CmaCh18G009390 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh18G009390
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	60S acidic ribosomal protein
Location	Cma_Chr18 : 8058488 .. 8059810 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGGTGCCTCTCAACTTCACAAAAGGATAAACAAACCAGAAACCCTATCTTTCGCCACTATATAAGGTAATAAGAAGCAGTCATCAACATCTACTGAACCCTAACTAAACTCTCTATCTCTCTCTCGTTCTTTTGCGATTTGCTGTCTGCGAAGAATGAAGATCGTAGCTGCATATTTGCTCGCCGTTTTGGGAGGCAACTCCAGCCCTTCTGCTAAAGATTTGAAGAATATTCTTGGATCTGGTAAACATCTGCATCTCGTTCTCATTTTTATCCTTATATTTCTTGAATGTAATCGTTTTTGTGGATTATCCTGGAATTTTTGTGTTGATGTTTAATTTTACGTGTTTTTTTTTTTTTGAATTTTTGAATGAAAAATTTACGTTTTAGTTTGGTTAATATGTTTTGTTCGTTTCATAGAATCTTTTTGTTATTTACTTGCGATTTGATTCTATCTGTTGTGACTCTGCGCGATTTCAAGCTTTGGAGTTCCGTTTTTTGGATGGTTTGCGGTACCGATTGCTGATTATTTTCTCTCATTCTGTAAAATGATCAATTTTATTCTGTCTCGCTGTGATTTTTCTTCTTCCTATATTGATTCTGTTATTTTGGCTTGGTTAGAATTTTAGTTTATGAGGTTACTTCCGTTCCTCAACGCAGCTTTTGATAATTAATTTCTGGTTGAGAAACAATAAGAATAATGTGTTTGTAATTTGTGGCAAGTTTTTCATGTATGAAATTTGCAATCGATGGTTCAAGAGACTGAAGCGGCAGCACGATTGTTTTTTTAATAATTACACATTAAGACTATTTTTTGGTTGGAGCATGATATCCTTAGTGTTGTTATTTGTAATACTCATTTTCATTGCCTTTTGTTTGAATTACGTGAAAGGTAAGTATTTTGATTGATGTCATATTTTTTTTTTTTCCCGAAACCAATTTGCAGTTGGAGCTGAAGTTGATGATGAAAAAATCGAGCTTCTGTTGTCTAGCGTTAAGGGCAAGGATGTTACAGAGCTCATTGCTTCCGGAAGAGAAAAACTAGCATCTGTTCCTTCTGGTGGAGGTGCTGCCATGGCAGTTGCCGCTGGAGGCGGTGGTGGTGGTGGTGGTGCCACCCCAGCTGCAGAAGAGTCAAAGAAAGAGGAGAAGGTTGAAGAGAAGGAAGAATCAGATGATGTAAGCTTCGTTAAACTCTATGATAATGTTGCTTGGAATTGCCATAAGATTCTTGATCATAACCTCAGTTTTATCGCCAAATCTGTTCTAATCTCTTGCTTGATTGGTCTTTTGCAGGATATGGGCTTCAGTCTCTTCGATTAA

mRNA sequence

CAGGTGCCTCTCAACTTCACAAAAGGATAAACAAACCAGAAACCCTATCTTTCGCCACTATATAAGGTAATAAGAAGCAGTCATCAACATCTACTGAACCCTAACTAAACTCTCTATCTCTCTCTCGTTCTTTTGCGATTTGCTGTCTGCGAAGAATGAAGATCGTAGCTGCATATTTGCTCGCCGTTTTGGGAGGCAACTCCAGCCCTTCTGCTAAAGATTTGAAGAATATTCTTGGATCTGTTGGAGCTGAAGTTGATGATGAAAAAATCGAGCTTCTGTTGTCTAGCGTTAAGGGCAAGGATGTTACAGAGCTCATTGCTTCCGGAAGAGAAAAACTAGCATCTGTTCCTTCTGGTGGAGGTGCTGCCATGGCAGTTGCCGCTGGAGGCGGTGGTGGTGGTGGTGGTGCCACCCCAGCTGCAGAAGAGTCAAAGAAAGAGGAGAAGGTTGAAGAGAAGGAAGAATCAGATGATGTAAGCTTCGTTAAACTCTATGATAATGTTGCTTGGAATTGCCATAAGATTCTTGATCATAACCTCAGTTTTATCGCCAAATCTGTTCTAATCTCTTGCTTGATTGGTCTTTTGCAGGATATGGGCTTCAGTCTCTTCGATTAA

Coding sequence (CDS)

ATGAAGATCGTAGCTGCATATTTGCTCGCCGTTTTGGGAGGCAACTCCAGCCCTTCTGCTAAAGATTTGAAGAATATTCTTGGATCTGTTGGAGCTGAAGTTGATGATGAAAAAATCGAGCTTCTGTTGTCTAGCGTTAAGGGCAAGGATGTTACAGAGCTCATTGCTTCCGGAAGAGAAAAACTAGCATCTGTTCCTTCTGGTGGAGGTGCTGCCATGGCAGTTGCCGCTGGAGGCGGTGGTGGTGGTGGTGGTGCCACCCCAGCTGCAGAAGAGTCAAAGAAAGAGGAGAAGGTTGAAGAGAAGGAAGAATCAGATGATGTAAGCTTCGTTAAACTCTATGATAATGTTGCTTGGAATTGCCATAAGATTCTTGATCATAACCTCAGTTTTATCGCCAAATCTGTTCTAATCTCTTGCTTGATTGGTCTTTTGCAGGATATGGGCTTCAGTCTCTTCGATTAA

Protein sequence

MKIVAAYLLAVLGGNSSPSAKDLKNILGSVGAEVDDEKIELLLSSVKGKDVTELIASGREKLASVPSGGGAAMAVAAGGGGGGGGATPAAEESKKEEKVEEKEESDDVSFVKLYDNVAWNCHKILDHNLSFIAKSVLISCLIGLLQDMGFSLFD

Homology

[Close]

BLAST of CmaCh18G009390 vs. Swiss-Prot
Match: RLA22_ARATH (60S acidic ribosomal protein P2-2 OS=Arabidopsis thaliana GN=RPP2B PE=1 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 2.3e-30
Identity = 77/115 (66.96%), Postives = 91/115 (79.13%), Query Frame = 1


Query: 1   MKIVAAYLLAVLGGNSSPSAKDLKNILGSVGAEVDDEKIELLLSSVKGKDVTELIASGRE 60
           MK+VAAYLLAVL G +SP++ D+K ILGSVGAE +D +IELLL  VKGKD+ ELIA+GRE
Sbjct: 1   MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 61  KLASVPSGGGAAMAVAAGGGGGGGGATPAAEESKKEEKVEEKEESDDVSFVKLYD 116
           KLASVPSGGG  +AVA+   GGGGG   +A ESKKEEK EEKEESDD     L++
Sbjct: 61  KLASVPSGGGGGVAVASATSGGGGGGGASAAESKKEEKKEEKEESDDDMGFSLFE 115

[Close]

BLAST of CmaCh18G009390 vs. Swiss-Prot
Match: RLA2_PARAR (60S acidic ribosomal protein P2 OS=Parthenium argentatum PE=3 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 4.0e-30
Identity = 80/116 (68.97%), Postives = 96/116 (82.76%), Query Frame = 1


Query: 1   MKIVAAYLLAVLGGNSSPSAKDLKNILGSVGAEVDDEKIELLLSSVKGKDVTELIASGRE 60
           MK++AA+LLA+LGGN+SP+ +DLK+IL SVGA+ DD+KIELLLS VKGKD+TELIASGRE
Sbjct: 1   MKVIAAFLLALLGGNTSPTDEDLKSILASVGADADDDKIELLLSQVKGKDITELIASGRE 60

Query: 61  KLASVPSGGGAAMAVAAGGGGGGGGATPAAEESKKEEKVEEKEESDDVSFVKLYDN 117
           +LASVPSGGG A+A AAGGGGG   A  AAEE KKEEK E  EESD+     L+D+
Sbjct: 61  RLASVPSGGGVAVAAAAGGGGGDAPAA-AAEEPKKEEKSE--EESDEELGFSLFDD 113

[Close]

BLAST of CmaCh18G009390 vs. Swiss-Prot
Match: RLA21_ARATH (60S acidic ribosomal protein P2-1 OS=Arabidopsis thaliana GN=RPP2A PE=2 SV=2)

HSP 1 Score: 131.3 bits (329), Expect = 8.8e-30
Identity = 80/116 (68.97%), Postives = 93/116 (80.17%), Query Frame = 1


Query: 1   MKIVAAYLLAVLGGNSSPSAKDLKNILGSVGAEVDDEKIELLLSSVKGKDVTELIASGRE 60
           MK+VAA+LLAVL G +SP+  D+K+ILGSVGAE +D +IELLL  VKGKD+ ELIA+GRE
Sbjct: 1   MKVVAAFLLAVLSGKASPTTGDIKDILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 61  KLASVPSGGGAAMAVA-AGGGGGGGGATPAAEESKKEEKVEEKEESDDVSFVKLYD 116
           KLASVPSGGG  +AVA A  GGGGGG  PAA ESKKEEK EEKEESDD     L++
Sbjct: 61  KLASVPSGGGGGVAVASATSGGGGGGGAPAA-ESKKEEKKEEKEESDDDMGFSLFE 115

[Close]

BLAST of CmaCh18G009390 vs. Swiss-Prot
Match: RLA2B_MAIZE (60S acidic ribosomal protein P2B OS=Zea mays GN=RPP2B PE=1 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.1e-27
Identity = 74/115 (64.35%), Postives = 94/115 (81.74%), Query Frame = 1


Query: 1   MKIVAAYLLAVLGGNSSPSAKDLKNILGSVGAEVDDEKIELLLSSVKGKDVTELIASGRE 60
           MK++AAYLLAVLGGN+SP+A D+K+IL SVGAE D+EK+E LL+ +K KD+TE+IA+GRE
Sbjct: 1   MKVIAAYLLAVLGGNTSPTADDVKSILESVGAEADEEKLEFLLTELKDKDITEVIAAGRE 60

Query: 61  KLASVPSGGGAAMAVAAGGGGGGGGATPAAEESKKEEKVEEKEESDDVSFVKLYD 116
           +L+SVPSGGG A+ + A     GGGA P AEE+KKEEKVEEKEESD+     L+D
Sbjct: 61  RLSSVPSGGG-AIDMGAPAAVAGGGAAP-AEEAKKEEKVEEKEESDEDMGFSLFD 113

[Close]

BLAST of CmaCh18G009390 vs. Swiss-Prot
Match: RLA2A_MAIZE (60S acidic ribosomal protein P2A OS=Zea mays GN=RPP2A PE=1 SV=3)

HSP 1 Score: 123.2 bits (308), Expect = 2.4e-27
Identity = 78/115 (67.83%), Postives = 86/115 (74.78%), Query Frame = 1


Query: 1   MKIVAAYLLAVLGGNSSPSAKDLKNILGSVGAEVDDEKIELLLSSVKGKDVTELIASGRE 60
           MK VAAYLLAVL GN+SPSA DL  IL SVG EVD+EK+ELLLS + GKD+TELIA+GRE
Sbjct: 1   MKFVAAYLLAVLAGNASPSADDLTAILESVGCEVDNEKMELLLSQLSGKDITELIAAGRE 60

Query: 61  KLASVPSGGGAAMAVAAGGGGGGGGATPAAEESKKEEKVEEKEESDDVSFVKLYD 116
           K ASVP GGG     AA      GGA PAA E+KKEEKVEEKEESDD     L+D
Sbjct: 61  KFASVPCGGGGVAVAAA--APAAGGAAPAA-EAKKEEKVEEKEESDDDMGFSLFD 112

[Close]

BLAST of CmaCh18G009390 vs. TrEMBL
Match: A0A0A0KRE0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G615230 PE=3 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 4.0e-37
Identity = 95/115 (82.61%), Postives = 104/115 (90.43%), Query Frame = 1


Query: 1   MKIVAAYLLAVLGGNSSPSAKDLKNILGSVGAEVDDEKIELLLSSVKGKDVTELIASGRE 60
           MKIVAAYLLAVLGGNS+PSAKDLK+ILGSVGAEVD+E+I LLLS+VKGKD+TELIASGRE
Sbjct: 1   MKIVAAYLLAVLGGNSNPSAKDLKDILGSVGAEVDEERINLLLSNVKGKDITELIASGRE 60

Query: 61  KLASVPSGGGAAMAVAAGGGGGGGGATPAAEESKKEEKVEEKEESDDVSFVKLYD 116
           KLASVPSGGGAA+AVAA GGGGGG A PA  E+KKEEKVEEKEESDD     L+D
Sbjct: 61  KLASVPSGGGAAVAVAA-GGGGGGAAAPAPAEAKKEEKVEEKEESDDDMGFSLFD 114

[Close]

BLAST of CmaCh18G009390 vs. TrEMBL
Match: S8D2Z2_9LAMI (Uncharacterized protein (Fragment) OS=Genlisea aurea GN=M569_00658 PE=3 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 5.7e-36
Identity = 94/119 (78.99%), Postives = 105/119 (88.24%), Query Frame = 1


Query: 1   MKIVAAYLLAVLGGNSSPSAKDLKNILGSVGAEVDDEKIELLLSSVKGKDVTELIASGRE 60
           MK+VAAYLLAVLGGNSSP+A+DLK+ILGSVGA+ DDE+IELLLS VKGKD+TELIASGRE
Sbjct: 3   MKVVAAYLLAVLGGNSSPTAEDLKDILGSVGADADDERIELLLSQVKGKDITELIASGRE 62

Query: 61  KLASVPSGGGAAMAVAA--GGGGGGGG--ATPAAEESKKEEKVEEKEESDDVSFVKLYD 116
           KLASVP+GGG A+AVAA  GGGGGGGG  A PAA E+KKEEKVEEKEESDD     L+D
Sbjct: 63  KLASVPAGGGGAVAVAAPVGGGGGGGGAAAAPAAAEAKKEEKVEEKEESDDDMGFSLFD 121

[Close]

BLAST of CmaCh18G009390 vs. TrEMBL
Match: D7SN28_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0061g01600 PE=3 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 1.8e-34
Identity = 89/115 (77.39%), Postives = 100/115 (86.96%), Query Frame = 1


Query: 1   MKIVAAYLLAVLGGNSSPSAKDLKNILGSVGAEVDDEKIELLLSSVKGKDVTELIASGRE 60
           MK++AAYLLAVLGGN+ PSA+DLK+ILGSVGAE DD++IELLL+ VKGKD+TELIASGRE
Sbjct: 33  MKVIAAYLLAVLGGNTCPSAEDLKDILGSVGAEADDDRIELLLAEVKGKDITELIASGRE 92

Query: 61  KLASVPSGGGAAMAVAAGGGGGGGGATPAAEESKKEEKVEEKEESDDVSFVKLYD 116
           KLASVPSGGGAA+AVAA   GGGG A PAA E KKEEKVEEKEESDD     L+D
Sbjct: 93  KLASVPSGGGAAVAVAA--PGGGGAAAPAAAEPKKEEKVEEKEESDDDMGFSLFD 145

[Close]

BLAST of CmaCh18G009390 vs. TrEMBL
Match: A5AGQ2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_003816 PE=3 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 1.8e-34
Identity = 89/115 (77.39%), Postives = 100/115 (86.96%), Query Frame = 1


Query: 1   MKIVAAYLLAVLGGNSSPSAKDLKNILGSVGAEVDDEKIELLLSSVKGKDVTELIASGRE 60
           MK++AAYLLAVLGGN+ PSA+DLK+ILGSVGAE DD++IELLL+ VKGKD+TELIASGRE
Sbjct: 1   MKVIAAYLLAVLGGNTCPSAEDLKDILGSVGAEADDDRIELLLAEVKGKDITELIASGRE 60

Query: 61  KLASVPSGGGAAMAVAAGGGGGGGGATPAAEESKKEEKVEEKEESDDVSFVKLYD 116
           KLASVPSGGGAA+AVAA   GGGG A PAA E KKEEKVEEKEESDD     L+D
Sbjct: 61  KLASVPSGGGAAVAVAA--PGGGGAAAPAAAEPKKEEKVEEKEESDDDMGFSLFD 113

[Close]

BLAST of CmaCh18G009390 vs. TrEMBL
Match: A0A0D2P4V1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G008900 PE=3 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 2.4e-34
Identity = 90/115 (78.26%), Postives = 97/115 (84.35%), Query Frame = 1


Query: 1   MKIVAAYLLAVLGGNSSPSAKDLKNILGSVGAEVDDEKIELLLSSVKGKDVTELIASGRE 60
           MK+VAAYLLAVLGGN+SPSA DLK ILGSVGAE DD++IELLLS VKGKD+TELIASGRE
Sbjct: 69  MKVVAAYLLAVLGGNASPSADDLKVILGSVGAEADDDRIELLLSEVKGKDITELIASGRE 128

Query: 61  KLASVPSGGGAAMAVAAGGGGGGGGATPAAEESKKEEKVEEKEESDDVSFVKLYD 116
           KLASVPSGGGA    A   GGGGGGA PAA E+KKEEKVEEKEESDD     L+D
Sbjct: 129 KLASVPSGGGAVAVAAPAAGGGGGGAAPAA-EAKKEEKVEEKEESDDDMGFSLFD 182

[Close]

BLAST of CmaCh18G009390 vs. TAIR10
Match: AT2G27710.1 (AT2G27710.1 60S acidic ribosomal protein family)

HSP 1 Score: 133.3 bits (334), Expect = 1.3e-31
Identity = 77/115 (66.96%), Postives = 91/115 (79.13%), Query Frame = 1


Query: 1   MKIVAAYLLAVLGGNSSPSAKDLKNILGSVGAEVDDEKIELLLSSVKGKDVTELIASGRE 60
           MK+VAAYLLAVL G +SP++ D+K ILGSVGAE +D +IELLL  VKGKD+ ELIA+GRE
Sbjct: 1   MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 61  KLASVPSGGGAAMAVAAGGGGGGGGATPAAEESKKEEKVEEKEESDDVSFVKLYD 116
           KLASVPSGGG  +AVA+   GGGGG   +A ESKKEEK EEKEESDD     L++
Sbjct: 61  KLASVPSGGGGGVAVASATSGGGGGGGASAAESKKEEKKEEKEESDDDMGFSLFE 115

[Close]

BLAST of CmaCh18G009390 vs. TAIR10
Match: AT3G44590.2 (AT3G44590.2 60S acidic ribosomal protein family)

HSP 1 Score: 121.3 bits (303), Expect = 5.1e-28
Identity = 74/115 (64.35%), Postives = 89/115 (77.39%), Query Frame = 1


Query: 1   MKIVAAYLLAVLGGNSSPSAKDLKNILGSVGAEVDDEKIELLLSSVKGKDVTELIASGRE 60
           MK+ AA+LLAVLGGN++PSA ++K+I+G+VGA+VD E IELLL  V GKD+ ELIASGRE
Sbjct: 1   MKVAAAFLLAVLGGNANPSADNIKDIIGAVGADVDGESIELLLKEVSGKDIAELIASGRE 60

Query: 61  KLASVPSGGGAAMAVAAGGGGGGGGATPAAEESKKEEKVEEKEESDDVSFVKLYD 116
           KLASVPSGGG A++ AA   GGGG A PA    KKE K EEKEESDD     L++
Sbjct: 61  KLASVPSGGGVAVS-AAPSSGGGGAAAPA---EKKEAKKEEKEESDDDMGFSLFE 111

[Close]

BLAST of CmaCh18G009390 vs. TAIR10
Match: AT2G27720.2 (AT2G27720.2 60S acidic ribosomal protein family)

HSP 1 Score: 119.4 bits (298), Expect = 2.0e-27
Identity = 79/131 (60.31%), Postives = 92/131 (70.23%), Query Frame = 1


Query: 1   MKIVAAYLLAVLGGNSSPSAKDLKNILGS---------------VGAEVDDEKIELLLSS 60
           MK+VAA+LLAVL G +SP+  D+K+ILGS                GAE +D +IELLL  
Sbjct: 1   MKVVAAFLLAVLSGKASPTTGDIKDILGSGIMVLVLDCVVIGDCFGAETEDSQIELLLKE 60

Query: 61  VKGKDVTELIASGREKLASVPSGGGAAMAVA-AGGGGGGGGATPAAEESKKEEKVEEKEE 116
           VKGKD+ ELIA+GREKLASVPSGGG  +AVA A  GGGGGG  PAA ESKKEEK EEKEE
Sbjct: 61  VKGKDLAELIAAGREKLASVPSGGGGGVAVASATSGGGGGGGAPAA-ESKKEEKKEEKEE 120

[Close]

BLAST of CmaCh18G009390 vs. TAIR10
Match: AT5G40040.1 (AT5G40040.1 60S acidic ribosomal protein family)

HSP 1 Score: 110.9 bits (276), Expect = 6.9e-25
Identity = 69/116 (59.48%), Postives = 84/116 (72.41%), Query Frame = 1


Query: 1   MKIVAAYLLAVLGGNSSPSAKDLKNILGSVGAEVDDEKIELLLSSVKGKDVTELIASGRE 60
           MK+VAAYLLA L GN +PS  DLK I+ SVGAE+D EKI+L  S +K +DVTELIA GRE
Sbjct: 1   MKVVAAYLLAKLSGNENPSVADLKKIVESVGAEIDQEKIDLFFSLIKDRDVTELIAVGRE 60

Query: 61  KLASVPSGGGAAMAVAAGGGGGGGGATPAAEESKKEEKVEEKEES-DDVSFVKLYD 116
           K+A++ SGGGA    + GGGG    A PA+ ESKK+E  EEKEES DD   + L+D
Sbjct: 61  KMAALSSGGGAVAVASGGGGGAAPAAEPASVESKKKE--EEKEESEDDGGMMSLFD 114

[Close]

BLAST of CmaCh18G009390 vs. TAIR10
Match: AT3G28500.1 (AT3G28500.1 60S acidic ribosomal protein family)

HSP 1 Score: 107.8 bits (268), Expect = 5.9e-24
Identity = 65/116 (56.03%), Postives = 85/116 (73.28%), Query Frame = 1


Query: 1   MKIVAAYLLAVLGGNSSPSAKDLKNILGSVGAEVDDEKIELLLSSVKGKDVTELIASGRE 60
           MK++AA+LLA LGGN +P++ DLK IL SVGAE+D+ KI+LL S +K  DVTELIA+GRE
Sbjct: 1   MKVIAAFLLAKLGGNENPTSNDLKKILESVGAEIDETKIDLLFSLIKDHDVTELIAAGRE 60

Query: 61  KLASVPSGGGAAMAVAAGGGGGGGGAT-PAAEESKKEEKVEEKEESDDVSFVKLYD 116
           K++++ SGG A   VA GGGGG   A  P AE  KK E+V++ E SDD   + L+D
Sbjct: 61  KMSALSSGGPAVAMVAGGGGGGAASAAEPVAESKKKVEEVKD-ESSDDAGMMGLFD 115

[Close]

BLAST of CmaCh18G009390 vs. NCBI nr
Match: gi|659091858|ref|XP_008446770.1| (PREDICTED: 60S acidic ribosomal protein P2-4-like [Cucumis melo])

HSP 1 Score: 164.5 bits (415), Expect = 1.5e-37
Identity = 96/115 (83.48%), Postives = 105/115 (91.30%), Query Frame = 1


Query: 1   MKIVAAYLLAVLGGNSSPSAKDLKNILGSVGAEVDDEKIELLLSSVKGKDVTELIASGRE 60
           MKIVAAYLLAVLGGN+SPSAKDLK+ILGSVGAE+D+E+IELLLS+VKGKDVTELIASGRE
Sbjct: 1   MKIVAAYLLAVLGGNTSPSAKDLKDILGSVGAEIDEERIELLLSNVKGKDVTELIASGRE 60

Query: 61  KLASVPSGGGAAMAVAAGGGGGGGGATPAAEESKKEEKVEEKEESDDVSFVKLYD 116
           KLASVPSGGGAA+AVAA GGGGGG A PA  E+KKEEKVEEKEESDD     L+D
Sbjct: 61  KLASVPSGGGAAVAVAA-GGGGGGAAAPAPAEAKKEEKVEEKEESDDDMGFSLFD 114

[Close]

BLAST of CmaCh18G009390 vs. NCBI nr
Match: gi|449465545|ref|XP_004150488.1| (PREDICTED: 60S acidic ribosomal protein P2-4 [Cucumis sativus])

HSP 1 Score: 162.5 bits (410), Expect = 5.7e-37
Identity = 95/115 (82.61%), Postives = 104/115 (90.43%), Query Frame = 1


Query: 1   MKIVAAYLLAVLGGNSSPSAKDLKNILGSVGAEVDDEKIELLLSSVKGKDVTELIASGRE 60
           MKIVAAYLLAVLGGNS+PSAKDLK+ILGSVGAEVD+E+I LLLS+VKGKD+TELIASGRE
Sbjct: 1   MKIVAAYLLAVLGGNSNPSAKDLKDILGSVGAEVDEERINLLLSNVKGKDITELIASGRE 60

Query: 61  KLASVPSGGGAAMAVAAGGGGGGGGATPAAEESKKEEKVEEKEESDDVSFVKLYD 116
           KLASVPSGGGAA+AVAA GGGGGG A PA  E+KKEEKVEEKEESDD     L+D
Sbjct: 61  KLASVPSGGGAAVAVAA-GGGGGGAAAPAPAEAKKEEKVEEKEESDDDMGFSLFD 114

[Close]

BLAST of CmaCh18G009390 vs. NCBI nr
Match: gi|527209363|gb|EPS74099.1| (hypothetical protein M569_00658, partial [Genlisea aurea])

HSP 1 Score: 158.7 bits (400), Expect = 8.2e-36
Identity = 94/119 (78.99%), Postives = 105/119 (88.24%), Query Frame = 1


Query: 1   MKIVAAYLLAVLGGNSSPSAKDLKNILGSVGAEVDDEKIELLLSSVKGKDVTELIASGRE 60
           MK+VAAYLLAVLGGNSSP+A+DLK+ILGSVGA+ DDE+IELLLS VKGKD+TELIASGRE
Sbjct: 3   MKVVAAYLLAVLGGNSSPTAEDLKDILGSVGADADDERIELLLSQVKGKDITELIASGRE 62

Query: 61  KLASVPSGGGAAMAVAA--GGGGGGGG--ATPAAEESKKEEKVEEKEESDDVSFVKLYD 116
           KLASVP+GGG A+AVAA  GGGGGGGG  A PAA E+KKEEKVEEKEESDD     L+D
Sbjct: 63  KLASVPAGGGGAVAVAAPVGGGGGGGGAAAAPAAAEAKKEEKVEEKEESDDDMGFSLFD 121

[Close]

BLAST of CmaCh18G009390 vs. NCBI nr
Match: gi|657998699|ref|XP_008391761.1| (PREDICTED: 60S acidic ribosomal protein P2-2-like [Malus domestica])

HSP 1 Score: 155.6 bits (392), Expect = 7.0e-35
Identity = 87/115 (75.65%), Postives = 101/115 (87.83%), Query Frame = 1


Query: 1   MKIVAAYLLAVLGGNSSPSAKDLKNILGSVGAEVDDEKIELLLSSVKGKDVTELIASGRE 60
           MK+VAAYLLAVLGG ++P+A+DLK+ILGSVGAE DD++I+LLLS VKGKD+TELIASGRE
Sbjct: 1   MKVVAAYLLAVLGGKTTPTAEDLKDILGSVGAEADDDRIQLLLSEVKGKDITELIASGRE 60

Query: 61  KLASVPSGGGAAMAVAAGGGGGGGGATPAAEESKKEEKVEEKEESDDVSFVKLYD 116
           KLASVP+GGG A+AVAA GGGGG  A PAA E+KKEEKVEEKEESDD     L+D
Sbjct: 61  KLASVPAGGGGAVAVAAXGGGGGAAAAPAAAEAKKEEKVEEKEESDDDMGFSLFD 115

[Close]

BLAST of CmaCh18G009390 vs. NCBI nr
Match: gi|720082507|ref|XP_010242613.1| (PREDICTED: 60S acidic ribosomal protein P2-like [Nelumbo nucifera])

HSP 1 Score: 154.8 bits (390), Expect = 1.2e-34
Identity = 90/115 (78.26%), Postives = 100/115 (86.96%), Query Frame = 1


Query: 1   MKIVAAYLLAVLGGNSSPSAKDLKNILGSVGAEVDDEKIELLLSSVKGKDVTELIASGRE 60
           MK++AAYLLAVLGGN+SPSA DLK+ILGSVGAE DD++IELLLS VKGKD+TELIASGRE
Sbjct: 1   MKVIAAYLLAVLGGNASPSADDLKDILGSVGAEADDDRIELLLSEVKGKDITELIASGRE 60

Query: 61  KLASVPSGGGAAMAVAAGGGGGGGGATPAAEESKKEEKVEEKEESDDVSFVKLYD 116
           KLASVPSGGGAA+AVAA GGGG   A PAA E KKEEKVEEKEESD+     L+D
Sbjct: 61  KLASVPSGGGAAIAVAA-GGGGAAAAAPAAAEPKKEEKVEEKEESDEDMGFSLFD 114

The following BLAST results are available for this feature:

BLAST of CmaCh18G009390 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RLA22_ARATH	2.3e-30	66.96	60S acidic ribosomal protein P2-2 OS=Arabidopsis thaliana GN=RPP2B PE=1 SV=1	[more]
RLA2_PARAR	4.0e-30	68.97	60S acidic ribosomal protein P2 OS=Parthenium argentatum PE=3 SV=1	[more]
RLA21_ARATH	8.8e-30	68.97	60S acidic ribosomal protein P2-1 OS=Arabidopsis thaliana GN=RPP2A PE=2 SV=2	[more]
RLA2B_MAIZE	1.1e-27	64.35	60S acidic ribosomal protein P2B OS=Zea mays GN=RPP2B PE=1 SV=1	[more]
RLA2A_MAIZE	2.4e-27	67.83	60S acidic ribosomal protein P2A OS=Zea mays GN=RPP2A PE=1 SV=3	[more]

BLAST of CmaCh18G009390 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KRE0_CUCSA	4.0e-37	82.61	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G615230 PE=3 SV=1	[more]
S8D2Z2_9LAMI	5.7e-36	78.99	Uncharacterized protein (Fragment) OS=Genlisea aurea GN=M569_00658 PE=3 SV=1	[more]
D7SN28_VITVI	1.8e-34	77.39	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0061g01600 PE=3 SV=...	[more]
A5AGQ2_VITVI	1.8e-34	77.39	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_003816 PE=3 SV=1	[more]
A0A0D2P4V1_GOSRA	2.4e-34	78.26	Uncharacterized protein OS=Gossypium raimondii GN=B456_004G008900 PE=3 SV=1	[more]

BLAST of CmaCh18G009390 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G27710.1	1.3e-31	66.96	60S acidic ribosomal protein family	[more]
AT3G44590.2	5.1e-28	64.35	60S acidic ribosomal protein family	[more]
AT2G27720.2	2.0e-27	60.31	60S acidic ribosomal protein family	[more]
AT5G40040.1	6.9e-25	59.48	60S acidic ribosomal protein family	[more]
AT3G28500.1	5.9e-24	56.03	60S acidic ribosomal protein family	[more]

BLAST of CmaCh18G009390 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659091858\|ref\|XP_008446770.1\|	1.5e-37	83.48	PREDICTED: 60S acidic ribosomal protein P2-4-like [Cucumis melo]	[more]
gi\|449465545\|ref\|XP_004150488.1\|	5.7e-37	82.61	PREDICTED: 60S acidic ribosomal protein P2-4 [Cucumis sativus]	[more]
gi\|527209363\|gb\|EPS74099.1\|	8.2e-36	78.99	hypothetical protein M569_00658, partial [Genlisea aurea]	[more]
gi\|657998699\|ref\|XP_008391761.1\|	7.0e-35	75.65	PREDICTED: 60S acidic ribosomal protein P2-2-like [Malus domestica]	[more]
gi\|720082507\|ref\|XP_010242613.1\|	1.2e-34	78.26	PREDICTED: 60S acidic ribosomal protein P2-like [Nelumbo nucifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR027534	Ribosomal_L12

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006414	translational elongation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006414	translational elongation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh18G009390.1	CmaCh18G009390.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027534	Ribosomal protein L12 family	HAMAP	MF_01478	Ribosomal_L12_arch	coord: 2..115 score: 15
None	No IPR available	PANTHER	PTHR21141	60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER	coord: 1..115 score: 2.3
None	No IPR available	PANTHER	PTHR21141:SF50	SUBFAMILY NOT NAMED	coord: 1..115 score: 2.3
None	No IPR available	PFAM	PF00428	Ribosomal_60s	coord: 17..107 score: 1.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh18G009390	Cucsa.309030	Cucumber (Gy14) v1	cgycmaB0849
CmaCh18G009390	Cla020498	Watermelon (97103) v1	cmawmB372
CmaCh18G009390	Csa5G615230	Cucumber (Chinese Long) v2	cmacuB417
CmaCh18G009390	MELO3C012359	Melon (DHL92) v3.5.1	cmameB351
CmaCh18G009390	ClCG05G021690	Watermelon (Charleston Gray)	cmawcgB364
CmaCh18G009390	CSPI05G26430	Wild cucumber (PI 183967)	cmacpiB423
CmaCh18G009390	CmoCh04G014990	Cucurbita moschata (Rifu)	cmacmoB420
CmaCh18G009390	CmoCh18G009430	Cucurbita moschata (Rifu)	cmacmoB406
CmaCh18G009390	Lsi04G001410	Bottle gourd (USVL1VR-Ls)	cmalsiB379
CmaCh18G009390	Cp4.1LG09g03800	Cucurbita pepo (Zucchini)	cmacpeB415
CmaCh18G009390	Cp4.1LG01g14310	Cucurbita pepo (Zucchini)	cmacpeB429
CmaCh18G009390	MELO3C012359.2	Melon (DHL92) v3.6.1	cmamedB408
CmaCh18G009390	CsaV3_5G035580	Cucumber (Chinese Long) v3	cmacucB0498
CmaCh18G009390	Cla97C05G103390	Watermelon (97103) v2	cmawmbB423
CmaCh18G009390	Bhi07G000646	Wax gourd	cmawgoB0544
CmaCh18G009390	CsGy6G012450	Cucumber (Gy14) v2	cgybcmaB770
CmaCh18G009390	CsGy5G025900	Cucumber (Gy14) v2	cgybcmaB626
CmaCh18G009390	Carg01912	Silver-seed gourd	carcmaB1167

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh18G009390	CmaCh04G014240	Cucurbita maxima (Rimu)	cmacmaB402

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh18G009390	Silver-seed gourd	carcmaB1456