Cp4.1LG03g10490.1 (mRNA) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG03g10490.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	RNA-directed DNA methylation 1
Location	Cp4.1LG03 : 11591204 .. 11593366 (+)
Sequence length	1225

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTAAAGCAAGGGGTGTAAGTTTGTGGGCTAAAGCTCTATGAACCGGTGGTTGAACCGGCCTTTTGAACAAATGTGGAACGTCTCCGATCTCCCCTCGCGCAAAAGCCAAACGCCGCGAACTCAAAACTGGTCTCTCAAATTCGAGCTTGATGAATAACTGAGCTATATTTTGTTGATCTGTCGCAAAATCCATATCGGAGAGGAGCTTCATCTCTACGATTGGACGCTCTCTCTCGCTTTTCGAATTACGAAGGTACTCACCATCACTCTCGCTTGTTGTCGATCCATTACCATCTCTGTTCATATGTAATAAATTCACTTGGTTTTGTGCTTCTTGCCGATAATCTCTATTCTTGTTCTTCCATTTCAGATTTCTACTTACCGACTCTCGTAATCTTTAATTTCCACTTGTTTTTACTCTGCTTTGAAATGCTTTCATTTTACAGGTCCGATGGGATTTTCGGTGCATTTGTATGAAAATTTATTGTTTATTTGTTTGTTTGAGAAGTCGATCGTAATTTTTTATCACTTGGTTGGTGGAGTCTTCCAGAATGTTGCTTAGAGGGATGAACATTCATCGTTTGATGCAAGTTCTTAGAAATTGCCCTAGATAGCGATGGTTATTAAGTGCACTGCTTATAATCTGAGCGTGATCCCTGGCGGAAACTGAGTGCATTGCTCCATAAGTTGCATGTGCGAGGTGGTTTTCGAGAATGGAGATGTCTATTAGTAAGATTGTGATGGCCTGATAGGGTGAATTTGTTTCTGCGTTGGACCCAGAACCAGAATTGAATTGGTTGATTTGTTCTATGTCTGTGATTAAATTTTGTAATGAACATGAGATTGAAAGTTTGAAGTACATTTTGTTTTATGCTAACTAAAAGCTGTTGTGCTCTTTTTCCATCTCAATAGTAATCTTTTGTATCTGTTGGATCTATTTATTGTGGTTGGCATCTCATATTACTAACTCTTCGTATACTCACATGAATCTTTAAACGTGCTGCTATTTGGTAATCTGTATTGTATTAATCGGCATCATAGCTAACCCATGATCACTTCTTGTCCAGAATTACATAATTGACAAAATGAAGAGGCCAATGCCGTGGAATGAACAAGTAGATGTTATATCATCAGGTGAATCTTCTTCCTCTGATTCAGAAACAGGAGTACAAAATGATGGATTCGAGTTCAAGCCTTCCATCGACGATTTCAAAATTCCTGCTAAAGAAATGACAGCTGAAGGTAATTTGACGCATTGCATAAGATCAATTCATAGTGTTTAATGATCAATGCTGCTGTATATATAAATTTTCATGTTCATAAGCTTTAAAAAAGAGGGTCTTTGAAATGTCGTTTAACGATGCAGGTACGTTGATTAAAAGGGCCGAAATGTATCAAGAATACATGAAACAGATCCAGATCCCAGCACAACGTGGTTCTGTAATACCATTTACAACATGGATGGGTTTAGGCAAATCTATAAAGCAGCTTTATGGTCAGCCTTTGCATTACTTGACTAACATTCTACTCAAACAGTGGGATCAATTAAGGTTCGGTAGTGTGGATGAATATAAGCCATTGGATACCGTAATTCATCCTAGTAAAGCTGAAGCAACTGTATGGCTGGTTGAAGAGATTCATAGGCGCACCTCGTCGCATCATCATGTTGCTAAACTGTGGTTATCAGACCCGATGCACGAAGCTTACGTTGACTCCATTTTCCCCCAACTTTGAAAGCTGCTTTCTGTTACGTTCGGGTCTGTGTCGATACTAAAACATATTTCTAGAAGGCTAACATGTTGATGACAATGTGAATTGTAATAGAAACAGCATAGTTCTTCAGTCACATTGCACTTTAATGTGTAGGTTTTTTTATATAATCCCATTGGGTTTCGTTGTATGCTCTTTGTAATATTATAGAGCTTCTTCAAACTTACATCCACGGCTTACATGCAACCATAATGAACAATCTTTGGGGAGATTCCTAGTTGATTCATTGACTGACTCCTCCTGTATGTGCTGCCCTTGTTTCACAGAATCACCATGGCCGCAAGCTGTTAATATGTTTACAAAAACTGTTTGCTATGGTTTCAACTCTTGCCATAGCATCTCATTGTAAGATTCTGTAGCTCGTTTGCCATTCCCATTGCTGTTGTCAATCG

mRNA sequence

TGTAAAGCAAGGGGTGTAAGTTTGTGGGCTAAAGCTCTATGAACCGGTGGTTGAACCGGCCTTTTGAACAAATGTGGAACGTCTCCGATCTCCCCTCGCGCAAAAGCCAAACGCCGCGAACTCAAAACTGGTCTCTCAAATTCGAGCTTGATGAATAACTGAGCTATATTTTGTTGATCTGTCGCAAAATCCATATCGGAGAGGAGCTTCATCTCTACGATTGGACGCTCTCTCTCGCTTTTCGAATTACGAAGAATTACATAATTGACAAAATGAAGAGGCCAATGCCGTGGAATGAACAAGTAGATGTTATATCATCAGGTGAATCTTCTTCCTCTGATTCAGAAACAGGAGTACAAAATGATGGATTCGAGTTCAAGCCTTCCATCGACGATTTCAAAATTCCTGCTAAAGAAATGACAGCTGAAGGTACGTTGATTAAAAGGGCCGAAATGTATCAAGAATACATGAAACAGATCCAGATCCCAGCACAACGTGGTTCTGTAATACCATTTACAACATGGATGGGTTTAGGCAAATCTATAAAGCAGCTTTATGGTCAGCCTTTGCATTACTTGACTAACATTCTACTCAAACAGTGGGATCAATTAAGGTTCGGTAGTGTGGATGAATATAAGCCATTGGATACCGTAATTCATCCTAGTAAAGCTGAAGCAACTGTATGGCTGGTTGAAGAGATTCATAGGCGCACCTCGTCGCATCATCATGTTGCTAAACTGTGGTTATCAGACCCGATGCACGAAGCTTACGTTGACTCCATTTTCCCCCAACTTTGAAAGCTGCTTTCTGTTACGTTCGGGTCTGTGTCGATACTAAAACATATTTCTAGAAGGCTAACATGTTGATGACAATGTGAATTGTAATAGAAACAGCATAGTTCTTCAGTCACATTGCACTTTAATGTGTAGGTTTTTTTATATAATCCCATTGGGTTTCGTTGTATGCTCTTTGTAATATTATAGAGCTTCTTCAAACTTACATCCACGGCTTACATGCAACCATAATGAACAATCTTTGGGGAGATTCCTAGTTGATTCATTGACTGACTCCTCCTGTATGTGCTGCCCTTGTTTCACAGAATCACCATGGCCGCAAGCTGTTAATATGTTTACAAAAACTGTTTGCTATGGTTTCAACTCTTGCCATAGCATCTCATTGTAAGATTCTGTAGCTCGTTTGCCATTCCCATTGCTGTTGTCAATCG

Coding sequence (CDS)

ATGAAGAGGCCAATGCCGTGGAATGAACAAGTAGATGTTATATCATCAGGTGAATCTTCTTCCTCTGATTCAGAAACAGGAGTACAAAATGATGGATTCGAGTTCAAGCCTTCCATCGACGATTTCAAAATTCCTGCTAAAGAAATGACAGCTGAAGGTACGTTGATTAAAAGGGCCGAAATGTATCAAGAATACATGAAACAGATCCAGATCCCAGCACAACGTGGTTCTGTAATACCATTTACAACATGGATGGGTTTAGGCAAATCTATAAAGCAGCTTTATGGTCAGCCTTTGCATTACTTGACTAACATTCTACTCAAACAGTGGGATCAATTAAGGTTCGGTAGTGTGGATGAATATAAGCCATTGGATACCGTAATTCATCCTAGTAAAGCTGAAGCAACTGTATGGCTGGTTGAAGAGATTCATAGGCGCACCTCGTCGCATCATCATGTTGCTAAACTGTGGTTATCAGACCCGATGCACGAAGCTTACGTTGACTCCATTTTCCCCCAACTTTGA

Protein sequence

MKRPMPWNEQVDVISSGESSSSDSETGVQNDGFEFKPSIDDFKIPAKEMTAEGTLIKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL

Homology

[Close]

BLAST of Cp4.1LG03g10490.1 vs. Swiss-Prot
Match: RDM1_ARATH (Protein RDM1 OS=Arabidopsis thaliana GN=RDM1 PE=1 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 3.6e-48
Identity = 90/158 (56.96%), Postives = 121/158 (76.58%), Query Frame = 1


Query: 16  SGESSSSDSETGVQNDGFEFKPSIDDFKIPAKEMTAEGTLIKRAEMYQEYMKQIQIPAQR 75
           SG+S SSD +  + +DGF             +++  EG+L++RAEMYQ+YMKQ+ IP  R
Sbjct: 12  SGDSGSSDVDAEI-SDGFS------PLDTSHRDVADEGSLLRRAEMYQDYMKQVPIPTNR 71

Query: 76  GSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEA 135
           GS+IPFT+W+GL  S+KQLYGQPLHYLTN+LL++WDQ RFG+  E + LD++IHP+KAEA
Sbjct: 72  GSLIPFTSWVGLSISMKQLYGQPLHYLTNVLLQRWDQSRFGTDSEEQRLDSIIHPTKAEA 131

Query: 136 TVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQ 174
           T+WLVEEIHR T SH H+A LW SDPM+ +++D IFP+
Sbjct: 132 TIWLVEEIHRLTPSHLHMALLWRSDPMYHSFIDPIFPE 162

[Close]

BLAST of Cp4.1LG03g10490.1 vs. TrEMBL
Match: A0A0A0L8M0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G146430 PE=4 SV=1)

HSP 1 Score: 344.0 bits (881), Expect = 1.1e-91
Identity = 162/174 (93.10%), Postives = 169/174 (97.13%), Query Frame = 1


Query: 1   MKRPMPWNEQVDVISSGESSSSDSETGVQNDGFEFKPSIDDFKIPAKEMTAEGTLIKRAE 60
           MKRPMPWNEQVD+ISSGESSSSDSE  +QNDG+EFKPS+DDFKIPAKEMT+EG L+KRAE
Sbjct: 1   MKRPMPWNEQVDIISSGESSSSDSEAAIQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAE 60

Query: 61  MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRFGSVDE 120
           MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLR GS DE
Sbjct: 61  MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRLGSADE 120

Query: 121 YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL 175
           YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMH+AYVDSIFPQL
Sbjct: 121 YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHQAYVDSIFPQL 174

[Close]

BLAST of Cp4.1LG03g10490.1 vs. TrEMBL
Match: M5XES6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010153mg PE=4 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 1.7e-68
Identity = 128/176 (72.73%), Postives = 148/176 (84.09%), Query Frame = 1


Query: 1   MKRPMPWNEQVDVISSGESSSSDSE--TGVQNDGFEFKPSIDDFKIPAKEMTAEGTLIKR 60
           MKR  PW+EQVDVISS +SSSSD E  T +++D  +   +    + PAKE T+EG L +R
Sbjct: 83  MKRAFPWDEQVDVISSDDSSSSDMEMETNIESDSKQLTNNTTSDQ-PAKERTSEGALTRR 142

Query: 61  AEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRFGSV 120
           AEMYQEYMKQI IPA RGSVIPFT+WMGLGKSIKQLYGQPLHYLTNILLKQWDQLR GS 
Sbjct: 143 AEMYQEYMKQIPIPAHRGSVIPFTSWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRMGSE 202

Query: 121 DEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL 175
           +EY+PLDT+IHP KAEAT+WL+EE+HR TSSH+H+A LWLSDPMH A+VDSIFPQL
Sbjct: 203 EEYRPLDTIIHPCKAEATIWLMEEVHRHTSSHYHIANLWLSDPMHHAFVDSIFPQL 257

[Close]

BLAST of Cp4.1LG03g10490.1 vs. TrEMBL
Match: W9QYP0_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_009096 PE=4 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 5.1e-65
Identity = 123/185 (66.49%), Postives = 150/185 (81.08%), Query Frame = 1


Query: 1   MKRPMPWNEQVDVISSGESSSS--------DSETGVQ---NDGFEFKPSIDDFKIPAKEM 60
           M++ +PWNEQVDVISS ESSSS        DS +G Q   ND  + +P+      P K++
Sbjct: 1   MEKGIPWNEQVDVISSDESSSSSDSEIEVRDSHSGKQLLTNDAID-QPTTHVLDQPLKDI 60

Query: 61  TAEGTLIKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQ 120
           T+EGTLIKRAE+YQ+YMKQI IP  RGS+IPFT+WMGLGKSIKQ+YGQPLHYLTN+ LK 
Sbjct: 61  TSEGTLIKRAELYQDYMKQIPIPTHRGSLIPFTSWMGLGKSIKQMYGQPLHYLTNVQLKH 120

Query: 121 WDQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDS 175
           WDQLR GS +E +PLDT++HPSKAEAT+WL+EE+HRRT+SH+H+AKLWL DPMH A+VDS
Sbjct: 121 WDQLRIGSEEEDRPLDTIVHPSKAEATIWLLEEVHRRTTSHYHIAKLWLLDPMHHAFVDS 180

[Close]

BLAST of Cp4.1LG03g10490.1 vs. TrEMBL
Match: A0A061EN17_THECC (Rna-directed dna methylation 1 isoform 1 OS=Theobroma cacao GN=TCM_020673 PE=4 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 6.7e-65
Identity = 122/176 (69.32%), Postives = 141/176 (80.11%), Query Frame = 1


Query: 1   MKRPMPWNEQVDVISSGESSSSDSETGVQNDGFEFKPSIDDFKI--PAKEMTAEGTLIKR 60
           MKR +PW+ QVDVI S ESSSS S +   +   +      +  +  P KE+++EG LI+R
Sbjct: 1   MKRALPWSAQVDVILSDESSSSSSSSSSSDSDIQVNNGTTNAAVDQPPKELSSEGLLIRR 60

Query: 61  AEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRFGSV 120
           AEMYQEYMKQ+ IP QRGS+IPFTTWMGLG+SIKQLYGQPLHYLTNILLKQWD LR GS 
Sbjct: 61  AEMYQEYMKQLPIPTQRGSIIPFTTWMGLGRSIKQLYGQPLHYLTNILLKQWDHLRIGSE 120

Query: 121 DEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL 175
           DE+ PLD VIHP KAEATVWLVEE+HR TSSHHH+AKLW SDPMH A+VDSIFP+L
Sbjct: 121 DEHSPLDIVIHPCKAEATVWLVEELHRCTSSHHHMAKLWQSDPMHHAFVDSIFPKL 176

[Close]

BLAST of Cp4.1LG03g10490.1 vs. TrEMBL
Match: A0A0B0PZ62_GOSAR (Protein RDM1-like protein OS=Gossypium arboreum GN=F383_07886 PE=4 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 1.5e-64
Identity = 120/180 (66.67%), Postives = 147/180 (81.67%), Query Frame = 1


Query: 1   MKRPMPWNEQVDVISSGESSSSDSETGVQNDGFEFKPSIDD------FKIPAKEMTAEGT 60
           MKR +PW++QVDVISS ESSSS S +   +  F+ +  ++D         P KE++++G 
Sbjct: 1   MKRALPWSDQVDVISSDESSSSSSSSSSYSS-FDVEVQVNDGTKNVAVDQPPKELSSDGL 60

Query: 61  LIKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLR 120
           LI++AE+YQEYMKQ+ IP QRGSVIPFTTWMGLG+SIKQLYGQPLHYLTNILLKQWD  R
Sbjct: 61  LIRKAEIYQEYMKQLPIPTQRGSVIPFTTWMGLGRSIKQLYGQPLHYLTNILLKQWDHSR 120

Query: 121 FGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL 175
            GS DE++PLD ++HP KAEATVWLVEE+HR+TSSHHH+AKLW SDPMH A++DSIFPQL
Sbjct: 121 VGSEDEHRPLDIIVHPCKAEATVWLVEELHRQTSSHHHMAKLWQSDPMHHAFIDSIFPQL 179

[Close]

BLAST of Cp4.1LG03g10490.1 vs. TAIR10
Match: AT3G22680.1 (AT3G22680.1 RNA-DIRECTED DNA METHYLATION 1)

HSP 1 Score: 192.6 bits (488), Expect = 2.1e-49
Identity = 90/158 (56.96%), Postives = 121/158 (76.58%), Query Frame = 1


Query: 16  SGESSSSDSETGVQNDGFEFKPSIDDFKIPAKEMTAEGTLIKRAEMYQEYMKQIQIPAQR 75
           SG+S SSD +  + +DGF             +++  EG+L++RAEMYQ+YMKQ+ IP  R
Sbjct: 12  SGDSGSSDVDAEI-SDGFS------PLDTSHRDVADEGSLLRRAEMYQDYMKQVPIPTNR 71

Query: 76  GSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEA 135
           GS+IPFT+W+GL  S+KQLYGQPLHYLTN+LL++WDQ RFG+  E + LD++IHP+KAEA
Sbjct: 72  GSLIPFTSWVGLSISMKQLYGQPLHYLTNVLLQRWDQSRFGTDSEEQRLDSIIHPTKAEA 131

Query: 136 TVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQ 174
           T+WLVEEIHR T SH H+A LW SDPM+ +++D IFP+
Sbjct: 132 TIWLVEEIHRLTPSHLHMALLWRSDPMYHSFIDPIFPE 162

[Close]

BLAST of Cp4.1LG03g10490.1 vs. NCBI nr
Match: gi|659076365|ref|XP_008438640.1| (PREDICTED: protein RDM1 [Cucumis melo])

HSP 1 Score: 345.9 bits (886), Expect = 4.1e-92
Identity = 165/174 (94.83%), Postives = 169/174 (97.13%), Query Frame = 1


Query: 1   MKRPMPWNEQVDVISSGESSSSDSETGVQNDGFEFKPSIDDFKIPAKEMTAEGTLIKRAE 60
           MKRPMPWNEQVDVISSGESSSSDSE  VQNDG+EFKPS+DDFKIPAKEMT+EG L+KRAE
Sbjct: 1   MKRPMPWNEQVDVISSGESSSSDSEAAVQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAE 60

Query: 61  MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRFGSVDE 120
           MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLR GS DE
Sbjct: 61  MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRLGSADE 120

Query: 121 YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL 175
           YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
Sbjct: 121 YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL 174

[Close]

BLAST of Cp4.1LG03g10490.1 vs. NCBI nr
Match: gi|449432680|ref|XP_004134127.1| (PREDICTED: protein RDM1 [Cucumis sativus])

HSP 1 Score: 344.0 bits (881), Expect = 1.6e-91
Identity = 162/174 (93.10%), Postives = 169/174 (97.13%), Query Frame = 1


Query: 1   MKRPMPWNEQVDVISSGESSSSDSETGVQNDGFEFKPSIDDFKIPAKEMTAEGTLIKRAE 60
           MKRPMPWNEQVD+ISSGESSSSDSE  +QNDG+EFKPS+DDFKIPAKEMT+EG L+KRAE
Sbjct: 1   MKRPMPWNEQVDIISSGESSSSDSEAAIQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAE 60

Query: 61  MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRFGSVDE 120
           MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLR GS DE
Sbjct: 61  MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRLGSADE 120

Query: 121 YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL 175
           YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMH+AYVDSIFPQL
Sbjct: 121 YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHQAYVDSIFPQL 174

[Close]

BLAST of Cp4.1LG03g10490.1 vs. NCBI nr
Match: gi|645235451|ref|XP_008224276.1| (PREDICTED: protein RDM1 [Prunus mume])

HSP 1 Score: 268.5 bits (685), Expect = 8.3e-69
Identity = 128/176 (72.73%), Postives = 149/176 (84.66%), Query Frame = 1


Query: 1   MKRPMPWNEQVDVISSGESSSSDSE--TGVQNDGFEFKPSIDDFKIPAKEMTAEGTLIKR 60
           MKR  PW+EQVDVISS +SSSSD E  T +++D  +   +    + PAKE T+EG L++R
Sbjct: 83  MKRAFPWDEQVDVISSDDSSSSDMEMETNIESDSKQLTNNTTSDQ-PAKERTSEGALVRR 142

Query: 61  AEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRFGSV 120
           AEMYQEYMKQI IPA RGSVIPFT+WMGLGKSIKQLYGQPLHYLTNILLKQWDQLR GS 
Sbjct: 143 AEMYQEYMKQIPIPAHRGSVIPFTSWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRMGSE 202

Query: 121 DEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL 175
           +EY+PLDT+IHP KAEAT+WL+EE+HR TSSH+H+A LWLSDPMH A+VDSIFPQL
Sbjct: 203 EEYRPLDTIIHPCKAEATIWLMEEVHRHTSSHYHIANLWLSDPMHHAFVDSIFPQL 257

[Close]

BLAST of Cp4.1LG03g10490.1 vs. NCBI nr
Match: gi|596187590|ref|XP_007223423.1| (hypothetical protein PRUPE_ppa010153mg [Prunus persica])

HSP 1 Score: 266.9 bits (681), Expect = 2.4e-68
Identity = 128/176 (72.73%), Postives = 148/176 (84.09%), Query Frame = 1


Query: 1   MKRPMPWNEQVDVISSGESSSSDSE--TGVQNDGFEFKPSIDDFKIPAKEMTAEGTLIKR 60
           MKR  PW+EQVDVISS +SSSSD E  T +++D  +   +    + PAKE T+EG L +R
Sbjct: 83  MKRAFPWDEQVDVISSDDSSSSDMEMETNIESDSKQLTNNTTSDQ-PAKERTSEGALTRR 142

Query: 61  AEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRFGSV 120
           AEMYQEYMKQI IPA RGSVIPFT+WMGLGKSIKQLYGQPLHYLTNILLKQWDQLR GS 
Sbjct: 143 AEMYQEYMKQIPIPAHRGSVIPFTSWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRMGSE 202

Query: 121 DEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL 175
           +EY+PLDT+IHP KAEAT+WL+EE+HR TSSH+H+A LWLSDPMH A+VDSIFPQL
Sbjct: 203 EEYRPLDTIIHPCKAEATIWLMEEVHRHTSSHYHIANLWLSDPMHHAFVDSIFPQL 257

[Close]

BLAST of Cp4.1LG03g10490.1 vs. NCBI nr
Match: gi|1009141332|ref|XP_015888137.1| (PREDICTED: protein RDM1 [Ziziphus jujuba])

HSP 1 Score: 265.0 bits (676), Expect = 9.2e-68
Identity = 129/178 (72.47%), Postives = 150/178 (84.27%), Query Frame = 1


Query: 1   MKRPMPWNEQVDVISSG--ESSSSDSETGVQNDGFEFKPSIDDFKI--PAKEMTAEGTLI 60
           MKR +PWNE+VDVISS   ESSS D E  + N+G   K S DD     P  E+T+EG+LI
Sbjct: 1   MKRTVPWNEEVDVISSDSDESSSLDKEVEI-NNGRAVKQSTDDMMADHPTIEITSEGSLI 60

Query: 61  KRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRFG 120
           +RAEMYQEYMK+I IP +RGS+IPF+TWMGLGKSIKQLYGQPLHYLTN+LLKQWDQLRF 
Sbjct: 61  RRAEMYQEYMKRIPIPTRRGSIIPFSTWMGLGKSIKQLYGQPLHYLTNVLLKQWDQLRFN 120

Query: 121 SVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL 175
           S DE++PLDT+IHP KAEATVWL+EE+HR TSSH+H+AKLWLSDPMH A+VDSIFPQL
Sbjct: 121 SEDEHRPLDTIIHPCKAEATVWLIEEVHRCTSSHYHIAKLWLSDPMHHAFVDSIFPQL 177

The following BLAST results are available for this feature:

BLAST of Cp4.1LG03g10490.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RDM1_ARATH	3.6e-48	56.96	Protein RDM1 OS=Arabidopsis thaliana GN=RDM1 PE=1 SV=1	[more]

BLAST of Cp4.1LG03g10490.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L8M0_CUCSA	1.1e-91	93.10	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G146430 PE=4 SV=1	[more]
M5XES6_PRUPE	1.7e-68	72.73	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010153mg PE=4 SV=1	[more]
W9QYP0_9ROSA	5.1e-65	66.49	Uncharacterized protein OS=Morus notabilis GN=L484_009096 PE=4 SV=1	[more]
A0A061EN17_THECC	6.7e-65	69.32	Rna-directed dna methylation 1 isoform 1 OS=Theobroma cacao GN=TCM_020673 PE=4 S...	[more]
A0A0B0PZ62_GOSAR	1.5e-64	66.67	Protein RDM1-like protein OS=Gossypium arboreum GN=F383_07886 PE=4 SV=1	[more]

BLAST of Cp4.1LG03g10490.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G22680.1	2.1e-49	56.96	RNA-DIRECTED DNA METHYLATION 1	[more]

BLAST of Cp4.1LG03g10490.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659076365\|ref\|XP_008438640.1\|	4.1e-92	94.83	PREDICTED: protein RDM1 [Cucumis melo]	[more]
gi\|449432680\|ref\|XP_004134127.1\|	1.6e-91	93.10	PREDICTED: protein RDM1 [Cucumis sativus]	[more]
gi\|645235451\|ref\|XP_008224276.1\|	8.3e-69	72.73	PREDICTED: protein RDM1 [Prunus mume]	[more]
gi\|596187590\|ref\|XP_007223423.1\|	2.4e-68	72.73	hypothetical protein PRUPE_ppa010153mg [Prunus persica]	[more]
gi\|1009141332\|ref\|XP_015888137.1\|	9.2e-68	72.47	PREDICTED: protein RDM1 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Biological Process**
Term	Definition
GO:0044030	regulation of DNA methylation

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **INTERPRO**
Term	Definition
IPR015270	RDM1

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044030	regulation of DNA methylation
biological_process	GO:0070918	production of small RNA involved in gene silencing by RNA
cellular_component	GO:0005634	nucleus
cellular_component	GO:0000419	DNA-directed RNA polymerase V complex
molecular_function	GO:0043621	protein self-association

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG03g10490	Cp4.1LG03g10490	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG03g10490.1:five_prime_utr:002	Cp4.1LG03g10490.1:five_prime_utr:002	five_prime_UTR
Cp4.1LG03g10490.1:five_prime_utr:001	Cp4.1LG03g10490.1:five_prime_utr:001	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG03g10490.1:cds:002	Cp4.1LG03g10490.1:cds:002	CDS
Cp4.1LG03g10490.1:cds:001	Cp4.1LG03g10490.1:cds:001	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG03g10490.1:three_prime_utr:001	Cp4.1LG03g10490.1:three_prime_utr:001	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG03g10490.1	Cp4.1LG03g10490.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR015270	Protein RDM1	PFAM	PF09187	DUF1950	coord: 55..173 score: 9.6
IPR015270	Protein RDM1	unknown	SSF109920	Hypothetical protein At3g22680	coord: 53..173 score: 5.23
None	No IPR available	PANTHER	PTHR36366	FAMILY NOT NAMED	coord: 2..174 score: 2.0
None	No IPR available	PANTHER	PTHR36366:SF1	PROTEIN RDM1	coord: 2..174 score: 2.0