CsGy6G023130 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy6G023130
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	splicing factor 3B subunit 6-like protein
Location	Chr6 : 23397764 .. 23400180 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAACATTCAGCCTTCCCCGCAAGGGAAATACGAGGCTGCCGCCGGAGGTCAACAGAGTCTTGTTCGTAAGAAATTTGCCCTTCAACATCACCAGCGAAGAGATGTACGATATCTTCGGCAAATACGGCGCGATACGGCAGATTCGGATTGGTACGAACAAGGATACTAGAGGTACCGCCTTTGTCGTTTACGAAGATATCTATGATGCTAAGACGGCGGTGGATCATCTCTCCGGTTTCAATGTTGCGAATCGGTATCTGATCGTGTTGTACTACCAGCAAGCCAAGATGAGTAAAAAATTCGACCAGAAGAAGAAAGAGGATGAACTCGCTAGGATGCAGGAGAAGTACGGTGTTTCCACGAAAGATAAGTAAAAGGTGTGATATGGAACTTATTTTTCTTAGGATTTTCTTAAGCAATCCTGGAATTGAGTCGAATTGTTTGTTACTTGAAGTTCTCTCTTTTTAGGGTTTAATAGCTGTACCGATGTTTTTAATTGCTGGTCATGAGTGGGCAATGGTTTACTATTTTTGCTTAAATTGTCTTTTTTTTCTTAGTCTTTATATTCTTTGATCATGTCATTATCTGTTTCCGTTAATTATAGTTAAATTGTAAGCATTTGTTCTTAATACCTATCTGGCTTTTTTCAATTCTCTTATATGGTTGGAGTGCTTGGGTAGTAGTTAAGTTCTAAGATATGAATGTGGAAGTTATTACTTTGTGAGTGTGTAGTAAGCTTGGTATCTGTCAGGGGTGTGCAGCCGTTGGTCGGAACCATTTTTTCAACCACGAACTGCCACCGAACCGAATACGGTAGTAAACCGACCTCGAGCATCAAGAAGTAAAAGTCGGTCAACTATATTCTTTAAAACATTTTCCAAAAGAATCCAGTTTGTTTTTTCCCAAACCAACACCAACCGACCTCTTTCTTCTCCGTCCAACCTCCTTCAGTTGGTTGTCTCAGTTTTTCGGTCTGTCACACTCACCCCCTCTATGGTGGCTCTCATCTAATTGGAATAACAGAGCATAAAGCATTCAGTATAATATATACTTTGGGATTATCATCTGTTCTTTCAGAAGCTGATAAAATGGTAGATCATTGTTTGTGCTTGTCAGTGTGCTAGGAAGAAATGACTATGATATTGCATTAGAAATTGAAATTCAGGCCGTCTTTGTGGAAATCTGTTTGCATTTTGCATGATTAAATCTAGTTTGTTGCTCAACAGGTAATTGTTGGGAGAGTAATAATGGAGGAAGTTTTGGCAAATTAGAGACCAACCTATGAGTAGACAGTATGAATCTGTTATAGCTCTACTTTCCTTCTTTGGTTGTTCTAAAGTAACTTTCTATGATGGAAACTTTTTAGTTTGCAATATTCATATGCTTTTAAGATTTATGCTATTTTTCTTAGGGCTTCTCAAGATGATACACCCATCTTTATGCAGTCTCATTACACATGAAAAATGAATTAAAATATTTCAAATAAAGAAGTAAGAGGAATTTGTCACGGTGGTAATTAATGATTAGACAATTTGGTGGGATAGGTAAAGATATGTGCTTCTTGCCATCTGAATAGCCCTTGCACAACATCAAGTATCTTAAATTTTATTTTCATAATCGATGCTTTATATTGAAATCATGCATTGAGTAAGGTTTCCTTGGTTTTCTGTCCGACTATTTAGAAAGTCATTTCAAACTAGTACACTACGTATAGTATAAGAGTGAAAGTGAGGATATATCTATCACTCACTTATGTTGACATTATCTTCTATTTCAATCTAAGTCTATACCTTTTTGCATTCAGCATATTCTTGTGGAGAAGTATCAAAGTTTCGAAGATACTAAGTACAAAAATGGCGTTTGTGCCGTTGTTACGAATTCCTATGGGGCCATTTGAACAGAAAAAGAGTGTCTTTGAAGATGATGGTTTAGAAAGCAAGGCGTCTTCTTCGCCCTTACCTAAAATGTTTCCCTTTCATGTTTATTTTTATATTACAATTTTGTTGAAGTTTCTGTTTATGTTGTGTTTGGATTTGGATTGTATTTTCACATTCAGAGTGTCAACAACTATGATAGATCCTCGAGTATATTTTAGTAAAAGAAAGTATATTGTTCGAATCTGTGGGATCGTCCTGTAAAGGACTAATGTGTGTTAGAAATGTGCTCATTGTGTATGATTTGCTCTACCAACCACCAAACCCCCTCATTGTGTATGATTTGCTCTACAAACCACCAAATCCCCAATTATTATTTAGGAAAGAAGTCGATAATTGTATTAGTTTAAATTTAGAACTAATATTTAACTAATTTATAGATTCAATTTTATTTTGTTTTGCAAGATTTAATGTATAACTTTCATATGTTGTAATTTGTAAGGGCTAATGTATGTTAGAAAATAATGGCAGTGATTTTT

mRNA sequence

ATGGCAACATTCAGCCTTCCCCGCAAGGGAAATACGAGGCTGCCGCCGGAGGTCAACAGAGTCTTGTTCGTAAGAAATTTGCCCTTCAACATCACCAGCGAAGAGATGTACGATATCTTCGGCAAATACGGCGCGATACGGCAGATTCGGATTGGTACGAACAAGGATACTAGAGGTACCGCCTTTGTCGTTTACGAAGATATCTATGATGCTAAGACGGCGGTGGATCATCTCTCCGGTTTCAATGTTGCGAATCGGTATCTGATCGTGTTGTACTACCAGCAAGCCAAGATGAGTAAAAAATTCGACCAGAAGAAGAAAGAGGATGAACTCGCTAGGATGCAGGAGAAGTACGGTCATATTCTTGTGGAGAAGTATCAAAGTTTCGAAGATACTAAGTACAAAAATGGCGTTTGTGCCGTTGTTACGAATTCCTATGGGGCCATTTGAACAGAAAAAGAGTGTCTTTGAAGATGATGGTTTAGAAAGCAAGGCGTCTTCTTCGCCCTTACCTAAAATGTTTCCCTTTCATGTTTATTTTTATATTACAATTTTGTTGAAGTTTCTGTTTATGTTGTGTTTGGATTTGGATTGTATTTTCACATTCAGAGTGTCAACAACTATGATAGATCCTCGAGTATATTTTAGTAAAAGAAAGTATATTGTTCGAATCTGTGGGATCGTCCTGTAAAGGACTAATGTGTGTTAGAAATGTGCTCATTGTGTATGATTTGCTCTACCAACCACCAAACCCCCTCATTGTGTATGATTTGCTCTACAAACCACCAAATCCCCAATTATTATTTAGGAAAGAAGTCGATAATTGTATTAGTTTAAATTTAGAACTAATATTTAACTAATTTATAGATTCAATTTTATTTTGTTTTGCAAGATTTAATGTATAACTTTCATATGTTGTAATTTGTAAGGGCTAATGTATGTTAGAAAATAATGGCAGTGATTTTT

Coding sequence (CDS)

ATGGCAACATTCAGCCTTCCCCGCAAGGGAAATACGAGGCTGCCGCCGGAGGTCAACAGAGTCTTGTTCGTAAGAAATTTGCCCTTCAACATCACCAGCGAAGAGATGTACGATATCTTCGGCAAATACGGCGCGATACGGCAGATTCGGATTGGTACGAACAAGGATACTAGAGGTACCGCCTTTGTCGTTTACGAAGATATCTATGATGCTAAGACGGCGGTGGATCATCTCTCCGGTTTCAATGTTGCGAATCGGTATCTGATCGTGTTGTACTACCAGCAAGCCAAGATGAGTAAAAAATTCGACCAGAAGAAGAAAGAGGATGAACTCGCTAGGATGCAGGAGAAGTACGGTCATATTCTTGTGGAGAAGTATCAAAGTTTCGAAGATACTAAGTACAAAAATGGCGTTTGTGCCGTTGTTACGAATTCCTATGGGGCCATTTGA

Protein sequence

MATFSLPRKGNTRLPPEVNRVLFVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDELARMQEKYGHILVEKYQSFEDTKYKNGVCAVVTNSYGAI

Homology

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BLAST of CsGy6G023130 vs. NCBI nr
Match: XP_008449647.1 (PREDICTED: splicing factor 3B subunit 6-like protein [Cucumis melo] >XP_011657610.1 PREDICTED: splicing factor 3B subunit 6-like protein [Cucumis sativus] >KGN48092.1 hypothetical protein Csa_6G430680 [Cucumis sativus])

HSP 1 Score: 241.1 bits (614), Expect = 2.4e-60
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 1   MATFSLPRKGNTRLPPEVNRVLFVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT 60
           MATFSLPRKGNTRLPPEVNRVLFVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT
Sbjct: 1   MATFSLPRKGNTRLPPEVNRVLFVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT 60

Query: 61  AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDELARMQEKYG 120
           AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDELARMQEKYG
Sbjct: 61  AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDELARMQEKYG 119

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BLAST of CsGy6G023130 vs. NCBI nr
Match: XP_022152995.1 (splicing factor 3B subunit 6-like protein [Momordica charantia] >XP_022958187.1 splicing factor 3B subunit 6-like protein [Cucurbita moschata] >XP_022995172.1 splicing factor 3B subunit 6-like protein [Cucurbita maxima] >XP_023533539.1 splicing factor 3B subunit 6-like protein [Cucurbita pepo subsp. pepo] >XP_023533540.1 splicing factor 3B subunit 6-like protein [Cucurbita pepo subsp. pepo])

HSP 1 Score: 239.2 bits (609), Expect = 9.0e-60
Identity = 117/119 (98.32%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 1   MATFSLPRKGNTRLPPEVNRVLFVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT 60
           MATFSLPRKGNTRLPPEVNRVL+VRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT
Sbjct: 1   MATFSLPRKGNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT 60

Query: 61  AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDELARMQEKYG 120
           AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDE+ARMQEKYG
Sbjct: 61  AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDEIARMQEKYG 119

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BLAST of CsGy6G023130 vs. NCBI nr
Match: XP_024639474.1 (splicing factor 3B subunit 6-like protein [Medicago truncatula] >ACJ83862.1 unknown [Medicago truncatula] >AFK49453.1 unknown [Medicago truncatula] >AET00189.2 Pre-mRNA branch site p14-like protein [Medicago truncatula])

HSP 1 Score: 228.0 bits (580), Expect = 2.1e-56
Identity = 114/119 (95.80%), Postives = 116/119 (97.48%), Query Frame = 0


Query: 1   MATFSLPRKGNTRLPPEVNRVLFVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT 60
           M T SL RKGNTRLPPEVNRVL+VRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT
Sbjct: 1   MTTISL-RKGNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT 60

Query: 61  AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDELARMQEKYG 120
           AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDE+ARMQEKYG
Sbjct: 61  AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDEIARMQEKYG 118

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BLAST of CsGy6G023130 vs. NCBI nr
Match: XP_010651534.1 (PREDICTED: splicing factor 3B subunit 6-like protein [Vitis vinifera] >CAN62387.1 hypothetical protein VITISV_037629 [Vitis vinifera] >CAN67767.1 hypothetical protein VITISV_042768 [Vitis vinifera] >CBI24269.3 unnamed protein product, partial [Vitis vinifera])

HSP 1 Score: 227.6 bits (579), Expect = 2.7e-56
Identity = 114/119 (95.80%), Postives = 117/119 (98.32%), Query Frame = 0


Query: 1   MATFSLPRKGNTRLPPEVNRVLFVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT 60
           MAT SL RKGNTRLPPEVNRVL+VRNLPFNI+SEEMYDIFGKYGAIRQIRIGTNKDTRGT
Sbjct: 1   MATISL-RKGNTRLPPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGTNKDTRGT 60

Query: 61  AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDELARMQEKYG 120
           AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDELA+MQEKYG
Sbjct: 61  AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDELAKMQEKYG 118

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BLAST of CsGy6G023130 vs. NCBI nr
Match: XP_021888985.1 (splicing factor 3B subunit 6-like protein [Carica papaya])

HSP 1 Score: 227.6 bits (579), Expect = 2.7e-56
Identity = 114/119 (95.80%), Postives = 117/119 (98.32%), Query Frame = 0


Query: 1   MATFSLPRKGNTRLPPEVNRVLFVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT 60
           MAT SL RKGNTRLPPEVNRVL+VRNLPFNI+SEEMYDIFGKYGAIRQIRIGTNKDTRGT
Sbjct: 1   MATISL-RKGNTRLPPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGTNKDTRGT 60

Query: 61  AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDELARMQEKYG 120
           AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDELA+MQEKYG
Sbjct: 61  AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDELAKMQEKYG 118

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BLAST of CsGy6G023130 vs. TAIR10
Match: AT5G12190.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 207.6 bits (527), Expect = 5.3e-54
Identity = 103/119 (86.55%), Postives = 109/119 (91.60%), Query Frame = 0


Query: 1   MATFSLPRKGNTRLPPEVNRVLFVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT 60
           M T SL RK NTRLPPEVNRVL+VRNLPFNITSEEMYDIFGKYGAIRQIRIG +K T+GT
Sbjct: 1   MTTISL-RKSNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGCDKATKGT 60

Query: 61  AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDELARMQEKYG 120
           AFVVYEDIYDAK AVDHLSGFNVANRYLIVLYYQ AKMSKKFDQKK EDE+ ++QEKYG
Sbjct: 61  AFVVYEDIYDAKNAVDHLSGFNVANRYLIVLYYQHAKMSKKFDQKKSEDEITKLQEKYG 118

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BLAST of CsGy6G023130 vs. TAIR10
Match: AT2G14870.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 111.7 bits (278), Expect = 3.9e-25
Identity = 50/70 (71.43%), Postives = 59/70 (84.29%), Query Frame = 0


Query: 9  KGNTRLPPEVNRVLFVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGTAFVVYEDI 68
          K N RLPPEV R+L++ NLPF+ITSE+ YD+FG+Y  IRQ+RIG  K T+GTAFVVYEDI
Sbjct: 9  KQNPRLPPEVTRLLYICNLPFSITSEDTYDLFGRYSTIRQVRIGCEKGTKGTAFVVYEDI 68

Query: 69 YDAKTAVDHL 79
          YDAK AVDHL
Sbjct: 69 YDAKKAVDHL 78

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BLAST of CsGy6G023130 vs. TAIR10
Match: AT2G21440.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 52.0 bits (123), Expect = 3.7e-07
Identity = 42/132 (31.82%), Postives = 65/132 (49.24%), Query Frame = 0


Query: 17  EVNRVLFVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTR---GTAFVVYEDI---YD 76
           +  R LF+RNLPF++T EE+   F  +G +  + +  +K T+   GTAFV ++       
Sbjct: 558 DFERTLFIRNLPFDVTKEEVKQRFTVFGEVESLSLVLHKVTKRPEGTAFVKFKTADASVA 617

Query: 77  AKTAVDHLSGFNV--ANRYLIVLYYQQAKMSKKFDQKKKEDELARMQEKYGHILVEKYQS 136
           A +A D  SG  V    R L V+     K +K  + KK E++    +  Y   L ++ Q 
Sbjct: 618 AISAADTASGVGVLLKGRQLNVMRAVGKKAAKDIELKKTEEKNVDHRNLY---LAKEGQI 677

Query: 137 FEDTKYKNGVCA 141
            +DT    GV A
Sbjct: 678 LDDTPAAEGVSA 686

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BLAST of CsGy6G023130 vs. TAIR10
Match: AT2G30260.1 (U2 small nuclear ribonucleoprotein B)

HSP 1 Score: 51.6 bits (122), Expect = 4.8e-07
Identity = 30/89 (33.71%), Postives = 46/89 (51.69%), Query Frame = 0


Query: 5   SLPRKGNTRLPPEVNRVLFVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGTAFVV 64
           S    G   +PP  N +LF++NLP   TS  +  +F +Y   ++IR+   K   G AFV 
Sbjct: 145 SFQPSGQETMPP--NNILFIQNLPHETTSMMLQLLFEQYPGFKEIRMIDAKP--GIAFVE 204

Query: 65  YEDIYDAKTAVDHLSGFNVANRYLIVLYY 94
           YED   A  A+  L GF +  +  +V+ +
Sbjct: 205 YEDDVQASIAMQPLQGFKITPQNPMVISF 229

[Close]

BLAST of CsGy6G023130 vs. TAIR10
Match: AT5G08695.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 51.6 bits (122), Expect = 4.8e-07
Identity = 38/111 (34.23%), Postives = 56/111 (50.45%), Query Frame = 0


Query: 22  LFVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDT---RGTAFVVYEDIYDAKTAVDHL 81
           LFV  LP++ T EE+ + F K+G I ++ +  +KDT   RG AFV+Y     AK A+D L
Sbjct: 229 LFVHGLPYSTTEEELMEHFSKFGDISEVHLVLDKDTRSCRGMAFVLYLIPESAKMAMDKL 288

Query: 82  SGFNVANRYLIVLYYQQAKMS-KKFDQ--------KKKEDELARMQEKYGH 121
                  R L +L  +   MS K+ D         KK+ +E  +  E  G+
Sbjct: 289 DKLPFQGRTLHILPAKPRAMSAKQVDNSSNLPKSFKKEREEQRKASEACGN 339

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BLAST of CsGy6G023130 vs. Swiss-Prot
Match: sp|Q9FMP4|SF3B6_ARATH (Splicing factor 3B subunit 6-like protein OS=Arabidopsis thaliana OX=3702 GN=At5g12190 PE=2 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 9.5e-53
Identity = 103/119 (86.55%), Postives = 109/119 (91.60%), Query Frame = 0


Query: 1   MATFSLPRKGNTRLPPEVNRVLFVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT 60
           M T SL RK NTRLPPEVNRVL+VRNLPFNITSEEMYDIFGKYGAIRQIRIG +K T+GT
Sbjct: 1   MTTISL-RKSNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGCDKATKGT 60

Query: 61  AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDELARMQEKYG 120
           AFVVYEDIYDAK AVDHLSGFNVANRYLIVLYYQ AKMSKKFDQKK EDE+ ++QEKYG
Sbjct: 61  AFVVYEDIYDAKNAVDHLSGFNVANRYLIVLYYQHAKMSKKFDQKKSEDEITKLQEKYG 118

[Close]

BLAST of CsGy6G023130 vs. Swiss-Prot
Match: sp|Q9Y3B4|SF3B6_HUMAN (Splicing factor 3B subunit 6 OS=Homo sapiens OX=9606 GN=SF3B6 PE=1 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 2.4e-40
Identity = 75/112 (66.96%), Postives = 93/112 (83.04%), Query Frame = 0


Query: 8   RKGNTRLPPEVNRVLFVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGTAFVVYED 67
           ++ N RLPPEVNR+L++RNLP+ IT+EEMYDIFGKYG IRQIR+G   +TRGTA+VVYED
Sbjct: 7   KRANIRLPPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYED 66

Query: 68  IYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDELARMQEKYG 120
           I+DAK A DHLSGFNV NRYL+VLYY   +  +K D KKKE++L  ++EKYG
Sbjct: 67  IFDAKNACDHLSGFNVCNRYLVVLYYNANRAFQKMDTKKKEEQLKLLKEKYG 118

[Close]

BLAST of CsGy6G023130 vs. Swiss-Prot
Match: sp|P59708|SF3B6_MOUSE (Splicing factor 3B subunit 6 OS=Mus musculus OX=10090 GN=Sf3b6 PE=1 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 2.4e-40
Identity = 75/112 (66.96%), Postives = 93/112 (83.04%), Query Frame = 0


Query: 8   RKGNTRLPPEVNRVLFVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGTAFVVYED 67
           ++ N RLPPEVNR+L++RNLP+ IT+EEMYDIFGKYG IRQIR+G   +TRGTA+VVYED
Sbjct: 7   KRANIRLPPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYED 66

Query: 68  IYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDELARMQEKYG 120
           I+DAK A DHLSGFNV NRYL+VLYY   +  +K D KKKE++L  ++EKYG
Sbjct: 67  IFDAKNACDHLSGFNVCNRYLVVLYYNANRAFQKMDTKKKEEQLKLLKEKYG 118

[Close]

BLAST of CsGy6G023130 vs. Swiss-Prot
Match: sp|Q9VRV7|SF3B6_DROME (Splicing factor 3B subunit 6 OS=Drosophila melanogaster OX=7227 GN=Sf3b6 PE=1 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 4.6e-39
Identity = 75/111 (67.57%), Postives = 92/111 (82.88%), Query Frame = 0


Query: 8   RKGNTRLPPEVNRVLFVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGTAFVVYED 67
           ++ + RLPPEVNR+L+VRNLP+ ITS+EMYDIFGK+GAIRQIR+G   +TRGTAFVVYED
Sbjct: 3   KRNHIRLPPEVNRLLYVRNLPYKITSDEMYDIFGKFGAIRQIRVGNTPETRGTAFVVYED 62

Query: 68  IYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDELARMQEKY 119
           I+DAK A DHLSGFNV NRYL+VLYYQ  K  K+ D  KK++EL  ++ KY
Sbjct: 63  IFDAKNACDHLSGFNVCNRYLVVLYYQSNKAFKRVDMDKKQEELNNIKAKY 113

[Close]

BLAST of CsGy6G023130 vs. Swiss-Prot
Match: sp|Q8ITY4|SF3B6_CAEEL (Splicing factor 3B subunit 6-like protein OS=Caenorhabditis elegans OX=6239 GN=C50D2.5 PE=3 SV=2)

HSP 1 Score: 154.5 bits (389), Expect = 9.6e-37
Identity = 68/107 (63.55%), Postives = 91/107 (85.05%), Query Frame = 0


Query: 13  RLPPEVNRVLFVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGTAFVVYEDIYDAK 72
           +LPPEVNR+L+++NLP+ IT+EEMY+IFGK+GA+RQIR+G   +TRGTAFVVYEDI+DAK
Sbjct: 12  KLPPEVNRILYIKNLPYKITTEEMYEIFGKFGAVRQIRVGNTAETRGTAFVVYEDIFDAK 71

Query: 73  TAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDELARMQEKYG 120
           TA +HLSG+NV+NRYL+VLYYQ  K  K+ D +K   +L  ++E+YG
Sbjct: 72  TACEHLSGYNVSNRYLVVLYYQATKAWKRMDTEKARTKLEDIKERYG 118

[Close]

BLAST of CsGy6G023130 vs. TrEMBL
Match: tr|A0A1S3BMI0|A0A1S3BMI0_CUCME (splicing factor 3B subunit 6-like protein OS=Cucumis melo OX=3656 GN=LOC103491466 PE=4 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 1.6e-60
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 1   MATFSLPRKGNTRLPPEVNRVLFVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT 60
           MATFSLPRKGNTRLPPEVNRVLFVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT
Sbjct: 1   MATFSLPRKGNTRLPPEVNRVLFVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT 60

Query: 61  AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDELARMQEKYG 120
           AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDELARMQEKYG
Sbjct: 61  AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDELARMQEKYG 119

[Close]

BLAST of CsGy6G023130 vs. TrEMBL
Match: tr|A0A0A0KI93|A0A0A0KI93_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G430680 PE=4 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 1.6e-60
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 1   MATFSLPRKGNTRLPPEVNRVLFVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT 60
           MATFSLPRKGNTRLPPEVNRVLFVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT
Sbjct: 1   MATFSLPRKGNTRLPPEVNRVLFVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT 60

Query: 61  AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDELARMQEKYG 120
           AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDELARMQEKYG
Sbjct: 61  AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDELARMQEKYG 119

[Close]

BLAST of CsGy6G023130 vs. TrEMBL
Match: tr|B7FGI3|B7FGI3_MEDTR (Pre-mRNA branch site p14-like protein OS=Medicago truncatula OX=3880 GN=11431415 PE=2 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 1.4e-56
Identity = 114/119 (95.80%), Postives = 116/119 (97.48%), Query Frame = 0


Query: 1   MATFSLPRKGNTRLPPEVNRVLFVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT 60
           M T SL RKGNTRLPPEVNRVL+VRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT
Sbjct: 1   MTTISL-RKGNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT 60

Query: 61  AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDELARMQEKYG 120
           AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDE+ARMQEKYG
Sbjct: 61  AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDEIARMQEKYG 118

[Close]

BLAST of CsGy6G023130 vs. TrEMBL
Match: tr|I1JIW3|I1JIW3_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100802877 PE=4 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 1.8e-56
Identity = 114/119 (95.80%), Postives = 116/119 (97.48%), Query Frame = 0


Query: 1   MATFSLPRKGNTRLPPEVNRVLFVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT 60
           MA  SL RKGNTRLPPEVNRVL+VRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT
Sbjct: 1   MAAISL-RKGNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT 60

Query: 61  AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDELARMQEKYG 120
           AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDE+ARMQEKYG
Sbjct: 61  AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDEIARMQEKYG 118

[Close]

BLAST of CsGy6G023130 vs. TrEMBL
Match: tr|A5AES3|A5AES3_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_06s0009g02770 PE=4 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 1.8e-56
Identity = 114/119 (95.80%), Postives = 117/119 (98.32%), Query Frame = 0


Query: 1   MATFSLPRKGNTRLPPEVNRVLFVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGT 60
           MAT SL RKGNTRLPPEVNRVL+VRNLPFNI+SEEMYDIFGKYGAIRQIRIGTNKDTRGT
Sbjct: 1   MATISL-RKGNTRLPPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGTNKDTRGT 60

Query: 61  AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDELARMQEKYG 120
           AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDELA+MQEKYG
Sbjct: 61  AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDELAKMQEKYG 118

The following BLAST results are available for this feature:

BLAST of CsGy6G023130 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008449647.1	2.4e-60	100.00	PREDICTED: splicing factor 3B subunit 6-like protein [Cucumis melo] >XP_01165761...	[more]
XP_022152995.1	9.0e-60	98.32	splicing factor 3B subunit 6-like protein [Momordica charantia] >XP_022958187.1 ...	[more]
XP_024639474.1	2.1e-56	95.80	splicing factor 3B subunit 6-like protein [Medicago truncatula] >ACJ83862.1 unkn...	[more]
XP_010651534.1	2.7e-56	95.80	PREDICTED: splicing factor 3B subunit 6-like protein [Vitis vinifera] >CAN62387....	[more]
XP_021888985.1	2.7e-56	95.80	splicing factor 3B subunit 6-like protein [Carica papaya]	[more]

BLAST of CsGy6G023130 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G12190.1	5.3e-54	86.55	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G14870.1	3.9e-25	71.43	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G21440.1	3.7e-07	31.82	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G30260.1	4.8e-07	33.71	U2 small nuclear ribonucleoprotein B	[more]
AT5G08695.1	4.8e-07	34.23	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

BLAST of CsGy6G023130 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9FMP4\|SF3B6_ARATH	9.5e-53	86.55	Splicing factor 3B subunit 6-like protein OS=Arabidopsis thaliana OX=3702 GN=At5...	[more]
sp\|Q9Y3B4\|SF3B6_HUMAN	2.4e-40	66.96	Splicing factor 3B subunit 6 OS=Homo sapiens OX=9606 GN=SF3B6 PE=1 SV=1	[more]
sp\|P59708\|SF3B6_MOUSE	2.4e-40	66.96	Splicing factor 3B subunit 6 OS=Mus musculus OX=10090 GN=Sf3b6 PE=1 SV=1	[more]
sp\|Q9VRV7\|SF3B6_DROME	4.6e-39	67.57	Splicing factor 3B subunit 6 OS=Drosophila melanogaster OX=7227 GN=Sf3b6 PE=1 SV...	[more]
sp\|Q8ITY4\|SF3B6_CAEEL	9.6e-37	63.55	Splicing factor 3B subunit 6-like protein OS=Caenorhabditis elegans OX=6239 GN=C...	[more]

BLAST of CsGy6G023130 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BMI0\|A0A1S3BMI0_CUCME	1.6e-60	100.00	splicing factor 3B subunit 6-like protein OS=Cucumis melo OX=3656 GN=LOC10349146...	[more]
tr\|A0A0A0KI93\|A0A0A0KI93_CUCSA	1.6e-60	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G430680 PE=4 SV=1	[more]
tr\|B7FGI3\|B7FGI3_MEDTR	1.4e-56	95.80	Pre-mRNA branch site p14-like protein OS=Medicago truncatula OX=3880 GN=11431415...	[more]
tr\|I1JIW3\|I1JIW3_SOYBN	1.8e-56	95.80	Uncharacterized protein OS=Glycine max OX=3847 GN=100802877 PE=4 SV=1	[more]
tr\|A5AES3\|A5AES3_VITVI	1.8e-56	95.80	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_06s0009g02770 PE=4 SV=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR035979	RBD_domain_sf
IPR034150	SF3B14_RRM
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR000504	RRM_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0071013	catalytic step 2 spliceosome
cellular_component	GO:0071011	precatalytic spliceosome
cellular_component	GO:0005689	U12-type spliceosomal complex
cellular_component	GO:0005686	U2 snRNP
cellular_component	GO:0005684	U2-type spliceosomal complex
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy6G023130.1	CsGy6G023130.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 21..91 e-value: 1.4E-18 score: 77.7
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 22..88 e-value: 7.9E-18 score: 64.0
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 20..95 score: 16.671
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	G3DSA:3.30.70.330		coord: 16..120 e-value: 2.1E-23 score: 84.4
None	No IPR available	PANTHER	PTHR12785	FAMILY NOT NAMED	coord: 9..119
IPR034150	SF3B14, RNA recognition motif	PANTHER	PTHR12785:SF7	SPLICING FACTOR 3B SUBUNIT 6	coord: 9..119
IPR034150	SF3B14, RNA recognition motif	CDD	cd12241	RRM_SF3B14	coord: 18..94 e-value: 2.8351E-51 score: 159.319
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	SSF54928	RNA-binding domain, RBD	coord: 10..102

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy6G023130	Csa6G430680	Cucumber (Chinese Long) v2	cgybcuB281
CsGy6G023130	MELO3C014555	Melon (DHL92) v3.5.1	cgybmeB432
CsGy6G023130	ClCG02G022780	Watermelon (Charleston Gray)	cgybwcgB403
CsGy6G023130	CSPI06G23790	Wild cucumber (PI 183967)	cgybcpiB287
CsGy6G023130	CmaCh02G012820	Cucurbita maxima (Rimu)	cgybcmaB819
CsGy6G023130	CmaCh20G001170	Cucurbita maxima (Rimu)	cgybcmaB799
CsGy6G023130	CmoCh02G013240	Cucurbita moschata (Rifu)	cgybcmoB798
CsGy6G023130	CmoCh20G001250	Cucurbita moschata (Rifu)	cgybcmoB777
CsGy6G023130	Lsi10G010990	Bottle gourd (USVL1VR-Ls)	cgyblsiB379
CsGy6G023130	Cp4.1LG05g04730	Cucurbita pepo (Zucchini)	cgybcpeB845
CsGy6G023130	Cp4.1LG16g08510	Cucurbita pepo (Zucchini)	cgybcpeB755
CsGy6G023130	MELO3C014555.2	Melon (DHL92) v3.6.1	cgybmedB427
CsGy6G023130	Bhi10G000190	Wax gourd	cgybwgoB568
CsGy6G023130	Carg02682	Silver-seed gourd	carcgybB0914

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy6G023130	Silver-seed gourd	carcgybB0530
CsGy6G023130	Cucumber (Chinese Long) v3	cgybcucB298
CsGy6G023130	Watermelon (97103) v2	cgybwmbB408
CsGy6G023130	Watermelon (97103) v1	cgybwmB480