Cp4.1LG05g04730.1 (mRNA) Cucurbita pepo (Zucchini)
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCCACATTCAGTCTTCCCCGCAAGGGAAACACGAGGCTGCCGCCGGAGGTCAACAGAGTTTTGTATGTACGAAATTTGCCCTTCAACATTACCAGCGAAGAGATGTACGATATATTCGGCAAGTACGGGGCGATTCGGCAGATCCGGATTGGAACGAACAAGGATACTAGAGGTACCGCCTTTGTTGTTTACGAGGATATCTATGATGCTAAGACGGCGGTGGATCATCTCTCCGGTTTCAACGTTGCGAATCGGTATCTGATCGTGTTGTACTACCAGCAGGCCAAGATGAGTAAAAAGTTCGATCAGAAGAAGAAAGAGGATGAAATTGCTAGGATGCAGGAGAAGTACGGGGTTTCTACGAAAGATAAGTAA ATGGCCACATTCAGTCTTCCCCGCAAGGGAAACACGAGGCTGCCGCCGGAGGTCAACAGAGTTTTGTATGTACGAAATTTGCCCTTCAACATTACCAGCGAAGAGATGTACGATATATTCGGCAAGTACGGGGCGATTCGGCAGATCCGGATTGGAACGAACAAGGATACTAGAGGTACCGCCTTTGTTGTTTACGAGGATATCTATGATGCTAAGACGGCGGTGGATCATCTCTCCGGTTTCAACGTTGCGAATCGGTATCTGATCGTGTTGTACTACCAGCAGGCCAAGATGAGTAAAAAGTTCGATCAGAAGAAGAAAGAGGATGAAATTGCTAGGATGCAGGAGAAGTACGGGGTTTCTACGAAAGATAAGTAA ATGGCCACATTCAGTCTTCCCCGCAAGGGAAACACGAGGCTGCCGCCGGAGGTCAACAGAGTTTTGTATGTACGAAATTTGCCCTTCAACATTACCAGCGAAGAGATGTACGATATATTCGGCAAGTACGGGGCGATTCGGCAGATCCGGATTGGAACGAACAAGGATACTAGAGGTACCGCCTTTGTTGTTTACGAGGATATCTATGATGCTAAGACGGCGGTGGATCATCTCTCCGGTTTCAACGTTGCGAATCGGTATCTGATCGTGTTGTACTACCAGCAGGCCAAGATGAGTAAAAAGTTCGATCAGAAGAAGAAAGAGGATGAAATTGCTAGGATGCAGGAGAAGTACGGGGTTTCTACGAAAGATAAGTAA MATFSLPRKGNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDEIARMQEKYGVSTKDK
BLAST of Cp4.1LG05g04730.1 vs. Swiss-Prot
Match: SF3B6_ARATH (Splicing factor 3B subunit 6-like protein OS=Arabidopsis thaliana GN=At5g12190 PE=2 SV=1) HSP 1 Score: 219.9 bits (559), Expect = 1.5e-56 Identity = 111/125 (88.80%), Postives = 115/125 (92.00%), Query Frame = 1
BLAST of Cp4.1LG05g04730.1 vs. Swiss-Prot
Match: SF3B6_MOUSE (Splicing factor 3B subunit 6 OS=Mus musculus GN=Sf3b6 PE=1 SV=1) HSP 1 Score: 170.6 bits (431), Expect = 1.1e-41 Identity = 76/115 (66.09%), Postives = 96/115 (83.48%), Query Frame = 1
BLAST of Cp4.1LG05g04730.1 vs. Swiss-Prot
Match: SF3B6_HUMAN (Splicing factor 3B subunit 6 OS=Homo sapiens GN=SF3B6 PE=1 SV=1) HSP 1 Score: 170.6 bits (431), Expect = 1.1e-41 Identity = 76/115 (66.09%), Postives = 96/115 (83.48%), Query Frame = 1
BLAST of Cp4.1LG05g04730.1 vs. Swiss-Prot
Match: SF3B6_DROME (Splicing factor 3B subunit 6-like protein OS=Drosophila melanogaster GN=CG13298 PE=1 SV=1) HSP 1 Score: 165.2 bits (417), Expect = 4.5e-40 Identity = 76/117 (64.96%), Postives = 95/117 (81.20%), Query Frame = 1
BLAST of Cp4.1LG05g04730.1 vs. Swiss-Prot
Match: SF3B6_CAEEL (Splicing factor 3B subunit 6-like protein OS=Caenorhabditis elegans GN=C50D2.5 PE=3 SV=2) HSP 1 Score: 156.4 bits (394), Expect = 2.1e-37 Identity = 68/108 (62.96%), Postives = 92/108 (85.19%), Query Frame = 1
BLAST of Cp4.1LG05g04730.1 vs. TrEMBL
Match: A0A0A0KI93_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G430680 PE=4 SV=1) HSP 1 Score: 249.2 bits (635), Expect = 2.6e-63 Identity = 123/125 (98.40%), Postives = 125/125 (100.00%), Query Frame = 1
BLAST of Cp4.1LG05g04730.1 vs. TrEMBL
Match: B7FGI3_MEDTR (Pre-mRNA branch site p14-like protein OS=Medicago truncatula GN=MTR_5g089300 PE=2 SV=1) HSP 1 Score: 240.4 bits (612), Expect = 1.2e-60 Identity = 122/125 (97.60%), Postives = 122/125 (97.60%), Query Frame = 1
BLAST of Cp4.1LG05g04730.1 vs. TrEMBL
Match: A0A0L9UUV9_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan07g035900 PE=4 SV=1) HSP 1 Score: 240.0 bits (611), Expect = 1.6e-60 Identity = 122/125 (97.60%), Postives = 122/125 (97.60%), Query Frame = 1
BLAST of Cp4.1LG05g04730.1 vs. TrEMBL
Match: A0A0S3RK02_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.03G048500 PE=4 SV=1) HSP 1 Score: 240.0 bits (611), Expect = 1.6e-60 Identity = 122/125 (97.60%), Postives = 122/125 (97.60%), Query Frame = 1
BLAST of Cp4.1LG05g04730.1 vs. TrEMBL
Match: A0A151U1T1_CAJCA (Pre-mRNA branch site p14-like protein OS=Cajanus cajan GN=KK1_005861 PE=4 SV=1) HSP 1 Score: 240.0 bits (611), Expect = 1.6e-60 Identity = 122/125 (97.60%), Postives = 122/125 (97.60%), Query Frame = 1
BLAST of Cp4.1LG05g04730.1 vs. TAIR10
Match: AT5G12190.1 (AT5G12190.1 RNA-binding (RRM/RBD/RNP motifs) family protein) HSP 1 Score: 219.9 bits (559), Expect = 8.6e-58 Identity = 111/125 (88.80%), Postives = 115/125 (92.00%), Query Frame = 1
BLAST of Cp4.1LG05g04730.1 vs. TAIR10
Match: AT2G14870.1 (AT2G14870.1 RNA-binding (RRM/RBD/RNP motifs) family protein) HSP 1 Score: 112.8 bits (281), Expect = 1.5e-25 Identity = 51/70 (72.86%), Postives = 59/70 (84.29%), Query Frame = 1
BLAST of Cp4.1LG05g04730.1 vs. TAIR10
Match: AT4G02430.2 (AT4G02430.2 RNA-binding (RRM/RBD/RNP motifs) family protein) HSP 1 Score: 52.0 bits (123), Expect = 3.1e-07 Identity = 27/72 (37.50%), Postives = 39/72 (54.17%), Query Frame = 1
BLAST of Cp4.1LG05g04730.1 vs. TAIR10
Match: AT5G07290.1 (AT5G07290.1 MEI2-like 4) HSP 1 Score: 50.8 bits (120), Expect = 6.9e-07 Identity = 27/85 (31.76%), Postives = 50/85 (58.82%), Query Frame = 1
BLAST of Cp4.1LG05g04730.1 vs. TAIR10
Match: AT1G02840.1 (AT1G02840.1 RNA-binding (RRM/RBD/RNP motifs) family protein) HSP 1 Score: 50.4 bits (119), Expect = 9.0e-07 Identity = 24/64 (37.50%), Postives = 37/64 (57.81%), Query Frame = 1
BLAST of Cp4.1LG05g04730.1 vs. NCBI nr
Match: gi|659097475|ref|XP_008449647.1| (PREDICTED: splicing factor 3B subunit 6-like protein [Cucumis melo]) HSP 1 Score: 249.2 bits (635), Expect = 3.8e-63 Identity = 123/125 (98.40%), Postives = 125/125 (100.00%), Query Frame = 1
BLAST of Cp4.1LG05g04730.1 vs. NCBI nr
Match: gi|922357372|ref|XP_003617230.2| (Pre-mRNA branch site p14-like protein [Medicago truncatula]) HSP 1 Score: 240.4 bits (612), Expect = 1.7e-60 Identity = 122/125 (97.60%), Postives = 122/125 (97.60%), Query Frame = 1
BLAST of Cp4.1LG05g04730.1 vs. NCBI nr
Match: gi|356501392|ref|XP_003519509.1| (PREDICTED: splicing factor 3B subunit 6-like protein [Glycine max]) HSP 1 Score: 240.0 bits (611), Expect = 2.3e-60 Identity = 122/125 (97.60%), Postives = 122/125 (97.60%), Query Frame = 1
BLAST of Cp4.1LG05g04730.1 vs. NCBI nr
Match: gi|356554173|ref|XP_003545423.1| (PREDICTED: splicing factor 3B subunit 6-like protein [Glycine max]) HSP 1 Score: 239.6 bits (610), Expect = 3.0e-60 Identity = 121/125 (96.80%), Postives = 122/125 (97.60%), Query Frame = 1
BLAST of Cp4.1LG05g04730.1 vs. NCBI nr
Match: gi|802558799|ref|XP_012065832.1| (PREDICTED: splicing factor 3B subunit 6-like protein [Jatropha curcas]) HSP 1 Score: 238.8 bits (608), Expect = 5.1e-60 Identity = 121/125 (96.80%), Postives = 123/125 (98.40%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
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