Cp4.1LG05g04730 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG05g04730
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionPre-mRNA branch site p14-like protein
LocationCp4.1LG05 : 2740570 .. 2740947 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCACATTCAGTCTTCCCCGCAAGGGAAACACGAGGCTGCCGCCGGAGGTCAACAGAGTTTTGTATGTACGAAATTTGCCCTTCAACATTACCAGCGAAGAGATGTACGATATATTCGGCAAGTACGGGGCGATTCGGCAGATCCGGATTGGAACGAACAAGGATACTAGAGGTACCGCCTTTGTTGTTTACGAGGATATCTATGATGCTAAGACGGCGGTGGATCATCTCTCCGGTTTCAACGTTGCGAATCGGTATCTGATCGTGTTGTACTACCAGCAGGCCAAGATGAGTAAAAAGTTCGATCAGAAGAAGAAAGAGGATGAAATTGCTAGGATGCAGGAGAAGTACGGGGTTTCTACGAAAGATAAGTAA

mRNA sequence

ATGGCCACATTCAGTCTTCCCCGCAAGGGAAACACGAGGCTGCCGCCGGAGGTCAACAGAGTTTTGTATGTACGAAATTTGCCCTTCAACATTACCAGCGAAGAGATGTACGATATATTCGGCAAGTACGGGGCGATTCGGCAGATCCGGATTGGAACGAACAAGGATACTAGAGGTACCGCCTTTGTTGTTTACGAGGATATCTATGATGCTAAGACGGCGGTGGATCATCTCTCCGGTTTCAACGTTGCGAATCGGTATCTGATCGTGTTGTACTACCAGCAGGCCAAGATGAGTAAAAAGTTCGATCAGAAGAAGAAAGAGGATGAAATTGCTAGGATGCAGGAGAAGTACGGGGTTTCTACGAAAGATAAGTAA

Coding sequence (CDS)

ATGGCCACATTCAGTCTTCCCCGCAAGGGAAACACGAGGCTGCCGCCGGAGGTCAACAGAGTTTTGTATGTACGAAATTTGCCCTTCAACATTACCAGCGAAGAGATGTACGATATATTCGGCAAGTACGGGGCGATTCGGCAGATCCGGATTGGAACGAACAAGGATACTAGAGGTACCGCCTTTGTTGTTTACGAGGATATCTATGATGCTAAGACGGCGGTGGATCATCTCTCCGGTTTCAACGTTGCGAATCGGTATCTGATCGTGTTGTACTACCAGCAGGCCAAGATGAGTAAAAAGTTCGATCAGAAGAAGAAAGAGGATGAAATTGCTAGGATGCAGGAGAAGTACGGGGTTTCTACGAAAGATAAGTAA

Protein sequence

MATFSLPRKGNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDEIARMQEKYGVSTKDK
Homology
[Close]
BLAST of Cp4.1LG05g04730 vs. Swiss-Prot
Match: SF3B6_ARATH (Splicing factor 3B subunit 6-like protein OS=Arabidopsis thaliana GN=At5g12190 PE=2 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 1.5e-56
Identity = 111/125 (88.80%), Postives = 115/125 (92.00%), Query Frame = 1 

Query: 1   MATFSLPRKGNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT 60
           M T SL RK NTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIG +K T+GT
Sbjct: 1   MTTISL-RKSNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGCDKATKGT 60

Query: 61  AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDEIARMQEKYGV 120
           AFVVYEDIYDAK AVDHLSGFNVANRYLIVLYYQ AKMSKKFDQKK EDEI ++QEKYGV
Sbjct: 61  AFVVYEDIYDAKNAVDHLSGFNVANRYLIVLYYQHAKMSKKFDQKKSEDEITKLQEKYGV 120

Query: 121 STKDK 126
           STKDK
Sbjct: 121 STKDK 124

[Close]
BLAST of Cp4.1LG05g04730 vs. Swiss-Prot
Match: SF3B6_MOUSE (Splicing factor 3B subunit 6 OS=Mus musculus GN=Sf3b6 PE=1 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 1.1e-41
Identity = 76/115 (66.09%), Postives = 96/115 (83.48%), Query Frame = 1 

Query: 8   RKGNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGTAFVVYED 67
           ++ N RLPPEVNR+LY+RNLP+ IT+EEMYDIFGKYG IRQIR+G   +TRGTA+VVYED
Sbjct: 7   KRANIRLPPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYED 66

Query: 68  IYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDEIARMQEKYGVST 123
           I+DAK A DHLSGFNV NRYL+VLYY   +  +K D KKKE+++  ++EKYG++T
Sbjct: 67  IFDAKNACDHLSGFNVCNRYLVVLYYNANRAFQKMDTKKKEEQLKLLKEKYGINT 121

[Close]
BLAST of Cp4.1LG05g04730 vs. Swiss-Prot
Match: SF3B6_HUMAN (Splicing factor 3B subunit 6 OS=Homo sapiens GN=SF3B6 PE=1 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 1.1e-41
Identity = 76/115 (66.09%), Postives = 96/115 (83.48%), Query Frame = 1 

Query: 8   RKGNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGTAFVVYED 67
           ++ N RLPPEVNR+LY+RNLP+ IT+EEMYDIFGKYG IRQIR+G   +TRGTA+VVYED
Sbjct: 7   KRANIRLPPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYED 66

Query: 68  IYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDEIARMQEKYGVST 123
           I+DAK A DHLSGFNV NRYL+VLYY   +  +K D KKKE+++  ++EKYG++T
Sbjct: 67  IFDAKNACDHLSGFNVCNRYLVVLYYNANRAFQKMDTKKKEEQLKLLKEKYGINT 121

[Close]
BLAST of Cp4.1LG05g04730 vs. Swiss-Prot
Match: SF3B6_DROME (Splicing factor 3B subunit 6-like protein OS=Drosophila melanogaster GN=CG13298 PE=1 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 4.5e-40
Identity = 76/117 (64.96%), Postives = 95/117 (81.20%), Query Frame = 1 

Query: 8   RKGNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGTAFVVYED 67
           ++ + RLPPEVNR+LYVRNLP+ ITS+EMYDIFGK+GAIRQIR+G   +TRGTAFVVYED
Sbjct: 3   KRNHIRLPPEVNRLLYVRNLPYKITSDEMYDIFGKFGAIRQIRVGNTPETRGTAFVVYED 62

Query: 68  IYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDEIARMQEKYGVSTKD 125
           I+DAK A DHLSGFNV NRYL+VLYYQ  K  K+ D  KK++E+  ++ KY + T +
Sbjct: 63  IFDAKNACDHLSGFNVCNRYLVVLYYQSNKAFKRVDMDKKQEELNNIKAKYNLKTPE 119

[Close]
BLAST of Cp4.1LG05g04730 vs. Swiss-Prot
Match: SF3B6_CAEEL (Splicing factor 3B subunit 6-like protein OS=Caenorhabditis elegans GN=C50D2.5 PE=3 SV=2)

HSP 1 Score: 156.4 bits (394), Expect = 2.1e-37
Identity = 68/108 (62.96%), Postives = 92/108 (85.19%), Query Frame = 1 

Query: 13  RLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGTAFVVYEDIYDAK 72
           +LPPEVNR+LY++NLP+ IT+EEMY+IFGK+GA+RQIR+G   +TRGTAFVVYEDI+DAK
Sbjct: 12  KLPPEVNRILYIKNLPYKITTEEMYEIFGKFGAVRQIRVGNTAETRGTAFVVYEDIFDAK 71

Query: 73  TAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDEIARMQEKYGV 121
           TA +HLSG+NV+NRYL+VLYYQ  K  K+ D +K   ++  ++E+YG+
Sbjct: 72  TACEHLSGYNVSNRYLVVLYYQATKAWKRMDTEKARTKLEDIKERYGI 119

[Close]
BLAST of Cp4.1LG05g04730 vs. TrEMBL
Match: A0A0A0KI93_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G430680 PE=4 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 2.6e-63
Identity = 123/125 (98.40%), Postives = 125/125 (100.00%), Query Frame = 1 

Query: 1   MATFSLPRKGNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT 60
           MATFSLPRKGNTRLPPEVNRVL+VRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT
Sbjct: 1   MATFSLPRKGNTRLPPEVNRVLFVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT 60

Query: 61  AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDEIARMQEKYGV 120
           AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDE+ARMQEKYGV
Sbjct: 61  AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDELARMQEKYGV 120

Query: 121 STKDK 126
           STKDK
Sbjct: 121 STKDK 125

[Close]
BLAST of Cp4.1LG05g04730 vs. TrEMBL
Match: B7FGI3_MEDTR (Pre-mRNA branch site p14-like protein OS=Medicago truncatula GN=MTR_5g089300 PE=2 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 1.2e-60
Identity = 122/125 (97.60%), Postives = 122/125 (97.60%), Query Frame = 1 

Query: 1   MATFSLPRKGNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT 60
           M T SL RKGNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT
Sbjct: 1   MTTISL-RKGNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT 60

Query: 61  AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDEIARMQEKYGV 120
           AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDEIARMQEKYGV
Sbjct: 61  AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDEIARMQEKYGV 120

Query: 121 STKDK 126
           STKDK
Sbjct: 121 STKDK 124

[Close]
BLAST of Cp4.1LG05g04730 vs. TrEMBL
Match: A0A0L9UUV9_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan07g035900 PE=4 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 1.6e-60
Identity = 122/125 (97.60%), Postives = 122/125 (97.60%), Query Frame = 1 

Query: 1   MATFSLPRKGNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT 60
           MA  SL RKGNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT
Sbjct: 1   MAAISL-RKGNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT 60

Query: 61  AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDEIARMQEKYGV 120
           AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDEIARMQEKYGV
Sbjct: 61  AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDEIARMQEKYGV 120

Query: 121 STKDK 126
           STKDK
Sbjct: 121 STKDK 124

[Close]
BLAST of Cp4.1LG05g04730 vs. TrEMBL
Match: A0A0S3RK02_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.03G048500 PE=4 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 1.6e-60
Identity = 122/125 (97.60%), Postives = 122/125 (97.60%), Query Frame = 1 

Query: 1   MATFSLPRKGNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT 60
           MA  SL RKGNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT
Sbjct: 1   MAAISL-RKGNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT 60

Query: 61  AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDEIARMQEKYGV 120
           AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDEIARMQEKYGV
Sbjct: 61  AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDEIARMQEKYGV 120

Query: 121 STKDK 126
           STKDK
Sbjct: 121 STKDK 124

[Close]
BLAST of Cp4.1LG05g04730 vs. TrEMBL
Match: A0A151U1T1_CAJCA (Pre-mRNA branch site p14-like protein OS=Cajanus cajan GN=KK1_005861 PE=4 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 1.6e-60
Identity = 122/125 (97.60%), Postives = 122/125 (97.60%), Query Frame = 1 

Query: 1   MATFSLPRKGNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT 60
           MA  SL RKGNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT
Sbjct: 1   MAAISL-RKGNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT 60

Query: 61  AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDEIARMQEKYGV 120
           AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDEIARMQEKYGV
Sbjct: 61  AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDEIARMQEKYGV 120

Query: 121 STKDK 126
           STKDK
Sbjct: 121 STKDK 124

[Close]
BLAST of Cp4.1LG05g04730 vs. TAIR10
Match: AT5G12190.1 (AT5G12190.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 219.9 bits (559), Expect = 8.6e-58
Identity = 111/125 (88.80%), Postives = 115/125 (92.00%), Query Frame = 1 

Query: 1   MATFSLPRKGNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT 60
           M T SL RK NTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIG +K T+GT
Sbjct: 1   MTTISL-RKSNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGCDKATKGT 60

Query: 61  AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDEIARMQEKYGV 120
           AFVVYEDIYDAK AVDHLSGFNVANRYLIVLYYQ AKMSKKFDQKK EDEI ++QEKYGV
Sbjct: 61  AFVVYEDIYDAKNAVDHLSGFNVANRYLIVLYYQHAKMSKKFDQKKSEDEITKLQEKYGV 120

Query: 121 STKDK 126
           STKDK
Sbjct: 121 STKDK 124

[Close]
BLAST of Cp4.1LG05g04730 vs. TAIR10
Match: AT2G14870.1 (AT2G14870.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 112.8 bits (281), Expect = 1.5e-25
Identity = 51/70 (72.86%), Postives = 59/70 (84.29%), Query Frame = 1 

Query: 9  KGNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGTAFVVYEDI 68
          K N RLPPEV R+LY+ NLPF+ITSE+ YD+FG+Y  IRQ+RIG  K T+GTAFVVYEDI
Sbjct: 9  KQNPRLPPEVTRLLYICNLPFSITSEDTYDLFGRYSTIRQVRIGCEKGTKGTAFVVYEDI 68

Query: 69 YDAKTAVDHL 79
          YDAK AVDHL
Sbjct: 69 YDAKKAVDHL 78

[Close]
BLAST of Cp4.1LG05g04730 vs. TAIR10
Match: AT4G02430.2 (AT4G02430.2 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 52.0 bits (123), Expect = 3.1e-07
Identity = 27/72 (37.50%), Postives = 39/72 (54.17%), Query Frame = 1 

Query: 19 NRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGTAFVVYEDIYDAKTAVDHL 78
          +R +YV NLP +I   E+ D+F KYG + QI +       G AFV +ED  DA  A+   
Sbjct: 6  SRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDAIYGR 65

Query: 79 SGFNVANRYLIV 91
           G++    +L V
Sbjct: 66 DGYDFDGHHLRV 77

[Close]
BLAST of Cp4.1LG05g04730 vs. TAIR10
Match: AT5G07290.1 (AT5G07290.1 MEI2-like 4)

HSP 1 Score: 50.8 bits (120), Expect = 6.9e-07
Identity = 27/85 (31.76%), Postives = 50/85 (58.82%), Query Frame = 1 

Query: 4   FSLPRKGNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGTAFV 63
           +S+P++       E    L+V NL  +I++EE++ IF  YG IR++R   +++++   ++
Sbjct: 281 YSIPKENPKENSSE--GALWVNNLDSSISNEELHGIFSSYGEIREVRRTMHENSQ--VYI 340

Query: 64  VYEDIYDAKTAVDHLSGFNVANRYL 89
            + D+  AK A+  L+G  VA R L
Sbjct: 341 EFFDVRKAKVALQGLNGLEVAGRQL 361

[Close]
BLAST of Cp4.1LG05g04730 vs. TAIR10
Match: AT1G02840.1 (AT1G02840.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 50.4 bits (119), Expect = 9.0e-07
Identity = 24/64 (37.50%), Postives = 37/64 (57.81%), Query Frame = 1 

Query: 19 NRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGTAFVVYEDIYDAKTAVDHL 78
          +R +YV NLP +I   E+ D+F KYG + QI +       G AFV ++D  DA+ A+   
Sbjct: 6  SRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGR 65

Query: 79 SGFN 83
           G++
Sbjct: 66 DGYD 69

[Close]
BLAST of Cp4.1LG05g04730 vs. NCBI nr
Match: gi|659097475|ref|XP_008449647.1| (PREDICTED: splicing factor 3B subunit 6-like protein [Cucumis melo])

HSP 1 Score: 249.2 bits (635), Expect = 3.8e-63
Identity = 123/125 (98.40%), Postives = 125/125 (100.00%), Query Frame = 1 

Query: 1   MATFSLPRKGNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT 60
           MATFSLPRKGNTRLPPEVNRVL+VRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT
Sbjct: 1   MATFSLPRKGNTRLPPEVNRVLFVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT 60

Query: 61  AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDEIARMQEKYGV 120
           AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDE+ARMQEKYGV
Sbjct: 61  AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDELARMQEKYGV 120

Query: 121 STKDK 126
           STKDK
Sbjct: 121 STKDK 125

[Close]
BLAST of Cp4.1LG05g04730 vs. NCBI nr
Match: gi|922357372|ref|XP_003617230.2| (Pre-mRNA branch site p14-like protein [Medicago truncatula])

HSP 1 Score: 240.4 bits (612), Expect = 1.7e-60
Identity = 122/125 (97.60%), Postives = 122/125 (97.60%), Query Frame = 1 

Query: 1   MATFSLPRKGNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT 60
           M T SL RKGNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT
Sbjct: 1   MTTISL-RKGNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT 60

Query: 61  AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDEIARMQEKYGV 120
           AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDEIARMQEKYGV
Sbjct: 61  AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDEIARMQEKYGV 120

Query: 121 STKDK 126
           STKDK
Sbjct: 121 STKDK 124

[Close]
BLAST of Cp4.1LG05g04730 vs. NCBI nr
Match: gi|356501392|ref|XP_003519509.1| (PREDICTED: splicing factor 3B subunit 6-like protein [Glycine max])

HSP 1 Score: 240.0 bits (611), Expect = 2.3e-60
Identity = 122/125 (97.60%), Postives = 122/125 (97.60%), Query Frame = 1 

Query: 1   MATFSLPRKGNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT 60
           MA  SL RKGNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT
Sbjct: 1   MAAISL-RKGNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT 60

Query: 61  AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDEIARMQEKYGV 120
           AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDEIARMQEKYGV
Sbjct: 61  AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDEIARMQEKYGV 120

Query: 121 STKDK 126
           STKDK
Sbjct: 121 STKDK 124

[Close]
BLAST of Cp4.1LG05g04730 vs. NCBI nr
Match: gi|356554173|ref|XP_003545423.1| (PREDICTED: splicing factor 3B subunit 6-like protein [Glycine max])

HSP 1 Score: 239.6 bits (610), Expect = 3.0e-60
Identity = 121/125 (96.80%), Postives = 122/125 (97.60%), Query Frame = 1 

Query: 1   MATFSLPRKGNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT 60
           MA  SL RKGNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT
Sbjct: 1   MAAISL-RKGNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT 60

Query: 61  AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDEIARMQEKYGV 120
           AF+VYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDEIARMQEKYGV
Sbjct: 61  AFIVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDEIARMQEKYGV 120

Query: 121 STKDK 126
           STKDK
Sbjct: 121 STKDK 124

[Close]
BLAST of Cp4.1LG05g04730 vs. NCBI nr
Match: gi|802558799|ref|XP_012065832.1| (PREDICTED: splicing factor 3B subunit 6-like protein [Jatropha curcas])

HSP 1 Score: 238.8 bits (608), Expect = 5.1e-60
Identity = 121/125 (96.80%), Postives = 123/125 (98.40%), Query Frame = 1 

Query: 1   MATFSLPRKGNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT 60
           MAT SL RKGNTRLPPEVNRVLYVRNLPFNI+SEEMYDIFGKYGAIRQIRIGTNKDTRGT
Sbjct: 1   MATISL-RKGNTRLPPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGTNKDTRGT 60

Query: 61  AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDEIARMQEKYGV 120
           AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKE+EIARMQEKYGV
Sbjct: 61  AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEEEIARMQEKYGV 120

Query: 121 STKDK 126
           STKDK
Sbjct: 121 STKDK 124

The following BLAST results are available for this feature:
BLAST of Cp4.1LG05g04730 vs. Swiss-Prot
Match NameE-valueIdentityDescription
SF3B6_ARATH1.5e-5688.80Splicing factor 3B subunit 6-like protein OS=Arabidopsis thaliana GN=At5g12190 P... [more]
SF3B6_MOUSE1.1e-4166.09Splicing factor 3B subunit 6 OS=Mus musculus GN=Sf3b6 PE=1 SV=1[more]
SF3B6_HUMAN1.1e-4166.09Splicing factor 3B subunit 6 OS=Homo sapiens GN=SF3B6 PE=1 SV=1[more]
SF3B6_DROME4.5e-4064.96Splicing factor 3B subunit 6-like protein OS=Drosophila melanogaster GN=CG13298 ... [more]
SF3B6_CAEEL2.1e-3762.96Splicing factor 3B subunit 6-like protein OS=Caenorhabditis elegans GN=C50D2.5 P... [more]
BLAST of Cp4.1LG05g04730 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KI93_CUCSA2.6e-6398.40Uncharacterized protein OS=Cucumis sativus GN=Csa_6G430680 PE=4 SV=1[more]
B7FGI3_MEDTR1.2e-6097.60Pre-mRNA branch site p14-like protein OS=Medicago truncatula GN=MTR_5g089300 PE=... [more]
A0A0L9UUV9_PHAAN1.6e-6097.60Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan07g035900 PE=4 SV=1[more]
A0A0S3RK02_PHAAN1.6e-6097.60Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.03G048500 PE=... [more]
A0A151U1T1_CAJCA1.6e-6097.60Pre-mRNA branch site p14-like protein OS=Cajanus cajan GN=KK1_005861 PE=4 SV=1[more]
BLAST of Cp4.1LG05g04730 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G12190.18.6e-5888.80 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT2G14870.11.5e-2572.86 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT4G02430.23.1e-0737.50 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT5G07290.16.9e-0731.76 MEI2-like 4[more]
AT1G02840.19.0e-0737.50 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
BLAST of Cp4.1LG05g04730 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659097475|ref|XP_008449647.1|3.8e-6398.40PREDICTED: splicing factor 3B subunit 6-like protein [Cucumis melo][more]
gi|922357372|ref|XP_003617230.2|1.7e-6097.60Pre-mRNA branch site p14-like protein [Medicago truncatula][more]
gi|356501392|ref|XP_003519509.1|2.3e-6097.60PREDICTED: splicing factor 3B subunit 6-like protein [Glycine max][more]
gi|356554173|ref|XP_003545423.1|3.0e-6096.80PREDICTED: splicing factor 3B subunit 6-like protein [Glycine max][more]
gi|802558799|ref|XP_012065832.1|5.1e-6096.80PREDICTED: splicing factor 3B subunit 6-like protein [Jatropha curcas][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0000166nucleotide binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait_sf
IPR000504RRM_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0000398 mRNA splicing, via spliceosome
cellular_component GO:0005575 cellular_component
cellular_component GO:0071013 catalytic step 2 spliceosome
cellular_component GO:0071011 precatalytic spliceosome
cellular_component GO:0005689 U12-type spliceosomal complex
cellular_component GO:0005686 U2 snRNP
cellular_component GO:0005684 U2-type spliceosomal complex
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0003723 RNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG05g04730.1Cp4.1LG05g04730.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 22..88
score: 5.2
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 21..91
score: 1.6
IPR000504RNA recognition motif domainPROFILEPS50102RRMcoord: 20..95
score: 16
IPR012677Nucleotide-binding alpha-beta plait domainGENE3DG3DSA:3.30.70.330coord: 19..108
score: 1.2
IPR012677Nucleotide-binding alpha-beta plait domainunknownSSF54928RNA-binding domain, RBDcoord: 10..103
score: 1.88
NoneNo IPR availablePANTHERPTHR12785FAMILY NOT NAMEDcoord: 8..123
score: 6.3

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG05g04730Cucsa.086930Cucumber (Gy14) v1cgycpeB0161
Cp4.1LG05g04730CmaCh20G001170Cucurbita maxima (Rimu)cmacpeB586
Cp4.1LG05g04730CmaCh02G012820Cucurbita maxima (Rimu)cmacpeB646
Cp4.1LG05g04730CmoCh20G001250Cucurbita moschata (Rifu)cmocpeB535
Cp4.1LG05g04730CmoCh02G013240Cucurbita moschata (Rifu)cmocpeB595
Cp4.1LG05g04730Csa6G430680Cucumber (Chinese Long) v2cpecuB742
Cp4.1LG05g04730MELO3C014555Melon (DHL92) v3.5.1cpemeB696
Cp4.1LG05g04730ClCG02G022780Watermelon (Charleston Gray)cpewcgB644
Cp4.1LG05g04730CSPI06G23790Wild cucumber (PI 183967)cpecpiB744
Cp4.1LG05g04730Lsi10G010990Bottle gourd (USVL1VR-Ls)cpelsiB598
Cp4.1LG05g04730MELO3C014555.2Melon (DHL92) v3.6.1cpemedB829
Cp4.1LG05g04730Bhi10G000190Wax gourdcpewgoB0944
Cp4.1LG05g04730CsGy6G023130Cucumber (Gy14) v2cgybcpeB845
Cp4.1LG05g04730Carg02682Silver-seed gourdcarcpeB1283
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG05g04730Cp4.1LG16g08510Cucurbita pepo (Zucchini)cpecpeB310
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG05g04730Cucurbita pepo (Zucchini)cpecpeB369
Cp4.1LG05g04730Cucurbita pepo (Zucchini)cpecpeB493
Cp4.1LG05g04730Cucurbita maxima (Rimu)cmacpeB098
Cp4.1LG05g04730Cucurbita maxima (Rimu)cmacpeB158
Cp4.1LG05g04730Cucurbita moschata (Rifu)cmocpeB074
Cp4.1LG05g04730Cucurbita moschata (Rifu)cmocpeB134
Cp4.1LG05g04730Watermelon (97103) v1cpewmB723
Cp4.1LG05g04730Cucumber (Gy14) v2cgybcpeB137
Cp4.1LG05g04730Silver-seed gourdcarcpeB0741
Cp4.1LG05g04730Cucumber (Chinese Long) v3cpecucB0921
Cp4.1LG05g04730Cucumber (Chinese Long) v3cpecucB0877