WMU40639 (transcribed_cluster) Watermelon (97103) v1

NameWMU40639
Typetranscribed_cluster
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionRNA-directed DNA methylation 1
LocationChr5 : 4619734 .. 4620156 (-)
Sequence length425
The following sequences are available for this feature:

transcribed_cluster sequence

AGCAACTGTATGGCTGGTTGAAGAGATTCATAGGCGTACCTCATCACATCATCATGTTGCTAAACTCTGGTTATCAGACCCAATGCACGAAGCGTATGTTGACTCCATTTTCCCCCAACTATGAAGGCTGCTTTCAGTTATGTTCTGCGCTGTGTTGATATACTATAACATATTTCTAGAAGGCTAACATGTCAGTGACAATGTGAATTGTAATAGAAACAGCATAGTTCTTTTGGCACATTCAACTTTAATGTGTAGGTTTCTTATAAACTGACAGGGAAGAAGCTCCAGCATTGCTTCTTCTGTCATTGTTGCCATTTGTCTGTTCACTAGTTGACTGCATTTACTTTTGTAGCAAAGAACGAATGTAAATCAATATCGAAAATGCATATTTTATCATACAGTTCTTTCCTATCTGAGAAACC
BLAST of WMU40639 vs. TAIR10
Match: AT3G22680.1 (AT3G22680.1 RNA-DIRECTED DNA METHYLATION 1)

HSP 1 Score: 61.6 bits (148), Expect = 4.4e-10
Identity = 25/39 (64.10%), Postives = 30/39 (76.92%), Query Frame = 2

Query: 2   ATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQ 61
           AT+WLVEEIHR T SH H+A LW SDPM+ +++D IFP+
Sbjct: 124 ATIWLVEEIHRLTPSHLHMALLWRSDPMYHSFIDPIFPE 162

Query: 62  119
           
Sbjct: 184 162

BLAST of WMU40639 vs. Swiss-Prot
Match: RDM1_ARATH (Protein RDM1 OS=Arabidopsis thaliana GN=RDM1 PE=1 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 7.9e-09
Identity = 25/39 (64.10%), Postives = 30/39 (76.92%), Query Frame = 2

Query: 2   ATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQ 61
           AT+WLVEEIHR T SH H+A LW SDPM+ +++D IFP+
Sbjct: 124 ATIWLVEEIHRLTPSHLHMALLWRSDPMYHSFIDPIFPE 162

Query: 62  119
           
Sbjct: 184 162

BLAST of WMU40639 vs. NCBI nr
Match: gi|659076365|ref|XP_008438640.1| (PREDICTED: protein RDM1 [Cucumis melo])

HSP 1 Score: 89.0 bits (219), Expect = 7.3e-15
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 2

Query: 2   ATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL 61
           ATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
Sbjct: 135 ATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL 174

Query: 62  121
           
Sbjct: 195 174

BLAST of WMU40639 vs. NCBI nr
Match: gi|449432680|ref|XP_004134127.1| (PREDICTED: protein RDM1 [Cucumis sativus])

HSP 1 Score: 87.8 bits (216), Expect = 1.6e-14
Identity = 39/40 (97.50%), Postives = 40/40 (100.00%), Query Frame = 2

Query: 2   ATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL 61
           ATVWLVEEIHRRTSSHHHVAKLWLSDPMH+AYVDSIFPQL
Sbjct: 135 ATVWLVEEIHRRTSSHHHVAKLWLSDPMHQAYVDSIFPQL 174

Query: 62  121
           
Sbjct: 195 174

BLAST of WMU40639 vs. NCBI nr
Match: gi|802581368|ref|XP_012069678.1| (PREDICTED: protein RDM1 [Jatropha curcas])

HSP 1 Score: 81.3 bits (199), Expect = 1.5e-12
Identity = 35/40 (87.50%), Postives = 37/40 (92.50%), Query Frame = 2

Query: 2   ATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL 61
           AT+WLVEEIHRRTSSHHHVAKLWL DPMH  +VDSIFPQL
Sbjct: 136 ATIWLVEEIHRRTSSHHHVAKLWLLDPMHHTFVDSIFPQL 175

Query: 62  121
           
Sbjct: 196 175

BLAST of WMU40639 vs. NCBI nr
Match: gi|224099821|ref|XP_002311634.1| (hypothetical protein POPTR_0008s15560g [Populus trichocarpa])

HSP 1 Score: 80.1 bits (196), Expect = 3.4e-12
Identity = 33/40 (82.50%), Postives = 38/40 (95.00%), Query Frame = 2

Query: 2   ATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL 61
           AT+WLVEE+HRRTSSHHHVAK+W SDPMH A+VDSIFP+L
Sbjct: 136 ATIWLVEEVHRRTSSHHHVAKIWQSDPMHHAFVDSIFPKL 175

Query: 62  121
           
Sbjct: 196 175

BLAST of WMU40639 vs. NCBI nr
Match: gi|743786108|ref|XP_011026891.1| (PREDICTED: protein RDM1 [Populus euphratica])

HSP 1 Score: 80.1 bits (196), Expect = 3.4e-12
Identity = 33/40 (82.50%), Postives = 38/40 (95.00%), Query Frame = 2

Query: 2   ATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL 61
           AT+WLVEE+HRRTSSHHHVAK+W SDPMH A+VDSIFP+L
Sbjct: 136 ATIWLVEEVHRRTSSHHHVAKIWQSDPMHHAFVDSIFPKL 175

Query: 62  121
           
Sbjct: 196 175

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
AT3G22680.14.4e-1064.10 RNA-DIRECTED DNA METHYLATION 1[more]
Match NameE-valueIdentityDescription
RDM1_ARATH7.9e-0964.10Protein RDM1 OS=Arabidopsis thaliana GN=RDM1 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
gi|659076365|ref|XP_008438640.1|7.3e-15100.00PREDICTED: protein RDM1 [Cucumis melo][more]
gi|449432680|ref|XP_004134127.1|1.6e-1497.50PREDICTED: protein RDM1 [Cucumis sativus][more]
gi|802581368|ref|XP_012069678.1|1.5e-1287.50PREDICTED: protein RDM1 [Jatropha curcas][more]
gi|224099821|ref|XP_002311634.1|3.4e-1282.50hypothetical protein POPTR_0008s15560g [Populus trichocarpa][more]
gi|743786108|ref|XP_011026891.1|3.4e-1282.50PREDICTED: protein RDM1 [Populus euphratica][more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Cla021604Cla021604gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
S1_0048348S1_0048348EST
S1_0061973S1_0061973EST
S2_0036770S2_0036770EST
S3_0041571S3_0041571EST
S3_0065992S3_0065992EST
S3_0076203S3_0076203EST