Cp4.1LG08g04150 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG08g04150
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionRNA-directed DNA methylation 1
LocationCp4.1LG08 : 1756991 .. 1761264 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GCCCACTTCAAAATACCATAAGGTGTTTGATACTGCGCAAGCCATTCCATCCAAAGCTTCTGCAACGTTTTCGAGCTCGTTGGATTCGTTACTGAGCTCTGCTGAGTATCCGTGGCGGAATCCAGATCGCAAAGAGTTTCGGCTTTACGATTCGAAGCTCTCCCTCTTTTCTCAAAATACGAAGGTACATCATGATCACTCTGACTTCCCATTTATCCATTACCATCTCTGTTCTTCCATTTTGTTTGTTTGAGATGTCAATTGTTATTGGATATCATCCTGTGTGTGGATTTTCCAGAATGTTGCTTCGTTGATTGATGCAGTGTCGTAATAGAGTTTCATTAGTTCTTAGAGATTGCCCTAGATATTGATGGTAATTGAGGGTAGTAATAATCTGAGGTTGTTCCTTAGCAGAAACTGAGTGCATTGCTTCATAAATTGCATGTGCGAGGTGTTCTTTGGGAATGGAGAGATAGTGATGGCTCAATGCGGTGATTAGTTCCAATTCTGTGATTAAGTTTTGTTATGAACATGAGATTGAAAGTTTAAAGCTGTTATTTATTAGTAACCATGATATTTTTTCTCCAGAGTTCCATTCTTTACAAAATGAAGAGGCCAATGCCATGGAATGAACAGGTAGATGTTATATCATCAGGTGAATCTTCTTCCTCTGATTCAGAAATAGGGGGACAAAATGATGGATTTGAGTTCAAGCCCTCCATTGACGACTTCAAAATTCCTGCAAAGGAGATGACATCTGATGGTAATTTGATCTTTGTCTTTGTTACACCAACAGTTTGAAGTACTTCGTGAGATAAATTTATAGTTTTTATATATAAATTTTCAAATTCATAAGCTTTGGAAAAGAGGATCTTCTGTGAAATGTCATCTAATGATATGCAGGCATGTTGATTAAAAGGGCAGAAATGTATCAAGAATACATGAAACAGATCCCGATCCCGGCACACCGTGGATCTGTTATACCGTTTACAACATGGATGGGACTAGGAAAATCTATAAAGCAACTTTATGAACAGCCTTTGCATTACCTGACTAACATTCAGCTCAAACAGTGGGATCAATTAAGATTCGGAAGTGTGGATGAATATAAGCCATTGGATACCATAATTCATCCGAGTAAAGCTGAAGCAACCGTATGGCTGGTTGAAGAGATTCATCGGCGCACCTCGTCACATCATCATGTTGCTAAGCTCTGGTTATCAGACTCGATGCACGAAGTGTATGTTGACTCCATTTTCCCCCAACTATGAAAGCTGCTGCTCTCAGTTAAGTTCTGTTCTGTGCTGATATTATAACATATTTCTAGTAGACTAACTTGTCATTGACAATGTGAATCGTAATAGAAACAACATAGTTCTTTAGTCACACTGCTCTTGAATGTGTAGGTTTCTTATCAACTGACATAGAACATGCTCTACCATTGCTTCTTCTGTCCATTGTTGTGTCTATCTGTGAAGTAGTTGATTGCATTTACTTTTGTAGCTTACAGATAGAAAAGCAATCTTAAGTTTCACAGAGATCGAATATAAATCAATAGTGAAGATGCATAGTTTCTTTTACAATTCTTTCCTATCTGAGAATTATGTTACCAATAATCACCACACGAACAAGACCCATGTCGAAAGAAGTGAAACCGATTATTATCTCGTATTGTTATTTCCCTATCATACACTTTTGAAACGTATTTGGCAAATGCATGACAGTCTGAGCACGTTCTGAGATTCTTAATGACACGAATAGGCAGGTGTTTTTTTGTACTTATAAGCCCGTAAGCCATCGCCAGCTTCTCGCTATGCTGATTGAGTAGATATTGTTTCTCCTGATCATTTACATCAAGCAGAACATTGGTTAAATCAGGAACATAGCCAGCATCCCCCAGCCTGTTGTTGATTTCTTTCAACATCATGTCAATGTGACAAGTTTCTGGGTGTGATCTGTCGCCCGAGGTAAATTCATGAATAACTCCATCGACTTCGATTGAGCTCGAACCAGGCGTTTTTCTAACTCCTTTCTCCTTTAAATGTAGCCTCACGTTAGCAACATCAGCCCACTGTTCAGCCGACGCATATATGTTTGATAGAAGCACATGAATCCCAGTCCTTTCTGGAGCTGTTTCTGCCAACCTTTCAGCTGCAAATGTAGCCAGTTCGACGTTTTTATGAGTACGACACGCAGCCAATAGAGATCCCCATATAATTCCATTGGGTTTCATTGACATGCTCTTTATAATGTCAAGAGCTTCTTCTAACTTGCCTGCACGGCCTAATAGATCAACCATGCAACCATAATGAACAATCTGTGGGGAGATTCCATGTTGCTTCATTGACTCGAATATGTGCTGCCCTTGTTCCACAAAACCACCATGGCTACAAGCTGTTAATATGTTCACAAAAACTACTTGATCAGGTTGCACCCCTTGTCTTAGCATCTCACTGTAAAGTTCTATAGCTCTCTCTCCATTCCCATCCACAGCCATTGCTCCAATGGCTGCTGTCCATGCCGAGACGTCTTTTCTATCCATATTGTCGAACACTTTCATCGCACTACGAGAGTCACCACACCTAGCAAACATATCGACTAAGGCTGTCTCAAGCAACATATCACAGTCGATATTGTTCTTTATGATATATGCATATATCCATTTGGCGAGTTCGAGAGCTCCTAGATATCCACAGGCAGATGCAACTTCTACCATCGTCACCCTGTCTGCTTCTATTTCCTTTGTTTGCATTTCTCGAAAGAGTTCAATTGCTTCATCGAACATACTCTCTTGAATCAAAGCACTAACCATTGTGTTCCAAGATACTATGTCCTTTTCAGGCATCGCGTTGAATATCTTCTTAGTTGACTCTAAATCTCTGTTTCTAACATAACTAACAAGTAATGAGTTCCATGACACAGTGGTCTTATTTGACATACCGTCGAAAACTTTGTAGGCCATTTCTTGTTTGCCACACTTCATATACATGTCAATCATTGCATTGCAAATGTTATCCCAACCTTCGTACCCGTTTCTTAGAGCAAAACTATGGCAGCACCTCCCAAGTAGATAGTCTCCCATCTGCCCACATGCTGAGATTGCTGATAACAACGAAACTCTATCCGGTCGAAGATCTACCTGAAACATATCTACCAAGACAGCAAGTACCTCTTTCGGCATGCCATGGCGTGCCAAATTTGACATGATCGTGTTACACAAAACCAAATTCTTATCAACACATTCATTATATAGTAGCCTAGCAGCACCAGGTTCTCCACATTTCATGTACATATCCACAAGTGCATTCACCATATGAGTATTAAGCTCCACTTCTGACTCTTTGATATAAGCATGAATTTTCATGGCCAGTTCAAGATCTTTCAACTTGGAACAAGCTGATATCACACACACCATTGTGACAGAATTGGGTCTAACGCCTGCCTCGATCATTTGGAAAAACAAAGCCACGGCCTCACTGGAAGAATCTGACCTAGCGTAGCCACAAATCAAGCTGGTCCATGAAACAACATTTCTCTCGGGCATTTCATCAAACACCTTCCGAGCAGACGAAAAATCTCGTGCTTCTGCATACAGATGTATCAGAGAATTAGCAACAAACATATTTCCTTCCAAACCAATCTTCATAAGAGCTCCATGGAGTTGAACCCCTCCTGAAAATGCAGCAGTCTTTGCACACGCACTTAACAAAAATGGAAATGTGAAGTTGTCTGGCATAAACCCAGTCTCGATCATCTGAATGTACAATGAAACAGCTTCATCACAAAGCCCTGAAGCAGAGTATCCCCTAATTAACGAATTGTAGATGAAAACAGTAACAGTTGCTTCGTCCTCTTCCTGGAAGAGCTCGAATACCTTTCGAGCATAATCCAAGCTTTCTAAAGTGCCCATTTCCACGCAAGTGGAAATCAACTTAGTTACAGTTGATTGTTTACGAATGAGACCCTGCTTCGACGCGTAGCAGTGCAATTGTCGAAGTTCATCCATGGTTTTGCAGTTTTGGAACAACCCAATTTGAAAACGGTGGGAAGCGATATGCTTTGAGTCATTCTGAGCGGTGGGTATGATGAAGCTCGGCGTCACAGAGACGGTTGTATGAAGATTTGCCGCCATTACGGTGTGTCAGTTGTTGCACTGTGAAGCTACCCACTTTGTTTTGGATGAAGAATTGACTCAGAGATTTCGCCACACATGCTCAAGGACTTTGAGATTGGTCGCCCAACGGAGCTACCTTTTGTTTGTTTTCTCTGTTTCG

mRNA sequence

GCCCACTTCAAAATACCATAAGGTGTTTGATACTGCGCAAGCCATTCCATCCAAAGCTTCTGCAACGTTTTCGAGCTCGTTGGATTCGTTACTGAGCTCTGCTGAGTATCCGTGGCGGAATCCAGATCGCAAAGAGTTTCGGCTTTACGATTCGAAGCTCTCCCTCTTTTCTCAAAATACGAAGAGTTCCATTCTTTACAAAATGAAGAGGCCAATGCCATGGAATGAACAGGTAGATGTTATATCATCAGGTGAATCTTCTTCCTCTGATTCAGAAATAGGGGGACAAAATGATGGATTTGAGTTCAAGCCCTCCATTGACGACTTCAAAATTCCTGCAAAGGAGATGACATCTGATGGCATGTTGATTAAAAGGGCAGAAATGTATCAAGAATACATGAAACAGATCCCGATCCCGGCACACCGTGGATCTGTTATACCGTTTACAACATGGATGGGACTAGGAAAATCTATAAAGCAACTTTATGAACAGCCTTTGCATTACCTGACTAACATTCAGCTCAAACAGTGGGATCAATTAAGATTCGGAAGTGTGGATGAATATAAGCCATTGGATACCATAATTCATCCGAGTAAAGCTGAAGCAACCGTATGGCTGGTTGAAGAGATTCATCGGCGCACCTCGTCACATCATCATGTTGCTAAGCTCTGGTTATCAGACTCGATGCACGAAGTGTATGTTGACTCCATTTTCCCCCAACTATGAAAGCTGCTGCTCTCAGGCAGGTGTTTTTTTGTACTTATAAGCCCGTAAGCCATCGCCAGCTTCTCGCTATGCTGATTGAGTAGATATTGTTTCTCCTGATCATTTACATCAAGCAGAACATTGGTTAAATCAGGAACATAGCCAGCATCCCCCAGCCTGTTGTTGATTTCTTTCAACATCATGTCAATGTGACAAGTTTCTGGGTGTGATCTGTCGCCCGAGCCTCACGTTAGCAACATCAGCCCACTGTTCAGCCGACGCATATATGTTTGATAGAAGCACATGAATCCCAGTCCTTTCTGGAGCTGTTTCTGCCAACCTTTCAGCTGCAAATGTAGCCAGTTCGACGTTTTTATGAGTACGACACGCAGCCAATAGAGATCCCCATATAATTCCATTGGGTTTCATTGACATGCTCTTTATAATGTCAAGAGCTTCTTCTAACTTGCCTGCACGGCCTAATAGATCAACCATGCAACCATAATGAACAATCTGTGGGGAGATTCCATGTTGCTTCATTGACTCGAATATGTGCTGCCCTTGTTCCACAAAACCACCATGGCTACAAGCTGTTAATATGTTCACAAAAACTACTTGATCAGGTTGCACCCCTTGTCTTAGCATCTCACTGTAAAGTTCTATAGCTCTCTCTCCATTCCCATCCACAGCCATTGCTCCAATGGCTGCTGTCCATGCCGAGACGTCTTTTCTATCCATATTGTCGAACACTTTCATCGCACTACGAGAGTCACCACACCTAGCAAACATATCGACTAAGGCTGTCTCAAGCAACATATCACAGTCGATATTGTTCTTTATGATATATGCATATATCCATTTGGCGAGTTCGAGAGCTCCTAGATATCCACAGGCAGATGCAACTTCTACCATCGTCACCCTGTCTGCTTCTATTTCCTTTGTTTGCATTTCTCGAAAGAGTTCAATTGCTTCATCGAACATACTCTCTTGAATCAAAGCACTAACCATTGTGTTCCAAGATACTATGTCCTTTTCAGGCATCGCGTTGAATATCTTCTTAGTTGACTCTAAATCTCTGTTTCTAACATAACTAACAAGTAATGAGTTCCATGACACAGTGGTCTTATTTGACATACCGTCGAAAACTTTGTAGGCCATTTCTTGTTTGCCACACTTCATATACATGTCAATCATTGCATTGCAAATGTTATCCCAACCTTCGTACCCGTTTCTTAGAGCAAAACTATGGCAGCACCTCCCAAGTAGATAGTCTCCCATCTGCCCACATGCTGAGATTGCTGATAACAACGAAACTCTATCCGGTCGAAGATCTACCTGAAACATATCTACCAAGACAGCAAGTACCTCTTTCGGCATGCCATGGCGTGCCAAATTTGACATGATCGTGTTACACAAAACCAAATTCTTATCAACACATTCATTATATAGTAGCCTAGCAGCACCAGGTTCTCCACATTTCATGTACATATCCACAAGTGCATTCACCATATGAGTATTAAGCTCCACTTCTGACTCTTTGATATAAGCATGAATTTTCATGGCCAGTTCAAGATCTTTCAACTTGGAACAAGCTGATATCACACACACCATTGTGACAGAATTGGGTCTAACGCCTGCCTCGATCATTTGGAAAAACAAAGCCACGGCCTCACTGGAAGAATCTGACCTAGCGTAGCCACAAATCAAGCTGGTCCATGAAACAACATTTCTCTCGGGCATTTCATCAAACACCTTCCGAGCAGACGAAAAATCTCGTGCTTCTGCATACAGATGTATCAGAGAATTAGCAACAAACATATTTCCTTCCAAACCAATCTTCATAAGAGCTCCATGGAGTTGAACCCCTCCTGAAAATGCAGCAGTCTTTGCACACGCACTTAACAAAAATGGAAATGTGAAGTTGTCTGGCATAAACCCAGTCTCGATCATCTGAATGTACAATGAAACAGCTTCATCACAAAGCCCTGAAGCAGAGTATCCCCTAATTAACGAATTGTAGATGAAAACAGTAACAGTTGCTTCGTCCTCTTCCTGGAAGAGCTCGAATACCTTTCGAGCATAATCCAAGCTTTCTAAAGTGCCCATTTCCACGCAAGTGGAAATCAACTTAGTTACAGTTGATTGTTTACGAATGAGACCCTGCTTCGACGCGTAGCAGTGCAATTGTCGAAGTTCATCCATGGTTTTGCAGTTTTGGAACAACCCAATTTGAAAACGGTGGGAAGCGATATGCTTTGAGTCATTCTGAGCGGTGGGTATGATGAAGCTCGGCGTCACAGAGACGGTTGTATGAAGATTTGCCGCCATTACGGTGTGTCAGTTGTTGCACTGTGAAGCTACCCACTTTGTTTTGGATGAAGAATTGACTCAGAGATTTCGCCACACATGCTCAAGGACTTTGAGATTGGTCGCCCAACGGAGCTACCTTTTGTTTGTTTTCTCTGTTTCG

Coding sequence (CDS)

ATGAAGAGGCCAATGCCATGGAATGAACAGGTAGATGTTATATCATCAGGTGAATCTTCTTCCTCTGATTCAGAAATAGGGGGACAAAATGATGGATTTGAGTTCAAGCCCTCCATTGACGACTTCAAAATTCCTGCAAAGGAGATGACATCTGATGGCATGTTGATTAAAAGGGCAGAAATGTATCAAGAATACATGAAACAGATCCCGATCCCGGCACACCGTGGATCTGTTATACCGTTTACAACATGGATGGGACTAGGAAAATCTATAAAGCAACTTTATGAACAGCCTTTGCATTACCTGACTAACATTCAGCTCAAACAGTGGGATCAATTAAGATTCGGAAGTGTGGATGAATATAAGCCATTGGATACCATAATTCATCCGAGTAAAGCTGAAGCAACCGTATGGCTGGTTGAAGAGATTCATCGGCGCACCTCGTCACATCATCATGTTGCTAAGCTCTGGTTATCAGACTCGATGCACGAAGTGTATGTTGACTCCATTTTCCCCCAACTATGA

Protein sequence

MKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDDFKIPAKEMTSDGMLIKRAEMYQEYMKQIPIPAHRGSVIPFTTWMGLGKSIKQLYEQPLHYLTNIQLKQWDQLRFGSVDEYKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQL
Homology
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BLAST of Cp4.1LG08g04150 vs. Swiss-Prot
Match: RDM1_ARATH (Protein RDM1 OS=Arabidopsis thaliana GN=RDM1 PE=1 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 1.3e-45
Identity = 86/158 (54.43%), Postives = 114/158 (72.15%), Query Frame = 1 

Query: 16  SGESSSSDSEIGGQNDGFEFKPSIDDFKIPAKEMTSDGMLIKRAEMYQEYMKQIPIPAHR 75
           SG+S SSD +        E            +++  +G L++RAEMYQ+YMKQ+PIP +R
Sbjct: 12  SGDSGSSDVDA-------EISDGFSPLDTSHRDVADEGSLLRRAEMYQDYMKQVPIPTNR 71

Query: 76  GSVIPFTTWMGLGKSIKQLYEQPLHYLTNIQLKQWDQLRFGSVDEYKPLDTIIHPSKAEA 135
           GS+IPFT+W+GL  S+KQLY QPLHYLTN+ L++WDQ RFG+  E + LD+IIHP+KAEA
Sbjct: 72  GSLIPFTSWVGLSISMKQLYGQPLHYLTNVLLQRWDQSRFGTDSEEQRLDSIIHPTKAEA 131

Query: 136 TVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQ 174
           T+WLVEEIHR T SH H+A LW SD M+  ++D IFP+
Sbjct: 132 TIWLVEEIHRLTPSHLHMALLWRSDPMYHSFIDPIFPE 162

[Close]
BLAST of Cp4.1LG08g04150 vs. TrEMBL
Match: A0A0A0L8M0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G146430 PE=4 SV=1)

HSP 1 Score: 328.6 bits (841), Expect = 4.7e-87
Identity = 156/174 (89.66%), Postives = 163/174 (93.68%), Query Frame = 1 

Query: 1   MKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDDFKIPAKEMTSDGMLIKRAE 60
           MKRPMPWNEQVD+ISSGESSSSDSE   QNDG+EFKPS+DDFKIPAKEMTS+GML+KRAE
Sbjct: 1   MKRPMPWNEQVDIISSGESSSSDSEAAIQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAE 60

Query: 61  MYQEYMKQIPIPAHRGSVIPFTTWMGLGKSIKQLYEQPLHYLTNIQLKQWDQLRFGSVDE 120
           MYQEYMKQI IPA RGSVIPFTTWMGLGKSIKQLY QPLHYLTNI LKQWDQLR GS DE
Sbjct: 61  MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRLGSADE 120

Query: 121 YKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQL 175
           YKPLDT+IHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSD MH+ YVDSIFPQL
Sbjct: 121 YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHQAYVDSIFPQL 174

[Close]
BLAST of Cp4.1LG08g04150 vs. TrEMBL
Match: M5XES6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010153mg PE=4 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 4.6e-66
Identity = 126/176 (71.59%), Postives = 145/176 (82.39%), Query Frame = 1 

Query: 1   MKRPMPWNEQVDVISSGESSSSDSEIGG--QNDGFEFKPSIDDFKIPAKEMTSDGMLIKR 60
           MKR  PW+EQVDVISS +SSSSD E+    ++D  +   +    + PAKE TS+G L +R
Sbjct: 83  MKRAFPWDEQVDVISSDDSSSSDMEMETNIESDSKQLTNNTTSDQ-PAKERTSEGALTRR 142

Query: 61  AEMYQEYMKQIPIPAHRGSVIPFTTWMGLGKSIKQLYEQPLHYLTNIQLKQWDQLRFGSV 120
           AEMYQEYMKQIPIPAHRGSVIPFT+WMGLGKSIKQLY QPLHYLTNI LKQWDQLR GS 
Sbjct: 143 AEMYQEYMKQIPIPAHRGSVIPFTSWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRMGSE 202

Query: 121 DEYKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQL 175
           +EY+PLDTIIHP KAEAT+WL+EE+HR TSSH+H+A LWLSD MH  +VDSIFPQL
Sbjct: 203 EEYRPLDTIIHPCKAEATIWLMEEVHRHTSSHYHIANLWLSDPMHHAFVDSIFPQL 257

[Close]
BLAST of Cp4.1LG08g04150 vs. TrEMBL
Match: W9QYP0_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_009096 PE=4 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 1.9e-64
Identity = 125/185 (67.57%), Postives = 150/185 (81.08%), Query Frame = 1 

Query: 1   MKRPMPWNEQVDVISSGESSSS-DSEI-------GGQ---NDGFEFKPSIDDFKIPAKEM 60
           M++ +PWNEQVDVISS ESSSS DSEI       G Q   ND  + +P+      P K++
Sbjct: 1   MEKGIPWNEQVDVISSDESSSSSDSEIEVRDSHSGKQLLTNDAID-QPTTHVLDQPLKDI 60

Query: 61  TSDGMLIKRAEMYQEYMKQIPIPAHRGSVIPFTTWMGLGKSIKQLYEQPLHYLTNIQLKQ 120
           TS+G LIKRAE+YQ+YMKQIPIP HRGS+IPFT+WMGLGKSIKQ+Y QPLHYLTN+QLK 
Sbjct: 61  TSEGTLIKRAELYQDYMKQIPIPTHRGSLIPFTSWMGLGKSIKQMYGQPLHYLTNVQLKH 120

Query: 121 WDQLRFGSVDEYKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDS 175
           WDQLR GS +E +PLDTI+HPSKAEAT+WL+EE+HRRT+SH+H+AKLWL D MH  +VDS
Sbjct: 121 WDQLRIGSEEEDRPLDTIVHPSKAEATIWLLEEVHRRTTSHYHIAKLWLLDPMHHAFVDS 180

[Close]
BLAST of Cp4.1LG08g04150 vs. TrEMBL
Match: V4S8L1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10005993mg PE=4 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 1.6e-63
Identity = 117/172 (68.02%), Postives = 141/172 (81.98%), Query Frame = 1 

Query: 1   MKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDDFKI--PAKEMTSDGMLIKR 60
           MKRPMPW +QVDVISS +S+S     G  ++G + + S +D  I  P KE+TS+G L +R
Sbjct: 1   MKRPMPWGDQVDVISSDDSASD----GDADNGLDGRQSSNDMTIDQPTKELTSEGSLFRR 60

Query: 61  AEMYQEYMKQIPIPAHRGSVIPFTTWMGLGKSIKQLYEQPLHYLTNIQLKQWDQLRFGSV 120
           AEMYQEYMKQ+PIP  R S+IPFT+W+GLG SIKQLYEQPLHYLTNI LKQWDQLRFG+ 
Sbjct: 61  AEMYQEYMKQLPIPTQRSSIIPFTSWVGLGNSIKQLYEQPLHYLTNIHLKQWDQLRFGTE 120

Query: 121 DEYKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSI 171
           DE+KPLD+I+HP KAEATVWL+EE+HR TS HHH+AKLWLSD MH V++DSI
Sbjct: 121 DEHKPLDSIVHPCKAEATVWLIEEVHRLTSCHHHLAKLWLSDPMHYVFIDSI 168

[Close]
BLAST of Cp4.1LG08g04150 vs. TrEMBL
Match: A0A067G7B7_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g028897mg PE=4 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 2.8e-63
Identity = 116/172 (67.44%), Postives = 141/172 (81.98%), Query Frame = 1 

Query: 1   MKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDDFKI--PAKEMTSDGMLIKR 60
           MKRPMPW +QVDVISS +S+S     G  ++G + + S +D  I  P KE+TS+G L +R
Sbjct: 1   MKRPMPWGDQVDVISSDDSASD----GDADNGLDGRQSSNDMTIDQPTKELTSEGSLFRR 60

Query: 61  AEMYQEYMKQIPIPAHRGSVIPFTTWMGLGKSIKQLYEQPLHYLTNIQLKQWDQLRFGSV 120
           AEMYQEYMKQ+PIP  R S+IPFT+W+GLG SIKQLYEQPLHYLTNI LKQWDQLRFG+ 
Sbjct: 61  AEMYQEYMKQLPIPTQRSSIIPFTSWVGLGNSIKQLYEQPLHYLTNIHLKQWDQLRFGTE 120

Query: 121 DEYKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSI 171
           DE+KPLD+++HP KAEATVWL+EE+HR TS HHH+AKLWLSD MH V++DSI
Sbjct: 121 DEHKPLDSLVHPCKAEATVWLIEEVHRLTSCHHHLAKLWLSDPMHYVFIDSI 168

[Close]
BLAST of Cp4.1LG08g04150 vs. TAIR10
Match: AT3G22680.1 (AT3G22680.1 RNA-DIRECTED DNA METHYLATION 1)

HSP 1 Score: 184.1 bits (466), Expect = 7.3e-47
Identity = 86/158 (54.43%), Postives = 114/158 (72.15%), Query Frame = 1 

Query: 16  SGESSSSDSEIGGQNDGFEFKPSIDDFKIPAKEMTSDGMLIKRAEMYQEYMKQIPIPAHR 75
           SG+S SSD +        E            +++  +G L++RAEMYQ+YMKQ+PIP +R
Sbjct: 12  SGDSGSSDVDA-------EISDGFSPLDTSHRDVADEGSLLRRAEMYQDYMKQVPIPTNR 71

Query: 76  GSVIPFTTWMGLGKSIKQLYEQPLHYLTNIQLKQWDQLRFGSVDEYKPLDTIIHPSKAEA 135
           GS+IPFT+W+GL  S+KQLY QPLHYLTN+ L++WDQ RFG+  E + LD+IIHP+KAEA
Sbjct: 72  GSLIPFTSWVGLSISMKQLYGQPLHYLTNVLLQRWDQSRFGTDSEEQRLDSIIHPTKAEA 131

Query: 136 TVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQ 174
           T+WLVEEIHR T SH H+A LW SD M+  ++D IFP+
Sbjct: 132 TIWLVEEIHRLTPSHLHMALLWRSDPMYHSFIDPIFPE 162

[Close]
BLAST of Cp4.1LG08g04150 vs. NCBI nr
Match: gi|659076365|ref|XP_008438640.1| (PREDICTED: protein RDM1 [Cucumis melo])

HSP 1 Score: 330.5 bits (846), Expect = 1.8e-87
Identity = 158/174 (90.80%), Postives = 163/174 (93.68%), Query Frame = 1 

Query: 1   MKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDDFKIPAKEMTSDGMLIKRAE 60
           MKRPMPWNEQVDVISSGESSSSDSE   QNDG+EFKPS+DDFKIPAKEMTS+GML+KRAE
Sbjct: 1   MKRPMPWNEQVDVISSGESSSSDSEAAVQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAE 60

Query: 61  MYQEYMKQIPIPAHRGSVIPFTTWMGLGKSIKQLYEQPLHYLTNIQLKQWDQLRFGSVDE 120
           MYQEYMKQI IPA RGSVIPFTTWMGLGKSIKQLY QPLHYLTNI LKQWDQLR GS DE
Sbjct: 61  MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRLGSADE 120

Query: 121 YKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQL 175
           YKPLDT+IHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSD MHE YVDSIFPQL
Sbjct: 121 YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL 174

[Close]
BLAST of Cp4.1LG08g04150 vs. NCBI nr
Match: gi|449432680|ref|XP_004134127.1| (PREDICTED: protein RDM1 [Cucumis sativus])

HSP 1 Score: 328.6 bits (841), Expect = 6.8e-87
Identity = 156/174 (89.66%), Postives = 163/174 (93.68%), Query Frame = 1 

Query: 1   MKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDDFKIPAKEMTSDGMLIKRAE 60
           MKRPMPWNEQVD+ISSGESSSSDSE   QNDG+EFKPS+DDFKIPAKEMTS+GML+KRAE
Sbjct: 1   MKRPMPWNEQVDIISSGESSSSDSEAAIQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAE 60

Query: 61  MYQEYMKQIPIPAHRGSVIPFTTWMGLGKSIKQLYEQPLHYLTNIQLKQWDQLRFGSVDE 120
           MYQEYMKQI IPA RGSVIPFTTWMGLGKSIKQLY QPLHYLTNI LKQWDQLR GS DE
Sbjct: 61  MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRLGSADE 120

Query: 121 YKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQL 175
           YKPLDT+IHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSD MH+ YVDSIFPQL
Sbjct: 121 YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHQAYVDSIFPQL 174

[Close]
BLAST of Cp4.1LG08g04150 vs. NCBI nr
Match: gi|645235451|ref|XP_008224276.1| (PREDICTED: protein RDM1 [Prunus mume])

HSP 1 Score: 260.4 bits (664), Expect = 2.3e-66
Identity = 126/176 (71.59%), Postives = 146/176 (82.95%), Query Frame = 1 

Query: 1   MKRPMPWNEQVDVISSGESSSSDSEIGG--QNDGFEFKPSIDDFKIPAKEMTSDGMLIKR 60
           MKR  PW+EQVDVISS +SSSSD E+    ++D  +   +    + PAKE TS+G L++R
Sbjct: 83  MKRAFPWDEQVDVISSDDSSSSDMEMETNIESDSKQLTNNTTSDQ-PAKERTSEGALVRR 142

Query: 61  AEMYQEYMKQIPIPAHRGSVIPFTTWMGLGKSIKQLYEQPLHYLTNIQLKQWDQLRFGSV 120
           AEMYQEYMKQIPIPAHRGSVIPFT+WMGLGKSIKQLY QPLHYLTNI LKQWDQLR GS 
Sbjct: 143 AEMYQEYMKQIPIPAHRGSVIPFTSWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRMGSE 202

Query: 121 DEYKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQL 175
           +EY+PLDTIIHP KAEAT+WL+EE+HR TSSH+H+A LWLSD MH  +VDSIFPQL
Sbjct: 203 EEYRPLDTIIHPCKAEATIWLMEEVHRHTSSHYHIANLWLSDPMHHAFVDSIFPQL 257

[Close]
BLAST of Cp4.1LG08g04150 vs. NCBI nr
Match: gi|596187590|ref|XP_007223423.1| (hypothetical protein PRUPE_ppa010153mg [Prunus persica])

HSP 1 Score: 258.8 bits (660), Expect = 6.6e-66
Identity = 126/176 (71.59%), Postives = 145/176 (82.39%), Query Frame = 1 

Query: 1   MKRPMPWNEQVDVISSGESSSSDSEIGG--QNDGFEFKPSIDDFKIPAKEMTSDGMLIKR 60
           MKR  PW+EQVDVISS +SSSSD E+    ++D  +   +    + PAKE TS+G L +R
Sbjct: 83  MKRAFPWDEQVDVISSDDSSSSDMEMETNIESDSKQLTNNTTSDQ-PAKERTSEGALTRR 142

Query: 61  AEMYQEYMKQIPIPAHRGSVIPFTTWMGLGKSIKQLYEQPLHYLTNIQLKQWDQLRFGSV 120
           AEMYQEYMKQIPIPAHRGSVIPFT+WMGLGKSIKQLY QPLHYLTNI LKQWDQLR GS 
Sbjct: 143 AEMYQEYMKQIPIPAHRGSVIPFTSWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRMGSE 202

Query: 121 DEYKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQL 175
           +EY+PLDTIIHP KAEAT+WL+EE+HR TSSH+H+A LWLSD MH  +VDSIFPQL
Sbjct: 203 EEYRPLDTIIHPCKAEATIWLMEEVHRHTSSHYHIANLWLSDPMHHAFVDSIFPQL 257

[Close]
BLAST of Cp4.1LG08g04150 vs. NCBI nr
Match: gi|1009141332|ref|XP_015888137.1| (PREDICTED: protein RDM1 [Ziziphus jujuba])

HSP 1 Score: 256.1 bits (653), Expect = 4.3e-65
Identity = 127/178 (71.35%), Postives = 145/178 (81.46%), Query Frame = 1 

Query: 1   MKRPMPWNEQVDVISSG--ESSSSDSEIGGQNDGFEFKPSIDDFKI--PAKEMTSDGMLI 60
           MKR +PWNE+VDVISS   ESSS D E+   N+G   K S DD     P  E+TS+G LI
Sbjct: 1   MKRTVPWNEEVDVISSDSDESSSLDKEVE-INNGRAVKQSTDDMMADHPTIEITSEGSLI 60

Query: 61  KRAEMYQEYMKQIPIPAHRGSVIPFTTWMGLGKSIKQLYEQPLHYLTNIQLKQWDQLRFG 120
           +RAEMYQEYMK+IPIP  RGS+IPF+TWMGLGKSIKQLY QPLHYLTN+ LKQWDQLRF 
Sbjct: 61  RRAEMYQEYMKRIPIPTRRGSIIPFSTWMGLGKSIKQLYGQPLHYLTNVLLKQWDQLRFN 120

Query: 121 SVDEYKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQL 175
           S DE++PLDTIIHP KAEATVWL+EE+HR TSSH+H+AKLWLSD MH  +VDSIFPQL
Sbjct: 121 SEDEHRPLDTIIHPCKAEATVWLIEEVHRCTSSHYHIAKLWLSDPMHHAFVDSIFPQL 177

The following BLAST results are available for this feature:
BLAST of Cp4.1LG08g04150 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RDM1_ARATH1.3e-4554.43Protein RDM1 OS=Arabidopsis thaliana GN=RDM1 PE=1 SV=1[more]
BLAST of Cp4.1LG08g04150 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L8M0_CUCSA4.7e-8789.66Uncharacterized protein OS=Cucumis sativus GN=Csa_3G146430 PE=4 SV=1[more]
M5XES6_PRUPE4.6e-6671.59Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010153mg PE=4 SV=1[more]
W9QYP0_9ROSA1.9e-6467.57Uncharacterized protein OS=Morus notabilis GN=L484_009096 PE=4 SV=1[more]
V4S8L1_9ROSI1.6e-6368.02Uncharacterized protein OS=Citrus clementina GN=CICLE_v10005993mg PE=4 SV=1[more]
A0A067G7B7_CITSI2.8e-6367.44Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g028897mg PE=4 SV=1[more]
BLAST of Cp4.1LG08g04150 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G22680.17.3e-4754.43 RNA-DIRECTED DNA METHYLATION 1[more]
BLAST of Cp4.1LG08g04150 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659076365|ref|XP_008438640.1|1.8e-8790.80PREDICTED: protein RDM1 [Cucumis melo][more]
gi|449432680|ref|XP_004134127.1|6.8e-8789.66PREDICTED: protein RDM1 [Cucumis sativus][more]
gi|645235451|ref|XP_008224276.1|2.3e-6671.59PREDICTED: protein RDM1 [Prunus mume][more]
gi|596187590|ref|XP_007223423.1|6.6e-6671.59hypothetical protein PRUPE_ppa010153mg [Prunus persica][more]
gi|1009141332|ref|XP_015888137.1|4.3e-6571.35PREDICTED: protein RDM1 [Ziziphus jujuba][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0044030regulation of DNA methylation
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR015270RDM1
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0070918 production of small RNA involved in gene silencing by RNA
biological_process GO:0044030 regulation of DNA methylation
cellular_component GO:0000419 DNA-directed RNA polymerase V complex
cellular_component GO:0005634 nucleus
molecular_function GO:0043621 protein self-association
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG08g04150.1Cp4.1LG08g04150.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015270Protein RDM1PFAMPF09187DUF1950coord: 55..173
score: 3.4
IPR015270Protein RDM1unknownSSF109920Hypothetical protein At3g22680coord: 53..173
score: 6.8
NoneNo IPR availablePANTHERPTHR36366FAMILY NOT NAMEDcoord: 2..174
score: 3.8
NoneNo IPR availablePANTHERPTHR36366:SF1PROTEIN RDM1coord: 2..174
score: 3.8

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG08g04150Cucsa.254500Cucumber (Gy14) v1cgycpeB0687
Cp4.1LG08g04150CmaCh00G003620Cucurbita maxima (Rimu)cmacpeB010
Cp4.1LG08g04150CmaCh14G017300Cucurbita maxima (Rimu)cmacpeB292
Cp4.1LG08g04150CmaCh06G013920Cucurbita maxima (Rimu)cmacpeB853
Cp4.1LG08g04150CmoCh06G013970Cucurbita moschata (Rifu)cmocpeB796
Cp4.1LG08g04150CmoCh14G017690Cucurbita moschata (Rifu)cmocpeB254
Cp4.1LG08g04150Cla021604Watermelon (97103) v1cpewmB845
Cp4.1LG08g04150Csa3G146430Cucumber (Chinese Long) v2cpecuB859
Cp4.1LG08g04150MELO3C006513Melon (DHL92) v3.5.1cpemeB813
Cp4.1LG08g04150ClCG05G004990Watermelon (Charleston Gray)cpewcgB787
Cp4.1LG08g04150CSPI03G12920Wild cucumber (PI 183967)cpecpiB861
Cp4.1LG08g04150Lsi05G016240Bottle gourd (USVL1VR-Ls)cpelsiB714
Cp4.1LG08g04150MELO3C006513.2Melon (DHL92) v3.6.1cpemedB951
Cp4.1LG08g04150CsaV3_3G013040Cucumber (Chinese Long) v3cpecucB1056
Cp4.1LG08g04150Bhi01G000563Wax gourdcpewgoB1110
Cp4.1LG08g04150CsGy3G013060Cucumber (Gy14) v2cgybcpeB454
Cp4.1LG08g04150Carg06156Silver-seed gourdcarcpeB1333
Cp4.1LG08g04150Carg23502Silver-seed gourdcarcpeB1184
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG08g04150Cp4.1LG03g10490Cucurbita pepo (Zucchini)cpecpeB482
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG08g04150Cucurbita maxima (Rimu)cmacpeB408
Cp4.1LG08g04150Cucurbita maxima (Rimu)cmacpeB411
Cp4.1LG08g04150Cucurbita maxima (Rimu)cmacpeB650
Cp4.1LG08g04150Cucurbita maxima (Rimu)cmacpeB931
Cp4.1LG08g04150Cucurbita moschata (Rifu)cmocpeB370
Cp4.1LG08g04150Cucurbita moschata (Rifu)cmocpeB373
Cp4.1LG08g04150Cucurbita moschata (Rifu)cmocpeB866
Cp4.1LG08g04150Cucumber (Chinese Long) v2cpecuB849
Cp4.1LG08g04150Bottle gourd (USVL1VR-Ls)cpelsiB697
Cp4.1LG08g04150Bottle gourd (USVL1VR-Ls)cpelsiB704
Cp4.1LG08g04150Bottle gourd (USVL1VR-Ls)cpelsiB716
Cp4.1LG08g04150Watermelon (Charleston Gray)cpewcgB762
Cp4.1LG08g04150Watermelon (Charleston Gray)cpewcgB788
Cp4.1LG08g04150Watermelon (97103) v1cpewmB823
Cp4.1LG08g04150Watermelon (97103) v1cpewmB841
Cp4.1LG08g04150Watermelon (97103) v1cpewmB853
Cp4.1LG08g04150Melon (DHL92) v3.5.1cpemeB805
Cp4.1LG08g04150Cucumber (Gy14) v2cgybcpeB278
Cp4.1LG08g04150Melon (DHL92) v3.6.1cpemedB945
Cp4.1LG08g04150Silver-seed gourdcarcpeB0166
Cp4.1LG08g04150Silver-seed gourdcarcpeB0329
Cp4.1LG08g04150Silver-seed gourdcarcpeB0456
Cp4.1LG08g04150Silver-seed gourdcarcpeB1101
Cp4.1LG08g04150Cucumber (Chinese Long) v3cpecucB1045
Cp4.1LG08g04150Wax gourdcpewgoB1100
Cp4.1LG08g04150Wax gourdcpewgoB1138
Cp4.1LG08g04150Wax gourdcpewgoB1120
Cp4.1LG08g04150Cucurbita pepo (Zucchini)cpecpeB192
Cp4.1LG08g04150Cucurbita pepo (Zucchini)cpecpeB194
Cp4.1LG08g04150Cucurbita pepo (Zucchini)cpecpeB342
Cp4.1LG08g04150Cucurbita pepo (Zucchini)cpecpeB507