ClCG02G022780 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG02G022780
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Pre-mRNA branch site p14-like protein
Location	CG_Chr02 : 37232728 .. 37235086 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCTCCGAGATTTCCCGCATTTCGAATTTTCTCGCAGTTTCTCATCTCCCAAACAAGCTCCAAAGAAACCTTCCTCCATGGCCACATTCAGCCTTCCCCGCAAGGGAAATACGAGGCTGCCGCCGGAGGTCAACAGAGTCTTGTTTGTAAGAAATTTGCCTTTCAACATTACCAGCGAAGAGATGTACGATATCTTCGGCAAGTACGGGGCTATACGGCAGATTCGGATTGGGACGAACAAGGATACTAGAGGTACCGCCTTTGTTGTTTACGAAGATATTTATGATGCTAAGACGGCGGTGGATCACCTCTCCGGTTTCAACGTTGCCAATCGGTATCTGATCGTGTTGTACTACCAGCAAGCTAAGATGAGCAAAAAGTTCGACCAGAAGAAGAAAGAGGATGAACTCGCTAGGATGCAGGAGAAGTACGGTGTCTCCACGAAAGATAAGTAAAAGGTGTAATGTCAAACTTATTTTTCTTAGGATTTTCTTAAGCAATCCTGGAATTGAGTGGAATTGTTTGTAACTTGACGTTATCTCTTTCTAGGGTTTCATAGCCGTTCTAATGTTCTTAATTGATGGTTGCTATTTTTGCTCTGATTATGGCATCATCTATTTCCGTTAATTATAATTAAATTGTAAGCATTCGTTCTTAACGCCTATCCGGCTTTTTTCATTTCTCTTATATTGTTGGAATATTTGGGTAGTTAACTTCTAAGATATAAATGTTCAAGTTATGACTATGTGAGTGTGTGTAGTGAGCTTGGTATGCTGGCTCTTATCTAATTGAAATAATTGTGCATATTGGATTTCTGCCATCTCGACGAGTTGTGTAGCCACAAACATCTTACTAATCAGGTTTGGTACTTTAAAGCATTAAATATAATTTATCGTTTGGATTATCATCTTTTCTTTCTGAAGCTGATAAAATGGTAGACCAGTGTTAGTGCTCCCCAGTGTGCAAGGAAGAAGTGAATATGAGTTTTGGACAACTGTTACGGTAACGTCTATGACGACCTTACTTGAACAGAATCTGTTCTGTAGGTTGTACAACTGTGTCCTTGAGTTCTAATGATACGATAACATCTTTGTGGAAATCTGTTTGCACTTTGCATGACTAGATCTATTTGGGTTGCTCAGAAGGCATTTGTTGGGAAAGTGAAAGGGAGGAAGTGGTGATAAATTGGAGACCAACTTATGAGTTACACTATACGAATCTGTTATAGCTCTATTTTCCTTCTTTGGTTGTTTCTTTTGTAACTTTCTATGATGAGATTTTTTAATTTTCAATATTCATATGCTTATAAGATGTATTATCTATTGCCTATGCAGGCTGATTTTCTCATACCCTTTCCCCCTATTTGTATTATGCGTGTCCTTTGGCTCTTTTAGGCTTAGACCTTCTATTGTGCTGTGCCATCTGAATACCTCTTGCACAGTGTCGATGTCGAGTATCATAAATTATTCACGACCGGATATTTTATATTGAAGGCATGCTGTAAGAAAGATTTCTTTAATTTCAATGCCCTACATAGAAAGTCACTCTATTTACCTTCTTTGGTCGTTTCTGTAGTAACTTTCTGTTGTGAAGACTTTTTAATTTGCAATATTCATATGCTTAGAAGGTGTATTATTGCCTATGTTGGCTGTTTTTCTTATTCCTTTTTCCCCTATTTGTATTCTGCGTGTTGGCTATCTTAGGCTTAGACCTTCTATTGTGCTGTGCGGTCTGAGTAGCCCTTACACAACATCGAGTATCATAAACGATATTCTATACTGAAGGCATGCTGTGAGAAAGATTTCTTTAATTTTAATGGCCTACTTAGAAAGTCATTCTGAACAGGTACACCATATATATAGAAATAATAGTAAAAGTGAGGATGTGTATCTATCACTTATGTTGACATTTTTGGGATAGTATCTTCGATATTCAAGTTATGCCTCTTCACAGTCAGCGTGTTATTGGAAAACTATAAAAGTGTTGAGGATACTAAGTACGACAGGTGCTTTCGTTTGTGCTGTTGTTAGGAATTCCTGTGGAGCATCTGGAAAGAAAAGGAAAAGTAAATTTGAGGAGGAGGATGCAAAAAGAAGGCATCTTTGTTCGCCCATACCTAAACTTCTCCCTTTCAAGTTTGTTGTATTACAATTTCGTGGACGTTACTTTTTTATTTGATTGGATTGTATGTCTACACATTCATTGTGTCCACAAGTATGAAAGAACATCCTCGAGCTTAGCTCAGTAAGAAAGGTTATCACCATACCTTCCATCCAATGGAATTTCTCCATATAGATCTTTTTGTATATGACGTGTGCTCATTGTGTTCTATTTGCAAGTTCACAAATTATAAGACCCG

mRNA sequence

GTCTCCGAGATTTCCCGCATTTCGAATTTTCTCGCAGTTTCTCATCTCCCAAACAAGCTCCAAAGAAACCTTCCTCCATGGCCACATTCAGCCTTCCCCGCAAGGGAAATACGAGGCTGCCGCCGGAGGTCAACAGAGTCTTGTTTGTAAGAAATTTGCCTTTCAACATTACCAGCGAAGAGATGTACGATATCTTCGGCAAGTACGGGGCTATACGGCAGATTCGGATTGGGACGAACAAGGATACTAGAGGTACCGCCTTTGTTGTTTACGAAGATATTTATGATGCTAAGACGGCGGTGGATCACCTCTCCGGTTTCAACGTTGCCAATCGGTATCTGATCGTGTTGTACTACCAGCAAGCTAAGATGAGCAAAAAGTTCGACCAGAAGAAGAAAGAGGATGAACTCGCTAGGATGCAGGAGAAGTACGGTGTCTCCACGAAAGATAAGTAAGAATTCCTGTGGAGCATCTGGAAAGAAAAGGAAAAGTAAATTTGAGGAGGAGGATGCAAAAAGAAGGCATCTTTGTTCGCCCATACCTAAACTTCTCCCTTTCAAGTTTGTTGTATTACAATTTCGTGGACGTTACTTTTTTATTTGATTGGATTGTATGTCTACACATTCATTGTGTCCACAAGTATGAAAGAACATCCTCGAGCTTAGCTCAGTAAGAAAGGTTATCACCATACCTTCCATCCAATGGAATTTCTCCATATAGATCTTTTTGTATATGACGTGTGCTCATTGTGTTCTATTTGCAAGTTCACAAATTATAAGACCCG

Coding sequence (CDS)

ATGGCCACATTCAGCCTTCCCCGCAAGGGAAATACGAGGCTGCCGCCGGAGGTCAACAGAGTCTTGTTTGTAAGAAATTTGCCTTTCAACATTACCAGCGAAGAGATGTACGATATCTTCGGCAAGTACGGGGCTATACGGCAGATTCGGATTGGGACGAACAAGGATACTAGAGGTACCGCCTTTGTTGTTTACGAAGATATTTATGATGCTAAGACGGCGGTGGATCACCTCTCCGGTTTCAACGTTGCCAATCGGTATCTGATCGTGTTGTACTACCAGCAAGCTAAGATGAGCAAAAAGTTCGACCAGAAGAAGAAAGAGGATGAACTCGCTAGGATGCAGGAGAAGTACGGTGTCTCCACGAAAGATAAGTAA

Protein sequence

MATFSLPRKGNTRLPPEVNRVLFVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDELARMQEKYGVSTKDK

Homology

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BLAST of ClCG02G022780 vs. Swiss-Prot
Match: SF3B6_ARATH (Splicing factor 3B subunit 6-like protein OS=Arabidopsis thaliana GN=At5g12190 PE=2 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 2.6e-56
Identity = 109/125 (87.20%), Postives = 113/125 (90.40%), Query Frame = 1


Query: 1   MATFSLPRKGNTRLPPEVNRVLFVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT 60
           M T SL RK NTRLPPEVNRVL+VRNLPFNITSEEMYDIFGKYGAIRQIRIG +K T+GT
Sbjct: 1   MTTISL-RKSNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGCDKATKGT 60

Query: 61  AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDELARMQEKYGV 120
           AFVVYEDIYDAK AVDHLSGFNVANRYLIVLYYQ AKMSKKFDQKK EDE+ ++QEKYGV
Sbjct: 61  AFVVYEDIYDAKNAVDHLSGFNVANRYLIVLYYQHAKMSKKFDQKKSEDEITKLQEKYGV 120

Query: 121 STKDK 126
           STKDK
Sbjct: 121 STKDK 124

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BLAST of ClCG02G022780 vs. Swiss-Prot
Match: SF3B6_HUMAN (Splicing factor 3B subunit 6 OS=Homo sapiens GN=SF3B6 PE=1 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 1.1e-41
Identity = 76/115 (66.09%), Postives = 94/115 (81.74%), Query Frame = 1


Query: 8   RKGNTRLPPEVNRVLFVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGTAFVVYED 67
           ++ N RLPPEVNR+L++RNLP+ IT+EEMYDIFGKYG IRQIR+G   +TRGTA+VVYED
Sbjct: 7   KRANIRLPPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYED 66

Query: 68  IYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDELARMQEKYGVST 123
           I+DAK A DHLSGFNV NRYL+VLYY   +  +K D KKKE++L  ++EKYG++T
Sbjct: 67  IFDAKNACDHLSGFNVCNRYLVVLYYNANRAFQKMDTKKKEEQLKLLKEKYGINT 121

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BLAST of ClCG02G022780 vs. Swiss-Prot
Match: SF3B6_MOUSE (Splicing factor 3B subunit 6 OS=Mus musculus GN=Sf3b6 PE=1 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 1.1e-41
Identity = 76/115 (66.09%), Postives = 94/115 (81.74%), Query Frame = 1


Query: 8   RKGNTRLPPEVNRVLFVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGTAFVVYED 67
           ++ N RLPPEVNR+L++RNLP+ IT+EEMYDIFGKYG IRQIR+G   +TRGTA+VVYED
Sbjct: 7   KRANIRLPPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYED 66

Query: 68  IYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDELARMQEKYGVST 123
           I+DAK A DHLSGFNV NRYL+VLYY   +  +K D KKKE++L  ++EKYG++T
Sbjct: 67  IFDAKNACDHLSGFNVCNRYLVVLYYNANRAFQKMDTKKKEEQLKLLKEKYGINT 121

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BLAST of ClCG02G022780 vs. Swiss-Prot
Match: SF3B6_DROME (Splicing factor 3B subunit 6-like protein OS=Drosophila melanogaster GN=CG13298 PE=1 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 2.6e-40
Identity = 76/117 (64.96%), Postives = 93/117 (79.49%), Query Frame = 1


Query: 8   RKGNTRLPPEVNRVLFVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGTAFVVYED 67
           ++ + RLPPEVNR+L+VRNLP+ ITS+EMYDIFGK+GAIRQIR+G   +TRGTAFVVYED
Sbjct: 3   KRNHIRLPPEVNRLLYVRNLPYKITSDEMYDIFGKFGAIRQIRVGNTPETRGTAFVVYED 62

Query: 68  IYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDELARMQEKYGVSTKD 125
           I+DAK A DHLSGFNV NRYL+VLYYQ  K  K+ D  KK++EL  ++ KY + T +
Sbjct: 63  IFDAKNACDHLSGFNVCNRYLVVLYYQSNKAFKRVDMDKKQEELNNIKAKYNLKTPE 119

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BLAST of ClCG02G022780 vs. Swiss-Prot
Match: SF3B6_CAEEL (Splicing factor 3B subunit 6-like protein OS=Caenorhabditis elegans GN=C50D2.5 PE=3 SV=2)

HSP 1 Score: 156.8 bits (395), Expect = 1.6e-37
Identity = 68/108 (62.96%), Postives = 90/108 (83.33%), Query Frame = 1


Query: 13  RLPPEVNRVLFVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGTAFVVYEDIYDAK 72
           +LPPEVNR+L+++NLP+ IT+EEMY+IFGK+GA+RQIR+G   +TRGTAFVVYEDI+DAK
Sbjct: 12  KLPPEVNRILYIKNLPYKITTEEMYEIFGKFGAVRQIRVGNTAETRGTAFVVYEDIFDAK 71

Query: 73  TAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDELARMQEKYGV 121
           TA +HLSG+NV+NRYL+VLYYQ  K  K+ D +K   +L  ++E+YG+
Sbjct: 72  TACEHLSGYNVSNRYLVVLYYQATKAWKRMDTEKARTKLEDIKERYGI 119

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BLAST of ClCG02G022780 vs. TrEMBL
Match: A0A0A0KI93_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G430680 PE=4 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 2.4e-64
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 1


Query: 1   MATFSLPRKGNTRLPPEVNRVLFVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT 60
           MATFSLPRKGNTRLPPEVNRVLFVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT
Sbjct: 1   MATFSLPRKGNTRLPPEVNRVLFVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT 60

Query: 61  AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDELARMQEKYGV 120
           AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDELARMQEKYGV
Sbjct: 61  AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDELARMQEKYGV 120

Query: 121 STKDK 126
           STKDK
Sbjct: 121 STKDK 125

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BLAST of ClCG02G022780 vs. TrEMBL
Match: B7FGI3_MEDTR (Pre-mRNA branch site p14-like protein OS=Medicago truncatula GN=MTR_5g089300 PE=2 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 2.1e-60
Identity = 120/125 (96.00%), Postives = 122/125 (97.60%), Query Frame = 1


Query: 1   MATFSLPRKGNTRLPPEVNRVLFVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT 60
           M T SL RKGNTRLPPEVNRVL+VRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT
Sbjct: 1   MTTISL-RKGNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT 60

Query: 61  AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDELARMQEKYGV 120
           AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDE+ARMQEKYGV
Sbjct: 61  AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDEIARMQEKYGV 120

Query: 121 STKDK 126
           STKDK
Sbjct: 121 STKDK 124

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BLAST of ClCG02G022780 vs. TrEMBL
Match: V7B6G4_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_008G202000g PE=4 SV=1)

HSP 1 Score: 239.2 bits (609), Expect = 2.7e-60
Identity = 120/125 (96.00%), Postives = 122/125 (97.60%), Query Frame = 1


Query: 1   MATFSLPRKGNTRLPPEVNRVLFVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT 60
           MA  SL RKGNTRLPPEVNRVL+VRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT
Sbjct: 1   MAAISL-RKGNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT 60

Query: 61  AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDELARMQEKYGV 120
           AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDE+ARMQEKYGV
Sbjct: 61  AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDEIARMQEKYGV 120

Query: 121 STKDK 126
           STKDK
Sbjct: 121 STKDK 124

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BLAST of ClCG02G022780 vs. TrEMBL
Match: A0A0L9UUV9_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan07g035900 PE=4 SV=1)

HSP 1 Score: 239.2 bits (609), Expect = 2.7e-60
Identity = 120/125 (96.00%), Postives = 122/125 (97.60%), Query Frame = 1


Query: 1   MATFSLPRKGNTRLPPEVNRVLFVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT 60
           MA  SL RKGNTRLPPEVNRVL+VRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT
Sbjct: 1   MAAISL-RKGNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT 60

Query: 61  AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDELARMQEKYGV 120
           AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDE+ARMQEKYGV
Sbjct: 61  AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDEIARMQEKYGV 120

Query: 121 STKDK 126
           STKDK
Sbjct: 121 STKDK 124

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BLAST of ClCG02G022780 vs. TrEMBL
Match: A0A0B2S153_GLYSO (Pre-mRNA branch site p14-like protein OS=Glycine soja GN=glysoja_004058 PE=4 SV=1)

HSP 1 Score: 239.2 bits (609), Expect = 2.7e-60
Identity = 120/125 (96.00%), Postives = 122/125 (97.60%), Query Frame = 1


Query: 1   MATFSLPRKGNTRLPPEVNRVLFVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT 60
           MA  SL RKGNTRLPPEVNRVL+VRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT
Sbjct: 1   MAAISL-RKGNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT 60

Query: 61  AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDELARMQEKYGV 120
           AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDE+ARMQEKYGV
Sbjct: 61  AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDEIARMQEKYGV 120

Query: 121 STKDK 126
           STKDK
Sbjct: 121 STKDK 124

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BLAST of ClCG02G022780 vs. TAIR10
Match: AT5G12190.1 (AT5G12190.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 219.2 bits (557), Expect = 1.5e-57
Identity = 109/125 (87.20%), Postives = 113/125 (90.40%), Query Frame = 1


Query: 1   MATFSLPRKGNTRLPPEVNRVLFVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT 60
           M T SL RK NTRLPPEVNRVL+VRNLPFNITSEEMYDIFGKYGAIRQIRIG +K T+GT
Sbjct: 1   MTTISL-RKSNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGCDKATKGT 60

Query: 61  AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDELARMQEKYGV 120
           AFVVYEDIYDAK AVDHLSGFNVANRYLIVLYYQ AKMSKKFDQKK EDE+ ++QEKYGV
Sbjct: 61  AFVVYEDIYDAKNAVDHLSGFNVANRYLIVLYYQHAKMSKKFDQKKSEDEITKLQEKYGV 120

Query: 121 STKDK 126
           STKDK
Sbjct: 121 STKDK 124

[Close]

BLAST of ClCG02G022780 vs. TAIR10
Match: AT2G14870.1 (AT2G14870.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 109.4 bits (272), Expect = 1.6e-24
Identity = 50/70 (71.43%), Postives = 57/70 (81.43%), Query Frame = 1


Query: 9  KGNTRLPPEVNRVLFVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGTAFVVYEDI 68
          K N RLPPEV R+L++ NLPF+ITSE+ YD+FG+Y  IRQ+RIG  K T+GTAFVVYEDI
Sbjct: 9  KQNPRLPPEVTRLLYICNLPFSITSEDTYDLFGRYSTIRQVRIGCEKGTKGTAFVVYEDI 68

Query: 69 YDAKTAVDHL 79
          YDAK AVDHL
Sbjct: 69 YDAKKAVDHL 78

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BLAST of ClCG02G022780 vs. TAIR10
Match: AT2G30260.1 (AT2G30260.1 U2 small nuclear ribonucleoprotein B)

HSP 1 Score: 49.3 bits (116), Expect = 2.0e-06
Identity = 30/89 (33.71%), Postives = 45/89 (50.56%), Query Frame = 1


Query: 5   SLPRKGNTRLPPEVNRVLFVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGTAFVV 64
           S    G   +PP  N +LF++NLP   TS  +  +F +Y   ++IR+   K   G AFV 
Sbjct: 145 SFQPSGQETMPP--NNILFIQNLPHETTSMMLQLLFEQYPGFKEIRMIDAKP--GIAFVE 204

Query: 65  YEDIYDAKTAVDHLSGFNVANRYLIVLYY 94
           YED   A  A+  L GF +  +  +V+ +
Sbjct: 205 YEDDVQASIAMQPLQGFKITPQNPMVISF 229

[Close]

BLAST of ClCG02G022780 vs. TAIR10
Match: AT2G21440.1 (AT2G21440.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 49.3 bits (116), Expect = 2.0e-06
Identity = 32/105 (30.48%), Postives = 56/105 (53.33%), Query Frame = 1


Query: 17  EVNRVLFVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTR---GTAFVVYEDIYDAKT 76
           +  R LF+RNLPF++T EE+   F  +G +  + +  +K T+   GTAFV ++    A  
Sbjct: 558 DFERTLFIRNLPFDVTKEEVKQRFTVFGEVESLSLVLHKVTKRPEGTAFVKFK---TADA 617

Query: 77  AVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKED-ELARMQEK 118
           +V  +S  + A+   ++L  +Q  + +   +K  +D EL + +EK
Sbjct: 618 SVAAISAADTASGVGVLLKGRQLNVMRAVGKKAAKDIELKKTEEK 659

[Close]

BLAST of ClCG02G022780 vs. TAIR10
Match: AT5G64200.1 (AT5G64200.1 ortholog of human splicing factor SC35)

HSP 1 Score: 48.5 bits (114), Expect = 3.4e-06
Identity = 29/95 (30.53%), Postives = 50/95 (52.63%), Query Frame = 1


Query: 15  PPEVNRV--LFVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNK---DTRGTAFVVYEDIY 74
           PP+++    L V N+ F  T++++Y +F KYG +  + I  ++   D+RG AFV Y+   
Sbjct: 9   PPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKD 68

Query: 75  DAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQ 105
           +A  AV+ L G  V  R + V + +    ++K  +
Sbjct: 69  EAHKAVERLDGRVVDGREITVQFAKYGPNAEKISK 103

[Close]

BLAST of ClCG02G022780 vs. NCBI nr
Match: gi|659097475|ref|XP_008449647.1| (PREDICTED: splicing factor 3B subunit 6-like protein [Cucumis melo])

HSP 1 Score: 252.7 bits (644), Expect = 3.4e-64
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 1


Query: 1   MATFSLPRKGNTRLPPEVNRVLFVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT 60
           MATFSLPRKGNTRLPPEVNRVLFVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT
Sbjct: 1   MATFSLPRKGNTRLPPEVNRVLFVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT 60

Query: 61  AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDELARMQEKYGV 120
           AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDELARMQEKYGV
Sbjct: 61  AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDELARMQEKYGV 120

Query: 121 STKDK 126
           STKDK
Sbjct: 121 STKDK 125

[Close]

BLAST of ClCG02G022780 vs. NCBI nr
Match: gi|922357372|ref|XP_003617230.2| (Pre-mRNA branch site p14-like protein [Medicago truncatula])

HSP 1 Score: 239.6 bits (610), Expect = 3.0e-60
Identity = 120/125 (96.00%), Postives = 122/125 (97.60%), Query Frame = 1


Query: 1   MATFSLPRKGNTRLPPEVNRVLFVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT 60
           M T SL RKGNTRLPPEVNRVL+VRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT
Sbjct: 1   MTTISL-RKGNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT 60

Query: 61  AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDELARMQEKYGV 120
           AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDE+ARMQEKYGV
Sbjct: 61  AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDEIARMQEKYGV 120

Query: 121 STKDK 126
           STKDK
Sbjct: 121 STKDK 124

[Close]

BLAST of ClCG02G022780 vs. NCBI nr
Match: gi|356501392|ref|XP_003519509.1| (PREDICTED: splicing factor 3B subunit 6-like protein [Glycine max])

HSP 1 Score: 239.2 bits (609), Expect = 3.9e-60
Identity = 120/125 (96.00%), Postives = 122/125 (97.60%), Query Frame = 1


Query: 1   MATFSLPRKGNTRLPPEVNRVLFVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT 60
           MA  SL RKGNTRLPPEVNRVL+VRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT
Sbjct: 1   MAAISL-RKGNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT 60

Query: 61  AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDELARMQEKYGV 120
           AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDE+ARMQEKYGV
Sbjct: 61  AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDEIARMQEKYGV 120

Query: 121 STKDK 126
           STKDK
Sbjct: 121 STKDK 124

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BLAST of ClCG02G022780 vs. NCBI nr
Match: gi|356554173|ref|XP_003545423.1| (PREDICTED: splicing factor 3B subunit 6-like protein [Glycine max])

HSP 1 Score: 238.8 bits (608), Expect = 5.1e-60
Identity = 119/125 (95.20%), Postives = 122/125 (97.60%), Query Frame = 1


Query: 1   MATFSLPRKGNTRLPPEVNRVLFVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT 60
           MA  SL RKGNTRLPPEVNRVL+VRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT
Sbjct: 1   MAAISL-RKGNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT 60

Query: 61  AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDELARMQEKYGV 120
           AF+VYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDE+ARMQEKYGV
Sbjct: 61  AFIVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDEIARMQEKYGV 120

Query: 121 STKDK 126
           STKDK
Sbjct: 121 STKDK 124

[Close]

BLAST of ClCG02G022780 vs. NCBI nr
Match: gi|802558799|ref|XP_012065832.1| (PREDICTED: splicing factor 3B subunit 6-like protein [Jatropha curcas])

HSP 1 Score: 238.0 bits (606), Expect = 8.7e-60
Identity = 119/125 (95.20%), Postives = 123/125 (98.40%), Query Frame = 1


Query: 1   MATFSLPRKGNTRLPPEVNRVLFVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT 60
           MAT SL RKGNTRLPPEVNRVL+VRNLPFNI+SEEMYDIFGKYGAIRQIRIGTNKDTRGT
Sbjct: 1   MATISL-RKGNTRLPPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGTNKDTRGT 60

Query: 61  AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDELARMQEKYGV 120
           AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKE+E+ARMQEKYGV
Sbjct: 61  AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEEEIARMQEKYGV 120

Query: 121 STKDK 126
           STKDK
Sbjct: 121 STKDK 124

The following BLAST results are available for this feature:

BLAST of ClCG02G022780 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SF3B6_ARATH	2.6e-56	87.20	Splicing factor 3B subunit 6-like protein OS=Arabidopsis thaliana GN=At5g12190 P...	[more]
SF3B6_HUMAN	1.1e-41	66.09	Splicing factor 3B subunit 6 OS=Homo sapiens GN=SF3B6 PE=1 SV=1	[more]
SF3B6_MOUSE	1.1e-41	66.09	Splicing factor 3B subunit 6 OS=Mus musculus GN=Sf3b6 PE=1 SV=1	[more]
SF3B6_DROME	2.6e-40	64.96	Splicing factor 3B subunit 6-like protein OS=Drosophila melanogaster GN=CG13298 ...	[more]
SF3B6_CAEEL	1.6e-37	62.96	Splicing factor 3B subunit 6-like protein OS=Caenorhabditis elegans GN=C50D2.5 P...	[more]

BLAST of ClCG02G022780 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KI93_CUCSA	2.4e-64	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G430680 PE=4 SV=1	[more]
B7FGI3_MEDTR	2.1e-60	96.00	Pre-mRNA branch site p14-like protein OS=Medicago truncatula GN=MTR_5g089300 PE=...	[more]
V7B6G4_PHAVU	2.7e-60	96.00	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_008G202000g PE=4 SV=1	[more]
A0A0L9UUV9_PHAAN	2.7e-60	96.00	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan07g035900 PE=4 SV=1	[more]
A0A0B2S153_GLYSO	2.7e-60	96.00	Pre-mRNA branch site p14-like protein OS=Glycine soja GN=glysoja_004058 PE=4 SV=...	[more]

BLAST of ClCG02G022780 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G12190.1	1.5e-57	87.20	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G14870.1	1.6e-24	71.43	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G30260.1	2.0e-06	33.71	U2 small nuclear ribonucleoprotein B	[more]
AT2G21440.1	2.0e-06	30.48	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G64200.1	3.4e-06	30.53	ortholog of human splicing factor SC35	[more]

BLAST of ClCG02G022780 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659097475\|ref\|XP_008449647.1\|	3.4e-64	100.00	PREDICTED: splicing factor 3B subunit 6-like protein [Cucumis melo]	[more]
gi\|922357372\|ref\|XP_003617230.2\|	3.0e-60	96.00	Pre-mRNA branch site p14-like protein [Medicago truncatula]	[more]
gi\|356501392\|ref\|XP_003519509.1\|	3.9e-60	96.00	PREDICTED: splicing factor 3B subunit 6-like protein [Glycine max]	[more]
gi\|356554173\|ref\|XP_003545423.1\|	5.1e-60	95.20	PREDICTED: splicing factor 3B subunit 6-like protein [Glycine max]	[more]
gi\|802558799\|ref\|XP_012065832.1\|	8.7e-60	95.20	PREDICTED: splicing factor 3B subunit 6-like protein [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0000166	nucleotide binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0071013	catalytic step 2 spliceosome
cellular_component	GO:0071011	precatalytic spliceosome
cellular_component	GO:0005689	U12-type spliceosomal complex
cellular_component	GO:0005686	U2 snRNP
cellular_component	GO:0005684	U2-type spliceosomal complex
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG02G022780.1	ClCG02G022780.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 22..88 score: 4.5
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 21..91 score: 1.4
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 20..95 score: 16
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 19..108 score: 1.5
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 10..103 score: 1.61
None	No IPR available	PANTHER	PTHR12785	FAMILY NOT NAMED	coord: 8..123 score: 4.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG02G022780	Csa6G430680	Cucumber (Chinese Long) v2	cuwcgB438
ClCG02G022780	MELO3C014555	Melon (DHL92) v3.5.1	mewcgB376
ClCG02G022780	Bhi10G000190	Wax gourd	wcgwgoB283
ClCG02G022780	CSPI06G23790	Wild cucumber (PI 183967)	cpiwcgB459
ClCG02G022780	Cucsa.086930	Cucumber (Gy14) v1	cgywcgB096
ClCG02G022780	CmaCh20G001170	Cucurbita maxima (Rimu)	cmawcgB489
ClCG02G022780	CmaCh02G012820	Cucurbita maxima (Rimu)	cmawcgB541
ClCG02G022780	CmoCh20G001250	Cucurbita moschata (Rifu)	cmowcgB490
ClCG02G022780	CmoCh02G013240	Cucurbita moschata (Rifu)	cmowcgB538
ClCG02G022780	Lsi10G010990	Bottle gourd (USVL1VR-Ls)	lsiwcgB054
ClCG02G022780	Cp4.1LG16g08510	Cucurbita pepo (Zucchini)	cpewcgB255
ClCG02G022780	Cp4.1LG05g04730	Cucurbita pepo (Zucchini)	cpewcgB644
ClCG02G022780	CsGy6G023130	Cucumber (Gy14) v2	cgybwcgB403
ClCG02G022780	MELO3C014555.2	Melon (DHL92) v3.6.1	medwcgB370
ClCG02G022780	Carg02682	Silver-seed gourd	carwcgB0900

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG02G022780	Silver-seed gourd	carwcgB0503
ClCG02G022780	Cucumber (Chinese Long) v3	cucwcgB459
ClCG02G022780	Watermelon (97103) v2	wcgwmbB138
ClCG02G022780	Watermelon (97103) v1	wcgwmB197