Cp4.1LG16g08510 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG16g08510
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Pre-mRNA branch site p14-like protein
Location	Cp4.1LG16 : 8132030 .. 8132302 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATGATATCTTCGGCAAGTACGGGGCGATCCGGCAGATTCGGATTGGGACGAACAAGGATACGAGAGGTACCGCCTTTGTTGTTTACGAAGATATCTATGATGCTAAGACGGCGGTGGATCACCTCTCCGGTTTCAACGTTGCGAATCGGTATCTGATCGTGTTGTACTACCAGCAGGCCAAGATGAGCAAAAAGTTCGACCAGAAGAAGAAAGAGGATGAAATCGCCAGGATGCAAGAGAAGTACGGTGTTTCCACGAAAGATAAGTAA

mRNA sequence

ATGTATGATATCTTCGGCAAGTACGGGGCGATCCGGCAGATTCGGATTGGGACGAACAAGGATACGAGAGGTACCGCCTTTGTTGTTTACGAAGATATCTATGATGCTAAGACGGCGGTGGATCACCTCTCCGGTTTCAACGTTGCGAATCGGTATCTGATCGTGTTGTACTACCAGCAGGCCAAGATGAGCAAAAAGTTCGACCAGAAGAAGAAAGAGGATGAAATCGCCAGGATGCAAGAGAAGTACGGTGTTTCCACGAAAGATAAGTAA

Coding sequence (CDS)

ATGTATGATATCTTCGGCAAGTACGGGGCGATCCGGCAGATTCGGATTGGGACGAACAAGGATACGAGAGGTACCGCCTTTGTTGTTTACGAAGATATCTATGATGCTAAGACGGCGGTGGATCACCTCTCCGGTTTCAACGTTGCGAATCGGTATCTGATCGTGTTGTACTACCAGCAGGCCAAGATGAGCAAAAAGTTCGACCAGAAGAAGAAAGAGGATGAAATCGCCAGGATGCAAGAGAAGTACGGTGTTTCCACGAAAGATAAGTAA

Protein sequence

MYDIFGKYGAIRQIRIGTNKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDEIARMQEKYGVSTKDK

Homology

[Close]

BLAST of Cp4.1LG16g08510 vs. Swiss-Prot
Match: SF3B6_ARATH (Splicing factor 3B subunit 6-like protein OS=Arabidopsis thaliana GN=At5g12190 PE=2 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 2.1e-39
Identity = 80/90 (88.89%), Postives = 84/90 (93.33%), Query Frame = 1


Query: 1   MYDIFGKYGAIRQIRIGTNKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQ 60
           MYDIFGKYGAIRQIRIG +K T+GTAFVVYEDIYDAK AVDHLSGFNVANRYLIVLYYQ 
Sbjct: 35  MYDIFGKYGAIRQIRIGCDKATKGTAFVVYEDIYDAKNAVDHLSGFNVANRYLIVLYYQH 94

Query: 61  AKMSKKFDQKKKEDEIARMQEKYGVSTKDK 91
           AKMSKKFDQKK EDEI ++QEKYGVSTKDK
Sbjct: 95  AKMSKKFDQKKSEDEITKLQEKYGVSTKDK 124

[Close]

BLAST of Cp4.1LG16g08510 vs. Swiss-Prot
Match: SF3B6_MOUSE (Splicing factor 3B subunit 6 OS=Mus musculus GN=Sf3b6 PE=1 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 2.2e-28
Identity = 57/87 (65.52%), Postives = 71/87 (81.61%), Query Frame = 1


Query: 1   MYDIFGKYGAIRQIRIGTNKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQ 60
           MYDIFGKYG IRQIR+G   +TRGTA+VVYEDI+DAK A DHLSGFNV NRYL+VLYY  
Sbjct: 35  MYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNACDHLSGFNVCNRYLVVLYYNA 94

Query: 61  AKMSKKFDQKKKEDEIARMQEKYGVST 88
            +  +K D KKKE+++  ++EKYG++T
Sbjct: 95  NRAFQKMDTKKKEEQLKLLKEKYGINT 121

[Close]

BLAST of Cp4.1LG16g08510 vs. Swiss-Prot
Match: SF3B6_HUMAN (Splicing factor 3B subunit 6 OS=Homo sapiens GN=SF3B6 PE=1 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 2.2e-28
Identity = 57/87 (65.52%), Postives = 71/87 (81.61%), Query Frame = 1


Query: 1   MYDIFGKYGAIRQIRIGTNKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQ 60
           MYDIFGKYG IRQIR+G   +TRGTA+VVYEDI+DAK A DHLSGFNV NRYL+VLYY  
Sbjct: 35  MYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNACDHLSGFNVCNRYLVVLYYNA 94

Query: 61  AKMSKKFDQKKKEDEIARMQEKYGVST 88
            +  +K D KKKE+++  ++EKYG++T
Sbjct: 95  NRAFQKMDTKKKEEQLKLLKEKYGINT 121

[Close]

BLAST of Cp4.1LG16g08510 vs. Swiss-Prot
Match: SF3B6_DROME (Splicing factor 3B subunit 6-like protein OS=Drosophila melanogaster GN=CG13298 PE=1 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 1.8e-27
Identity = 57/89 (64.04%), Postives = 70/89 (78.65%), Query Frame = 1


Query: 1   MYDIFGKYGAIRQIRIGTNKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQ 60
           MYDIFGK+GAIRQIR+G   +TRGTAFVVYEDI+DAK A DHLSGFNV NRYL+VLYYQ 
Sbjct: 31  MYDIFGKFGAIRQIRVGNTPETRGTAFVVYEDIFDAKNACDHLSGFNVCNRYLVVLYYQS 90

Query: 61  AKMSKKFDQKKKEDEIARMQEKYGVSTKD 90
            K  K+ D  KK++E+  ++ KY + T +
Sbjct: 91  NKAFKRVDMDKKQEELNNIKAKYNLKTPE 119

[Close]

BLAST of Cp4.1LG16g08510 vs. Swiss-Prot
Match: SF3B6_CAEEL (Splicing factor 3B subunit 6-like protein OS=Caenorhabditis elegans GN=C50D2.5 PE=3 SV=2)

HSP 1 Score: 117.9 bits (294), Expect = 5.9e-26
Identity = 52/85 (61.18%), Postives = 70/85 (82.35%), Query Frame = 1


Query: 1   MYDIFGKYGAIRQIRIGTNKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQ 60
           MY+IFGK+GA+RQIR+G   +TRGTAFVVYEDI+DAKTA +HLSG+NV+NRYL+VLYYQ 
Sbjct: 35  MYEIFGKFGAVRQIRVGNTAETRGTAFVVYEDIFDAKTACEHLSGYNVSNRYLVVLYYQA 94

Query: 61  AKMSKKFDQKKKEDEIARMQEKYGV 86
            K  K+ D +K   ++  ++E+YG+
Sbjct: 95  TKAWKRMDTEKARTKLEDIKERYGI 119

[Close]

BLAST of Cp4.1LG16g08510 vs. TrEMBL
Match: A0A0B2S153_GLYSO (Pre-mRNA branch site p14-like protein OS=Glycine soja GN=glysoja_004058 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 8.2e-43
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 1


Query: 1   MYDIFGKYGAIRQIRIGTNKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQ 60
           MYDIFGKYGAIRQIRIGTNKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQ
Sbjct: 35  MYDIFGKYGAIRQIRIGTNKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQ 94

Query: 61  AKMSKKFDQKKKEDEIARMQEKYGVSTKDK 91
           AKMSKKFDQKKKEDEIARMQEKYGVSTKDK
Sbjct: 95  AKMSKKFDQKKKEDEIARMQEKYGVSTKDK 124

[Close]

BLAST of Cp4.1LG16g08510 vs. TrEMBL
Match: A0A0L9UUV9_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan07g035900 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 8.2e-43
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 1


Query: 1   MYDIFGKYGAIRQIRIGTNKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQ 60
           MYDIFGKYGAIRQIRIGTNKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQ
Sbjct: 35  MYDIFGKYGAIRQIRIGTNKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQ 94

Query: 61  AKMSKKFDQKKKEDEIARMQEKYGVSTKDK 91
           AKMSKKFDQKKKEDEIARMQEKYGVSTKDK
Sbjct: 95  AKMSKKFDQKKKEDEIARMQEKYGVSTKDK 124

[Close]

BLAST of Cp4.1LG16g08510 vs. TrEMBL
Match: I1JIW3_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_02G278800 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 8.2e-43
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 1


Query: 1   MYDIFGKYGAIRQIRIGTNKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQ 60
           MYDIFGKYGAIRQIRIGTNKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQ
Sbjct: 35  MYDIFGKYGAIRQIRIGTNKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQ 94

Query: 61  AKMSKKFDQKKKEDEIARMQEKYGVSTKDK 91
           AKMSKKFDQKKKEDEIARMQEKYGVSTKDK
Sbjct: 95  AKMSKKFDQKKKEDEIARMQEKYGVSTKDK 124

[Close]

BLAST of Cp4.1LG16g08510 vs. TrEMBL
Match: B7FGI3_MEDTR (Pre-mRNA branch site p14-like protein OS=Medicago truncatula GN=MTR_5g089300 PE=2 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 8.2e-43
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 1


Query: 1   MYDIFGKYGAIRQIRIGTNKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQ 60
           MYDIFGKYGAIRQIRIGTNKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQ
Sbjct: 35  MYDIFGKYGAIRQIRIGTNKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQ 94

Query: 61  AKMSKKFDQKKKEDEIARMQEKYGVSTKDK 91
           AKMSKKFDQKKKEDEIARMQEKYGVSTKDK
Sbjct: 95  AKMSKKFDQKKKEDEIARMQEKYGVSTKDK 124

[Close]

BLAST of Cp4.1LG16g08510 vs. TrEMBL
Match: V7B6G4_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_008G202000g PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 8.2e-43
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 1


Query: 1   MYDIFGKYGAIRQIRIGTNKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQ 60
           MYDIFGKYGAIRQIRIGTNKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQ
Sbjct: 35  MYDIFGKYGAIRQIRIGTNKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQ 94

Query: 61  AKMSKKFDQKKKEDEIARMQEKYGVSTKDK 91
           AKMSKKFDQKKKEDEIARMQEKYGVSTKDK
Sbjct: 95  AKMSKKFDQKKKEDEIARMQEKYGVSTKDK 124

[Close]

BLAST of Cp4.1LG16g08510 vs. TAIR10
Match: AT5G12190.1 (AT5G12190.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 162.5 bits (410), Expect = 1.2e-40
Identity = 80/90 (88.89%), Postives = 84/90 (93.33%), Query Frame = 1


Query: 1   MYDIFGKYGAIRQIRIGTNKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQ 60
           MYDIFGKYGAIRQIRIG +K T+GTAFVVYEDIYDAK AVDHLSGFNVANRYLIVLYYQ 
Sbjct: 35  MYDIFGKYGAIRQIRIGCDKATKGTAFVVYEDIYDAKNAVDHLSGFNVANRYLIVLYYQH 94

Query: 61  AKMSKKFDQKKKEDEIARMQEKYGVSTKDK 91
           AKMSKKFDQKK EDEI ++QEKYGVSTKDK
Sbjct: 95  AKMSKKFDQKKSEDEITKLQEKYGVSTKDK 124

[Close]

BLAST of Cp4.1LG16g08510 vs. TAIR10
Match: AT2G14870.1 (AT2G14870.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 73.6 bits (179), Expect = 7.2e-14
Identity = 32/42 (76.19%), Postives = 36/42 (85.71%), Query Frame = 1


Query: 2  YDIFGKYGAIRQIRIGTNKDTRGTAFVVYEDIYDAKTAVDHL 44
          YD+FG+Y  IRQ+RIG  K T+GTAFVVYEDIYDAK AVDHL
Sbjct: 37 YDLFGRYSTIRQVRIGCEKGTKGTAFVVYEDIYDAKKAVDHL 78

[Close]

BLAST of Cp4.1LG16g08510 vs. NCBI nr
Match: gi|922357372|ref|XP_003617230.2| (Pre-mRNA branch site p14-like protein [Medicago truncatula])

HSP 1 Score: 180.6 bits (457), Expect = 1.2e-42
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 1


Query: 1   MYDIFGKYGAIRQIRIGTNKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQ 60
           MYDIFGKYGAIRQIRIGTNKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQ
Sbjct: 35  MYDIFGKYGAIRQIRIGTNKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQ 94

Query: 61  AKMSKKFDQKKKEDEIARMQEKYGVSTKDK 91
           AKMSKKFDQKKKEDEIARMQEKYGVSTKDK
Sbjct: 95  AKMSKKFDQKKKEDEIARMQEKYGVSTKDK 124

[Close]

BLAST of Cp4.1LG16g08510 vs. NCBI nr
Match: gi|356501392|ref|XP_003519509.1| (PREDICTED: splicing factor 3B subunit 6-like protein [Glycine max])

HSP 1 Score: 180.6 bits (457), Expect = 1.2e-42
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 1


Query: 1   MYDIFGKYGAIRQIRIGTNKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQ 60
           MYDIFGKYGAIRQIRIGTNKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQ
Sbjct: 35  MYDIFGKYGAIRQIRIGTNKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQ 94

Query: 61  AKMSKKFDQKKKEDEIARMQEKYGVSTKDK 91
           AKMSKKFDQKKKEDEIARMQEKYGVSTKDK
Sbjct: 95  AKMSKKFDQKKKEDEIARMQEKYGVSTKDK 124

[Close]

BLAST of Cp4.1LG16g08510 vs. NCBI nr
Match: gi|356554173|ref|XP_003545423.1| (PREDICTED: splicing factor 3B subunit 6-like protein [Glycine max])

HSP 1 Score: 180.3 bits (456), Expect = 1.5e-42
Identity = 89/90 (98.89%), Postives = 90/90 (100.00%), Query Frame = 1


Query: 1   MYDIFGKYGAIRQIRIGTNKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQ 60
           MYDIFGKYGAIRQIRIGTNKDTRGTAF+VYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQ
Sbjct: 35  MYDIFGKYGAIRQIRIGTNKDTRGTAFIVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQ 94

Query: 61  AKMSKKFDQKKKEDEIARMQEKYGVSTKDK 91
           AKMSKKFDQKKKEDEIARMQEKYGVSTKDK
Sbjct: 95  AKMSKKFDQKKKEDEIARMQEKYGVSTKDK 124

[Close]

BLAST of Cp4.1LG16g08510 vs. NCBI nr
Match: gi|659097475|ref|XP_008449647.1| (PREDICTED: splicing factor 3B subunit 6-like protein [Cucumis melo])

HSP 1 Score: 179.9 bits (455), Expect = 2.0e-42
Identity = 89/90 (98.89%), Postives = 90/90 (100.00%), Query Frame = 1


Query: 1   MYDIFGKYGAIRQIRIGTNKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQ 60
           MYDIFGKYGAIRQIRIGTNKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQ
Sbjct: 36  MYDIFGKYGAIRQIRIGTNKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQ 95

Query: 61  AKMSKKFDQKKKEDEIARMQEKYGVSTKDK 91
           AKMSKKFDQKKKEDE+ARMQEKYGVSTKDK
Sbjct: 96  AKMSKKFDQKKKEDELARMQEKYGVSTKDK 125

[Close]

BLAST of Cp4.1LG16g08510 vs. NCBI nr
Match: gi|802558799|ref|XP_012065832.1| (PREDICTED: splicing factor 3B subunit 6-like protein [Jatropha curcas])

HSP 1 Score: 179.1 bits (453), Expect = 3.4e-42
Identity = 89/90 (98.89%), Postives = 90/90 (100.00%), Query Frame = 1


Query: 1   MYDIFGKYGAIRQIRIGTNKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQ 60
           MYDIFGKYGAIRQIRIGTNKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQ
Sbjct: 35  MYDIFGKYGAIRQIRIGTNKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQ 94

Query: 61  AKMSKKFDQKKKEDEIARMQEKYGVSTKDK 91
           AKMSKKFDQKKKE+EIARMQEKYGVSTKDK
Sbjct: 95  AKMSKKFDQKKKEEEIARMQEKYGVSTKDK 124

The following BLAST results are available for this feature:

BLAST of Cp4.1LG16g08510 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SF3B6_ARATH	2.1e-39	88.89	Splicing factor 3B subunit 6-like protein OS=Arabidopsis thaliana GN=At5g12190 P...	[more]
SF3B6_MOUSE	2.2e-28	65.52	Splicing factor 3B subunit 6 OS=Mus musculus GN=Sf3b6 PE=1 SV=1	[more]
SF3B6_HUMAN	2.2e-28	65.52	Splicing factor 3B subunit 6 OS=Homo sapiens GN=SF3B6 PE=1 SV=1	[more]
SF3B6_DROME	1.8e-27	64.04	Splicing factor 3B subunit 6-like protein OS=Drosophila melanogaster GN=CG13298 ...	[more]
SF3B6_CAEEL	5.9e-26	61.18	Splicing factor 3B subunit 6-like protein OS=Caenorhabditis elegans GN=C50D2.5 P...	[more]

BLAST of Cp4.1LG16g08510 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0B2S153_GLYSO	8.2e-43	100.00	Pre-mRNA branch site p14-like protein OS=Glycine soja GN=glysoja_004058 PE=4 SV=...	[more]
A0A0L9UUV9_PHAAN	8.2e-43	100.00	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan07g035900 PE=4 SV=1	[more]
I1JIW3_SOYBN	8.2e-43	100.00	Uncharacterized protein OS=Glycine max GN=GLYMA_02G278800 PE=4 SV=1	[more]
B7FGI3_MEDTR	8.2e-43	100.00	Pre-mRNA branch site p14-like protein OS=Medicago truncatula GN=MTR_5g089300 PE=...	[more]
V7B6G4_PHAVU	8.2e-43	100.00	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_008G202000g PE=4 SV=1	[more]

BLAST of Cp4.1LG16g08510 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G12190.1	1.2e-40	88.89	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G14870.1	7.2e-14	76.19	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

BLAST of Cp4.1LG16g08510 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|922357372\|ref\|XP_003617230.2\|	1.2e-42	100.00	Pre-mRNA branch site p14-like protein [Medicago truncatula]	[more]
gi\|356501392\|ref\|XP_003519509.1\|	1.2e-42	100.00	PREDICTED: splicing factor 3B subunit 6-like protein [Glycine max]	[more]
gi\|356554173\|ref\|XP_003545423.1\|	1.5e-42	98.89	PREDICTED: splicing factor 3B subunit 6-like protein [Glycine max]	[more]
gi\|659097475\|ref\|XP_008449647.1\|	2.0e-42	98.89	PREDICTED: splicing factor 3B subunit 6-like protein [Cucumis melo]	[more]
gi\|802558799\|ref\|XP_012065832.1\|	3.4e-42	98.89	PREDICTED: splicing factor 3B subunit 6-like protein [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0000166	nucleotide binding
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR000504	RRM_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0071013	catalytic step 2 spliceosome
cellular_component	GO:0071011	precatalytic spliceosome
cellular_component	GO:0005689	U12-type spliceosomal complex
cellular_component	GO:0005686	U2 snRNP
cellular_component	GO:0005684	U2-type spliceosomal complex
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG16g08510.1	Cp4.1LG16g08510.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 2..53 score: 1.3
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 1..60 score: 12
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 2..73 score: 1.9
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 1..63 score: 4.48
None	No IPR available	PANTHER	PTHR12785	FAMILY NOT NAMED	coord: 1..88 score: 5.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG16g08510	Cucsa.086930	Cucumber (Gy14) v1	cgycpeB0160
Cp4.1LG16g08510	CmaCh20G001170	Cucurbita maxima (Rimu)	cmacpeB564
Cp4.1LG16g08510	CmaCh02G012820	Cucurbita maxima (Rimu)	cmacpeB627
Cp4.1LG16g08510	CmoCh02G013240	Cucurbita moschata (Rifu)	cmocpeB576
Cp4.1LG16g08510	CmoCh20G001250	Cucurbita moschata (Rifu)	cmocpeB517
Cp4.1LG16g08510	Cla008584	Watermelon (97103) v1	cpewmB287
Cp4.1LG16g08510	Csa6G430680	Cucumber (Chinese Long) v2	cpecuB281
Cp4.1LG16g08510	MELO3C014555	Melon (DHL92) v3.5.1	cpemeB278
Cp4.1LG16g08510	ClCG02G022780	Watermelon (Charleston Gray)	cpewcgB255
Cp4.1LG16g08510	CSPI06G23790	Wild cucumber (PI 183967)	cpecpiB283
Cp4.1LG16g08510	Lsi10G010990	Bottle gourd (USVL1VR-Ls)	cpelsiB227
Cp4.1LG16g08510	MELO3C014555.2	Melon (DHL92) v3.6.1	cpemedB324
Cp4.1LG16g08510	Bhi10G000190	Wax gourd	cpewgoB0354
Cp4.1LG16g08510	CsGy6G023130	Cucumber (Gy14) v2	cgybcpeB755
Cp4.1LG16g08510	Carg02682	Silver-seed gourd	carcpeB1273

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG16g08510	Cp4.1LG05g04730	Cucurbita pepo (Zucchini)	cpecpeB310

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG16g08510	Melon (DHL92) v3.6.1	cpemedB323
Cp4.1LG16g08510	Silver-seed gourd	carcpeB0733
Cp4.1LG16g08510	Cucumber (Chinese Long) v3	cpecucB0348