Cp4.1LG03g10490 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG03g10490
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionRNA-directed DNA methylation 1
LocationCp4.1LG03 : 11591204 .. 11593366 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGTAAAGCAAGGGGTGTAAGTTTGTGGGCTAAAGCTCTATGAACCGGTGGTTGAACCGGCCTTTTGAACAAATGTGGAACGTCTCCGATCTCCCCTCGCGCAAAAGCCAAACGCCGCGAACTCAAAACTGGTCTCTCAAATTCGAGCTTGATGAATAACTGAGCTATATTTTGTTGATCTGTCGCAAAATCCATATCGGAGAGGAGCTTCATCTCTACGATTGGACGCTCTCTCTCGCTTTTCGAATTACGAAGGTACTCACCATCACTCTCGCTTGTTGTCGATCCATTACCATCTCTGTTCATATGTAATAAATTCACTTGGTTTTGTGCTTCTTGCCGATAATCTCTATTCTTGTTCTTCCATTTCAGATTTCTACTTACCGACTCTCGTAATCTTTAATTTCCACTTGTTTTTACTCTGCTTTGAAATGCTTTCATTTTACAGGTCCGATGGGATTTTCGGTGCATTTGTATGAAAATTTATTGTTTATTTGTTTGTTTGAGAAGTCGATCGTAATTTTTTATCACTTGGTTGGTGGAGTCTTCCAGAATGTTGCTTAGAGGGATGAACATTCATCGTTTGATGCAAGTTCTTAGAAATTGCCCTAGATAGCGATGGTTATTAAGTGCACTGCTTATAATCTGAGCGTGATCCCTGGCGGAAACTGAGTGCATTGCTCCATAAGTTGCATGTGCGAGGTGGTTTTCGAGAATGGAGATGTCTATTAGTAAGATTGTGATGGCCTGATAGGGTGAATTTGTTTCTGCGTTGGACCCAGAACCAGAATTGAATTGGTTGATTTGTTCTATGTCTGTGATTAAATTTTGTAATGAACATGAGATTGAAAGTTTGAAGTACATTTTGTTTTATGCTAACTAAAAGCTGTTGTGCTCTTTTTCCATCTCAATAGTAATCTTTTGTATCTGTTGGATCTATTTATTGTGGTTGGCATCTCATATTACTAACTCTTCGTATACTCACATGAATCTTTAAACGTGCTGCTATTTGGTAATCTGTATTGTATTAATCGGCATCATAGCTAACCCATGATCACTTCTTGTCCAGAATTACATAATTGACAAAATGAAGAGGCCAATGCCGTGGAATGAACAAGTAGATGTTATATCATCAGGTGAATCTTCTTCCTCTGATTCAGAAACAGGAGTACAAAATGATGGATTCGAGTTCAAGCCTTCCATCGACGATTTCAAAATTCCTGCTAAAGAAATGACAGCTGAAGGTAATTTGACGCATTGCATAAGATCAATTCATAGTGTTTAATGATCAATGCTGCTGTATATATAAATTTTCATGTTCATAAGCTTTAAAAAAGAGGGTCTTTGAAATGTCGTTTAACGATGCAGGTACGTTGATTAAAAGGGCCGAAATGTATCAAGAATACATGAAACAGATCCAGATCCCAGCACAACGTGGTTCTGTAATACCATTTACAACATGGATGGGTTTAGGCAAATCTATAAAGCAGCTTTATGGTCAGCCTTTGCATTACTTGACTAACATTCTACTCAAACAGTGGGATCAATTAAGGTTCGGTAGTGTGGATGAATATAAGCCATTGGATACCGTAATTCATCCTAGTAAAGCTGAAGCAACTGTATGGCTGGTTGAAGAGATTCATAGGCGCACCTCGTCGCATCATCATGTTGCTAAACTGTGGTTATCAGACCCGATGCACGAAGCTTACGTTGACTCCATTTTCCCCCAACTTTGAAAGCTGCTTTCTGTTACGTTCGGGTCTGTGTCGATACTAAAACATATTTCTAGAAGGCTAACATGTTGATGACAATGTGAATTGTAATAGAAACAGCATAGTTCTTCAGTCACATTGCACTTTAATGTGTAGGTTTTTTTATATAATCCCATTGGGTTTCGTTGTATGCTCTTTGTAATATTATAGAGCTTCTTCAAACTTACATCCACGGCTTACATGCAACCATAATGAACAATCTTTGGGGAGATTCCTAGTTGATTCATTGACTGACTCCTCCTGTATGTGCTGCCCTTGTTTCACAGAATCACCATGGCCGCAAGCTGTTAATATGTTTACAAAAACTGTTTGCTATGGTTTCAACTCTTGCCATAGCATCTCATTGTAAGATTCTGTAGCTCGTTTGCCATTCCCATTGCTGTTGTCAATCG

mRNA sequence

TGTAAAGCAAGGGGTGTAAGTTTGTGGGCTAAAGCTCTATGAACCGGTGGTTGAACCGGCCTTTTGAACAAATGTGGAACGTCTCCGATCTCCCCTCGCGCAAAAGCCAAACGCCGCGAACTCAAAACTGGTCTCTCAAATTCGAGCTTGATGAATAACTGAGCTATATTTTGTTGATCTGTCGCAAAATCCATATCGGAGAGGAGCTTCATCTCTACGATTGGACGCTCTCTCTCGCTTTTCGAATTACGAAGAATTACATAATTGACAAAATGAAGAGGCCAATGCCGTGGAATGAACAAGTAGATGTTATATCATCAGGTGAATCTTCTTCCTCTGATTCAGAAACAGGAGTACAAAATGATGGATTCGAGTTCAAGCCTTCCATCGACGATTTCAAAATTCCTGCTAAAGAAATGACAGCTGAAGGTACGTTGATTAAAAGGGCCGAAATGTATCAAGAATACATGAAACAGATCCAGATCCCAGCACAACGTGGTTCTGTAATACCATTTACAACATGGATGGGTTTAGGCAAATCTATAAAGCAGCTTTATGGTCAGCCTTTGCATTACTTGACTAACATTCTACTCAAACAGTGGGATCAATTAAGGTTCGGTAGTGTGGATGAATATAAGCCATTGGATACCGTAATTCATCCTAGTAAAGCTGAAGCAACTGTATGGCTGGTTGAAGAGATTCATAGGCGCACCTCGTCGCATCATCATGTTGCTAAACTGTGGTTATCAGACCCGATGCACGAAGCTTACGTTGACTCCATTTTCCCCCAACTTTGAAAGCTGCTTTCTGTTACGTTCGGGTCTGTGTCGATACTAAAACATATTTCTAGAAGGCTAACATGTTGATGACAATGTGAATTGTAATAGAAACAGCATAGTTCTTCAGTCACATTGCACTTTAATGTGTAGGTTTTTTTATATAATCCCATTGGGTTTCGTTGTATGCTCTTTGTAATATTATAGAGCTTCTTCAAACTTACATCCACGGCTTACATGCAACCATAATGAACAATCTTTGGGGAGATTCCTAGTTGATTCATTGACTGACTCCTCCTGTATGTGCTGCCCTTGTTTCACAGAATCACCATGGCCGCAAGCTGTTAATATGTTTACAAAAACTGTTTGCTATGGTTTCAACTCTTGCCATAGCATCTCATTGTAAGATTCTGTAGCTCGTTTGCCATTCCCATTGCTGTTGTCAATCG

Coding sequence (CDS)

ATGAAGAGGCCAATGCCGTGGAATGAACAAGTAGATGTTATATCATCAGGTGAATCTTCTTCCTCTGATTCAGAAACAGGAGTACAAAATGATGGATTCGAGTTCAAGCCTTCCATCGACGATTTCAAAATTCCTGCTAAAGAAATGACAGCTGAAGGTACGTTGATTAAAAGGGCCGAAATGTATCAAGAATACATGAAACAGATCCAGATCCCAGCACAACGTGGTTCTGTAATACCATTTACAACATGGATGGGTTTAGGCAAATCTATAAAGCAGCTTTATGGTCAGCCTTTGCATTACTTGACTAACATTCTACTCAAACAGTGGGATCAATTAAGGTTCGGTAGTGTGGATGAATATAAGCCATTGGATACCGTAATTCATCCTAGTAAAGCTGAAGCAACTGTATGGCTGGTTGAAGAGATTCATAGGCGCACCTCGTCGCATCATCATGTTGCTAAACTGTGGTTATCAGACCCGATGCACGAAGCTTACGTTGACTCCATTTTCCCCCAACTTTGA

Protein sequence

MKRPMPWNEQVDVISSGESSSSDSETGVQNDGFEFKPSIDDFKIPAKEMTAEGTLIKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
Homology
[Close]
BLAST of Cp4.1LG03g10490 vs. Swiss-Prot
Match: RDM1_ARATH (Protein RDM1 OS=Arabidopsis thaliana GN=RDM1 PE=1 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 3.6e-48
Identity = 90/158 (56.96%), Postives = 121/158 (76.58%), Query Frame = 1 

Query: 16  SGESSSSDSETGVQNDGFEFKPSIDDFKIPAKEMTAEGTLIKRAEMYQEYMKQIQIPAQR 75
           SG+S SSD +  + +DGF             +++  EG+L++RAEMYQ+YMKQ+ IP  R
Sbjct: 12  SGDSGSSDVDAEI-SDGFS------PLDTSHRDVADEGSLLRRAEMYQDYMKQVPIPTNR 71

Query: 76  GSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEA 135
           GS+IPFT+W+GL  S+KQLYGQPLHYLTN+LL++WDQ RFG+  E + LD++IHP+KAEA
Sbjct: 72  GSLIPFTSWVGLSISMKQLYGQPLHYLTNVLLQRWDQSRFGTDSEEQRLDSIIHPTKAEA 131

Query: 136 TVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQ 174
           T+WLVEEIHR T SH H+A LW SDPM+ +++D IFP+
Sbjct: 132 TIWLVEEIHRLTPSHLHMALLWRSDPMYHSFIDPIFPE 162

[Close]
BLAST of Cp4.1LG03g10490 vs. TrEMBL
Match: A0A0A0L8M0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G146430 PE=4 SV=1)

HSP 1 Score: 344.0 bits (881), Expect = 1.1e-91
Identity = 162/174 (93.10%), Postives = 169/174 (97.13%), Query Frame = 1 

Query: 1   MKRPMPWNEQVDVISSGESSSSDSETGVQNDGFEFKPSIDDFKIPAKEMTAEGTLIKRAE 60
           MKRPMPWNEQVD+ISSGESSSSDSE  +QNDG+EFKPS+DDFKIPAKEMT+EG L+KRAE
Sbjct: 1   MKRPMPWNEQVDIISSGESSSSDSEAAIQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAE 60

Query: 61  MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRFGSVDE 120
           MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLR GS DE
Sbjct: 61  MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRLGSADE 120

Query: 121 YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL 175
           YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMH+AYVDSIFPQL
Sbjct: 121 YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHQAYVDSIFPQL 174

[Close]
BLAST of Cp4.1LG03g10490 vs. TrEMBL
Match: M5XES6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010153mg PE=4 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 1.7e-68
Identity = 128/176 (72.73%), Postives = 148/176 (84.09%), Query Frame = 1 

Query: 1   MKRPMPWNEQVDVISSGESSSSDSE--TGVQNDGFEFKPSIDDFKIPAKEMTAEGTLIKR 60
           MKR  PW+EQVDVISS +SSSSD E  T +++D  +   +    + PAKE T+EG L +R
Sbjct: 83  MKRAFPWDEQVDVISSDDSSSSDMEMETNIESDSKQLTNNTTSDQ-PAKERTSEGALTRR 142

Query: 61  AEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRFGSV 120
           AEMYQEYMKQI IPA RGSVIPFT+WMGLGKSIKQLYGQPLHYLTNILLKQWDQLR GS 
Sbjct: 143 AEMYQEYMKQIPIPAHRGSVIPFTSWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRMGSE 202

Query: 121 DEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL 175
           +EY+PLDT+IHP KAEAT+WL+EE+HR TSSH+H+A LWLSDPMH A+VDSIFPQL
Sbjct: 203 EEYRPLDTIIHPCKAEATIWLMEEVHRHTSSHYHIANLWLSDPMHHAFVDSIFPQL 257

[Close]
BLAST of Cp4.1LG03g10490 vs. TrEMBL
Match: W9QYP0_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_009096 PE=4 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 5.1e-65
Identity = 123/185 (66.49%), Postives = 150/185 (81.08%), Query Frame = 1 

Query: 1   MKRPMPWNEQVDVISSGESSSS--------DSETGVQ---NDGFEFKPSIDDFKIPAKEM 60
           M++ +PWNEQVDVISS ESSSS        DS +G Q   ND  + +P+      P K++
Sbjct: 1   MEKGIPWNEQVDVISSDESSSSSDSEIEVRDSHSGKQLLTNDAID-QPTTHVLDQPLKDI 60

Query: 61  TAEGTLIKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQ 120
           T+EGTLIKRAE+YQ+YMKQI IP  RGS+IPFT+WMGLGKSIKQ+YGQPLHYLTN+ LK 
Sbjct: 61  TSEGTLIKRAELYQDYMKQIPIPTHRGSLIPFTSWMGLGKSIKQMYGQPLHYLTNVQLKH 120

Query: 121 WDQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDS 175
           WDQLR GS +E +PLDT++HPSKAEAT+WL+EE+HRRT+SH+H+AKLWL DPMH A+VDS
Sbjct: 121 WDQLRIGSEEEDRPLDTIVHPSKAEATIWLLEEVHRRTTSHYHIAKLWLLDPMHHAFVDS 180

[Close]
BLAST of Cp4.1LG03g10490 vs. TrEMBL
Match: A0A061EN17_THECC (Rna-directed dna methylation 1 isoform 1 OS=Theobroma cacao GN=TCM_020673 PE=4 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 6.7e-65
Identity = 122/176 (69.32%), Postives = 141/176 (80.11%), Query Frame = 1 

Query: 1   MKRPMPWNEQVDVISSGESSSSDSETGVQNDGFEFKPSIDDFKI--PAKEMTAEGTLIKR 60
           MKR +PW+ QVDVI S ESSSS S +   +   +      +  +  P KE+++EG LI+R
Sbjct: 1   MKRALPWSAQVDVILSDESSSSSSSSSSSDSDIQVNNGTTNAAVDQPPKELSSEGLLIRR 60

Query: 61  AEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRFGSV 120
           AEMYQEYMKQ+ IP QRGS+IPFTTWMGLG+SIKQLYGQPLHYLTNILLKQWD LR GS 
Sbjct: 61  AEMYQEYMKQLPIPTQRGSIIPFTTWMGLGRSIKQLYGQPLHYLTNILLKQWDHLRIGSE 120

Query: 121 DEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL 175
           DE+ PLD VIHP KAEATVWLVEE+HR TSSHHH+AKLW SDPMH A+VDSIFP+L
Sbjct: 121 DEHSPLDIVIHPCKAEATVWLVEELHRCTSSHHHMAKLWQSDPMHHAFVDSIFPKL 176

[Close]
BLAST of Cp4.1LG03g10490 vs. TrEMBL
Match: A0A0B0PZ62_GOSAR (Protein RDM1-like protein OS=Gossypium arboreum GN=F383_07886 PE=4 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 1.5e-64
Identity = 120/180 (66.67%), Postives = 147/180 (81.67%), Query Frame = 1 

Query: 1   MKRPMPWNEQVDVISSGESSSSDSETGVQNDGFEFKPSIDD------FKIPAKEMTAEGT 60
           MKR +PW++QVDVISS ESSSS S +   +  F+ +  ++D         P KE++++G 
Sbjct: 1   MKRALPWSDQVDVISSDESSSSSSSSSSYSS-FDVEVQVNDGTKNVAVDQPPKELSSDGL 60

Query: 61  LIKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLR 120
           LI++AE+YQEYMKQ+ IP QRGSVIPFTTWMGLG+SIKQLYGQPLHYLTNILLKQWD  R
Sbjct: 61  LIRKAEIYQEYMKQLPIPTQRGSVIPFTTWMGLGRSIKQLYGQPLHYLTNILLKQWDHSR 120

Query: 121 FGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL 175
            GS DE++PLD ++HP KAEATVWLVEE+HR+TSSHHH+AKLW SDPMH A++DSIFPQL
Sbjct: 121 VGSEDEHRPLDIIVHPCKAEATVWLVEELHRQTSSHHHMAKLWQSDPMHHAFIDSIFPQL 179

[Close]
BLAST of Cp4.1LG03g10490 vs. TAIR10
Match: AT3G22680.1 (AT3G22680.1 RNA-DIRECTED DNA METHYLATION 1)

HSP 1 Score: 192.6 bits (488), Expect = 2.1e-49
Identity = 90/158 (56.96%), Postives = 121/158 (76.58%), Query Frame = 1 

Query: 16  SGESSSSDSETGVQNDGFEFKPSIDDFKIPAKEMTAEGTLIKRAEMYQEYMKQIQIPAQR 75
           SG+S SSD +  + +DGF             +++  EG+L++RAEMYQ+YMKQ+ IP  R
Sbjct: 12  SGDSGSSDVDAEI-SDGFS------PLDTSHRDVADEGSLLRRAEMYQDYMKQVPIPTNR 71

Query: 76  GSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEA 135
           GS+IPFT+W+GL  S+KQLYGQPLHYLTN+LL++WDQ RFG+  E + LD++IHP+KAEA
Sbjct: 72  GSLIPFTSWVGLSISMKQLYGQPLHYLTNVLLQRWDQSRFGTDSEEQRLDSIIHPTKAEA 131

Query: 136 TVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQ 174
           T+WLVEEIHR T SH H+A LW SDPM+ +++D IFP+
Sbjct: 132 TIWLVEEIHRLTPSHLHMALLWRSDPMYHSFIDPIFPE 162

[Close]
BLAST of Cp4.1LG03g10490 vs. NCBI nr
Match: gi|659076365|ref|XP_008438640.1| (PREDICTED: protein RDM1 [Cucumis melo])

HSP 1 Score: 345.9 bits (886), Expect = 4.1e-92
Identity = 165/174 (94.83%), Postives = 169/174 (97.13%), Query Frame = 1 

Query: 1   MKRPMPWNEQVDVISSGESSSSDSETGVQNDGFEFKPSIDDFKIPAKEMTAEGTLIKRAE 60
           MKRPMPWNEQVDVISSGESSSSDSE  VQNDG+EFKPS+DDFKIPAKEMT+EG L+KRAE
Sbjct: 1   MKRPMPWNEQVDVISSGESSSSDSEAAVQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAE 60

Query: 61  MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRFGSVDE 120
           MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLR GS DE
Sbjct: 61  MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRLGSADE 120

Query: 121 YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL 175
           YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
Sbjct: 121 YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL 174

[Close]
BLAST of Cp4.1LG03g10490 vs. NCBI nr
Match: gi|449432680|ref|XP_004134127.1| (PREDICTED: protein RDM1 [Cucumis sativus])

HSP 1 Score: 344.0 bits (881), Expect = 1.6e-91
Identity = 162/174 (93.10%), Postives = 169/174 (97.13%), Query Frame = 1 

Query: 1   MKRPMPWNEQVDVISSGESSSSDSETGVQNDGFEFKPSIDDFKIPAKEMTAEGTLIKRAE 60
           MKRPMPWNEQVD+ISSGESSSSDSE  +QNDG+EFKPS+DDFKIPAKEMT+EG L+KRAE
Sbjct: 1   MKRPMPWNEQVDIISSGESSSSDSEAAIQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAE 60

Query: 61  MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRFGSVDE 120
           MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLR GS DE
Sbjct: 61  MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRLGSADE 120

Query: 121 YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL 175
           YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMH+AYVDSIFPQL
Sbjct: 121 YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHQAYVDSIFPQL 174

[Close]
BLAST of Cp4.1LG03g10490 vs. NCBI nr
Match: gi|645235451|ref|XP_008224276.1| (PREDICTED: protein RDM1 [Prunus mume])

HSP 1 Score: 268.5 bits (685), Expect = 8.3e-69
Identity = 128/176 (72.73%), Postives = 149/176 (84.66%), Query Frame = 1 

Query: 1   MKRPMPWNEQVDVISSGESSSSDSE--TGVQNDGFEFKPSIDDFKIPAKEMTAEGTLIKR 60
           MKR  PW+EQVDVISS +SSSSD E  T +++D  +   +    + PAKE T+EG L++R
Sbjct: 83  MKRAFPWDEQVDVISSDDSSSSDMEMETNIESDSKQLTNNTTSDQ-PAKERTSEGALVRR 142

Query: 61  AEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRFGSV 120
           AEMYQEYMKQI IPA RGSVIPFT+WMGLGKSIKQLYGQPLHYLTNILLKQWDQLR GS 
Sbjct: 143 AEMYQEYMKQIPIPAHRGSVIPFTSWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRMGSE 202

Query: 121 DEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL 175
           +EY+PLDT+IHP KAEAT+WL+EE+HR TSSH+H+A LWLSDPMH A+VDSIFPQL
Sbjct: 203 EEYRPLDTIIHPCKAEATIWLMEEVHRHTSSHYHIANLWLSDPMHHAFVDSIFPQL 257

[Close]
BLAST of Cp4.1LG03g10490 vs. NCBI nr
Match: gi|596187590|ref|XP_007223423.1| (hypothetical protein PRUPE_ppa010153mg [Prunus persica])

HSP 1 Score: 266.9 bits (681), Expect = 2.4e-68
Identity = 128/176 (72.73%), Postives = 148/176 (84.09%), Query Frame = 1 

Query: 1   MKRPMPWNEQVDVISSGESSSSDSE--TGVQNDGFEFKPSIDDFKIPAKEMTAEGTLIKR 60
           MKR  PW+EQVDVISS +SSSSD E  T +++D  +   +    + PAKE T+EG L +R
Sbjct: 83  MKRAFPWDEQVDVISSDDSSSSDMEMETNIESDSKQLTNNTTSDQ-PAKERTSEGALTRR 142

Query: 61  AEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRFGSV 120
           AEMYQEYMKQI IPA RGSVIPFT+WMGLGKSIKQLYGQPLHYLTNILLKQWDQLR GS 
Sbjct: 143 AEMYQEYMKQIPIPAHRGSVIPFTSWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRMGSE 202

Query: 121 DEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL 175
           +EY+PLDT+IHP KAEAT+WL+EE+HR TSSH+H+A LWLSDPMH A+VDSIFPQL
Sbjct: 203 EEYRPLDTIIHPCKAEATIWLMEEVHRHTSSHYHIANLWLSDPMHHAFVDSIFPQL 257

[Close]
BLAST of Cp4.1LG03g10490 vs. NCBI nr
Match: gi|1009141332|ref|XP_015888137.1| (PREDICTED: protein RDM1 [Ziziphus jujuba])

HSP 1 Score: 265.0 bits (676), Expect = 9.2e-68
Identity = 129/178 (72.47%), Postives = 150/178 (84.27%), Query Frame = 1 

Query: 1   MKRPMPWNEQVDVISSG--ESSSSDSETGVQNDGFEFKPSIDDFKI--PAKEMTAEGTLI 60
           MKR +PWNE+VDVISS   ESSS D E  + N+G   K S DD     P  E+T+EG+LI
Sbjct: 1   MKRTVPWNEEVDVISSDSDESSSLDKEVEI-NNGRAVKQSTDDMMADHPTIEITSEGSLI 60

Query: 61  KRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRFG 120
           +RAEMYQEYMK+I IP +RGS+IPF+TWMGLGKSIKQLYGQPLHYLTN+LLKQWDQLRF 
Sbjct: 61  RRAEMYQEYMKRIPIPTRRGSIIPFSTWMGLGKSIKQLYGQPLHYLTNVLLKQWDQLRFN 120

Query: 121 SVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL 175
           S DE++PLDT+IHP KAEATVWL+EE+HR TSSH+H+AKLWLSDPMH A+VDSIFPQL
Sbjct: 121 SEDEHRPLDTIIHPCKAEATVWLIEEVHRCTSSHYHIAKLWLSDPMHHAFVDSIFPQL 177

The following BLAST results are available for this feature:
BLAST of Cp4.1LG03g10490 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RDM1_ARATH3.6e-4856.96Protein RDM1 OS=Arabidopsis thaliana GN=RDM1 PE=1 SV=1[more]
BLAST of Cp4.1LG03g10490 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L8M0_CUCSA1.1e-9193.10Uncharacterized protein OS=Cucumis sativus GN=Csa_3G146430 PE=4 SV=1[more]
M5XES6_PRUPE1.7e-6872.73Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010153mg PE=4 SV=1[more]
W9QYP0_9ROSA5.1e-6566.49Uncharacterized protein OS=Morus notabilis GN=L484_009096 PE=4 SV=1[more]
A0A061EN17_THECC6.7e-6569.32Rna-directed dna methylation 1 isoform 1 OS=Theobroma cacao GN=TCM_020673 PE=4 S... [more]
A0A0B0PZ62_GOSAR1.5e-6466.67Protein RDM1-like protein OS=Gossypium arboreum GN=F383_07886 PE=4 SV=1[more]
BLAST of Cp4.1LG03g10490 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G22680.12.1e-4956.96 RNA-DIRECTED DNA METHYLATION 1[more]
BLAST of Cp4.1LG03g10490 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659076365|ref|XP_008438640.1|4.1e-9294.83PREDICTED: protein RDM1 [Cucumis melo][more]
gi|449432680|ref|XP_004134127.1|1.6e-9193.10PREDICTED: protein RDM1 [Cucumis sativus][more]
gi|645235451|ref|XP_008224276.1|8.3e-6972.73PREDICTED: protein RDM1 [Prunus mume][more]
gi|596187590|ref|XP_007223423.1|2.4e-6872.73hypothetical protein PRUPE_ppa010153mg [Prunus persica][more]
gi|1009141332|ref|XP_015888137.1|9.2e-6872.47PREDICTED: protein RDM1 [Ziziphus jujuba][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0044030regulation of DNA methylation
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR015270RDM1
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0070918 production of small RNA involved in gene silencing by RNA
biological_process GO:0044030 regulation of DNA methylation
cellular_component GO:0000419 DNA-directed RNA polymerase V complex
cellular_component GO:0005634 nucleus
molecular_function GO:0043621 protein self-association
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG03g10490.1Cp4.1LG03g10490.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015270Protein RDM1PFAMPF09187DUF1950coord: 55..173
score: 9.6
IPR015270Protein RDM1unknownSSF109920Hypothetical protein At3g22680coord: 53..173
score: 5.23
NoneNo IPR availablePANTHERPTHR36366FAMILY NOT NAMEDcoord: 2..174
score: 2.0
NoneNo IPR availablePANTHERPTHR36366:SF1PROTEIN RDM1coord: 2..174
score: 2.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG03g10490Cucsa.254500Cucumber (Gy14) v1cgycpeB0682
Cp4.1LG03g10490CmaCh00G003620Cucurbita maxima (Rimu)cmacpeB001
Cp4.1LG03g10490CmaCh14G017300Cucurbita maxima (Rimu)cmacpeB283
Cp4.1LG03g10490CmaCh06G013920Cucurbita maxima (Rimu)cmacpeB837
Cp4.1LG03g10490CmoCh06G013970Cucurbita moschata (Rifu)cmocpeB787
Cp4.1LG03g10490CmoCh14G017690Cucurbita moschata (Rifu)cmocpeB245
Cp4.1LG03g10490Cla021604Watermelon (97103) v1cpewmB613
Cp4.1LG03g10490Csa3G146430Cucumber (Chinese Long) v2cpecuB609
Cp4.1LG03g10490MELO3C006513Melon (DHL92) v3.5.1cpemeB585
Cp4.1LG03g10490ClCG05G004990Watermelon (Charleston Gray)cpewcgB559
Cp4.1LG03g10490CSPI03G12920Wild cucumber (PI 183967)cpecpiB611
Cp4.1LG03g10490Lsi05G016240Bottle gourd (USVL1VR-Ls)cpelsiB506
Cp4.1LG03g10490MELO3C006513.2Melon (DHL92) v3.6.1cpemedB693
Cp4.1LG03g10490CsaV3_3G013040Cucumber (Chinese Long) v3cpecucB0759
Cp4.1LG03g10490Bhi01G000563Wax gourdcpewgoB0783
Cp4.1LG03g10490CsGy3G013060Cucumber (Gy14) v2cgybcpeB406
Cp4.1LG03g10490Carg06156Silver-seed gourdcarcpeB1331
Cp4.1LG03g10490Carg23502Silver-seed gourdcarcpeB1183
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG03g10490Cp4.1LG08g04150Cucurbita pepo (Zucchini)cpecpeB482
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG03g10490Cucurbita pepo (Zucchini)cpecpeB183
Cp4.1LG03g10490Cucurbita pepo (Zucchini)cpecpeB184
Cp4.1LG03g10490Cucurbita pepo (Zucchini)cpecpeB266
Cp4.1LG03g10490Cucurbita pepo (Zucchini)cpecpeB333
Cp4.1LG03g10490Cucurbita pepo (Zucchini)cpecpeB478
Cp4.1LG03g10490Cucurbita maxima (Rimu)cmacpeB401
Cp4.1LG03g10490Cucurbita maxima (Rimu)cmacpeB402
Cp4.1LG03g10490Cucurbita maxima (Rimu)cmacpeB536
Cp4.1LG03g10490Cucurbita maxima (Rimu)cmacpeB640
Cp4.1LG03g10490Cucurbita maxima (Rimu)cmacpeB928
Cp4.1LG03g10490Cucurbita moschata (Rifu)cmocpeB363
Cp4.1LG03g10490Cucurbita moschata (Rifu)cmocpeB364
Cp4.1LG03g10490Cucurbita moschata (Rifu)cmocpeB590
Cp4.1LG03g10490Cucurbita moschata (Rifu)cmocpeB862
Cp4.1LG03g10490Cucumber (Chinese Long) v2cpecuB596
Cp4.1LG03g10490Bottle gourd (USVL1VR-Ls)cpelsiB498
Cp4.1LG03g10490Bottle gourd (USVL1VR-Ls)cpelsiB484
Cp4.1LG03g10490Bottle gourd (USVL1VR-Ls)cpelsiB510
Cp4.1LG03g10490Watermelon (Charleston Gray)cpewcgB539
Cp4.1LG03g10490Watermelon (Charleston Gray)cpewcgB561
Cp4.1LG03g10490Watermelon (Charleston Gray)cpewcgB570
Cp4.1LG03g10490Watermelon (97103) v1cpewmB590
Cp4.1LG03g10490Watermelon (97103) v1cpewmB605
Cp4.1LG03g10490Watermelon (97103) v1cpewmB622
Cp4.1LG03g10490Silver-seed gourdcarcpeB0327
Cp4.1LG03g10490Melon (DHL92) v3.5.1cpemeB579
Cp4.1LG03g10490Cucumber (Gy14) v2cgybcpeB231
Cp4.1LG03g10490Cucumber (Gy14) v2cgybcpeB959
Cp4.1LG03g10490Melon (DHL92) v3.6.1cpemedB666
Cp4.1LG03g10490Melon (DHL92) v3.6.1cpemedB686
Cp4.1LG03g10490Silver-seed gourdcarcpeB0163
Cp4.1LG03g10490Silver-seed gourdcarcpeB0454
Cp4.1LG03g10490Silver-seed gourdcarcpeB1061
Cp4.1LG03g10490Silver-seed gourdcarcpeB1098
Cp4.1LG03g10490Cucumber (Chinese Long) v3cpecucB0745
Cp4.1LG03g10490Cucumber (Chinese Long) v3cpecucB0746
Cp4.1LG03g10490Cucumber (Chinese Long) v3cpecucB0791
Cp4.1LG03g10490Cucumber (Chinese Long) v3cpecucB0795
Cp4.1LG03g10490Wax gourdcpewgoB0764
Cp4.1LG03g10490Wax gourdcpewgoB0800
Cp4.1LG03g10490Wax gourdcpewgoB0820