAATCTGTTCTAATTTCTTGTTTGATCGATGTTTTGCAGGACATGGGCTTCAGTCTCTTCGATTAAGTATAATTACAATGTCGAATGTTTTTGTTCAGAGAATTTTCAAGATTTTAGGTTGGATTTTTTGTTATTCACGTGTAGTTTCTTTTAACATTATCGTGGTGTTATGATGAGCCAAATGTTATATTTCGTTTCAGTTGATGAATTTCGTCGTTATTTTAAACATCTCGTGTTATATGAAAAGAGGAATTGCCGCTATGTCATTAATTTGAATCTCCGAGGCCATTTTGATTTCTTCTCAGTGAAGACCGATCCCTCCCTAGGGGTATGGCTGGTAAATTTTCTGCCAACATATTTTGATTAATAAAGTTAAATTTTAAATTTATTAGTATGAAAATTTTGTGTTGAATGCCTAAATATCTTGTTGCTGCGTGGAATCCTTTTCTTTTCTTTGGGATGTAATGATAAA

mRNA sequence

GAAAAAAACAAATCAGAAACCCTATCTTTCGCCACTATATAAGGTAATAAGAAGCAGTCAGCAACATCTACTGAACCCTAACTAAACTCTCTCTATCTCTCTCTCGTTCTTTTGCGATTTGCTGTCTGCGAAGGATGAAGATCGTAGCTGCATATTTGCTCGCCGTCTTGGGAGGCAACTCCAGCCCTTCTGCTAAAGATTTGAAAAATATTCTTGGATCTGTTGGAGCTGAAGTTGATGATGAAAAAATCGAGCTTCTGTTGTCTAGCGTTAAGGGCAAGGATGTTACAGAGCTCATTGCTTCCGGAAGAGAAAAACTAGCATCTGTTCCTTCTGGTGGAGGTGCTGCCATGGCAGTTGCCGCTGGAGGCGGTGGGGGTGGTGGTGGTGCCGCCCCAGCTGCAGAAGAGTCAAAGAAAGAGGAGAAGGTTGAAGAGAAGGAAGAATCAGATGATGACATGGGCTTCAGTCTCTTCGATTAAGTATAATTACAATGTCGAATGTTTTTGTTCAGAGAATTTTCAAGATTTTAGGTTGGATTTTTTGTTATTCACGTGTAGTTTCTTTTAACATTATCGTGGTGTTATGATGAGCCAAATGTTATATTTCGTTTCAGTTGATGAATTTCGTCGTTATTTTAAACATCTCGTGTTATATGAAAAGAGGAATTGCCGCTATGTCATTAATTTGAATCTCCGAGGCCATTTTGATTTCTTCTCAGTGAAGACCGATCCCTCCCTAGGGGTATGGCTGGTAAATTTTCTGCCAACATATTTTGATTAATAAAGTTAAATTTTAAATTTATTAGTATGAAAATTTTGTGTTGAATGCCTAAATATCTTGTTGCTGCGTGGAATCCTTTTCTTTTCTTTGGGATGTAATGATAAA

Coding sequence (CDS)

ATGAAGATCGTAGCTGCATATTTGCTCGCCGTCTTGGGAGGCAACTCCAGCCCTTCTGCTAAAGATTTGAAAAATATTCTTGGATCTGTTGGAGCTGAAGTTGATGATGAAAAAATCGAGCTTCTGTTGTCTAGCGTTAAGGGCAAGGATGTTACAGAGCTCATTGCTTCCGGAAGAGAAAAACTAGCATCTGTTCCTTCTGGTGGAGGTGCTGCCATGGCAGTTGCCGCTGGAGGCGGTGGGGGTGGTGGTGGTGCCGCCCCAGCTGCAGAAGAGTCAAAGAAAGAGGAGAAGGTTGAAGAGAAGGAAGAATCAGATGATGACATGGGCTTCAGTCTCTTCGATTAA
Homology
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BLAST of CmoCh18G009430 vs. Swiss-Prot
Match: RLA22_ARATH (60S acidic ribosomal protein P2-2 OS=Arabidopsis thaliana GN=RPP2B PE=1 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 1.5e-34
Identity = 83/115 (72.17%), Postives = 96/115 (83.48%), Query Frame = 1 

Query: 1   MKIVAAYLLAVLGGNSSPSAKDLKNILGSVGAEVDDEKIELLLSSVKGKDVTELIASGRE 60
           MK+VAAYLLAVL G +SP++ D+K ILGSVGAE +D +IELLL  VKGKD+ ELIA+GRE
Sbjct: 1   MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 61  KLASVPSGGGAAMAVAAGGGGGGGGAAPAAEESKKEEKVEEKEESDDDMGFSLFD 116
           KLASVPSGGG  +AVA+   GGGGG   +A ESKKEEK EEKEESDDDMGFSLF+
Sbjct: 61  KLASVPSGGGGGVAVASATSGGGGGGGASAAESKKEEKKEEKEESDDDMGFSLFE 115

[Close]
BLAST of CmoCh18G009430 vs. Swiss-Prot
Match: RLA21_ARATH (60S acidic ribosomal protein P2-1 OS=Arabidopsis thaliana GN=RPP2A PE=2 SV=2)

HSP 1 Score: 145.6 bits (366), Expect = 3.4e-34
Identity = 87/116 (75.00%), Postives = 99/116 (85.34%), Query Frame = 1 

Query: 1   MKIVAAYLLAVLGGNSSPSAKDLKNILGSVGAEVDDEKIELLLSSVKGKDVTELIASGRE 60
           MK+VAA+LLAVL G +SP+  D+K+ILGSVGAE +D +IELLL  VKGKD+ ELIA+GRE
Sbjct: 1   MKVVAAFLLAVLSGKASPTTGDIKDILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 61  KLASVPSGGGAAMAVA-AGGGGGGGGAAPAAEESKKEEKVEEKEESDDDMGFSLFD 116
           KLASVPSGGG  +AVA A  GGGGGG APAA ESKKEEK EEKEESDDDMGFSLF+
Sbjct: 61  KLASVPSGGGGGVAVASATSGGGGGGGAPAA-ESKKEEKKEEKEESDDDMGFSLFE 115

[Close]
BLAST of CmoCh18G009430 vs. Swiss-Prot
Match: RLA2_PARAR (60S acidic ribosomal protein P2 OS=Parthenium argentatum PE=3 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 9.8e-34
Identity = 85/115 (73.91%), Postives = 101/115 (87.83%), Query Frame = 1 

Query: 1   MKIVAAYLLAVLGGNSSPSAKDLKNILGSVGAEVDDEKIELLLSSVKGKDVTELIASGRE 60
           MK++AA+LLA+LGGN+SP+ +DLK+IL SVGA+ DD+KIELLLS VKGKD+TELIASGRE
Sbjct: 1   MKVIAAFLLALLGGNTSPTDEDLKSILASVGADADDDKIELLLSQVKGKDITELIASGRE 60

Query: 61  KLASVPSGGGAAMAVAAGGGGGGGGAAPAAEESKKEEKVEEKEESDDDMGFSLFD 116
           +LASVPSGGG A+A AAGGGGG   AA AAEE KKEEK EE  ESD+++GFSLFD
Sbjct: 61  RLASVPSGGGVAVAAAAGGGGGDAPAA-AAEEPKKEEKSEE--ESDEELGFSLFD 112

[Close]
BLAST of CmoCh18G009430 vs. Swiss-Prot
Match: RLA2B_MAIZE (60S acidic ribosomal protein P2B OS=Zea mays GN=RPP2B PE=1 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 4.1e-32
Identity = 81/115 (70.43%), Postives = 100/115 (86.96%), Query Frame = 1 

Query: 1   MKIVAAYLLAVLGGNSSPSAKDLKNILGSVGAEVDDEKIELLLSSVKGKDVTELIASGRE 60
           MK++AAYLLAVLGGN+SP+A D+K+IL SVGAE D+EK+E LL+ +K KD+TE+IA+GRE
Sbjct: 1   MKVIAAYLLAVLGGNTSPTADDVKSILESVGAEADEEKLEFLLTELKDKDITEVIAAGRE 60

Query: 61  KLASVPSGGGAAMAVAAGGGGGGGGAAPAAEESKKEEKVEEKEESDDDMGFSLFD 116
           +L+SVPSGGG A+ + A     GGGAAP AEE+KKEEKVEEKEESD+DMGFSLFD
Sbjct: 61  RLSSVPSGGG-AIDMGAPAAVAGGGAAP-AEEAKKEEKVEEKEESDEDMGFSLFD 113

[Close]
BLAST of CmoCh18G009430 vs. Swiss-Prot
Match: RLA2A_MAIZE (60S acidic ribosomal protein P2A OS=Zea mays GN=RPP2A PE=1 SV=3)

HSP 1 Score: 137.5 bits (345), Expect = 9.2e-32
Identity = 85/115 (73.91%), Postives = 92/115 (80.00%), Query Frame = 1 

Query: 1   MKIVAAYLLAVLGGNSSPSAKDLKNILGSVGAEVDDEKIELLLSSVKGKDVTELIASGRE 60
           MK VAAYLLAVL GN+SPSA DL  IL SVG EVD+EK+ELLLS + GKD+TELIA+GRE
Sbjct: 1   MKFVAAYLLAVLAGNASPSADDLTAILESVGCEVDNEKMELLLSQLSGKDITELIAAGRE 60

Query: 61  KLASVPSGGGAAMAVAAGGGGGGGGAAPAAEESKKEEKVEEKEESDDDMGFSLFD 116
           K ASVP GGG     AA      GGAAPAA E+KKEEKVEEKEESDDDMGFSLFD
Sbjct: 61  KFASVPCGGGGVAVAAA--APAAGGAAPAA-EAKKEEKVEEKEESDDDMGFSLFD 112

[Close]
BLAST of CmoCh18G009430 vs. TrEMBL
Match: A0A0A0KRE0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G615230 PE=3 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 1.5e-41
Identity = 102/115 (88.70%), Postives = 110/115 (95.65%), Query Frame = 1 

Query: 1   MKIVAAYLLAVLGGNSSPSAKDLKNILGSVGAEVDDEKIELLLSSVKGKDVTELIASGRE 60
           MKIVAAYLLAVLGGNS+PSAKDLK+ILGSVGAEVD+E+I LLLS+VKGKD+TELIASGRE
Sbjct: 1   MKIVAAYLLAVLGGNSNPSAKDLKDILGSVGAEVDEERINLLLSNVKGKDITELIASGRE 60

Query: 61  KLASVPSGGGAAMAVAAGGGGGGGGAAPAAEESKKEEKVEEKEESDDDMGFSLFD 116
           KLASVPSGGGAA+AVAA GGGGGG AAPA  E+KKEEKVEEKEESDDDMGFSLFD
Sbjct: 61  KLASVPSGGGAAVAVAA-GGGGGGAAAPAPAEAKKEEKVEEKEESDDDMGFSLFD 114

[Close]
BLAST of CmoCh18G009430 vs. TrEMBL
Match: S8D2Z2_9LAMI (Uncharacterized protein (Fragment) OS=Genlisea aurea GN=M569_00658 PE=3 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 2.2e-40
Identity = 101/119 (84.87%), Postives = 111/119 (93.28%), Query Frame = 1 

Query: 1   MKIVAAYLLAVLGGNSSPSAKDLKNILGSVGAEVDDEKIELLLSSVKGKDVTELIASGRE 60
           MK+VAAYLLAVLGGNSSP+A+DLK+ILGSVGA+ DDE+IELLLS VKGKD+TELIASGRE
Sbjct: 3   MKVVAAYLLAVLGGNSSPTAEDLKDILGSVGADADDERIELLLSQVKGKDITELIASGRE 62

Query: 61  KLASVPSGGGAAMAVAA--GGGGGGGG--AAPAAEESKKEEKVEEKEESDDDMGFSLFD 116
           KLASVP+GGG A+AVAA  GGGGGGGG  AAPAA E+KKEEKVEEKEESDDDMGFSLFD
Sbjct: 63  KLASVPAGGGGAVAVAAPVGGGGGGGGAAAAPAAAEAKKEEKVEEKEESDDDMGFSLFD 121

[Close]
BLAST of CmoCh18G009430 vs. TrEMBL
Match: D7SN28_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0061g01600 PE=3 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 7.1e-39
Identity = 96/115 (83.48%), Postives = 106/115 (92.17%), Query Frame = 1 

Query: 1   MKIVAAYLLAVLGGNSSPSAKDLKNILGSVGAEVDDEKIELLLSSVKGKDVTELIASGRE 60
           MK++AAYLLAVLGGN+ PSA+DLK+ILGSVGAE DD++IELLL+ VKGKD+TELIASGRE
Sbjct: 33  MKVIAAYLLAVLGGNTCPSAEDLKDILGSVGAEADDDRIELLLAEVKGKDITELIASGRE 92

Query: 61  KLASVPSGGGAAMAVAAGGGGGGGGAAPAAEESKKEEKVEEKEESDDDMGFSLFD 116
           KLASVPSGGGAA+AVAA   GGGG AAPAA E KKEEKVEEKEESDDDMGFSLFD
Sbjct: 93  KLASVPSGGGAAVAVAA--PGGGGAAAPAAAEPKKEEKVEEKEESDDDMGFSLFD 145

[Close]
BLAST of CmoCh18G009430 vs. TrEMBL
Match: A5AGQ2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_003816 PE=3 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 7.1e-39
Identity = 96/115 (83.48%), Postives = 106/115 (92.17%), Query Frame = 1 

Query: 1   MKIVAAYLLAVLGGNSSPSAKDLKNILGSVGAEVDDEKIELLLSSVKGKDVTELIASGRE 60
           MK++AAYLLAVLGGN+ PSA+DLK+ILGSVGAE DD++IELLL+ VKGKD+TELIASGRE
Sbjct: 1   MKVIAAYLLAVLGGNTCPSAEDLKDILGSVGAEADDDRIELLLAEVKGKDITELIASGRE 60

Query: 61  KLASVPSGGGAAMAVAAGGGGGGGGAAPAAEESKKEEKVEEKEESDDDMGFSLFD 116
           KLASVPSGGGAA+AVAA   GGGG AAPAA E KKEEKVEEKEESDDDMGFSLFD
Sbjct: 61  KLASVPSGGGAAVAVAA--PGGGGAAAPAAAEPKKEEKVEEKEESDDDMGFSLFD 113

[Close]
BLAST of CmoCh18G009430 vs. TrEMBL
Match: A0A0D2P4V1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G008900 PE=3 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 9.2e-39
Identity = 97/115 (84.35%), Postives = 103/115 (89.57%), Query Frame = 1 

Query: 1   MKIVAAYLLAVLGGNSSPSAKDLKNILGSVGAEVDDEKIELLLSSVKGKDVTELIASGRE 60
           MK+VAAYLLAVLGGN+SPSA DLK ILGSVGAE DD++IELLLS VKGKD+TELIASGRE
Sbjct: 69  MKVVAAYLLAVLGGNASPSADDLKVILGSVGAEADDDRIELLLSEVKGKDITELIASGRE 128

Query: 61  KLASVPSGGGAAMAVAAGGGGGGGGAAPAAEESKKEEKVEEKEESDDDMGFSLFD 116
           KLASVPSGGGA    A   GGGGGGAAPAA E+KKEEKVEEKEESDDDMGFSLFD
Sbjct: 129 KLASVPSGGGAVAVAAPAAGGGGGGAAPAA-EAKKEEKVEEKEESDDDMGFSLFD 182

[Close]
BLAST of CmoCh18G009430 vs. TAIR10
Match: AT2G27710.1 (AT2G27710.1 60S acidic ribosomal protein family)

HSP 1 Score: 146.7 bits (369), Expect = 8.5e-36
Identity = 83/115 (72.17%), Postives = 96/115 (83.48%), Query Frame = 1 

Query: 1   MKIVAAYLLAVLGGNSSPSAKDLKNILGSVGAEVDDEKIELLLSSVKGKDVTELIASGRE 60
           MK+VAAYLLAVL G +SP++ D+K ILGSVGAE +D +IELLL  VKGKD+ ELIA+GRE
Sbjct: 1   MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 61  KLASVPSGGGAAMAVAAGGGGGGGGAAPAAEESKKEEKVEEKEESDDDMGFSLFD 116
           KLASVPSGGG  +AVA+   GGGGG   +A ESKKEEK EEKEESDDDMGFSLF+
Sbjct: 61  KLASVPSGGGGGVAVASATSGGGGGGGASAAESKKEEKKEEKEESDDDMGFSLFE 115

[Close]
BLAST of CmoCh18G009430 vs. TAIR10
Match: AT3G44590.2 (AT3G44590.2 60S acidic ribosomal protein family)

HSP 1 Score: 135.6 bits (340), Expect = 2.0e-32
Identity = 81/115 (70.43%), Postives = 95/115 (82.61%), Query Frame = 1 

Query: 1   MKIVAAYLLAVLGGNSSPSAKDLKNILGSVGAEVDDEKIELLLSSVKGKDVTELIASGRE 60
           MK+ AA+LLAVLGGN++PSA ++K+I+G+VGA+VD E IELLL  V GKD+ ELIASGRE
Sbjct: 1   MKVAAAFLLAVLGGNANPSADNIKDIIGAVGADVDGESIELLLKEVSGKDIAELIASGRE 60

Query: 61  KLASVPSGGGAAMAVAAGGGGGGGGAAPAAEESKKEEKVEEKEESDDDMGFSLFD 116
           KLASVPSGGG A++ AA   GGGG AAPA    KKE K EEKEESDDDMGFSLF+
Sbjct: 61  KLASVPSGGGVAVS-AAPSSGGGGAAAPA---EKKEAKKEEKEESDDDMGFSLFE 111

[Close]
BLAST of CmoCh18G009430 vs. TAIR10
Match: AT2G27720.2 (AT2G27720.2 60S acidic ribosomal protein family)

HSP 1 Score: 133.7 bits (335), Expect = 7.5e-32
Identity = 86/131 (65.65%), Postives = 98/131 (74.81%), Query Frame = 1 

Query: 1   MKIVAAYLLAVLGGNSSPSAKDLKNILGS---------------VGAEVDDEKIELLLSS 60
           MK+VAA+LLAVL G +SP+  D+K+ILGS                GAE +D +IELLL  
Sbjct: 1   MKVVAAFLLAVLSGKASPTTGDIKDILGSGIMVLVLDCVVIGDCFGAETEDSQIELLLKE 60

Query: 61  VKGKDVTELIASGREKLASVPSGGGAAMAVA-AGGGGGGGGAAPAAEESKKEEKVEEKEE 116
           VKGKD+ ELIA+GREKLASVPSGGG  +AVA A  GGGGGG APAA ESKKEEK EEKEE
Sbjct: 61  VKGKDLAELIAAGREKLASVPSGGGGGVAVASATSGGGGGGGAPAA-ESKKEEKKEEKEE 120

[Close]
BLAST of CmoCh18G009430 vs. TAIR10
Match: AT5G40040.1 (AT5G40040.1 60S acidic ribosomal protein family)

HSP 1 Score: 114.8 bits (286), Expect = 3.6e-26
Identity = 77/117 (65.81%), Postives = 92/117 (78.63%), Query Frame = 1 

Query: 1   MKIVAAYLLAVLGGNSSPSAKDLKNILGSVGAEVDDEKIELLLSSVKGKDVTELIASGRE 60
           MK+VAAYLLA L GN +PS  DLK I+ SVGAE+D EKI+L  S +K +DVTELIA GRE
Sbjct: 1   MKVVAAYLLAKLSGNENPSVADLKKIVESVGAEIDQEKIDLFFSLIKDRDVTELIAVGRE 60

Query: 61  KLASVPSGGGAAMAVAAGGGGGGGGAA-PAAEESKKEEKVEEKEESDDDMG-FSLFD 116
           K+A++ SGGG A+AVA+GGGGG   AA PA+ ESKK+E  EEKEES+DD G  SLFD
Sbjct: 61  KMAALSSGGG-AVAVASGGGGGAAPAAEPASVESKKKE--EEKEESEDDGGMMSLFD 114

[Close]
BLAST of CmoCh18G009430 vs. TAIR10
Match: AT3G28500.1 (AT3G28500.1 60S acidic ribosomal protein family)

HSP 1 Score: 108.2 bits (269), Expect = 3.4e-24
Identity = 70/117 (59.83%), Postives = 86/117 (73.50%), Query Frame = 1 

Query: 1   MKIVAAYLLAVLGGNSSPSAKDLKNILGSVGAEVDDEKIELLLSSVKGKDVTELIASGRE 60
           MK++AA+LLA LGGN +P++ DLK IL SVGAE+D+ KI+LL S +K  DVTELIA+GRE
Sbjct: 1   MKVIAAFLLAKLGGNENPTSNDLKKILESVGAEIDETKIDLLFSLIKDHDVTELIAAGRE 60

Query: 61  KLASVPSGGGAAMAVAAGGGGGGGGAAPAAEESKKEEKVEE-KEESDDDMG-FSLFD 116
           K++++ SGG A   VA GGGGG   AA    ESKK  KVEE K+ES DD G   LFD
Sbjct: 61  KMSALSSGGPAVAMVAGGGGGGAASAAEPVAESKK--KVEEVKDESSDDAGMMGLFD 115

[Close]
BLAST of CmoCh18G009430 vs. NCBI nr
Match: gi|659091858|ref|XP_008446770.1| (PREDICTED: 60S acidic ribosomal protein P2-4-like [Cucumis melo])

HSP 1 Score: 178.7 bits (452), Expect = 5.7e-42
Identity = 103/115 (89.57%), Postives = 111/115 (96.52%), Query Frame = 1 

Query: 1   MKIVAAYLLAVLGGNSSPSAKDLKNILGSVGAEVDDEKIELLLSSVKGKDVTELIASGRE 60
           MKIVAAYLLAVLGGN+SPSAKDLK+ILGSVGAE+D+E+IELLLS+VKGKDVTELIASGRE
Sbjct: 1   MKIVAAYLLAVLGGNTSPSAKDLKDILGSVGAEIDEERIELLLSNVKGKDVTELIASGRE 60

Query: 61  KLASVPSGGGAAMAVAAGGGGGGGGAAPAAEESKKEEKVEEKEESDDDMGFSLFD 116
           KLASVPSGGGAA+AVAA GGGGGG AAPA  E+KKEEKVEEKEESDDDMGFSLFD
Sbjct: 61  KLASVPSGGGAAVAVAA-GGGGGGAAAPAPAEAKKEEKVEEKEESDDDMGFSLFD 114

[Close]
BLAST of CmoCh18G009430 vs. NCBI nr
Match: gi|449465545|ref|XP_004150488.1| (PREDICTED: 60S acidic ribosomal protein P2-4 [Cucumis sativus])

HSP 1 Score: 176.8 bits (447), Expect = 2.2e-41
Identity = 102/115 (88.70%), Postives = 110/115 (95.65%), Query Frame = 1 

Query: 1   MKIVAAYLLAVLGGNSSPSAKDLKNILGSVGAEVDDEKIELLLSSVKGKDVTELIASGRE 60
           MKIVAAYLLAVLGGNS+PSAKDLK+ILGSVGAEVD+E+I LLLS+VKGKD+TELIASGRE
Sbjct: 1   MKIVAAYLLAVLGGNSNPSAKDLKDILGSVGAEVDEERINLLLSNVKGKDITELIASGRE 60

Query: 61  KLASVPSGGGAAMAVAAGGGGGGGGAAPAAEESKKEEKVEEKEESDDDMGFSLFD 116
           KLASVPSGGGAA+AVAA GGGGGG AAPA  E+KKEEKVEEKEESDDDMGFSLFD
Sbjct: 61  KLASVPSGGGAAVAVAA-GGGGGGAAAPAPAEAKKEEKVEEKEESDDDMGFSLFD 114

[Close]
BLAST of CmoCh18G009430 vs. NCBI nr
Match: gi|527209363|gb|EPS74099.1| (hypothetical protein M569_00658, partial [Genlisea aurea])

HSP 1 Score: 172.9 bits (437), Expect = 3.2e-40
Identity = 101/119 (84.87%), Postives = 111/119 (93.28%), Query Frame = 1 

Query: 1   MKIVAAYLLAVLGGNSSPSAKDLKNILGSVGAEVDDEKIELLLSSVKGKDVTELIASGRE 60
           MK+VAAYLLAVLGGNSSP+A+DLK+ILGSVGA+ DDE+IELLLS VKGKD+TELIASGRE
Sbjct: 3   MKVVAAYLLAVLGGNSSPTAEDLKDILGSVGADADDERIELLLSQVKGKDITELIASGRE 62

Query: 61  KLASVPSGGGAAMAVAA--GGGGGGGG--AAPAAEESKKEEKVEEKEESDDDMGFSLFD 116
           KLASVP+GGG A+AVAA  GGGGGGGG  AAPAA E+KKEEKVEEKEESDDDMGFSLFD
Sbjct: 63  KLASVPAGGGGAVAVAAPVGGGGGGGGAAAAPAAAEAKKEEKVEEKEESDDDMGFSLFD 121

[Close]
BLAST of CmoCh18G009430 vs. NCBI nr
Match: gi|657998699|ref|XP_008391761.1| (PREDICTED: 60S acidic ribosomal protein P2-2-like [Malus domestica])

HSP 1 Score: 169.9 bits (429), Expect = 2.7e-39
Identity = 94/115 (81.74%), Postives = 107/115 (93.04%), Query Frame = 1 

Query: 1   MKIVAAYLLAVLGGNSSPSAKDLKNILGSVGAEVDDEKIELLLSSVKGKDVTELIASGRE 60
           MK+VAAYLLAVLGG ++P+A+DLK+ILGSVGAE DD++I+LLLS VKGKD+TELIASGRE
Sbjct: 1   MKVVAAYLLAVLGGKTTPTAEDLKDILGSVGAEADDDRIQLLLSEVKGKDITELIASGRE 60

Query: 61  KLASVPSGGGAAMAVAAGGGGGGGGAAPAAEESKKEEKVEEKEESDDDMGFSLFD 116
           KLASVP+GGG A+AVAA GGGGG  AAPAA E+KKEEKVEEKEESDDDMGFSLFD
Sbjct: 61  KLASVPAGGGGAVAVAAXGGGGGAAAAPAAAEAKKEEKVEEKEESDDDMGFSLFD 115

[Close]
BLAST of CmoCh18G009430 vs. NCBI nr
Match: gi|720082507|ref|XP_010242613.1| (PREDICTED: 60S acidic ribosomal protein P2-like [Nelumbo nucifera])

HSP 1 Score: 169.1 bits (427), Expect = 4.6e-39
Identity = 97/115 (84.35%), Postives = 106/115 (92.17%), Query Frame = 1 

Query: 1   MKIVAAYLLAVLGGNSSPSAKDLKNILGSVGAEVDDEKIELLLSSVKGKDVTELIASGRE 60
           MK++AAYLLAVLGGN+SPSA DLK+ILGSVGAE DD++IELLLS VKGKD+TELIASGRE
Sbjct: 1   MKVIAAYLLAVLGGNASPSADDLKDILGSVGAEADDDRIELLLSEVKGKDITELIASGRE 60

Query: 61  KLASVPSGGGAAMAVAAGGGGGGGGAAPAAEESKKEEKVEEKEESDDDMGFSLFD 116
           KLASVPSGGGAA+AVAA GGGG   AAPAA E KKEEKVEEKEESD+DMGFSLFD
Sbjct: 61  KLASVPSGGGAAIAVAA-GGGGAAAAAPAAAEPKKEEKVEEKEESDEDMGFSLFD 114

The following BLAST results are available for this feature:
BLAST of CmoCh18G009430 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RLA22_ARATH1.5e-3472.1760S acidic ribosomal protein P2-2 OS=Arabidopsis thaliana GN=RPP2B PE=1 SV=1[more]
RLA21_ARATH3.4e-3475.0060S acidic ribosomal protein P2-1 OS=Arabidopsis thaliana GN=RPP2A PE=2 SV=2[more]
RLA2_PARAR9.8e-3473.9160S acidic ribosomal protein P2 OS=Parthenium argentatum PE=3 SV=1[more]
RLA2B_MAIZE4.1e-3270.4360S acidic ribosomal protein P2B OS=Zea mays GN=RPP2B PE=1 SV=1[more]
RLA2A_MAIZE9.2e-3273.9160S acidic ribosomal protein P2A OS=Zea mays GN=RPP2A PE=1 SV=3[more]
BLAST of CmoCh18G009430 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KRE0_CUCSA1.5e-4188.70Uncharacterized protein OS=Cucumis sativus GN=Csa_5G615230 PE=3 SV=1[more]
S8D2Z2_9LAMI2.2e-4084.87Uncharacterized protein (Fragment) OS=Genlisea aurea GN=M569_00658 PE=3 SV=1[more]
D7SN28_VITVI7.1e-3983.48Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0061g01600 PE=3 SV=... [more]
A5AGQ2_VITVI7.1e-3983.48Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_003816 PE=3 SV=1[more]
A0A0D2P4V1_GOSRA9.2e-3984.35Uncharacterized protein OS=Gossypium raimondii GN=B456_004G008900 PE=3 SV=1[more]
BLAST of CmoCh18G009430 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G27710.18.5e-3672.17 60S acidic ribosomal protein family[more]
AT3G44590.22.0e-3270.43 60S acidic ribosomal protein family[more]
AT2G27720.27.5e-3265.65 60S acidic ribosomal protein family[more]
AT5G40040.13.6e-2665.81 60S acidic ribosomal protein family[more]
AT3G28500.13.4e-2459.83 60S acidic ribosomal protein family[more]
BLAST of CmoCh18G009430 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659091858|ref|XP_008446770.1|5.7e-4289.57PREDICTED: 60S acidic ribosomal protein P2-4-like [Cucumis melo][more]
gi|449465545|ref|XP_004150488.1|2.2e-4188.70PREDICTED: 60S acidic ribosomal protein P2-4 [Cucumis sativus][more]
gi|527209363|gb|EPS74099.1|3.2e-4084.87hypothetical protein M569_00658, partial [Genlisea aurea][more]
gi|657998699|ref|XP_008391761.1|2.7e-3981.74PREDICTED: 60S acidic ribosomal protein P2-2-like [Malus domestica][more]
gi|720082507|ref|XP_010242613.1|4.6e-3984.35PREDICTED: 60S acidic ribosomal protein P2-like [Nelumbo nucifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR027534Ribosomal_L12
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006414translational elongation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006414 translational elongation
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh18G009430.1CmoCh18G009430.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR027534Ribosomal protein L12 familyHAMAPMF_01478Ribosomal_L12_archcoord: 2..115
score: 17
NoneNo IPR availablePANTHERPTHR2114160S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBERcoord: 1..115
score: 2.4
NoneNo IPR availablePFAMPF00428Ribosomal_60scoord: 17..114
score: 4.9

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh18G009430Cucsa.309030Cucumber (Gy14) v1cgycmoB0847
CmoCh18G009430CmaCh18G009390Cucurbita maxima (Rimu)cmacmoB406
CmoCh18G009430CmaCh04G014240Cucurbita maxima (Rimu)cmacmoB706
CmoCh18G009430Cla020498Watermelon (97103) v1cmowmB365
CmoCh18G009430Csa5G615230Cucumber (Chinese Long) v2cmocuB406
CmoCh18G009430MELO3C012359Melon (DHL92) v3.5.1cmomeB344
CmoCh18G009430ClCG05G021690Watermelon (Charleston Gray)cmowcgB358
CmoCh18G009430CSPI05G26430Wild cucumber (PI 183967)cmocpiB411
CmoCh18G009430Lsi04G001410Bottle gourd (USVL1VR-Ls)cmolsiB364
CmoCh18G009430Cp4.1LG09g03800Cucurbita pepo (Zucchini)cmocpeB376
CmoCh18G009430Cp4.1LG01g14310Cucurbita pepo (Zucchini)cmocpeB392
CmoCh18G009430MELO3C012359.2Melon (DHL92) v3.6.1cmomedB395
CmoCh18G009430CsaV3_7G016210Cucumber (Chinese Long) v3cmocucB0499
CmoCh18G009430CsaV3_5G035580Cucumber (Chinese Long) v3cmocucB0487
CmoCh18G009430Cla97C05G103390Watermelon (97103) v2cmowmbB403
CmoCh18G009430Bhi07G000646Wax gourdcmowgoB0540
CmoCh18G009430CsGy6G012450Cucumber (Gy14) v2cgybcmoB752
CmoCh18G009430CsGy5G025900Cucumber (Gy14) v2cgybcmoB603
CmoCh18G009430Carg01912Silver-seed gourdcarcmoB1135
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh18G009430CmoCh04G014990Cucurbita moschata (Rifu)cmocmoB336
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh18G009430Silver-seed gourdcarcmoB1411
CmoCh18G009430Cucurbita moschata (Rifu)cmocmoB345
CmoCh18G009430Watermelon (Charleston Gray)cmowcgB369
CmoCh18G009430Watermelon (97103) v1cmowmB357
CmoCh18G009430Cucurbita pepo (Zucchini)cmocpeB401