Cla021604 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla021604
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Protein RDM1 (AHRD V1 ***- RDM1_ARATH); contains Interpro domain(s) IPR015270 Protein of unknown function DUF1950
Location	Chr5 : 4620032 .. 4620677 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAGGCCAATGCCCTGGAATGAACAAGTAGATGTTATATCATCAGGTGAATCTTCTTCCTCTGATTCGGAAACAGGAGTACAAAATGATGTATTTGAGTTCAAGCCTTCCCTGGACGATTTCAAAATTCCTGCCAAAGAAATGACATCTGAAGGTATTTTGGCCTTGTATGAGAGTCAATTCAAAGTCTCTAATAATCAATGCTGCTGTATATTTTCAAAATTCATTAGCTTTGAAGAAGAGGATCTTCTTTGAAATGTCTTCTAACAATGCAGGTATGTTGATTAAAAGGGCGGAAATGTATCAAGAATACATGAAACAGATCCAGATCCCAGCACAACGTGGTTCTGTAATACCATTTACAACATGGATGGGTTTAGGAAAATCTATAAAGCAGCTTTATGGTCAGCCTTTGCATTACTTGACTAACATTCTACTCAAACAGTGGGATCAATTAAGGTTCGGAAGTGTGGATGAATATAAGCCATTGGATACTGTAATTCATCCGAGTAAAGCTGAAGCAACTGTATGGCTGGTTGAAGAGATTCATAGGCGTACCTCATCACATCATCATGTTGCTAAACTCTGGTTATCAGACCCAATGCACGAAGCGTATGTTGACTCCATTTTCCCCCAACTATGA

mRNA sequence

ATGAAGAGGCCAATGCCCTGGAATGAACAAGTAGATGTTATATCATCAGGTGAATCTTCTTCCTCTGATTCGGAAACAGGAGTACAAAATGATGTATTTGAGTTCAAGCCTTCCCTGGACGATTTCAAAATTCCTGCCAAAGAAATGACATCTGAAGGTATGTTGATTAAAAGGGCGGAAATGTATCAAGAATACATGAAACAGATCCAGATCCCAGCACAACGTGGTTCTGTAATACCATTTACAACATGGATGGGTTTAGGAAAATCTATAAAGCAGCTTTATGGTCAGCCTTTGCATTACTTGACTAACATTCTACTCAAACAGTGGGATCAATTAAGGTTCGGAAGTGTGGATGAATATAAGCCATTGGATACTGTAATTCATCCGAGTAAAGCTGAAGCAACTGTATGGCTGGTTGAAGAGATTCATAGGCGTACCTCATCACATCATCATGTTGCTAAACTCTGGTTATCAGACCCAATGCACGAAGCGTATGTTGACTCCATTTTCCCCCAACTATGA

Coding sequence (CDS)

ATGAAGAGGCCAATGCCCTGGAATGAACAAGTAGATGTTATATCATCAGGTGAATCTTCTTCCTCTGATTCGGAAACAGGAGTACAAAATGATGTATTTGAGTTCAAGCCTTCCCTGGACGATTTCAAAATTCCTGCCAAAGAAATGACATCTGAAGGTATGTTGATTAAAAGGGCGGAAATGTATCAAGAATACATGAAACAGATCCAGATCCCAGCACAACGTGGTTCTGTAATACCATTTACAACATGGATGGGTTTAGGAAAATCTATAAAGCAGCTTTATGGTCAGCCTTTGCATTACTTGACTAACATTCTACTCAAACAGTGGGATCAATTAAGGTTCGGAAGTGTGGATGAATATAAGCCATTGGATACTGTAATTCATCCGAGTAAAGCTGAAGCAACTGTATGGCTGGTTGAAGAGATTCATAGGCGTACCTCATCACATCATCATGTTGCTAAACTCTGGTTATCAGACCCAATGCACGAAGCGTATGTTGACTCCATTTTCCCCCAACTATGA

Protein sequence

MKRPMPWNEQVDVISSGESSSSDSETGVQNDVFEFKPSLDDFKIPAKEMTSEGMLIKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL

Homology

[Close]

BLAST of Cla021604 vs. Swiss-Prot
Match: RDM1_ARATH (Protein RDM1 OS=Arabidopsis thaliana GN=RDM1 PE=1 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 1.4e-47
Identity = 91/158 (57.59%), Postives = 120/158 (75.95%), Query Frame = 1


Query: 16  SGESSSSDSETGVQNDVFEFKPSLDDFKIPAKEMTSEGMLIKRAEMYQEYMKQIQIPAQR 75
           SG+S SSD +  + +    F P LD      +++  EG L++RAEMYQ+YMKQ+ IP  R
Sbjct: 12  SGDSGSSDVDAEISDG---FSP-LDTSH---RDVADEGSLLRRAEMYQDYMKQVPIPTNR 71

Query: 76  GSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEA 135
           GS+IPFT+W+GL  S+KQLYGQPLHYLTN+LL++WDQ RFG+  E + LD++IHP+KAEA
Sbjct: 72  GSLIPFTSWVGLSISMKQLYGQPLHYLTNVLLQRWDQSRFGTDSEEQRLDSIIHPTKAEA 131

Query: 136 TVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQ 174
           T+WLVEEIHR T SH H+A LW SDPM+ +++D IFP+
Sbjct: 132 TIWLVEEIHRLTPSHLHMALLWRSDPMYHSFIDPIFPE 162

[Close]

BLAST of Cla021604 vs. TrEMBL
Match: A0A0A0L8M0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G146430 PE=4 SV=1)

HSP 1 Score: 344.7 bits (883), Expect = 6.4e-92
Identity = 164/174 (94.25%), Postives = 169/174 (97.13%), Query Frame = 1


Query: 1   MKRPMPWNEQVDVISSGESSSSDSETGVQNDVFEFKPSLDDFKIPAKEMTSEGMLIKRAE 60
           MKRPMPWNEQVD+ISSGESSSSDSE  +QND +EFKPSLDDFKIPAKEMTSEGML+KRAE
Sbjct: 1   MKRPMPWNEQVDIISSGESSSSDSEAAIQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAE 60

Query: 61  MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRFGSVDE 120
           MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLR GS DE
Sbjct: 61  MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRLGSADE 120

Query: 121 YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL 175
           YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMH+AYVDSIFPQL
Sbjct: 121 YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHQAYVDSIFPQL 174

[Close]

BLAST of Cla021604 vs. TrEMBL
Match: M5XES6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010153mg PE=4 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 1.7e-68
Identity = 129/176 (73.30%), Postives = 148/176 (84.09%), Query Frame = 1


Query: 1   MKRPMPWNEQVDVISSGESSSSDSE--TGVQNDVFEFKPSLDDFKIPAKEMTSEGMLIKR 60
           MKR  PW+EQVDVISS +SSSSD E  T +++D  +   +    + PAKE TSEG L +R
Sbjct: 83  MKRAFPWDEQVDVISSDDSSSSDMEMETNIESDSKQLTNNTTSDQ-PAKERTSEGALTRR 142

Query: 61  AEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRFGSV 120
           AEMYQEYMKQI IPA RGSVIPFT+WMGLGKSIKQLYGQPLHYLTNILLKQWDQLR GS 
Sbjct: 143 AEMYQEYMKQIPIPAHRGSVIPFTSWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRMGSE 202

Query: 121 DEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL 175
           +EY+PLDT+IHP KAEAT+WL+EE+HR TSSH+H+A LWLSDPMH A+VDSIFPQL
Sbjct: 203 EEYRPLDTIIHPCKAEATIWLMEEVHRHTSSHYHIANLWLSDPMHHAFVDSIFPQL 257

[Close]

BLAST of Cla021604 vs. TrEMBL
Match: A0A061EN17_THECC (Rna-directed dna methylation 1 isoform 1 OS=Theobroma cacao GN=TCM_020673 PE=4 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 2.3e-65
Identity = 123/176 (69.89%), Postives = 142/176 (80.68%), Query Frame = 1


Query: 1   MKRPMPWNEQVDVISSGESSSSDSETGVQNDVFEFKPSLDDFKI--PAKEMTSEGMLIKR 60
           MKR +PW+ QVDVI S ESSSS S +   +   +      +  +  P KE++SEG+LI+R
Sbjct: 1   MKRALPWSAQVDVILSDESSSSSSSSSSSDSDIQVNNGTTNAAVDQPPKELSSEGLLIRR 60

Query: 61  AEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRFGSV 120
           AEMYQEYMKQ+ IP QRGS+IPFTTWMGLG+SIKQLYGQPLHYLTNILLKQWD LR GS 
Sbjct: 61  AEMYQEYMKQLPIPTQRGSIIPFTTWMGLGRSIKQLYGQPLHYLTNILLKQWDHLRIGSE 120

Query: 121 DEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL 175
           DE+ PLD VIHP KAEATVWLVEE+HR TSSHHH+AKLW SDPMH A+VDSIFP+L
Sbjct: 121 DEHSPLDIVIHPCKAEATVWLVEELHRCTSSHHHMAKLWQSDPMHHAFVDSIFPKL 176

[Close]

BLAST of Cla021604 vs. TrEMBL
Match: A0A0D2VN17_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G165600 PE=4 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 5.1e-65
Identity = 121/180 (67.22%), Postives = 148/180 (82.22%), Query Frame = 1


Query: 1   MKRPMPWNEQVDVISSGESSSSDSETGVQNDVFEFKPSLDD------FKIPAKEMTSEGM 60
           MKR +PW++QVDVISS ESSSS S +   +  F+ +  ++D         P KE++S+G+
Sbjct: 24  MKRALPWSDQVDVISSDESSSSSSSSSSYSS-FDVEVQVNDETKNVAVDQPPKELSSDGL 83

Query: 61  LIKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLR 120
           LI++AE+YQEYMKQ+ IP QRGSVIPFTTWMGLG+SIKQLYGQPLHYLTNILLKQWD  R
Sbjct: 84  LIRKAEIYQEYMKQLPIPTQRGSVIPFTTWMGLGRSIKQLYGQPLHYLTNILLKQWDHSR 143

Query: 121 FGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL 175
            GS DE++PLD ++HP KAEATVWLVEE+HR+TSSHHH+AKLW SDPMH A++DSIFPQL
Sbjct: 144 VGSEDEHRPLDIIVHPCKAEATVWLVEELHRQTSSHHHMAKLWQSDPMHHAFIDSIFPQL 202

[Close]

BLAST of Cla021604 vs. TrEMBL
Match: A0A0B0PZ62_GOSAR (Protein RDM1-like protein OS=Gossypium arboreum GN=F383_07886 PE=4 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 5.1e-65
Identity = 121/180 (67.22%), Postives = 148/180 (82.22%), Query Frame = 1


Query: 1   MKRPMPWNEQVDVISSGESSSSDSETGVQNDVFEFKPSLDD------FKIPAKEMTSEGM 60
           MKR +PW++QVDVISS ESSSS S +   +  F+ +  ++D         P KE++S+G+
Sbjct: 1   MKRALPWSDQVDVISSDESSSSSSSSSSYSS-FDVEVQVNDGTKNVAVDQPPKELSSDGL 60

Query: 61  LIKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLR 120
           LI++AE+YQEYMKQ+ IP QRGSVIPFTTWMGLG+SIKQLYGQPLHYLTNILLKQWD  R
Sbjct: 61  LIRKAEIYQEYMKQLPIPTQRGSVIPFTTWMGLGRSIKQLYGQPLHYLTNILLKQWDHSR 120

Query: 121 FGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL 175
            GS DE++PLD ++HP KAEATVWLVEE+HR+TSSHHH+AKLW SDPMH A++DSIFPQL
Sbjct: 121 VGSEDEHRPLDIIVHPCKAEATVWLVEELHRQTSSHHHMAKLWQSDPMHHAFIDSIFPQL 179

[Close]

BLAST of Cla021604 vs. NCBI nr
Match: gi|659076365|ref|XP_008438640.1| (PREDICTED: protein RDM1 [Cucumis melo])

HSP 1 Score: 346.7 bits (888), Expect = 2.4e-92
Identity = 167/174 (95.98%), Postives = 169/174 (97.13%), Query Frame = 1


Query: 1   MKRPMPWNEQVDVISSGESSSSDSETGVQNDVFEFKPSLDDFKIPAKEMTSEGMLIKRAE 60
           MKRPMPWNEQVDVISSGESSSSDSE  VQND +EFKPSLDDFKIPAKEMTSEGML+KRAE
Sbjct: 1   MKRPMPWNEQVDVISSGESSSSDSEAAVQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAE 60

Query: 61  MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRFGSVDE 120
           MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLR GS DE
Sbjct: 61  MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRLGSADE 120

Query: 121 YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL 175
           YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
Sbjct: 121 YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL 174

[Close]

BLAST of Cla021604 vs. NCBI nr
Match: gi|449432680|ref|XP_004134127.1| (PREDICTED: protein RDM1 [Cucumis sativus])

HSP 1 Score: 344.7 bits (883), Expect = 9.2e-92
Identity = 164/174 (94.25%), Postives = 169/174 (97.13%), Query Frame = 1


Query: 1   MKRPMPWNEQVDVISSGESSSSDSETGVQNDVFEFKPSLDDFKIPAKEMTSEGMLIKRAE 60
           MKRPMPWNEQVD+ISSGESSSSDSE  +QND +EFKPSLDDFKIPAKEMTSEGML+KRAE
Sbjct: 1   MKRPMPWNEQVDIISSGESSSSDSEAAIQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAE 60

Query: 61  MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRFGSVDE 120
           MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLR GS DE
Sbjct: 61  MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRLGSADE 120

Query: 121 YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL 175
           YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMH+AYVDSIFPQL
Sbjct: 121 YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHQAYVDSIFPQL 174

[Close]

BLAST of Cla021604 vs. NCBI nr
Match: gi|645235451|ref|XP_008224276.1| (PREDICTED: protein RDM1 [Prunus mume])

HSP 1 Score: 268.5 bits (685), Expect = 8.3e-69
Identity = 129/176 (73.30%), Postives = 149/176 (84.66%), Query Frame = 1


Query: 1   MKRPMPWNEQVDVISSGESSSSDSE--TGVQNDVFEFKPSLDDFKIPAKEMTSEGMLIKR 60
           MKR  PW+EQVDVISS +SSSSD E  T +++D  +   +    + PAKE TSEG L++R
Sbjct: 83  MKRAFPWDEQVDVISSDDSSSSDMEMETNIESDSKQLTNNTTSDQ-PAKERTSEGALVRR 142

Query: 61  AEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRFGSV 120
           AEMYQEYMKQI IPA RGSVIPFT+WMGLGKSIKQLYGQPLHYLTNILLKQWDQLR GS 
Sbjct: 143 AEMYQEYMKQIPIPAHRGSVIPFTSWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRMGSE 202

Query: 121 DEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL 175
           +EY+PLDT+IHP KAEAT+WL+EE+HR TSSH+H+A LWLSDPMH A+VDSIFPQL
Sbjct: 203 EEYRPLDTIIHPCKAEATIWLMEEVHRHTSSHYHIANLWLSDPMHHAFVDSIFPQL 257

[Close]

BLAST of Cla021604 vs. NCBI nr
Match: gi|596187590|ref|XP_007223423.1| (hypothetical protein PRUPE_ppa010153mg [Prunus persica])

HSP 1 Score: 266.9 bits (681), Expect = 2.4e-68
Identity = 129/176 (73.30%), Postives = 148/176 (84.09%), Query Frame = 1


Query: 1   MKRPMPWNEQVDVISSGESSSSDSE--TGVQNDVFEFKPSLDDFKIPAKEMTSEGMLIKR 60
           MKR  PW+EQVDVISS +SSSSD E  T +++D  +   +    + PAKE TSEG L +R
Sbjct: 83  MKRAFPWDEQVDVISSDDSSSSDMEMETNIESDSKQLTNNTTSDQ-PAKERTSEGALTRR 142

Query: 61  AEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRFGSV 120
           AEMYQEYMKQI IPA RGSVIPFT+WMGLGKSIKQLYGQPLHYLTNILLKQWDQLR GS 
Sbjct: 143 AEMYQEYMKQIPIPAHRGSVIPFTSWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRMGSE 202

Query: 121 DEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL 175
           +EY+PLDT+IHP KAEAT+WL+EE+HR TSSH+H+A LWLSDPMH A+VDSIFPQL
Sbjct: 203 EEYRPLDTIIHPCKAEATIWLMEEVHRHTSSHYHIANLWLSDPMHHAFVDSIFPQL 257

[Close]

BLAST of Cla021604 vs. NCBI nr
Match: gi|1009141332|ref|XP_015888137.1| (PREDICTED: protein RDM1 [Ziziphus jujuba])

HSP 1 Score: 262.3 bits (669), Expect = 6.0e-67
Identity = 129/178 (72.47%), Postives = 147/178 (82.58%), Query Frame = 1


Query: 1   MKRPMPWNEQVDVISSG--ESSSSDSETGVQNDVFEFKPSLDDFKI--PAKEMTSEGMLI 60
           MKR +PWNE+VDVISS   ESSS D E  + N     K S DD     P  E+TSEG LI
Sbjct: 1   MKRTVPWNEEVDVISSDSDESSSLDKEVEINNGR-AVKQSTDDMMADHPTIEITSEGSLI 60

Query: 61  KRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRFG 120
           +RAEMYQEYMK+I IP +RGS+IPF+TWMGLGKSIKQLYGQPLHYLTN+LLKQWDQLRF 
Sbjct: 61  RRAEMYQEYMKRIPIPTRRGSIIPFSTWMGLGKSIKQLYGQPLHYLTNVLLKQWDQLRFN 120

Query: 121 SVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL 175
           S DE++PLDT+IHP KAEATVWL+EE+HR TSSH+H+AKLWLSDPMH A+VDSIFPQL
Sbjct: 121 SEDEHRPLDTIIHPCKAEATVWLIEEVHRCTSSHYHIAKLWLSDPMHHAFVDSIFPQL 177

The following BLAST results are available for this feature:

BLAST of Cla021604 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RDM1_ARATH	1.4e-47	57.59	Protein RDM1 OS=Arabidopsis thaliana GN=RDM1 PE=1 SV=1	[more]

BLAST of Cla021604 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L8M0_CUCSA	6.4e-92	94.25	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G146430 PE=4 SV=1	[more]
M5XES6_PRUPE	1.7e-68	73.30	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010153mg PE=4 SV=1	[more]
A0A061EN17_THECC	2.3e-65	69.89	Rna-directed dna methylation 1 isoform 1 OS=Theobroma cacao GN=TCM_020673 PE=4 S...	[more]
A0A0D2VN17_GOSRA	5.1e-65	67.22	Uncharacterized protein OS=Gossypium raimondii GN=B456_011G165600 PE=4 SV=1	[more]
A0A0B0PZ62_GOSAR	5.1e-65	67.22	Protein RDM1-like protein OS=Gossypium arboreum GN=F383_07886 PE=4 SV=1	[more]

BLAST of Cla021604 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659076365\|ref\|XP_008438640.1\|	2.4e-92	95.98	PREDICTED: protein RDM1 [Cucumis melo]	[more]
gi\|449432680\|ref\|XP_004134127.1\|	9.2e-92	94.25	PREDICTED: protein RDM1 [Cucumis sativus]	[more]
gi\|645235451\|ref\|XP_008224276.1\|	8.3e-69	73.30	PREDICTED: protein RDM1 [Prunus mume]	[more]
gi\|596187590\|ref\|XP_007223423.1\|	2.4e-68	73.30	hypothetical protein PRUPE_ppa010153mg [Prunus persica]	[more]
gi\|1009141332\|ref\|XP_015888137.1\|	6.0e-67	72.47	PREDICTED: protein RDM1 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR015270	RDM1

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **Biological Process**
Term	Definition
GO:0044030	regulation of DNA methylation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0070918	production of small RNA involved in gene silencing by RNA
biological_process	GO:0044030	regulation of DNA methylation
cellular_component	GO:0000419	DNA-directed RNA polymerase V complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0043621	protein self-association
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU40639	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla021604	Cla021604.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU40639	WMU40639	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR015270	Protein RDM1	PFAM	PF09187	DUF1950	coord: 55..173 score: 9.6
IPR015270	Protein RDM1	unknown	SSF109920	Hypothetical protein At3g22680	coord: 53..173 score: 8.89
None	No IPR available	PANTHER	PTHR36366	FAMILY NOT NAMED	coord: 2..174 score: 5.9E
None	No IPR available	PANTHER	PTHR36366:SF1	PROTEIN RDM1	coord: 2..174 score: 5.9E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla021604	Cla97C05G086100	Watermelon (97103) v2	wmwmbB206
Cla021604	Csa3G146430	Cucumber (Chinese Long) v2	cuwmB233
Cla021604	MELO3C006513	Melon (DHL92) v3.5.1	mewmB461
Cla021604	ClCG05G004990	Watermelon (Charleston Gray)	wcgwmB286
Cla021604	CSPI03G12920	Wild cucumber (PI 183967)	cpiwmB231
Cla021604	Cucsa.254500	Cucumber (Gy14) v1	cgywmB479
Cla021604	CmaCh14G017300	Cucurbita maxima (Rimu)	cmawmB242
Cla021604	CmaCh06G013920	Cucurbita maxima (Rimu)	cmawmB798
Cla021604	CmaCh00G003620	Cucurbita maxima (Rimu)	cmawmB007
Cla021604	CmoCh14G017690	Cucurbita moschata (Rifu)	cmowmB231
Cla021604	CmoCh06G013970	Cucurbita moschata (Rifu)	cmowmB793
Cla021604	Lsi05G016240	Bottle gourd (USVL1VR-Ls)	lsiwmB365
Cla021604	Cp4.1LG03g10490	Cucurbita pepo (Zucchini)	cpewmB613
Cla021604	Cp4.1LG08g04150	Cucurbita pepo (Zucchini)	cpewmB845
Cla021604	CsGy3G013060	Cucumber (Gy14) v2	cgybwmB217
Cla021604	MELO3C006513.2	Melon (DHL92) v3.6.1	medwmB447
Cla021604	Carg23502	Silver-seed gourd	carwmB0849
Cla021604	Carg06156	Silver-seed gourd	carwmB0961
Cla021604	CsaV3_3G013040	Cucumber (Chinese Long) v3	cucwmB239

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla021604	Cucumber (Gy14) v2	cgybwmB117
Cla021604	Cucumber (Gy14) v2	cgybwmB556
Cla021604	Melon (DHL92) v3.6.1	medwmB228
Cla021604	Melon (DHL92) v3.6.1	medwmB405
Cla021604	Silver-seed gourd	carwmB0110
Cla021604	Silver-seed gourd	carwmB0218
Cla021604	Silver-seed gourd	carwmB0316
Cla021604	Silver-seed gourd	carwmB0751
Cla021604	Silver-seed gourd	carwmB0782
Cla021604	Cucumber (Chinese Long) v3	cucwmB136
Cla021604	Cucumber (Chinese Long) v3	cucwmB621
Cla021604	Watermelon (97103) v2	wmwmbB217
Cla021604	Watermelon (97103) v2	wmwmbB221
Cla021604	Watermelon (97103) v2	wmwmbB232
Cla021604	Wax gourd	wgowmB064
Cla021604	Wax gourd	wgowmB201
Cla021604	Wax gourd	wgowmB270
Cla021604	Wax gourd	wgowmB622
Cla021604	Watermelon (97103) v1	wmwmB021
Cla021604	Watermelon (97103) v1	wmwmB099
Cla021604	Watermelon (97103) v1	wmwmB138
Cla021604	Cucurbita maxima (Rimu)	cmawmB344
Cla021604	Cucurbita maxima (Rimu)	cmawmB346
Cla021604	Cucurbita maxima (Rimu)	cmawmB869
Cla021604	Cucurbita moschata (Rifu)	cmowmB340
Cla021604	Cucurbita moschata (Rifu)	cmowmB342
Cla021604	Cucurbita moschata (Rifu)	cmowmB560
Cla021604	Cucurbita moschata (Rifu)	cmowmB856
Cla021604	Melon (DHL92) v3.5.1	mewmB236
Cla021604	Melon (DHL92) v3.5.1	mewmB414
Cla021604	Watermelon (Charleston Gray)	wcgwmB032
Cla021604	Watermelon (Charleston Gray)	wcgwmB331
Cla021604	Watermelon (Charleston Gray)	wcgwmB382
Cla021604	Cucumber (Chinese Long) v2	cuwmB122
Cla021604	Cucurbita pepo (Zucchini)	cpewmB151
Cla021604	Cucurbita pepo (Zucchini)	cpewmB331
Cla021604	Cucurbita pepo (Zucchini)	cpewmB707
Cla021604	Bottle gourd (USVL1VR-Ls)	lsiwmB017
Cla021604	Bottle gourd (USVL1VR-Ls)	lsiwmB197
Cla021604	Bottle gourd (USVL1VR-Ls)	lsiwmB367