CmaCh00G003620 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh00G003620
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	RNA-directed DNA methylation protein
Location	Cma_Chr00 : 29939380 .. 29942182 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGATACTCCGTAAGCCATTCCATCCAAAGCTTCTGCAACGTTTTCCAAAATTCGAGCTCGTTGGATTCGTTACTGAGCTCGGCTGATTATCCGTGGTGAAACCCAGATAACAGAAGAGTTTCGGCTTTACGATTCGAAGCTCTCCCTCTTTTCTCAAAATACGAAGGTACCTCATGATCACTCTGACTTCCCATTTATCCATTACCCTCTCTGTTCTTCCATTTTGTTTGTTTGAGATGTCAATTCTTATTGGATATCATCCTGTGTGTGGATTTTCCAGAATGTTGCTTCATTGTTTGATGCAGTGTCGTAATAGAATTTCATTAGTTCTTAGAGATTGCCCTAGATATTGATGGCTATTGAGTGTAGTAATAATCTGAGCTTGTTCCTTGGCAGAAACTGAGTGCATTGCTTCATAGTTGCATGTGCGAGGTGTTCTTTGGGAATGGGAATGTGTGATAGTAAGATAGTGATGGCCCAATGGGGTGATTAGTTCCAATTCCGTGATTAAGTTTTGTTATGAACATGAGATTGAAACTTTAAAGCTGTTATTTATTAGTAACCACGATATTTTTTCTCCAGAGTTCCATTCTTTATAAAATGAAGAGGCCAATGCCATGGAATGAACAGGTAGATGTTATCTCATCAGGTGAATCTTCTTCCTCTGATTCAGAAATAGGAGGACAAAATGATGGATTTGAGTTCAAGCCCTCCATTGATGACTTCAAAATTCCTGCAAAGGAGATGACATCTGAAGGTAATTTGATCTTTGTCTTTGTTACACCAACAGTTTGAAGTACTTCGTGAGATAAATTTAGAGTTTCTATATATAAATTTTCACATCCATAAGCTTTGGAAAAGAGGATCTTCTGTGAAATGTCATCTAATGATATGCAGACATGTTGATTAAAAGGGCAGAAATGTATCAAGAATACATGAAACAGATCCCGATCCCGGCATACCGTGGATCTGTTATACCATTTACAACATGGATGGGACTAGGCAAATCTATAAAGCAGCTATATGGACAGCCTTTGCATTACCTGACTAACATTCAACTCAAACAGTGGGATCAATTAAGGTTCGGAAGTGTGGATGAATATAAGCCATTGGATACCATAATTCATCCGAGTAAAGCTGAAGCAACTGTATGGCTGGTTGAAGAGATTCATCGGCGCACCTCGTCACATCATCATGTTGCTAAGCTCTGGTTATCGGACTCAATGCACGAAGTGTATGTTGACTCCATTTTCCCCCAACTATGAAAGCTGCTGCTCTCAGTTAAGTTCTGATCTATGCTGATATTATAACATATTTCTAGAAGACTAACTTGCGTTGACTATGTGAATTGTAATAGAAACAACATAGTTCTTTAGTCACACTGCTCTTGAATGTGCAGGTTTCTTATCAACTGACATAGAACATGCTCTAGCATTGCCTCTTCTGTCCATTGTTGTGTCTGTCTGTGAAGTAGTTGATTGCATTTACTTTTGTAGCTTACAGATAGAAAAGCACTCTTAAGTTTCACAGAGATCGAATGTAAATCAATAGTGAAGATGCATATTTTCTTTTACAATTCTTTCCTATCTGAGAATTCTGTTACCAATAATCACCACATGAACACAACCCTTGTCGAAAGAAGTGAAACCTATTATTATCTCGTATTGTTATTTCCCTATCATAAACTTTTGAAACGTATTTGGCAAATGCATGACAGTCTGAGCACGTTCGGAGATTCTTGATGACACGAATAGGCAGGTGCTTTTTTGTACTTATAAGCCCGTAAGCCATCGCCAGCTTCTCGCTATGCTGATTGAGTAGATAATGTTTCTCCTGTTCATTTACATCAAGCAGAACATTGGTTAAATCAGGAACATAGCCAGCATCCCCAAGCCTGTTGGTGATTTCTTTCAACATCATGTCAATGTGACAAGTTTCTGGGTGTGATCTGTCGCCCGAGGTAAATTCATGAATAACTCCATCGACTTCGATTGAGCTTGAACCAGGCATTTTTCTAACTCCTTTCTCCTTCAAATGTAGCCTCACATTAGCAACATCAGCCCACTGTTCAGCCGACGCATATATGTTTGATAGAAGCACGTGAATCCCAGACCTTTCTGGAGCCGTTTCTGCCAACCTTTCAGCTGCAAATGTAGCCAGTTCGACGTTTTTATGAGTACGACATGCAGCCAATAGAGATCCCCAGATAATTCCATTGGGTTTCATTGACATGCTCTTTATAATGTCAAGAGCTTCTTCTAGCTTACCTGCACGGCCTAATAGATCGACCATGCAACCATAATGAACAATCTGTGGGGAGATTCCATGTTGCTTCATTGACTCGAATATGAGCTGCCCTTGTTCCACAAAACCACCATGGCTACAAGCTGTTAATATGTTTACAAAAACTACTTGATCAGGTTTCACCCCTTGTCTTAGCATCTCACTATAAAGTTCTATAGCTCTCTCTCCATTCCCATCCACAGCCATTGCTCCAATGGCTGCTGTCCATGCCGAGACGTCTTTTCTATCCATATTGTCGAACACTTTCATCGCACTACGAGAGTCACCACACCTAGCAAACATATCGACTAAGGCTGTCTCAAGCAACATATCACAGTCGATATTGTTCTTTATGATATATGCATATATCCATTTGGCGAGTTCGAGAGCTCCTAGATATCCACATGCAGATGCAACTTCTACCATCGTCACCCTGTCTGCTTCTATTTCCTTTGTTTGCATTTCTCGAAAGAGTTCAATTGCCTCCTCGAACATACTCTCTTGAACCAAAGCACTAACC

mRNA sequence

TGATACTCCGTAAGCCATTCCATCCAAAGCTTCTGCAACGTTTTCCAAAATTCGAGCTCGTTGGATTCGTTACTGAGCTCGGCTGATTATCCGTGGTGAAACCCAGATAACAGAAGAGTTTCGGCTTTACGATTCGAAGCTCTCCCTCTTTTCTCAAAATACGAAGAGTTCCATTCTTTATAAAATGAAGAGGCCAATGCCATGGAATGAACAGGTAGATGTTATCTCATCAGGTGAATCTTCTTCCTCTGATTCAGAAATAGGAGGACAAAATGATGGATTTGAGTTCAAGCCCTCCATTGATGACTTCAAAATTCCTGCAAAGGAGATGACATCTGAAGACATGTTGATTAAAAGGGCAGAAATGTATCAAGAATACATGAAACAGATCCCGATCCCGGCATACCGTGGATCTGTTATACCATTTACAACATGGATGGGACTAGGCAAATCTATAAAGCAGCTATATGGACAGCCTTTGCATTACCTGACTAACATTCAACTCAAACAGTGGGATCAATTAAGGTTCGGAAGTGTGGATGAATATAAGCCATTGGATACCATAATTCATCCGAGTAAAGCTGAAGCAACTGTATGGCTGGTTGAAGAGATTCATCGGCGCACCTCGTCACATCATCATGTTGCTAAGCTCTGGTTATCGGACTCAATGCACGAAGTGTATGTTGACTCCATTTTCCCCCAACTATGAAAGCTGCTGCTCTCATCTGAGCACGTTCGGAGATTCTTGATGACACGAATAGGCAGGTGCTTTTTTGTACTTATAAGCCCGTAAGCCATCGCCAGCTTCTCGCTATGCTGATTGAGTAGATAATGTTTCTCCTGTTCATTTACATCAAGCAGAACATTGGTTAAATCAGGAACATAGCCAGCATCCCCAAGCCTGTTGGTGATTTCTTTCAACATCATGTCAATGTGACAAGTTTCTGGGTGTGATCTGTCGCCCGAGCCTCACATTAGCAACATCAGCCCACTGTTCAGCCGACGCATATATGTTTGATAGAAGCACGTGAATCCCAGACCTTTCTGGAGCCGTTTCTGCCAACCTTTCAGCTGCAAATGTAGCCAGTTCGACGTTTTTATGAGTACGACATGCAGCCAATAGAGATCCCCAGATAATTCCATTGGGTTTCATTGACATGCTCTTTATAATGTCAAGAGCTTCTTCTAGCTTACCTGCACGGCCTAATAGATCGACCATGCAACCATAATGAACAATCTGTGGGGAGATTCCATGTTGCTTCATTGACTCGAATATGAGCTGCCCTTGTTCCACAAAACCACCATGGCTACAAGCTGTTAATATGTTTACAAAAACTACTTGATCAGGTTTCACCCCTTGTCTTAGCATCTCACTATAAAGTTCTATAGCTCTCTCTCCATTCCCATCCACAGCCATTGCTCCAATGGCTGCTGTCCATGCCGAGACGTCTTTTCTATCCATATTGTCGAACACTTTCATCGCACTACGAGAGTCACCACACCTAGCAAACATATCGACTAAGGCTGTCTCAAGCAACATATCACAGTCGATATTGTTCTTTATGATATATGCATATATCCATTTGGCGAGTTCGAGAGCTCCTAGATATCCACATGCAGATGCAACTTCTACCATCGTCACCCTGTCTGCTTCTATTTCCTTTGTTTGCATTTCTCGAAAGAGTTCAATTGCCTCCTCGAACATACTCTCTTGAACCAAAGCACTAACC

Coding sequence (CDS)

ATGAAGAGGCCAATGCCATGGAATGAACAGGTAGATGTTATCTCATCAGGTGAATCTTCTTCCTCTGATTCAGAAATAGGAGGACAAAATGATGGATTTGAGTTCAAGCCCTCCATTGATGACTTCAAAATTCCTGCAAAGGAGATGACATCTGAAGACATGTTGATTAAAAGGGCAGAAATGTATCAAGAATACATGAAACAGATCCCGATCCCGGCATACCGTGGATCTGTTATACCATTTACAACATGGATGGGACTAGGCAAATCTATAAAGCAGCTATATGGACAGCCTTTGCATTACCTGACTAACATTCAACTCAAACAGTGGGATCAATTAAGGTTCGGAAGTGTGGATGAATATAAGCCATTGGATACCATAATTCATCCGAGTAAAGCTGAAGCAACTGTATGGCTGGTTGAAGAGATTCATCGGCGCACCTCGTCACATCATCATGTTGCTAAGCTCTGGTTATCGGACTCAATGCACGAAGTGTATGTTGACTCCATTTTCCCCCAACTATGA

Protein sequence

MKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDDFKIPAKEMTSEDMLIKRAEMYQEYMKQIPIPAYRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNIQLKQWDQLRFGSVDEYKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQL

Homology

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BLAST of CmaCh00G003620 vs. Swiss-Prot
Match: RDM1_ARATH (Protein RDM1 OS=Arabidopsis thaliana GN=RDM1 PE=1 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 2.2e-45
Identity = 87/158 (55.06%), Postives = 113/158 (71.52%), Query Frame = 1


Query: 16  SGESSSSDSEIGGQNDGFEFKPSIDDFKIPAKEMTSEDMLIKRAEMYQEYMKQIPIPAYR 75
           SG+S SSD +        E            +++  E  L++RAEMYQ+YMKQ+PIP  R
Sbjct: 12  SGDSGSSDVDA-------EISDGFSPLDTSHRDVADEGSLLRRAEMYQDYMKQVPIPTNR 71

Query: 76  GSVIPFTTWMGLGKSIKQLYGQPLHYLTNIQLKQWDQLRFGSVDEYKPLDTIIHPSKAEA 135
           GS+IPFT+W+GL  S+KQLYGQPLHYLTN+ L++WDQ RFG+  E + LD+IIHP+KAEA
Sbjct: 72  GSLIPFTSWVGLSISMKQLYGQPLHYLTNVLLQRWDQSRFGTDSEEQRLDSIIHPTKAEA 131

Query: 136 TVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQ 174
           T+WLVEEIHR T SH H+A LW SD M+  ++D IFP+
Sbjct: 132 TIWLVEEIHRLTPSHLHMALLWRSDPMYHSFIDPIFPE 162

[Close]

BLAST of CmaCh00G003620 vs. TrEMBL
Match: A0A0A0L8M0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G146430 PE=4 SV=1)

HSP 1 Score: 328.6 bits (841), Expect = 4.7e-87
Identity = 157/174 (90.23%), Postives = 163/174 (93.68%), Query Frame = 1


Query: 1   MKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDDFKIPAKEMTSEDMLIKRAE 60
           MKRPMPWNEQVD+ISSGESSSSDSE   QNDG+EFKPS+DDFKIPAKEMTSE ML+KRAE
Sbjct: 1   MKRPMPWNEQVDIISSGESSSSDSEAAIQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAE 60

Query: 61  MYQEYMKQIPIPAYRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNIQLKQWDQLRFGSVDE 120
           MYQEYMKQI IPA RGSVIPFTTWMGLGKSIKQLYGQPLHYLTNI LKQWDQLR GS DE
Sbjct: 61  MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRLGSADE 120

Query: 121 YKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQL 175
           YKPLDT+IHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSD MH+ YVDSIFPQL
Sbjct: 121 YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHQAYVDSIFPQL 174

[Close]

BLAST of CmaCh00G003620 vs. TrEMBL
Match: M5XES6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010153mg PE=4 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 1.8e-65
Identity = 126/176 (71.59%), Postives = 145/176 (82.39%), Query Frame = 1


Query: 1   MKRPMPWNEQVDVISSGESSSSDSEIGG--QNDGFEFKPSIDDFKIPAKEMTSEDMLIKR 60
           MKR  PW+EQVDVISS +SSSSD E+    ++D  +   +    + PAKE TSE  L +R
Sbjct: 83  MKRAFPWDEQVDVISSDDSSSSDMEMETNIESDSKQLTNNTTSDQ-PAKERTSEGALTRR 142

Query: 61  AEMYQEYMKQIPIPAYRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNIQLKQWDQLRFGSV 120
           AEMYQEYMKQIPIPA+RGSVIPFT+WMGLGKSIKQLYGQPLHYLTNI LKQWDQLR GS 
Sbjct: 143 AEMYQEYMKQIPIPAHRGSVIPFTSWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRMGSE 202

Query: 121 DEYKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQL 175
           +EY+PLDTIIHP KAEAT+WL+EE+HR TSSH+H+A LWLSD MH  +VDSIFPQL
Sbjct: 203 EEYRPLDTIIHPCKAEATIWLMEEVHRHTSSHYHIANLWLSDPMHHAFVDSIFPQL 257

[Close]

BLAST of CmaCh00G003620 vs. TrEMBL
Match: W9QYP0_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_009096 PE=4 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 7.4e-64
Identity = 125/185 (67.57%), Postives = 150/185 (81.08%), Query Frame = 1


Query: 1   MKRPMPWNEQVDVISSGESSSS-DSEI-------GGQ---NDGFEFKPSIDDFKIPAKEM 60
           M++ +PWNEQVDVISS ESSSS DSEI       G Q   ND  + +P+      P K++
Sbjct: 1   MEKGIPWNEQVDVISSDESSSSSDSEIEVRDSHSGKQLLTNDAID-QPTTHVLDQPLKDI 60

Query: 61  TSEDMLIKRAEMYQEYMKQIPIPAYRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNIQLKQ 120
           TSE  LIKRAE+YQ+YMKQIPIP +RGS+IPFT+WMGLGKSIKQ+YGQPLHYLTN+QLK 
Sbjct: 61  TSEGTLIKRAELYQDYMKQIPIPTHRGSLIPFTSWMGLGKSIKQMYGQPLHYLTNVQLKH 120

Query: 121 WDQLRFGSVDEYKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDS 175
           WDQLR GS +E +PLDTI+HPSKAEAT+WL+EE+HRRT+SH+H+AKLWL D MH  +VDS
Sbjct: 121 WDQLRIGSEEEDRPLDTIVHPSKAEATIWLLEEVHRRTTSHYHIAKLWLLDPMHHAFVDS 180

[Close]

BLAST of CmaCh00G003620 vs. TrEMBL
Match: A0A067KVT3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02210 PE=4 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 1.1e-62
Identity = 122/176 (69.32%), Postives = 143/176 (81.25%), Query Frame = 1


Query: 1   MKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDDFKI--PAKEMTSEDMLIKR 60
           MKR MPW+EQ+DVISS ESSSSD +I   NDG + +    +  +    KE++SE +L +R
Sbjct: 1   MKRSMPWSEQIDVISSDESSSSDGDIE-TNDGVDPQQLSLNVSLGETTKEISSEGVLTRR 60

Query: 61  AEMYQEYMKQIPIPAYRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNIQLKQWDQLRFGSV 120
           AEMYQEYM+Q+PIP + GSVIPF++W+GLGKSIKQLYGQPLHYLTNI LKQWD LR GS 
Sbjct: 61  AEMYQEYMRQLPIPPHHGSVIPFSSWVGLGKSIKQLYGQPLHYLTNILLKQWDYLRIGSE 120

Query: 121 DEYKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQL 175
           DE + LDT+IHP KAEAT+WLVEEIHRRTSSHHHVAKLWL D MH  +VDSIFPQL
Sbjct: 121 DEQRALDTMIHPCKAEATIWLVEEIHRRTSSHHHVAKLWLLDPMHHTFVDSIFPQL 175

[Close]

BLAST of CmaCh00G003620 vs. TrEMBL
Match: A0A0D2VN17_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G165600 PE=4 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 2.4e-62
Identity = 118/180 (65.56%), Postives = 143/180 (79.44%), Query Frame = 1


Query: 1   MKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDD------FKIPAKEMTSEDM 60
           MKR +PW++QVDVISS ESSSS S     +  F+ +  ++D         P KE++S+ +
Sbjct: 24  MKRALPWSDQVDVISSDESSSSSSSSSSYSS-FDVEVQVNDETKNVAVDQPPKELSSDGL 83

Query: 61  LIKRAEMYQEYMKQIPIPAYRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNIQLKQWDQLR 120
           LI++AE+YQEYMKQ+PIP  RGSVIPFTTWMGLG+SIKQLYGQPLHYLTNI LKQWD  R
Sbjct: 84  LIRKAEIYQEYMKQLPIPTQRGSVIPFTTWMGLGRSIKQLYGQPLHYLTNILLKQWDHSR 143

Query: 121 FGSVDEYKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQL 175
            GS DE++PLD I+HP KAEATVWLVEE+HR+TSSHHH+AKLW SD MH  ++DSIFPQL
Sbjct: 144 VGSEDEHRPLDIIVHPCKAEATVWLVEELHRQTSSHHHMAKLWQSDPMHHAFIDSIFPQL 202

[Close]

BLAST of CmaCh00G003620 vs. TAIR10
Match: AT3G22680.1 (AT3G22680.1 RNA-DIRECTED DNA METHYLATION 1)

HSP 1 Score: 183.3 bits (464), Expect = 1.2e-46
Identity = 87/158 (55.06%), Postives = 113/158 (71.52%), Query Frame = 1


Query: 16  SGESSSSDSEIGGQNDGFEFKPSIDDFKIPAKEMTSEDMLIKRAEMYQEYMKQIPIPAYR 75
           SG+S SSD +        E            +++  E  L++RAEMYQ+YMKQ+PIP  R
Sbjct: 12  SGDSGSSDVDA-------EISDGFSPLDTSHRDVADEGSLLRRAEMYQDYMKQVPIPTNR 71

Query: 76  GSVIPFTTWMGLGKSIKQLYGQPLHYLTNIQLKQWDQLRFGSVDEYKPLDTIIHPSKAEA 135
           GS+IPFT+W+GL  S+KQLYGQPLHYLTN+ L++WDQ RFG+  E + LD+IIHP+KAEA
Sbjct: 72  GSLIPFTSWVGLSISMKQLYGQPLHYLTNVLLQRWDQSRFGTDSEEQRLDSIIHPTKAEA 131

Query: 136 TVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQ 174
           T+WLVEEIHR T SH H+A LW SD M+  ++D IFP+
Sbjct: 132 TIWLVEEIHRLTPSHLHMALLWRSDPMYHSFIDPIFPE 162

[Close]

BLAST of CmaCh00G003620 vs. NCBI nr
Match: gi|659076365|ref|XP_008438640.1| (PREDICTED: protein RDM1 [Cucumis melo])

HSP 1 Score: 330.5 bits (846), Expect = 1.8e-87
Identity = 159/174 (91.38%), Postives = 163/174 (93.68%), Query Frame = 1


Query: 1   MKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDDFKIPAKEMTSEDMLIKRAE 60
           MKRPMPWNEQVDVISSGESSSSDSE   QNDG+EFKPS+DDFKIPAKEMTSE ML+KRAE
Sbjct: 1   MKRPMPWNEQVDVISSGESSSSDSEAAVQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAE 60

Query: 61  MYQEYMKQIPIPAYRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNIQLKQWDQLRFGSVDE 120
           MYQEYMKQI IPA RGSVIPFTTWMGLGKSIKQLYGQPLHYLTNI LKQWDQLR GS DE
Sbjct: 61  MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRLGSADE 120

Query: 121 YKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQL 175
           YKPLDT+IHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSD MHE YVDSIFPQL
Sbjct: 121 YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL 174

[Close]

BLAST of CmaCh00G003620 vs. NCBI nr
Match: gi|449432680|ref|XP_004134127.1| (PREDICTED: protein RDM1 [Cucumis sativus])

HSP 1 Score: 328.6 bits (841), Expect = 6.8e-87
Identity = 157/174 (90.23%), Postives = 163/174 (93.68%), Query Frame = 1


Query: 1   MKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDDFKIPAKEMTSEDMLIKRAE 60
           MKRPMPWNEQVD+ISSGESSSSDSE   QNDG+EFKPS+DDFKIPAKEMTSE ML+KRAE
Sbjct: 1   MKRPMPWNEQVDIISSGESSSSDSEAAIQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAE 60

Query: 61  MYQEYMKQIPIPAYRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNIQLKQWDQLRFGSVDE 120
           MYQEYMKQI IPA RGSVIPFTTWMGLGKSIKQLYGQPLHYLTNI LKQWDQLR GS DE
Sbjct: 61  MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRLGSADE 120

Query: 121 YKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQL 175
           YKPLDT+IHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSD MH+ YVDSIFPQL
Sbjct: 121 YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHQAYVDSIFPQL 174

[Close]

BLAST of CmaCh00G003620 vs. NCBI nr
Match: gi|645235451|ref|XP_008224276.1| (PREDICTED: protein RDM1 [Prunus mume])

HSP 1 Score: 258.5 bits (659), Expect = 8.6e-66
Identity = 126/176 (71.59%), Postives = 146/176 (82.95%), Query Frame = 1


Query: 1   MKRPMPWNEQVDVISSGESSSSDSEIGG--QNDGFEFKPSIDDFKIPAKEMTSEDMLIKR 60
           MKR  PW+EQVDVISS +SSSSD E+    ++D  +   +    + PAKE TSE  L++R
Sbjct: 83  MKRAFPWDEQVDVISSDDSSSSDMEMETNIESDSKQLTNNTTSDQ-PAKERTSEGALVRR 142

Query: 61  AEMYQEYMKQIPIPAYRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNIQLKQWDQLRFGSV 120
           AEMYQEYMKQIPIPA+RGSVIPFT+WMGLGKSIKQLYGQPLHYLTNI LKQWDQLR GS 
Sbjct: 143 AEMYQEYMKQIPIPAHRGSVIPFTSWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRMGSE 202

Query: 121 DEYKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQL 175
           +EY+PLDTIIHP KAEAT+WL+EE+HR TSSH+H+A LWLSD MH  +VDSIFPQL
Sbjct: 203 EEYRPLDTIIHPCKAEATIWLMEEVHRHTSSHYHIANLWLSDPMHHAFVDSIFPQL 257

[Close]

BLAST of CmaCh00G003620 vs. NCBI nr
Match: gi|596187590|ref|XP_007223423.1| (hypothetical protein PRUPE_ppa010153mg [Prunus persica])

HSP 1 Score: 256.9 bits (655), Expect = 2.5e-65
Identity = 126/176 (71.59%), Postives = 145/176 (82.39%), Query Frame = 1


Query: 1   MKRPMPWNEQVDVISSGESSSSDSEIGG--QNDGFEFKPSIDDFKIPAKEMTSEDMLIKR 60
           MKR  PW+EQVDVISS +SSSSD E+    ++D  +   +    + PAKE TSE  L +R
Sbjct: 83  MKRAFPWDEQVDVISSDDSSSSDMEMETNIESDSKQLTNNTTSDQ-PAKERTSEGALTRR 142

Query: 61  AEMYQEYMKQIPIPAYRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNIQLKQWDQLRFGSV 120
           AEMYQEYMKQIPIPA+RGSVIPFT+WMGLGKSIKQLYGQPLHYLTNI LKQWDQLR GS 
Sbjct: 143 AEMYQEYMKQIPIPAHRGSVIPFTSWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRMGSE 202

Query: 121 DEYKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQL 175
           +EY+PLDTIIHP KAEAT+WL+EE+HR TSSH+H+A LWLSD MH  +VDSIFPQL
Sbjct: 203 EEYRPLDTIIHPCKAEATIWLMEEVHRHTSSHYHIANLWLSDPMHHAFVDSIFPQL 257

[Close]

BLAST of CmaCh00G003620 vs. NCBI nr
Match: gi|1009141332|ref|XP_015888137.1| (PREDICTED: protein RDM1 [Ziziphus jujuba])

HSP 1 Score: 256.1 bits (653), Expect = 4.3e-65
Identity = 128/178 (71.91%), Postives = 145/178 (81.46%), Query Frame = 1


Query: 1   MKRPMPWNEQVDVISSG--ESSSSDSEIGGQNDGFEFKPSIDDFKI--PAKEMTSEDMLI 60
           MKR +PWNE+VDVISS   ESSS D E+   N+G   K S DD     P  E+TSE  LI
Sbjct: 1   MKRTVPWNEEVDVISSDSDESSSLDKEVE-INNGRAVKQSTDDMMADHPTIEITSEGSLI 60

Query: 61  KRAEMYQEYMKQIPIPAYRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNIQLKQWDQLRFG 120
           +RAEMYQEYMK+IPIP  RGS+IPF+TWMGLGKSIKQLYGQPLHYLTN+ LKQWDQLRF 
Sbjct: 61  RRAEMYQEYMKRIPIPTRRGSIIPFSTWMGLGKSIKQLYGQPLHYLTNVLLKQWDQLRFN 120

Query: 121 SVDEYKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQL 175
           S DE++PLDTIIHP KAEATVWL+EE+HR TSSH+H+AKLWLSD MH  +VDSIFPQL
Sbjct: 121 SEDEHRPLDTIIHPCKAEATVWLIEEVHRCTSSHYHIAKLWLSDPMHHAFVDSIFPQL 177

The following BLAST results are available for this feature:

BLAST of CmaCh00G003620 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RDM1_ARATH	2.2e-45	55.06	Protein RDM1 OS=Arabidopsis thaliana GN=RDM1 PE=1 SV=1	[more]

BLAST of CmaCh00G003620 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L8M0_CUCSA	4.7e-87	90.23	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G146430 PE=4 SV=1	[more]
M5XES6_PRUPE	1.8e-65	71.59	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010153mg PE=4 SV=1	[more]
W9QYP0_9ROSA	7.4e-64	67.57	Uncharacterized protein OS=Morus notabilis GN=L484_009096 PE=4 SV=1	[more]
A0A067KVT3_JATCU	1.1e-62	69.32	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02210 PE=4 SV=1	[more]
A0A0D2VN17_GOSRA	2.4e-62	65.56	Uncharacterized protein OS=Gossypium raimondii GN=B456_011G165600 PE=4 SV=1	[more]

BLAST of CmaCh00G003620 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G22680.1	1.2e-46	55.06	RNA-DIRECTED DNA METHYLATION 1	[more]

BLAST of CmaCh00G003620 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659076365\|ref\|XP_008438640.1\|	1.8e-87	91.38	PREDICTED: protein RDM1 [Cucumis melo]	[more]
gi\|449432680\|ref\|XP_004134127.1\|	6.8e-87	90.23	PREDICTED: protein RDM1 [Cucumis sativus]	[more]
gi\|645235451\|ref\|XP_008224276.1\|	8.6e-66	71.59	PREDICTED: protein RDM1 [Prunus mume]	[more]
gi\|596187590\|ref\|XP_007223423.1\|	2.5e-65	71.59	hypothetical protein PRUPE_ppa010153mg [Prunus persica]	[more]
gi\|1009141332\|ref\|XP_015888137.1\|	4.3e-65	71.91	PREDICTED: protein RDM1 [Ziziphus jujuba]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0070918	production of small RNA involved in gene silencing by RNA
biological_process	GO:0044030	regulation of DNA methylation
cellular_component	GO:0000419	DNA-directed RNA polymerase V complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0043621	protein self-association
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh00G003620.1	CmaCh00G003620.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh00G003620	Cucsa.254500	Cucumber (Gy14) v1	cgycmaB0702
CmaCh00G003620	Cla021604	Watermelon (97103) v1	cmawmB007
CmaCh00G003620	Csa3G146430	Cucumber (Chinese Long) v2	cmacuB007
CmaCh00G003620	MELO3C006513	Melon (DHL92) v3.5.1	cmameB007
CmaCh00G003620	ClCG05G004990	Watermelon (Charleston Gray)	cmawcgB004
CmaCh00G003620	CSPI03G12920	Wild cucumber (PI 183967)	cmacpiB007
CmaCh00G003620	CmoCh14G017690	Cucurbita moschata (Rifu)	cmacmoB004
CmaCh00G003620	CmoCh06G013970	Cucurbita moschata (Rifu)	cmacmoB023
CmaCh00G003620	Lsi05G016240	Bottle gourd (USVL1VR-Ls)	cmalsiB001
CmaCh00G003620	Cp4.1LG03g10490	Cucurbita pepo (Zucchini)	cmacpeB001
CmaCh00G003620	Cp4.1LG08g04150	Cucurbita pepo (Zucchini)	cmacpeB010
CmaCh00G003620	MELO3C006513.2	Melon (DHL92) v3.6.1	cmamedB007
CmaCh00G003620	CsaV3_3G013040	Cucumber (Chinese Long) v3	cmacucB0009
CmaCh00G003620	Cla97C05G086100	Watermelon (97103) v2	cmawmbB010
CmaCh00G003620	Carg23502	Silver-seed gourd	carcmaB1173
CmaCh00G003620	Carg06156	Silver-seed gourd	carcmaB1315

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh00G003620	CmaCh14G017300	Cucurbita maxima (Rimu)	cmacmaB007
CmaCh00G003620	CmaCh06G013920	Cucurbita maxima (Rimu)	cmacmaB024

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh00G003620	Cucumber (Gy14) v2	cgybcmaB283
CmaCh00G003620	Wax gourd	cmawgoB0005