CmoCh14G017690 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh14G017690
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	RNA-directed DNA methylation protein
Location	Cmo_Chr14 : 13681923 .. 13683963 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACCGGTGGTTGAACCGGCCTTTTGAACAAATGTGGAACGTCTCCGATCTCCCCTCGCGCAAAATCCAAACGCCGCGAACTCAAAACTGGTCTCTCAAATTCGAGCTCGATGAATAACTGAGCTATATTGGTGATCTGTCGCAAAATCCATATCGGAGAGGAGCTTCATCTCTACGATTGGACGCTCTCTCTCGCTTTTCGAATTACGAAGGTACTCACCATCACTCTCGCTTGTTGTCGATCCATTACCATCTCTGTTCATATGTAATAAATTCACTTGGTTTTGTGCTTCTTGTCCGATAATCTCTATCCTTGTTTTCCGTTTCAGATTTCTACTTATCGACTCTCGTAATCTTTAATTTCCACTTGTTTTTACTCTGCTTTGAAATGTTTTCATTTTACAGGTCCGATGGGATTTTCGGTGCATTTGTATGAAAATTTATTGTTTATTTGTTTGTTTGAGAAGTCGATCGTAATTTTCTATCACTTGGTTGGTGGGGTCTTCCAGAATGTTGCTTAGAGGGATGAACATTCATCGTTTGATGCAAGTTCTTAGAAATTGCCCTAGATAGCGATGGTTATTAAGTGCACTGCTTATTATCTGAGTGTGATCCCTGGCGGAAACTGTGTGCATTGCTCCATAAGTTGCATGTGCGAGGTGGTTTTTGAGAATGGAGATGTCTATTAGTAAGATTGTGATGGCCTGATAGGGTGAATTTGTTTCTGCGTTGGACCCAGAACCAGAATTGAATTGGTTAATTTGTTCTATGTCTGTGATTAAATTTTGTAATGAACATGAGATTGAAAGTTTGAAGTACATTTTGTTTTATGCTAACTAAAAGCTCTTGTGCTCTTTTTCCATCTCAATAGTAATCTTTTGTATCTGTTGGATCTATTTATTGTGGTTGGCATCTCATATTACTAACTCTTCGTATACTCACATGAATCTTTAAACGTGCTGCTATTTGGTAATCTGTATTGTATTAATCGGCATCATAGCTAACCCATGATCACTTCTTGCCAGAATTACATCATTGACAAAATGAAGAGGCCAATGCCGTGGAATGAACAAGTAGATGTTATATCATCAGGTGAATCTTCTTCCTCTGATTCAGAAACAGGAGTACAAAATGATGGATTCGAGTTCAAGCCTTCCATGGACGATTTCAAAATTCCTGCCAAAGAAATGACAGCTGAAGGTAATTTGACGCATTGCATAAGATCAATTCATAGTGTTTAATGATCAATGCTGCTGTATATATAAATTTTCATGTTCATAGCTTTAAAAAAGAGGGTCTTTGAAATGTCGTTTAACGATGCAGGTATGTTGATTAAAAGGGCCGAAATGTATCAAGAATACATGAAACAGATCCAGATCCCAGCACAACGTGGTTCTGTAATACCATTTACAACATGGATGGGTTTAGGCAAATCTATAAAGCAGCTTTATGGTCAGCCTTTGCATTACTTGACTAACATTCTACTCAAACAGTGGGATCAATTAAGGTTCGGTAGTGTGGATGAATATAAGCCATTGGATACCGTAATTCATCCTAGTAAAGCTGAAGCAACTGTATGGCTGGTTGAAGAGATTCATAGGCGCACCTCGTCACATCATCATGTTGCTAAACTGTGGTTATCAGACCCGATGCACGAAGCTTATGTTGACTCCATTTTCCCCCAACTTTGAAAGCTGCTTTCTAGAAGGCTAACATGTTGATGACAATGTGAATTGTAATAGAAACAGCATAGTTCTTCAGTCACATTGCACTTTAATGTGTAGGTTTTTTTATATAATCCCATTGGGTTTCGTTGTATGCTCTTTGTAATATTATAGAGCTTCTTCAAACTTACCTCCACGGCTTAATAGATCAACCATGCAACCATAATGAACAATCTTTGGGGAGATTCCTAGTTGATTCATGGACTGACTCCTCCTGTATGTGCTGCCTTTGTTTCACAGAATCACCATGGCTGCAAGCTGTTAATATGTTTACAAAAACTGTTTGATATGGTTTCAACTCTTGCCTAAGCATCT

mRNA sequence

ATGAACCGGTGGTTGAACCGGCCTTTTGAACAAATGTGGAACGAGCTTCATCTCTACGATTGGACGCTCTCTCTCGCTTTTCGAATTACGAAGAATTACATCATTGACAAAATGAAGAGGCCAATGCCGTGGAATGAACAAGTAGATGTTATATCATCAGGTGAATCTTCTTCCTCTGATTCAGAAACAGGAGTACAAAATGATGGATTCGAGTTCAAGCCTTCCATGGACGATTTCAAAATTCCTGCCAAAGAAATGACAGCTGAAGGTATGTTGATTAAAAGGGCCGAAATGTATCAAGAATACATGAAACAGATCCAGATCCCAGCACAACGTGGTTCTGTAATACCATTTACAACATGGATGGGTTTAGGCAAATCTATAAAGCAGCTTTATGGTCAGCCTTTGCATTACTTGACTAACATTCTACTCAAACAGTGGGATCAATTAAGGTTCGGTAGTGTGGATGAATATAAGCCATTGGATACCGTAATTCATCCTAGTAAAGCTGAAGCAACTGTATGGCTGGTTGAAGAGATTCATAGGCGCACCTCGTCACATCATCATGTTGCTAAACTGTGGTTATCAGACCCGATGCACGAAGCTTATGTTGACTCCATTTTCCCCCAACTTTGAAAGCTGCTTTCTAGAAGGCTAACATGTTGATGACAATGTGAATTGTAATAGAAACAGCATAGTTCTTCAGTCACATTGCACTTTAATGTGTAGGTTTTTTTATATAATCCCATTGGGTTTCGTTGTATGCTCTTTGTAATATTATAGAGCTTCTTCAAACTTACCTCCACGGCTTAATAGATCAACCATGCAACCATAATGAACAATCTTTGGGGAGATTCCTAGTTGATTCATGGACTGACTCCTCCTGTATGTGCTGCCTTTGTTTCACAGAATCACCATGGCTGCAAGCTGTTAATATGTTTACAAAAACTGTTTGATATGGTTTCAACTCTTGCCTAAGCATCT

Coding sequence (CDS)

ATGAACCGGTGGTTGAACCGGCCTTTTGAACAAATGTGGAACGAGCTTCATCTCTACGATTGGACGCTCTCTCTCGCTTTTCGAATTACGAAGAATTACATCATTGACAAAATGAAGAGGCCAATGCCGTGGAATGAACAAGTAGATGTTATATCATCAGGTGAATCTTCTTCCTCTGATTCAGAAACAGGAGTACAAAATGATGGATTCGAGTTCAAGCCTTCCATGGACGATTTCAAAATTCCTGCCAAAGAAATGACAGCTGAAGGTATGTTGATTAAAAGGGCCGAAATGTATCAAGAATACATGAAACAGATCCAGATCCCAGCACAACGTGGTTCTGTAATACCATTTACAACATGGATGGGTTTAGGCAAATCTATAAAGCAGCTTTATGGTCAGCCTTTGCATTACTTGACTAACATTCTACTCAAACAGTGGGATCAATTAAGGTTCGGTAGTGTGGATGAATATAAGCCATTGGATACCGTAATTCATCCTAGTAAAGCTGAAGCAACTGTATGGCTGGTTGAAGAGATTCATAGGCGCACCTCGTCACATCATCATGTTGCTAAACTGTGGTTATCAGACCCGATGCACGAAGCTTATGTTGACTCCATTTTCCCCCAACTTTGA

Homology

[Close]

BLAST of CmoCh14G017690 vs. Swiss-Prot
Match: RDM1_ARATH (Protein RDM1 OS=Arabidopsis thaliana GN=RDM1 PE=1 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 9.8e-48
Identity = 90/158 (56.96%), Postives = 120/158 (75.95%), Query Frame = 1


Query: 53  SGESSSSDSETGVQNDGFEFKPSMDDFKIPAKEMTAEGMLIKRAEMYQEYMKQIQIPAQR 112
           SG+S SSD +  + +DGF             +++  EG L++RAEMYQ+YMKQ+ IP  R
Sbjct: 12  SGDSGSSDVDAEI-SDGFS------PLDTSHRDVADEGSLLRRAEMYQDYMKQVPIPTNR 71

Query: 113 GSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEA 172
           GS+IPFT+W+GL  S+KQLYGQPLHYLTN+LL++WDQ RFG+  E + LD++IHP+KAEA
Sbjct: 72  GSLIPFTSWVGLSISMKQLYGQPLHYLTNVLLQRWDQSRFGTDSEEQRLDSIIHPTKAEA 131

Query: 173 TVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQ 211
           T+WLVEEIHR T SH H+A LW SDPM+ +++D IFP+
Sbjct: 132 TIWLVEEIHRLTPSHLHMALLWRSDPMYHSFIDPIFPE 162

[Close]

BLAST of CmoCh14G017690 vs. TrEMBL
Match: A0A0A0L8M0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G146430 PE=4 SV=1)

HSP 1 Score: 345.9 bits (886), Expect = 3.5e-92
Identity = 163/174 (93.68%), Postives = 170/174 (97.70%), Query Frame = 1


Query: 38  MKRPMPWNEQVDVISSGESSSSDSETGVQNDGFEFKPSMDDFKIPAKEMTAEGMLIKRAE 97
           MKRPMPWNEQVD+ISSGESSSSDSE  +QNDG+EFKPS+DDFKIPAKEMT+EGML+KRAE
Sbjct: 1   MKRPMPWNEQVDIISSGESSSSDSEAAIQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAE 60

Query: 98  MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRFGSVDE 157
           MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLR GS DE
Sbjct: 61  MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRLGSADE 120

Query: 158 YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL 212
           YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMH+AYVDSIFPQL
Sbjct: 121 YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHQAYVDSIFPQL 174

[Close]

BLAST of CmoCh14G017690 vs. TrEMBL
Match: M5XES6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010153mg PE=4 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 3.5e-68
Identity = 128/176 (72.73%), Postives = 148/176 (84.09%), Query Frame = 1


Query: 38  MKRPMPWNEQVDVISSGESSSSDSE--TGVQNDGFEFKPSMDDFKIPAKEMTAEGMLIKR 97
           MKR  PW+EQVDVISS +SSSSD E  T +++D  +   +    + PAKE T+EG L +R
Sbjct: 83  MKRAFPWDEQVDVISSDDSSSSDMEMETNIESDSKQLTNNTTSDQ-PAKERTSEGALTRR 142

Query: 98  AEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRFGSV 157
           AEMYQEYMKQI IPA RGSVIPFT+WMGLGKSIKQLYGQPLHYLTNILLKQWDQLR GS 
Sbjct: 143 AEMYQEYMKQIPIPAHRGSVIPFTSWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRMGSE 202

Query: 158 DEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL 212
           +EY+PLDT+IHP KAEAT+WL+EE+HR TSSH+H+A LWLSDPMH A+VDSIFPQL
Sbjct: 203 EEYRPLDTIIHPCKAEATIWLMEEVHRHTSSHYHIANLWLSDPMHHAFVDSIFPQL 257

[Close]

BLAST of CmoCh14G017690 vs. TrEMBL
Match: A0A0D2VN17_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G165600 PE=4 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 9.5e-66
Identity = 124/195 (63.59%), Postives = 157/195 (80.51%), Query Frame = 1


Query: 24  SLAFRITK-NYIIDKMKRPMPWNEQVDVISSGESSSSDSETGVQNDGFEFKPSMDD---- 83
           SL+  + K N+ ++ MKR +PW++QVDVISS ESSSS S +   +  F+ +  ++D    
Sbjct: 9   SLSLSVNKRNFGVNIMKRALPWSDQVDVISSDESSSSSSSSSSYSS-FDVEVQVNDETKN 68

Query: 84  --FKIPAKEMTAEGMLIKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPL 143
                P KE++++G+LI++AE+YQEYMKQ+ IP QRGSVIPFTTWMGLG+SIKQLYGQPL
Sbjct: 69  VAVDQPPKELSSDGLLIRKAEIYQEYMKQLPIPTQRGSVIPFTTWMGLGRSIKQLYGQPL 128

Query: 144 HYLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLS 203
           HYLTNILLKQWD  R GS DE++PLD ++HP KAEATVWLVEE+HR+TSSHHH+AKLW S
Sbjct: 129 HYLTNILLKQWDHSRVGSEDEHRPLDIIVHPCKAEATVWLVEELHRQTSSHHHMAKLWQS 188

Query: 204 DPMHEAYVDSIFPQL 212
           DPMH A++DSIFPQL
Sbjct: 189 DPMHHAFIDSIFPQL 202

[Close]

BLAST of CmoCh14G017690 vs. TrEMBL
Match: A0A061EN17_THECC (Rna-directed dna methylation 1 isoform 1 OS=Theobroma cacao GN=TCM_020673 PE=4 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 4.7e-65
Identity = 122/176 (69.32%), Postives = 142/176 (80.68%), Query Frame = 1


Query: 38  MKRPMPWNEQVDVISSGESSSSDSETGVQNDGFEFKPSMDDFKI--PAKEMTAEGMLIKR 97
           MKR +PW+ QVDVI S ESSSS S +   +   +      +  +  P KE+++EG+LI+R
Sbjct: 1   MKRALPWSAQVDVILSDESSSSSSSSSSSDSDIQVNNGTTNAAVDQPPKELSSEGLLIRR 60

Query: 98  AEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRFGSV 157
           AEMYQEYMKQ+ IP QRGS+IPFTTWMGLG+SIKQLYGQPLHYLTNILLKQWD LR GS 
Sbjct: 61  AEMYQEYMKQLPIPTQRGSIIPFTTWMGLGRSIKQLYGQPLHYLTNILLKQWDHLRIGSE 120

Query: 158 DEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL 212
           DE+ PLD VIHP KAEATVWLVEE+HR TSSHHH+AKLW SDPMH A+VDSIFP+L
Sbjct: 121 DEHSPLDIVIHPCKAEATVWLVEELHRCTSSHHHMAKLWQSDPMHHAFVDSIFPKL 176

[Close]

BLAST of CmoCh14G017690 vs. TrEMBL
Match: A0A0D2UUT9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G165600 PE=4 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 1.8e-64
Identity = 120/180 (66.67%), Postives = 148/180 (82.22%), Query Frame = 1


Query: 38  MKRPMPWNEQVDVISSGESSSSDSETGVQNDGFEFKPSMDD------FKIPAKEMTAEGM 97
           MKR +PW++QVDVISS ESSSS S +   +  F+ +  ++D         P KE++++G+
Sbjct: 1   MKRALPWSDQVDVISSDESSSSSSSSSSYSS-FDVEVQVNDETKNVAVDQPPKELSSDGL 60

Query: 98  LIKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLR 157
           LI++AE+YQEYMKQ+ IP QRGSVIPFTTWMGLG+SIKQLYGQPLHYLTNILLKQWD  R
Sbjct: 61  LIRKAEIYQEYMKQLPIPTQRGSVIPFTTWMGLGRSIKQLYGQPLHYLTNILLKQWDHSR 120

Query: 158 FGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL 212
            GS DE++PLD ++HP KAEATVWLVEE+HR+TSSHHH+AKLW SDPMH A++DSIFPQL
Sbjct: 121 VGSEDEHRPLDIIVHPCKAEATVWLVEELHRQTSSHHHMAKLWQSDPMHHAFIDSIFPQL 179

[Close]

BLAST of CmoCh14G017690 vs. TAIR10
Match: AT3G22680.1 (AT3G22680.1 RNA-DIRECTED DNA METHYLATION 1)

HSP 1 Score: 191.4 bits (485), Expect = 5.5e-49
Identity = 90/158 (56.96%), Postives = 120/158 (75.95%), Query Frame = 1


Query: 53  SGESSSSDSETGVQNDGFEFKPSMDDFKIPAKEMTAEGMLIKRAEMYQEYMKQIQIPAQR 112
           SG+S SSD +  + +DGF             +++  EG L++RAEMYQ+YMKQ+ IP  R
Sbjct: 12  SGDSGSSDVDAEI-SDGFS------PLDTSHRDVADEGSLLRRAEMYQDYMKQVPIPTNR 71

Query: 113 GSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEA 172
           GS+IPFT+W+GL  S+KQLYGQPLHYLTN+LL++WDQ RFG+  E + LD++IHP+KAEA
Sbjct: 72  GSLIPFTSWVGLSISMKQLYGQPLHYLTNVLLQRWDQSRFGTDSEEQRLDSIIHPTKAEA 131

Query: 173 TVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQ 211
           T+WLVEEIHR T SH H+A LW SDPM+ +++D IFP+
Sbjct: 132 TIWLVEEIHRLTPSHLHMALLWRSDPMYHSFIDPIFPE 162

[Close]

BLAST of CmoCh14G017690 vs. NCBI nr
Match: gi|659076365|ref|XP_008438640.1| (PREDICTED: protein RDM1 [Cucumis melo])

HSP 1 Score: 347.8 bits (891), Expect = 1.3e-92
Identity = 166/174 (95.40%), Postives = 170/174 (97.70%), Query Frame = 1


Query: 38  MKRPMPWNEQVDVISSGESSSSDSETGVQNDGFEFKPSMDDFKIPAKEMTAEGMLIKRAE 97
           MKRPMPWNEQVDVISSGESSSSDSE  VQNDG+EFKPS+DDFKIPAKEMT+EGML+KRAE
Sbjct: 1   MKRPMPWNEQVDVISSGESSSSDSEAAVQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAE 60

Query: 98  MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRFGSVDE 157
           MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLR GS DE
Sbjct: 61  MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRLGSADE 120

Query: 158 YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL 212
           YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
Sbjct: 121 YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL 174

[Close]

BLAST of CmoCh14G017690 vs. NCBI nr
Match: gi|449432680|ref|XP_004134127.1| (PREDICTED: protein RDM1 [Cucumis sativus])

HSP 1 Score: 345.9 bits (886), Expect = 5.0e-92
Identity = 163/174 (93.68%), Postives = 170/174 (97.70%), Query Frame = 1


Query: 38  MKRPMPWNEQVDVISSGESSSSDSETGVQNDGFEFKPSMDDFKIPAKEMTAEGMLIKRAE 97
           MKRPMPWNEQVD+ISSGESSSSDSE  +QNDG+EFKPS+DDFKIPAKEMT+EGML+KRAE
Sbjct: 1   MKRPMPWNEQVDIISSGESSSSDSEAAIQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAE 60

Query: 98  MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRFGSVDE 157
           MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLR GS DE
Sbjct: 61  MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRLGSADE 120

Query: 158 YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL 212
           YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMH+AYVDSIFPQL
Sbjct: 121 YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHQAYVDSIFPQL 174

[Close]

BLAST of CmoCh14G017690 vs. NCBI nr
Match: gi|645235451|ref|XP_008224276.1| (PREDICTED: protein RDM1 [Prunus mume])

HSP 1 Score: 267.7 bits (683), Expect = 1.7e-68
Identity = 128/176 (72.73%), Postives = 149/176 (84.66%), Query Frame = 1


Query: 38  MKRPMPWNEQVDVISSGESSSSDSE--TGVQNDGFEFKPSMDDFKIPAKEMTAEGMLIKR 97
           MKR  PW+EQVDVISS +SSSSD E  T +++D  +   +    + PAKE T+EG L++R
Sbjct: 83  MKRAFPWDEQVDVISSDDSSSSDMEMETNIESDSKQLTNNTTSDQ-PAKERTSEGALVRR 142

Query: 98  AEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRFGSV 157
           AEMYQEYMKQI IPA RGSVIPFT+WMGLGKSIKQLYGQPLHYLTNILLKQWDQLR GS 
Sbjct: 143 AEMYQEYMKQIPIPAHRGSVIPFTSWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRMGSE 202

Query: 158 DEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL 212
           +EY+PLDT+IHP KAEAT+WL+EE+HR TSSH+H+A LWLSDPMH A+VDSIFPQL
Sbjct: 203 EEYRPLDTIIHPCKAEATIWLMEEVHRHTSSHYHIANLWLSDPMHHAFVDSIFPQL 257

[Close]

BLAST of CmoCh14G017690 vs. NCBI nr
Match: gi|596187590|ref|XP_007223423.1| (hypothetical protein PRUPE_ppa010153mg [Prunus persica])

HSP 1 Score: 266.2 bits (679), Expect = 5.0e-68
Identity = 128/176 (72.73%), Postives = 148/176 (84.09%), Query Frame = 1


Query: 38  MKRPMPWNEQVDVISSGESSSSDSE--TGVQNDGFEFKPSMDDFKIPAKEMTAEGMLIKR 97
           MKR  PW+EQVDVISS +SSSSD E  T +++D  +   +    + PAKE T+EG L +R
Sbjct: 83  MKRAFPWDEQVDVISSDDSSSSDMEMETNIESDSKQLTNNTTSDQ-PAKERTSEGALTRR 142

Query: 98  AEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRFGSV 157
           AEMYQEYMKQI IPA RGSVIPFT+WMGLGKSIKQLYGQPLHYLTNILLKQWDQLR GS 
Sbjct: 143 AEMYQEYMKQIPIPAHRGSVIPFTSWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRMGSE 202

Query: 158 DEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL 212
           +EY+PLDT+IHP KAEAT+WL+EE+HR TSSH+H+A LWLSDPMH A+VDSIFPQL
Sbjct: 203 EEYRPLDTIIHPCKAEATIWLMEEVHRHTSSHYHIANLWLSDPMHHAFVDSIFPQL 257

[Close]

BLAST of CmoCh14G017690 vs. NCBI nr
Match: gi|1009141332|ref|XP_015888137.1| (PREDICTED: protein RDM1 [Ziziphus jujuba])

HSP 1 Score: 263.8 bits (673), Expect = 2.5e-67
Identity = 129/178 (72.47%), Postives = 149/178 (83.71%), Query Frame = 1


Query: 38  MKRPMPWNEQVDVISSG--ESSSSDSETGVQNDGFEFKPSMDDFKI--PAKEMTAEGMLI 97
           MKR +PWNE+VDVISS   ESSS D E  + N+G   K S DD     P  E+T+EG LI
Sbjct: 1   MKRTVPWNEEVDVISSDSDESSSLDKEVEI-NNGRAVKQSTDDMMADHPTIEITSEGSLI 60

Query: 98  KRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRFG 157
           +RAEMYQEYMK+I IP +RGS+IPF+TWMGLGKSIKQLYGQPLHYLTN+LLKQWDQLRF 
Sbjct: 61  RRAEMYQEYMKRIPIPTRRGSIIPFSTWMGLGKSIKQLYGQPLHYLTNVLLKQWDQLRFN 120

Query: 158 SVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL 212
           S DE++PLDT+IHP KAEATVWL+EE+HR TSSH+H+AKLWLSDPMH A+VDSIFPQL
Sbjct: 121 SEDEHRPLDTIIHPCKAEATVWLIEEVHRCTSSHYHIAKLWLSDPMHHAFVDSIFPQL 177

The following BLAST results are available for this feature:

BLAST of CmoCh14G017690 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RDM1_ARATH	9.8e-48	56.96	Protein RDM1 OS=Arabidopsis thaliana GN=RDM1 PE=1 SV=1	[more]

BLAST of CmoCh14G017690 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L8M0_CUCSA	3.5e-92	93.68	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G146430 PE=4 SV=1	[more]
M5XES6_PRUPE	3.5e-68	72.73	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010153mg PE=4 SV=1	[more]
A0A0D2VN17_GOSRA	9.5e-66	63.59	Uncharacterized protein OS=Gossypium raimondii GN=B456_011G165600 PE=4 SV=1	[more]
A0A061EN17_THECC	4.7e-65	69.32	Rna-directed dna methylation 1 isoform 1 OS=Theobroma cacao GN=TCM_020673 PE=4 S...	[more]
A0A0D2UUT9_GOSRA	1.8e-64	66.67	Uncharacterized protein OS=Gossypium raimondii GN=B456_011G165600 PE=4 SV=1	[more]

BLAST of CmoCh14G017690 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G22680.1	5.5e-49	56.96	RNA-DIRECTED DNA METHYLATION 1	[more]

BLAST of CmoCh14G017690 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659076365\|ref\|XP_008438640.1\|	1.3e-92	95.40	PREDICTED: protein RDM1 [Cucumis melo]	[more]
gi\|449432680\|ref\|XP_004134127.1\|	5.0e-92	93.68	PREDICTED: protein RDM1 [Cucumis sativus]	[more]
gi\|645235451\|ref\|XP_008224276.1\|	1.7e-68	72.73	PREDICTED: protein RDM1 [Prunus mume]	[more]
gi\|596187590\|ref\|XP_007223423.1\|	5.0e-68	72.73	hypothetical protein PRUPE_ppa010153mg [Prunus persica]	[more]
gi\|1009141332\|ref\|XP_015888137.1\|	2.5e-67	72.47	PREDICTED: protein RDM1 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR015270	RDM1

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **Biological Process**
Term	Definition
GO:0044030	regulation of DNA methylation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0070918	production of small RNA involved in gene silencing by RNA
biological_process	GO:0044030	regulation of DNA methylation
cellular_component	GO:0000419	DNA-directed RNA polymerase V complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0043621	protein self-association
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh14G017690.1	CmoCh14G017690.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR015270	Protein RDM1	PFAM	PF09187	DUF1950	coord: 92..210 score: 1.7
IPR015270	Protein RDM1	unknown	SSF109920	Hypothetical protein At3g22680	coord: 90..210 score: 1.57
None	No IPR available	PANTHER	PTHR36366	FAMILY NOT NAMED	coord: 39..211 score: 1.2
None	No IPR available	PANTHER	PTHR36366:SF1	PROTEIN RDM1	coord: 39..211 score: 1.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh14G017690	Cucsa.254500	Cucumber (Gy14) v1	cgycmoB0700
CmoCh14G017690	CmaCh00G003620	Cucurbita maxima (Rimu)	cmacmoB004
CmoCh14G017690	CmaCh14G017300	Cucurbita maxima (Rimu)	cmacmoB245
CmoCh14G017690	CmaCh06G013920	Cucurbita maxima (Rimu)	cmacmoB797
CmoCh14G017690	Cla021604	Watermelon (97103) v1	cmowmB231
CmoCh14G017690	Csa3G146430	Cucumber (Chinese Long) v2	cmocuB239
CmoCh14G017690	MELO3C006513	Melon (DHL92) v3.5.1	cmomeB230
CmoCh14G017690	ClCG05G004990	Watermelon (Charleston Gray)	cmowcgB219
CmoCh14G017690	CSPI03G12920	Wild cucumber (PI 183967)	cmocpiB243
CmoCh14G017690	Lsi05G016240	Bottle gourd (USVL1VR-Ls)	cmolsiB233
CmoCh14G017690	Cp4.1LG03g10490	Cucurbita pepo (Zucchini)	cmocpeB245
CmoCh14G017690	Cp4.1LG08g04150	Cucurbita pepo (Zucchini)	cmocpeB254
CmoCh14G017690	MELO3C006513.2	Melon (DHL92) v3.6.1	cmomedB260
CmoCh14G017690	CsaV3_3G013040	Cucumber (Chinese Long) v3	cmocucB0283
CmoCh14G017690	Cla97C05G086100	Watermelon (97103) v2	cmowmbB243
CmoCh14G017690	Bhi01G000563	Wax gourd	cmowgoB0317
CmoCh14G017690	CsGy3G013060	Cucumber (Gy14) v2	cgybcmoB290
CmoCh14G017690	Carg06156	Silver-seed gourd	carcmoB1284
CmoCh14G017690	Carg23502	Silver-seed gourd	carcmoB1142

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh14G017690	CmoCh06G013970	Cucurbita moschata (Rifu)	cmocmoB224

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh14G017690	Cucumber (Chinese Long) v3	cmocucB0267
CmoCh14G017690	Cucumber (Chinese Long) v3	cmocucB0315
CmoCh14G017690	Watermelon (97103) v2	cmowmbB246
CmoCh14G017690	Watermelon (97103) v2	cmowmbB253
CmoCh14G017690	Watermelon (97103) v2	cmowmbB263
CmoCh14G017690	Wax gourd	cmowgoB0300
CmoCh14G017690	Wax gourd	cmowgoB0333
CmoCh14G017690	Cucurbita moschata (Rifu)	cmocmoB197
CmoCh14G017690	Cucurbita moschata (Rifu)	cmocmoB198
CmoCh14G017690	Cucurbita moschata (Rifu)	cmocmoB213
CmoCh14G017690	Cucurbita moschata (Rifu)	cmocmoB233
CmoCh14G017690	Cucurbita maxima (Rimu)	cmacmoB350
CmoCh14G017690	Cucurbita maxima (Rimu)	cmacmoB883
CmoCh14G017690	Watermelon (Charleston Gray)	cmowcgB221
CmoCh14G017690	Watermelon (Charleston Gray)	cmowcgB227
CmoCh14G017690	Watermelon (97103) v1	cmowmB223
CmoCh14G017690	Watermelon (97103) v1	cmowmB239
CmoCh14G017690	Cucurbita pepo (Zucchini)	cmocpeB223
CmoCh14G017690	Cucurbita pepo (Zucchini)	cmocpeB230
CmoCh14G017690	Bottle gourd (USVL1VR-Ls)	cmolsiB213
CmoCh14G017690	Bottle gourd (USVL1VR-Ls)	cmolsiB227
CmoCh14G017690	Bottle gourd (USVL1VR-Ls)	cmolsiB235
CmoCh14G017690	Cucumber (Gy14) v2	cgybcmoB181
CmoCh14G017690	Cucumber (Gy14) v2	cgybcmoB895
CmoCh14G017690	Melon (DHL92) v3.6.1	cmomedB251
CmoCh14G017690	Silver-seed gourd	carcmoB0150
CmoCh14G017690	Silver-seed gourd	carcmoB0319
CmoCh14G017690	Silver-seed gourd	carcmoB0444