Carg01912 (gene) Silver-seed gourd

Overview
NameCarg01912
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Description60S acidic ribosomal protein
LocationCucurbita_argyrosperma_scaffold_003 : 1089520 .. 1091313 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAGAATCAGAAACCCTACCTCTCGCCGCTATATAATATAATTTGAAGCCGTCGACTTCATTTACGGAACCCTAACTGAACTCTCTCATTTTCCTTCTCCTGATTCCGATTGGCTTCTGGTAAGGATGAAAATCGTAGCTGCTTATTTGCTCGCTGTTTTGGGAGGCAATGCCAGCCCTTCTGCTAAGGATTTGAAGGATATTCTCGGATCTGGTAAAGTCCGCATCTGGCTCTTTCCCCGCTTGTTTATTTTTTCGATTGATCATTAAGGTTTTTAAGGAATTTTTGGTTCGATGTTAGATTTATAGGATTGTTTTGTTATCTAGGTTATTGTTCTTTGATTCGCTTCGTTTCAATTCTTGTGTCAAGCTATGGAGTTTCGTTTTTTATGGTTTGTGGTAGCTATTGTTTGTTCTCTCTTCTTTTGTGCTGTTCGGCTTCAAATTTTATTAAATGATTATCGTTTTTTTTTTTTTTTGGAGTTAATACGTATTTGATTACTGATTGTCTTCATTATTGTCGTGCTTTAACGTGCTTTCTTTTAATAATCAATTTATGCTTGAGAAACAATAGGAAGAATGGCTGTTATCTGTGGCTGGATATGATTAGATTCTAATTATATGTAATTTGTGTCTATCCTACATTTTCTCGGTTGTCTAAGAGAATAGAGCAATTATACTTCAGACTGATTCTTAGGTTTAATTTGATATCCTTTAATTGTTGTTATTTGGAATGCTCATTTTCGATGCTTTTTTATGTTTTGAATCCACAATTCTTTTCTTCTAATGCAATGTTATATGTATGAATTTCATTTATCGCATTTGATTTGGATATTGAATTACTTGAAAGATTAATATTTCGAATGGTGTCATAATTCTCTTTCCGGAACTAATTTGCAGTTGGAGCGGAAGTTGATGAGGACAAAATCGAGCTTCTGATGTCTAGTGTTAAGGGTAAGGATATTACAGAGCTCATTGCATCCGGAAGAGAAAAGCTAGCATCTGTTCCTTCTGGTGGAGGTGCCGCTGTGGCAGTTGCCGCTGCTGGAGGTGGTGGCGGTGCGGCTGCCCCTGCTGCTGCAGAGTCAAAGAAAGAAGAGAAGGTTGAAGAGAAGGAGGAATCAGACGATGTAAGTTTCTTAAATCTTTATGAAAATGTTGCTTGGAATTGCATGTTAACAGTCGAAATTCTCACATTATTATTAACCAATGAAAGCAATAATCTGACAAAAATATATTCGAGGAAATGCCTAGAGATTCCCCACCTTATGAAACATTAAATGTTTGCCTGTATGGCCGAAAAACCTCACACAGAACAAAACATCTTTTCCTTAATTCACCATCTTTTTAGTTCATGTAATTTCTTCTAACTCCCTGTTTACTGTTTTGCAGGATATGGGCTTCAGTCTTTTCGATTAAGTATAATTACAAAGTCGAATGTTCAGAGATTCTTCAAGATTTTAGATTGGAATTTTTGTTTTCACAATGTAGTCTTTTTCCAACATTATCCCCGTGTTATGAGGAGCCGAATGTCGAATTTCTTTTCAGTTTATAAATTTAGTCTTAATTTTTTGGATGCTTTAAAACCAAACGCCTTTTTTATTATATCGAAAACAAGGAATTGCTGCTGCTATGGCATGAATTCGAAAAATTGGAGGCCATTGTGAATTTTCTGTTGCAGTTCCCTCTCCAACAACTAAAGATCATTTGCACAATTAATCAAAAGAAGATTGACCCACTTTGGGTGGGGTGTCTTCTCGAGTTCTTTTGGTTCTTCACAAGGAGAAACAGCAAGG

mRNA sequence

AAGAATCAGAAACCCTACCTCTCGCCGCTATATAATATAATTTGAAGCCGTCGACTTCATTTACGGAACCCTAACTGAACTCTCTCATTTTCCTTCTCCTGATTCCGATTGGCTTCTGGTAAGGATGAAAATCGTAGCTGCTTATTTGCTCGCTGTTTTGGGAGGCAATGCCAGCCCTTCTGCTAAGGATTTGAAGGATATTCTCGGATCTGTTGGAGCGGAAGTTGATGAGGACAAAATCGAGCTTCTGATGTCTAGTGTTAAGGGTAAGGATATTACAGAGCTCATTGCATCCGGAAGAGAAAAGCTAGCATCTGTTCCTTCTGGTGGAGGTGCCGCTGTGGCAGTTGCCGCTGCTGGAGGTGGTGGCGGTGCGGCTGCCCCTGCTGCTGCAGAGTCAAAGAAAGAAGAGAAGGTTGAAGAGAAGGAGGAATCAGACGATGATATGGGCTTCAGTCTTTTCGATTAAGTATAATTACAAAGTCGAATGTTCAGAGATTCTTCAAGATTTTAGATTGGAATTTTTGTTTTCACAATGTAGTCTTTTTCCAACATTATCCCCGTGTTATGAGGAGCCGAATGTCGAATTTCTTTTCAGTTTATAAATTTAGTCTTAATTTTTTGGATGCTTTAAAACCAAACGCCTTTTTTATTATATCGAAAACAAGGAATTGCTGCTGCTATGGCATGAATTCGAAAAATTGGAGGCCATTGTGAATTTTCTGTTGCAGTTCCCTCTCCAACAACTAAAGATCATTTGCACAATTAATCAAAAGAAGATTGACCCACTTTGGGTGGGGTGTCTTCTCGAGTTCTTTTGGTTCTTCACAAGGAGAAACAGCAAGG

Coding sequence (CDS)

ATGAAAATCGTAGCTGCTTATTTGCTCGCTGTTTTGGGAGGCAATGCCAGCCCTTCTGCTAAGGATTTGAAGGATATTCTCGGATCTGTTGGAGCGGAAGTTGATGAGGACAAAATCGAGCTTCTGATGTCTAGTGTTAAGGGTAAGGATATTACAGAGCTCATTGCATCCGGAAGAGAAAAGCTAGCATCTGTTCCTTCTGGTGGAGGTGCCGCTGTGGCAGTTGCCGCTGCTGGAGGTGGTGGCGGTGCGGCTGCCCCTGCTGCTGCAGAGTCAAAGAAAGAAGAGAAGGTTGAAGAGAAGGAGGAATCAGACGATGATATGGGCTTCAGTCTTTTCGATTAA

Protein sequence

MKIVAAYLLAVLGGNASPSAKDLKDILGSVGAEVDEDKIELLMSSVKGKDITELIASGREKLASVPSGGGAAVAVAAAGGGGGAAAPAAAESKKEEKVEEKEESDDDMGFSLFD
Homology
[Close]
BLAST of Carg01912 vs. NCBI nr
Match: XP_022957078.1 (60S acidic ribosomal protein P2-1-like [Cucurbita moschata] >XP_023533493.1 60S acidic ribosomal protein P2-1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 122.9 bits (307), Expect = 7.2e-25
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0 

Query: 1  MKIVAAYLLAVLGGNASPSAKDLKDILGSVGAEVDEDKIELLMSSVKGKDITELIASGRE 60
          MKIVAAYLLAVLGGNASPSAKDLKDILGSVGAEVDEDKIELLMSSVKGKDITELIASGRE
Sbjct: 1  MKIVAAYLLAVLGGNASPSAKDLKDILGSVGAEVDEDKIELLMSSVKGKDITELIASGRE 60

Query: 61 KLASVP 67
          KLASVP
Sbjct: 61 KLASVP 66

[Close]
BLAST of Carg01912 vs. NCBI nr
Match: XP_022984367.1 (60S acidic ribosomal protein P2-4-like [Cucurbita maxima])

HSP 1 Score: 122.9 bits (307), Expect = 7.2e-25
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0 

Query: 1  MKIVAAYLLAVLGGNASPSAKDLKDILGSVGAEVDEDKIELLMSSVKGKDITELIASGRE 60
          MKIVAAYLLAVLGGNASPSAKDLKDILGSVGAEVDEDKIELLMSSVKGKDITELIASGRE
Sbjct: 1  MKIVAAYLLAVLGGNASPSAKDLKDILGSVGAEVDEDKIELLMSSVKGKDITELIASGRE 60

Query: 61 KLASVP 67
          KLASVP
Sbjct: 61 KLASVP 66

[Close]
BLAST of Carg01912 vs. NCBI nr
Match: XP_008446770.1 (PREDICTED: 60S acidic ribosomal protein P2-4-like [Cucumis melo])

HSP 1 Score: 115.5 bits (288), Expect = 1.2e-22
Identity = 59/66 (89.39%), Postives = 65/66 (98.48%), Query Frame = 0 

Query: 1  MKIVAAYLLAVLGGNASPSAKDLKDILGSVGAEVDEDKIELLMSSVKGKDITELIASGRE 60
          MKIVAAYLLAVLGGN SPSAKDLKDILGSVGAE+DE++IELL+S+VKGKD+TELIASGRE
Sbjct: 1  MKIVAAYLLAVLGGNTSPSAKDLKDILGSVGAEIDEERIELLLSNVKGKDVTELIASGRE 60

Query: 61 KLASVP 67
          KLASVP
Sbjct: 61 KLASVP 66

[Close]
BLAST of Carg01912 vs. NCBI nr
Match: XP_022945075.1 (60S acidic ribosomal protein P2-2-like [Cucurbita moschata])

HSP 1 Score: 115.5 bits (288), Expect = 1.2e-22
Identity = 60/66 (90.91%), Postives = 66/66 (100.00%), Query Frame = 0 

Query: 1  MKIVAAYLLAVLGGNASPSAKDLKDILGSVGAEVDEDKIELLMSSVKGKDITELIASGRE 60
          MKIVAAYLLAVLGGN+SPSAKDLK+ILGSVGAEVD++KIELL+SSVKGKD+TELIASGRE
Sbjct: 1  MKIVAAYLLAVLGGNSSPSAKDLKNILGSVGAEVDDEKIELLLSSVKGKDVTELIASGRE 60

Query: 61 KLASVP 67
          KLASVP
Sbjct: 61 KLASVP 66

[Close]
BLAST of Carg01912 vs. NCBI nr
Match: XP_022968573.1 (60S acidic ribosomal protein P2-2-like [Cucurbita maxima])

HSP 1 Score: 115.5 bits (288), Expect = 1.2e-22
Identity = 60/66 (90.91%), Postives = 66/66 (100.00%), Query Frame = 0 

Query: 1  MKIVAAYLLAVLGGNASPSAKDLKDILGSVGAEVDEDKIELLMSSVKGKDITELIASGRE 60
          MKIVAAYLLAVLGGN+SPSAKDLK+ILGSVGAEVD++KIELL+SSVKGKD+TELIASGRE
Sbjct: 1  MKIVAAYLLAVLGGNSSPSAKDLKNILGSVGAEVDDEKIELLLSSVKGKDVTELIASGRE 60

Query: 61 KLASVP 67
          KLASVP
Sbjct: 61 KLASVP 66

[Close]
BLAST of Carg01912 vs. TAIR10
Match: AT3G44590.2 (60S acidic ribosomal protein family)

HSP 1 Score: 95.9 bits (237), Expect = 1.7e-20
Identity = 48/66 (72.73%), Postives = 58/66 (87.88%), Query Frame = 0 

Query: 1  MKIVAAYLLAVLGGNASPSAKDLKDILGSVGAEVDEDKIELLMSSVKGKDITELIASGRE 60
          MK+ AA+LLAVLGGNA+PSA ++KDI+G+VGA+VD + IELL+  V GKDI ELIASGRE
Sbjct: 1  MKVAAAFLLAVLGGNANPSADNIKDIIGAVGADVDGESIELLLKEVSGKDIAELIASGRE 60

Query: 61 KLASVP 67
          KLASVP
Sbjct: 61 KLASVP 66

[Close]
BLAST of Carg01912 vs. TAIR10
Match: AT2G27710.1 (60S acidic ribosomal protein family)

HSP 1 Score: 93.6 bits (231), Expect = 8.5e-20
Identity = 47/66 (71.21%), Postives = 57/66 (86.36%), Query Frame = 0 

Query: 1  MKIVAAYLLAVLGGNASPSAKDLKDILGSVGAEVDEDKIELLMSSVKGKDITELIASGRE 60
          MK+VAAYLLAVL G ASP++ D+K ILGSVGAE ++ +IELL+  VKGKD+ ELIA+GRE
Sbjct: 1  MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 61 KLASVP 67
          KLASVP
Sbjct: 61 KLASVP 66

[Close]
BLAST of Carg01912 vs. TAIR10
Match: AT3G28500.1 (60S acidic ribosomal protein family)

HSP 1 Score: 82.4 bits (202), Expect = 2.0e-16
Identity = 40/64 (62.50%), Postives = 54/64 (84.38%), Query Frame = 0 

Query: 1  MKIVAAYLLAVLGGNASPSAKDLKDILGSVGAEVDEDKIELLMSSVKGKDITELIASGRE 60
          MK++AA+LLA LGGN +P++ DLK IL SVGAE+DE KI+LL S +K  D+TELIA+GRE
Sbjct: 1  MKVIAAFLLAKLGGNENPTSNDLKKILESVGAEIDETKIDLLFSLIKDHDVTELIAAGRE 60

Query: 61 KLAS 65
          K+++
Sbjct: 61 KMSA 64

[Close]
BLAST of Carg01912 vs. TAIR10
Match: AT2G27720.2 (60S acidic ribosomal protein family)

HSP 1 Score: 82.0 bits (201), Expect = 2.6e-16
Identity = 46/81 (56.79%), Postives = 56/81 (69.14%), Query Frame = 0 

Query: 1  MKIVAAYLLAVLGGNASPSAKDLKDILGS---------------VGAEVDEDKIELLMSS 60
          MK+VAA+LLAVL G ASP+  D+KDILGS                GAE ++ +IELL+  
Sbjct: 1  MKVVAAFLLAVLSGKASPTTGDIKDILGSGIMVLVLDCVVIGDCFGAETEDSQIELLLKE 60

Query: 61 VKGKDITELIASGREKLASVP 67
          VKGKD+ ELIA+GREKLASVP
Sbjct: 61 VKGKDLAELIAAGREKLASVP 81

[Close]
BLAST of Carg01912 vs. TAIR10
Match: AT5G40040.1 (60S acidic ribosomal protein family)

HSP 1 Score: 79.0 bits (193), Expect = 2.2e-15
Identity = 39/62 (62.90%), Postives = 50/62 (80.65%), Query Frame = 0 

Query: 1  MKIVAAYLLAVLGGNASPSAKDLKDILGSVGAEVDEDKIELLMSSVKGKDITELIASGRE 60
          MK+VAAYLLA L GN +PS  DLK I+ SVGAE+D++KI+L  S +K +D+TELIA GRE
Sbjct: 1  MKVVAAYLLAKLSGNENPSVADLKKIVESVGAEIDQEKIDLFFSLIKDRDVTELIAVGRE 60

Query: 61 KL 63
          K+
Sbjct: 61 KM 62

[Close]
BLAST of Carg01912 vs. Swiss-Prot
Match: sp|P41099|RLA2_PARAR (60S acidic ribosomal protein P2 OS=Parthenium argentatum OX=35935 PE=3 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.3e-20
Identity = 50/66 (75.76%), Postives = 60/66 (90.91%), Query Frame = 0 

Query: 1  MKIVAAYLLAVLGGNASPSAKDLKDILGSVGAEVDEDKIELLMSSVKGKDITELIASGRE 60
          MK++AA+LLA+LGGN SP+ +DLK IL SVGA+ D+DKIELL+S VKGKDITELIASGRE
Sbjct: 1  MKVIAAFLLALLGGNTSPTDEDLKSILASVGADADDDKIELLLSQVKGKDITELIASGRE 60

Query: 61 KLASVP 67
          +LASVP
Sbjct: 61 RLASVP 66

[Close]
BLAST of Carg01912 vs. Swiss-Prot
Match: sp|Q9LXM8|RLA24_ARATH (60S acidic ribosomal protein P2-4 OS=Arabidopsis thaliana OX=3702 GN=RPP2D PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 3.1e-19
Identity = 48/66 (72.73%), Postives = 58/66 (87.88%), Query Frame = 0 

Query: 1  MKIVAAYLLAVLGGNASPSAKDLKDILGSVGAEVDEDKIELLMSSVKGKDITELIASGRE 60
          MK+ AA+LLAVLGGNA+PSA ++KDI+G+VGA+VD + IELL+  V GKDI ELIASGRE
Sbjct: 1  MKVAAAFLLAVLGGNANPSADNIKDIIGAVGADVDGESIELLLKEVSGKDIAELIASGRE 60

Query: 61 KLASVP 67
          KLASVP
Sbjct: 61 KLASVP 66

[Close]
BLAST of Carg01912 vs. Swiss-Prot
Match: sp|P51407|RLA21_ARATH (60S acidic ribosomal protein P2-1 OS=Arabidopsis thaliana OX=3702 GN=RPP2A PE=3 SV=2)

HSP 1 Score: 94.0 bits (232), Expect = 1.2e-18
Identity = 47/66 (71.21%), Postives = 57/66 (86.36%), Query Frame = 0 

Query: 1  MKIVAAYLLAVLGGNASPSAKDLKDILGSVGAEVDEDKIELLMSSVKGKDITELIASGRE 60
          MK+VAA+LLAVL G ASP+  D+KDILGSVGAE ++ +IELL+  VKGKD+ ELIA+GRE
Sbjct: 1  MKVVAAFLLAVLSGKASPTTGDIKDILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 61 KLASVP 67
          KLASVP
Sbjct: 61 KLASVP 66

[Close]
BLAST of Carg01912 vs. Swiss-Prot
Match: sp|Q9SLF7|RLA22_ARATH (60S acidic ribosomal protein P2-2 OS=Arabidopsis thaliana OX=3702 GN=RPP2B PE=1 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.5e-18
Identity = 47/66 (71.21%), Postives = 57/66 (86.36%), Query Frame = 0 

Query: 1  MKIVAAYLLAVLGGNASPSAKDLKDILGSVGAEVDEDKIELLMSSVKGKDITELIASGRE 60
          MK+VAAYLLAVL G ASP++ D+K ILGSVGAE ++ +IELL+  VKGKD+ ELIA+GRE
Sbjct: 1  MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 61 KLASVP 67
          KLASVP
Sbjct: 61 KLASVP 66

[Close]
BLAST of Carg01912 vs. Swiss-Prot
Match: sp|P46252|RLA2A_MAIZE (60S acidic ribosomal protein P2A OS=Zea mays OX=4577 GN=RPP2A PE=1 SV=3)

HSP 1 Score: 93.6 bits (231), Expect = 1.5e-18
Identity = 50/66 (75.76%), Postives = 55/66 (83.33%), Query Frame = 0 

Query: 1  MKIVAAYLLAVLGGNASPSAKDLKDILGSVGAEVDEDKIELLMSSVKGKDITELIASGRE 60
          MK VAAYLLAVL GNASPSA DL  IL SVG EVD +K+ELL+S + GKDITELIA+GRE
Sbjct: 1  MKFVAAYLLAVLAGNASPSADDLTAILESVGCEVDNEKMELLLSQLSGKDITELIAAGRE 60

Query: 61 KLASVP 67
          K ASVP
Sbjct: 61 KFASVP 66

[Close]
BLAST of Carg01912 vs. TrEMBL
Match: tr|A0A1S3BFW0|A0A1S3BFW0_CUCME (60S acidic ribosomal protein P2-4-like OS=Cucumis melo OX=3656 GN=LOC103489399 PE=3 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 7.6e-23
Identity = 59/66 (89.39%), Postives = 65/66 (98.48%), Query Frame = 0 

Query: 1  MKIVAAYLLAVLGGNASPSAKDLKDILGSVGAEVDEDKIELLMSSVKGKDITELIASGRE 60
          MKIVAAYLLAVLGGN SPSAKDLKDILGSVGAE+DE++IELL+S+VKGKD+TELIASGRE
Sbjct: 1  MKIVAAYLLAVLGGNTSPSAKDLKDILGSVGAEIDEERIELLLSNVKGKDVTELIASGRE 60

Query: 61 KLASVP 67
          KLASVP
Sbjct: 61 KLASVP 66

[Close]
BLAST of Carg01912 vs. TrEMBL
Match: tr|A0A0A0KRE0|A0A0A0KRE0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G615230 PE=3 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 2.9e-22
Identity = 59/66 (89.39%), Postives = 65/66 (98.48%), Query Frame = 0 

Query: 1  MKIVAAYLLAVLGGNASPSAKDLKDILGSVGAEVDEDKIELLMSSVKGKDITELIASGRE 60
          MKIVAAYLLAVLGGN++PSAKDLKDILGSVGAEVDE++I LL+S+VKGKDITELIASGRE
Sbjct: 1  MKIVAAYLLAVLGGNSNPSAKDLKDILGSVGAEVDEERINLLLSNVKGKDITELIASGRE 60

Query: 61 KLASVP 67
          KLASVP
Sbjct: 61 KLASVP 66

[Close]
BLAST of Carg01912 vs. TrEMBL
Match: tr|A0A1U7YTX1|A0A1U7YTX1_NELNU (60S acidic ribosomal protein P2-like OS=Nelumbo nucifera OX=4432 GN=LOC104586918 PE=3 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 3.8e-22
Identity = 58/66 (87.88%), Postives = 63/66 (95.45%), Query Frame = 0 

Query: 1  MKIVAAYLLAVLGGNASPSAKDLKDILGSVGAEVDEDKIELLMSSVKGKDITELIASGRE 60
          MK++AAYLLAVLGGNASPSA DLKDILGSVGAE D+D+IELL+S VKGKDITELIASGRE
Sbjct: 1  MKVIAAYLLAVLGGNASPSADDLKDILGSVGAEADDDRIELLLSEVKGKDITELIASGRE 60

Query: 61 KLASVP 67
          KLASVP
Sbjct: 61 KLASVP 66

[Close]
BLAST of Carg01912 vs. TrEMBL
Match: tr|A0A2I4EF58|A0A2I4EF58_9ROSI (60S acidic ribosomal protein P2-like OS=Juglans regia OX=51240 GN=LOC108989045 PE=3 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 4.9e-22
Identity = 58/66 (87.88%), Postives = 64/66 (96.97%), Query Frame = 0 

Query: 1  MKIVAAYLLAVLGGNASPSAKDLKDILGSVGAEVDEDKIELLMSSVKGKDITELIASGRE 60
          MK++AAYLLAVLGGN SPSA++LKDILGSVGAEVD+DKIELL+S VKGKDITELIASGRE
Sbjct: 1  MKVIAAYLLAVLGGNISPSAENLKDILGSVGAEVDDDKIELLLSEVKGKDITELIASGRE 60

Query: 61 KLASVP 67
          KLASVP
Sbjct: 61 KLASVP 66

[Close]
BLAST of Carg01912 vs. TrEMBL
Match: tr|A0A2I4HB20|A0A2I4HB20_9ROSI (60S acidic ribosomal protein P2-like OS=Juglans regia OX=51240 GN=LOC109015327 PE=3 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 4.9e-22
Identity = 58/66 (87.88%), Postives = 64/66 (96.97%), Query Frame = 0 

Query: 1  MKIVAAYLLAVLGGNASPSAKDLKDILGSVGAEVDEDKIELLMSSVKGKDITELIASGRE 60
          MK++AAYLLAVLGGN SPSA++LKDILGSVGAEVD+DKIELL+S VKGKDITELIASGRE
Sbjct: 1  MKVIAAYLLAVLGGNISPSAENLKDILGSVGAEVDDDKIELLLSEVKGKDITELIASGRE 60

Query: 61 KLASVP 67
          KLASVP
Sbjct: 61 KLASVP 66

The following BLAST results are available for this feature:
BLAST of Carg01912 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022957078.17.2e-25100.0060S acidic ribosomal protein P2-1-like [Cucurbita moschata] >XP_023533493.1 60S ... [more]
XP_022984367.17.2e-25100.0060S acidic ribosomal protein P2-4-like [Cucurbita maxima][more]
XP_008446770.11.2e-2289.39PREDICTED: 60S acidic ribosomal protein P2-4-like [Cucumis melo][more]
XP_022945075.11.2e-2290.9160S acidic ribosomal protein P2-2-like [Cucurbita moschata][more]
XP_022968573.11.2e-2290.9160S acidic ribosomal protein P2-2-like [Cucurbita maxima][more]
BLAST of Carg01912 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G44590.21.7e-2072.7360S acidic ribosomal protein family[more]
AT2G27710.18.5e-2071.2160S acidic ribosomal protein family[more]
AT3G28500.12.0e-1662.5060S acidic ribosomal protein family[more]
AT2G27720.22.6e-1656.7960S acidic ribosomal protein family[more]
AT5G40040.12.2e-1562.9060S acidic ribosomal protein family[more]
BLAST of Carg01912 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|P41099|RLA2_PARAR1.3e-2075.7660S acidic ribosomal protein P2 OS=Parthenium argentatum OX=35935 PE=3 SV=1[more]
sp|Q9LXM8|RLA24_ARATH3.1e-1972.7360S acidic ribosomal protein P2-4 OS=Arabidopsis thaliana OX=3702 GN=RPP2D PE=3 ... [more]
sp|P51407|RLA21_ARATH1.2e-1871.2160S acidic ribosomal protein P2-1 OS=Arabidopsis thaliana OX=3702 GN=RPP2A PE=3 ... [more]
sp|Q9SLF7|RLA22_ARATH1.5e-1871.2160S acidic ribosomal protein P2-2 OS=Arabidopsis thaliana OX=3702 GN=RPP2B PE=1 ... [more]
sp|P46252|RLA2A_MAIZE1.5e-1875.7660S acidic ribosomal protein P2A OS=Zea mays OX=4577 GN=RPP2A PE=1 SV=3[more]
BLAST of Carg01912 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BFW0|A0A1S3BFW0_CUCME7.6e-2389.3960S acidic ribosomal protein P2-4-like OS=Cucumis melo OX=3656 GN=LOC103489399 P... [more]
tr|A0A0A0KRE0|A0A0A0KRE0_CUCSA2.9e-2289.39Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G615230 PE=3 SV=1[more]
tr|A0A1U7YTX1|A0A1U7YTX1_NELNU3.8e-2287.8860S acidic ribosomal protein P2-like OS=Nelumbo nucifera OX=4432 GN=LOC104586918... [more]
tr|A0A2I4EF58|A0A2I4EF58_9ROSI4.9e-2287.8860S acidic ribosomal protein P2-like OS=Juglans regia OX=51240 GN=LOC108989045 P... [more]
tr|A0A2I4HB20|A0A2I4HB20_9ROSI4.9e-2287.8860S acidic ribosomal protein P2-like OS=Juglans regia OX=51240 GN=LOC109015327 P... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006414translational elongation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: INTERPRO
TermDefinition
IPR027534Ribosomal_L12
IPR038716P1/P2_N_sf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006414 translational elongation
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg01912-RACarg01912-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038716Ribosomal protein P1/P2, N-terminal domainGENE3DG3DSA:1.10.10.1410coord: 1..59
e-value: 2.4E-27
score: 96.8
NoneNo IPR availablePFAMPF00428Ribosomal_60scoord: 17..113
e-value: 1.8E-25
score: 89.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 78..114
NoneNo IPR availablePANTHERPTHR2114160S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBERcoord: 1..114
NoneNo IPR availablePANTHERPTHR21141:SF7260S ACIDIC RIBOSOMAL PROTEIN P2-1-RELATEDcoord: 1..114
NoneNo IPR availableCDDcd05833Ribosomal_P2coord: 1..114
e-value: 8.69063E-32
score: 108.89
IPR027534Ribosomal protein L12 familyHAMAPMF_01478Ribosomal_L12_archcoord: 2..114
score: 17.255

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg01912Cla020498Watermelon (97103) v1carwmB0842
Carg01912Csa5G615230Cucumber (Chinese Long) v2carcuB0857
Carg01912MELO3C012359Melon (DHL92) v3.5.1carmeB0834
Carg01912ClCG05G021690Watermelon (Charleston Gray)carwcgB0816
Carg01912CSPI05G26430Wild cucumber (PI 183967)carcpiB0877
Carg01912Cucsa.309030Cucumber (Gy14) v1carcgyB0969
Carg01912CmaCh04G014240Cucurbita maxima (Rimu)carcmaB1170
Carg01912CmaCh18G009390Cucurbita maxima (Rimu)carcmaB1167
Carg01912CmoCh04G014990Cucurbita moschata (Rifu)carcmoB1138
Carg01912CmoCh18G009430Cucurbita moschata (Rifu)carcmoB1135
Carg01912Lsi04G001410Bottle gourd (USVL1VR-Ls)carlsiB767
Carg01912Cp4.1LG09g03800Cucurbita pepo (Zucchini)carcpeB1169
Carg01912Cp4.1LG01g14310Cucurbita pepo (Zucchini)carcpeB1177
Carg01912CsGy5G025900Cucumber (Gy14) v2carcgybB0831
Carg01912MELO3C012359.2Melon (DHL92) v3.6.1carmedB0846
Carg01912CsaV3_5G035580Cucumber (Chinese Long) v3carcucB0881
Carg01912Cla97C05G103390Watermelon (97103) v2carwmbB0878
Carg01912Bhi07G000646Wax gourdcarwgoB0979
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg01912Silver-seed gourdcarcarB629
Carg01912Cucurbita maxima (Rimu)carcmaB1168
Carg01912Cucurbita moschata (Rifu)carcmoB1136
Carg01912Cucurbita pepo (Zucchini)carcpeB1176
Carg01912Bottle gourd (USVL1VR-Ls)carlsiB769
Carg01912Watermelon (Charleston Gray)carwcgB0819
Carg01912Watermelon (97103) v1carwmB0838