Cp4.1LG01g20890 (gene) Cucurbita pepo (Zucchini)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GAGATATTTAATACTAGAGATTCACCCGAGAAAATATTGAGTGGAGCAAACAAAGAGTGCTTTTATATCCACAAATTTTACCAACAAGTGCCTTCATTTCACACCACAAACATTCCCAAAATATCCTTTTTTTTTTCTTTTTTTTTTTAATTTCTCCAAATTTCTTAAAACCCTAATTTCAAACTTCCCAAAAAAAAAAAAAAAAGAATCAACTAAAAAATCATTAGGTTCAATGATAATGAAGCAGAGAANAGCTCCCAGTTGCCCTAAAAGCTTTATCCATCACCAATGGCGCTCGACAACTGTATACAACTGAGCACCGCCGCCGCCATGTATGGCACCACTTCCATCCCCAAATCTCACCCATTCTCTTCCACTTTCCACCAAAAGCCAACTCTCTCCCTTCAACGCTTCAACAAATTCCCCACTTCCACGGCGCGATTCAAGTCCTTCTCTCCTTCCACCTCCGTCTCCACTTTCGGCAAATCCCGCTCCGTCACCTGTAAAGCTCGCGGCGCCGTTGACGACGGTTAGTCACCCGATCTAATCTTCTCGGTATAACAATTTTTGTTTTACACAATCAAACAATCTCGTTTCTCCGCCTTCTAGGGTTTAGAAATTCGACTCTGTTTTTCTCGTAAATTGCAGTGAAGGAGGTTACAGAGTCGAGCTGGAATGAGTTGGTGGTGGAGAGTGAAAAGACGGTGCTGGTGGAATTTTGGGCGCCGTGGTGTGGACCGTGCAAGATGATTGAGCCAGTGATTAGGGAATTGGCGCAGGATTATGCAGGGAAAATCGTGTGTTTGAAGCTCAATACAGACGCCAGCCCAAATGTAGCCTCGAAATATGGGATTAGAAGCATTCCCACAGTTCTGTTCTTCAAGAATGGACAGAAGAGAGAGGGCGTCATTGGGGCTGTACCCAAATCCACCTTGTCCGCCTCCATTGATAAGTATCTCGAGGTTTGAAGAATCCCATTCATTAGAGATGGTTTTCGAATCTTCTTCTTCCTCTTCTTCTTGTTGTTCATCTTGTATATGAATATCATCATCATGTTGTGTAAAAATTGGAAAACTCATAATCGTTTCATCAAGAATCTCTTCTTTAATTCTCTGTTTGAGTTTGTGAATTTGAAACTTTTGTGCCCATTTTTTTCATTCTTGGCGGAAATCTATTACCTGTTTATAGAATTGAGAAGAATTTGTGACCAAGTTCAAGTTTATATAAAGTGATTCATGGACAAAAAGCTGCTGTAGCTAAAAGAAAATTGATGAAATTTTCTCTAATAATCATCAATGATCAAATTCAAGTTAAAATTTTGTTTATTTATCTCTTAAACTAAAAGAATGTGTTATAATTCTACAAAATTCATTGAAAATAACTTGAAAAAGCATAACAATTCATTACCTAAATTGAAGCTTTCCTTCACTTGGCCACTCAACTCAGGCAACCCATTTTTGGATTTCTTTCAAATGAACAAAATCCTTGAAGAATCATAACAAAACCCAAAATGCTATGAAGAAATTAAATGATGAAAACTAATAATAAAAAAAGAAGGATATATTAGTGGGAAAACTATAGAAATAGACAGATTACATTTGAGAAATCACAGAAAACCTGCCCCTATTCACCATCCCCAGCCATCAGACTTTCCTTTTTCGTATAATATAAAAGCATATATATTGGTACAAAGTGTGAATCATTATGTCCCGCACCTGTGTTTGCCATTCTGTGCCTGCCTTTCTCTTGCAGGGCCATCGGCAACAAACTCTCACAATTGGAATGAATGCTGCAGAAGCAGCAGCTGAGATCATCAAGGCACCAATCGCTGTATGTCGATTCGTATATATAGCTTGTTTTTCTTCATGGGAATGGCTTCCAGTCGTATTGGAGATTACTTAAGCTGTTTACAGCTCCGAGTCCGCTTAGAAGGTGGTTTCCCAAATCTTGCTGTTGACCATTCATGCTTTGTTCTAGAGCGAGCGACGCCATTCCTATTCGTCTGTTCATAATGGAGTTGTTTCCCATTGCATTTCTCATTCCATTAACCATGGCAGGCTGCCCAAGCCCACTCCCCATTGATCCATATCCACCTCCTCCCATGCCCGAGCCACCGTTGGTTGTTGTTCCGTTTCCCCCTATACAATTTCCCCCATTGTTGACACCTGTATTGCCTGTAGGTAAGATCCCATTCACATTTTTCATATCATTGACCACCGAACCCATGCCAACCAGACTAGACGAGCCATTCATTTGATTGTTCATCATCATCTCTTGTAAGATCTTTTGTACGGAGGACTGTGTATCACTAGGATCAGCATCCCCAGATAAAGCAGATTGTTGCATAGAGATGTTTGCCGGAGAATTAGCAGTACTCATCTGATTGGAACTCTTTGAAGCTGTATGCGTTGGGTGTGAAGGATTGTTGGATGACGAGGGAGTTGGCGGCTGGAATGTAGAAGGGTTTGGTTGTGTAGGTGGAATCGTACTGGATGAACCCGGGGACGGAATCTGAACAGAACTTCCCCCATTTGAGTTACTAGGTTTAGCCATAGTGTTCTGCTGTCTGGAGTTCATAGAATTCTGGTGAAGAAGCCCGACAATGGTGCTTGCTGAGTTTGATGTCGAAGGTTGGTTGGCGTTGCTATTTACACTGGTCACACCATTGCTAGCTAAAATCTGCACTGCAGAAGCCTGAACAAAACTCTGATTATTATTTGGGCGCTGGGCTATGGATGATTGTTGTTGTTGCTGCTGCTGCTGCTCATCAGAACCTTGAGCTTGTGTTGTAAGCCCTGATGACGAACTAGACCTCCGAGGAAACTTGGCTA GAGATATTTAATACTAGAGATTCACCCGAGAAAATATTGAGTGGAGCAAACAAAGAGTGCTTTTATATCCACAAATTTTACCAACAAGTGCCTTCATTTCACACCACAAACATTCCCAAAATATCCTTTTTTTTTTCTTTTTTTTTTTAATTTCTCCAAATTTCTTAAAACCCTAATTTCAAACTTCCCAAAAAAAAAAAAAAAAGAATCAACTAAAAAATCATTAGGTTCAATGATAATGAAGCAGAGAANAGCTCCCAGTTGCCCTAAAAGCTTTATCCATCACCAATGGCGCTCGACAACTGTATACAACTGAGCACCGCCGCCGCCATGTATGGCACCACTTCCATCCCCAAATCTCACCCATTCTCTTCCACTTTCCACCAAAAGCCAACTCTCTCCCTTCAACGCTTCAACAAATTCCCCACTTCCACGGCGCGATTCAAGTCCTTCTCTCCTTCCACCTCCGTCTCCACTTTCGGCAAATCCCGCTCCGTCACCTGTAAAGCTCGCGGCGCCGTTGACGACGTGAAGGAGGTTACAGAGTCGAGCTGGAATGAGTTGGTGGTGGAGAGTGAAAAGACGGTGCTGGTGGAATTTTGGGCGCCGTGGTGTGGACCGTGCAAGATGATTGAGCCAGTGATTAGGGAATTGGCGCAGGATTATGCAGGGAAAATCGTGTGTTTGAAGCTCAATACAGACGCCAGCCCAAATGTAGCCTCGAAATATGGGATTAGAAGCATTCCCACAGTTCTGTTCTTCAAGAATGGACAGAAGAGAGAGGGCGTCATTGGGGCTGTACCCAAATCCACCTTGTCCGCCTCCATTGATAAGTATCTCGAGGTTTGAAGAATCCCATTCATTAGAGATGGTTTTCGAATCTTCTTCTTCCTCTTCTTCTTGTTGTTCATCTTGTATATGAATATCATCATCATGTTGTGTAAAAATTGGAAAACTCATAATCGTTTCATCAAGAATCTCTTCTTTAATTCTCTGTTTGAGTTTGTGAATTTGAAACTTTTGTGCCCATTTTTTTCATTCTTGGCGGAAATCTATTACCTGTTTATAGAATTGAGAAGAATTTGTGACCAAGTTCAAGTTTATATAAAGTGATTCATGGACAAAAAGCTGCTGTAGCTAAAAGAAAATTGATGAAATTTTCTCTAATAATCATCAATGATCAAATTCAAGTTAAAATTTTGTTTATTTATCTCTTAAACTAAAAGAATGTGTTATAATTCTACAAAATTCATTGAAAATAACTTGAAAAAGCATAACAATTCATTACCTAAATTGAAGCTTTCCTTCACTTGGCCACTCAACTCAGGCAACCCATTTTTGGATTTCTTTCAAATGAACAAAATCCTTGAAGAATCATAACAAAACCCAAAATGCTATGAAGAAATTAAATGATGAAAACTAATAATAAAAAAAGAAGGATATATTAGTGGGAAAACTATAGAAATAGACAGATTACATTTGAGAAATCACAGAAAACCTGCCCCTATTCACCATCCCCAGCCATCAGACTTTCCTTTTTCGTATAATATAAAAGCATATATATTGGTACAAAGTGTGAATCATTATGTCCCGCACCTGTGTTTGCCATTCTGTGCCTGCCTTTCTCTTGCAGGGCCATCGGCAACAAACTCTCACAATTGGAATGAATGCTGCAGAAGCAGCAGCTGAGATCATCAAGGCACCAATCGCTGTATGTCGATTCGTATATATAGCTTGTTTTTCTTCATGGGAATGGCTTCCAGTCGTATTGGAGATTACTTAAGCTGTTTACAGCTCCGAGTCCGCTTAGAAGGTGGTTTCCCAAATCTTGCTGTTGACCATTCATGCTTTGTTCTAGAGCGAGCGACGCCATTCCTATTCGTCTGTTCATAATGGAGTTGTTTCCCATTGCATTTCTCATTCCATTAACCATGGCAGGCTGCCCAAGCCCACTCCCCATTGATCCATATCCACCTCCTCCCATGCCCGAGCCACCGTTGGTTGTTGTTCCGTTTCCCCCTATACAATTTCCCCCATTGTTGACACCTGTATTGCCTGTAGGTAAGATCCCATTCACATTTTTCATATCATTGACCACCGAACCCATGCCAACCAGACTAGACGAGCCATTCATTTGATTGTTCATCATCATCTCTTGTAAGATCTTTTGTACGGAGGACTGTGTATCACTAGGATCAGCATCCCCAGATAAAGCAGATTGTTGCATAGAGATGTTTGCCGGAGAATTAGCAGTACTCATCTGATTGGAACTCTTTGAAGCTGTATGCGTTGGGTGTGAAGGATTGTTGGATGACGAGGGAGTTGGCGGCTGGAATGTAGAAGGGTTTGGTTGTGTAGGTGGAATCGTACTGGATGAACCCGGGGACGGAATCTGAACAGAACTTCCCCCATTTGAGTTACTAGGTTTAGCCATAGTGTTCTGCTGTCTGGAGTTCATAGAATTCTGGTGAAGAAGCCCGACAATGGTGCTTGCTGAGTTTGATGTCGAAGGTTGGTTGGCGTTGCTATTTACACTGGTCACACCATTGCTAGCTAAAATCTGCACTGCAGAAGCCTGAACAAAACTCTGATTATTATTTGGGCGCTGGGCTATGGATGATTGTTGTTGTTGCTGCTGCTGCTGCTCATCAGAACCTTGAGCTTGTGTTGTAAGCCCTGATGACGAACTAGACCTCCGAGGAAACTTGGCTA ATGGCGCTCGACAACTGTATACAACTGAGCACCGCCGCCGCCATGTATGGCACCACTTCCATCCCCAAATCTCACCCATTCTCTTCCACTTTCCACCAAAAGCCAACTCTCTCCCTTCAACGCTTCAACAAATTCCCCACTTCCACGGCGCGATTCAAGTCCTTCTCTCCTTCCACCTCCGTCTCCACTTTCGGCAAATCCCGCTCCGTCACCTGTAAAGCTCGCGGCGCCGTTGACGACGTGAAGGAGGTTACAGAGTCGAGCTGGAATGAGTTGGTGGTGGAGAGTGAAAAGACGGTGCTGGTGGAATTTTGGGCGCCGTGGTGTGGACCGTGCAAGATGATTGAGCCAGTGATTAGGGAATTGGCGCAGGATTATGCAGGGAAAATCGTGTGTTTGAAGCTCAATACAGACGCCAGCCCAAATGTAGCCTCGAAATATGGGATTAGAAGCATTCCCACAGTTCTGTTCTTCAAGAATGGACAGAAGAGAGAGGGCGTCATTGGGGCTGTACCCAAATCCACCTTGTCCGCCTCCATTGATAAGTATCTCGAGGTTTGA MALDNCIQLSTAAAMYGTTSIPKSHPFSSTFHQKPTLSLQRFNKFPTSTARFKSFSPSTSVSTFGKSRSVTCKARGAVDDVKEVTESSWNELVVESEKTVLVEFWAPWCGPCKMIEPVIRELAQDYAGKIVCLKLNTDASPNVASKYGIRSIPTVLFFKNGQKREGVIGAVPKSTLSASIDKYLEV
BLAST of Cp4.1LG01g20890 vs. Swiss-Prot
Match: TRXM_SPIOL (Thioredoxin M-type, chloroplastic OS=Spinacia oleracea PE=1 SV=2) HSP 1 Score: 184.9 bits (468), Expect = 8.1e-46 Identity = 99/186 (53.23%), Postives = 134/186 (72.04%), Query Frame = 1
BLAST of Cp4.1LG01g20890 vs. Swiss-Prot
Match: TRXM_PEA (Thioredoxin M-type, chloroplastic OS=Pisum sativum PE=2 SV=1) HSP 1 Score: 171.8 bits (434), Expect = 7.1e-42 Identity = 77/115 (66.96%), Postives = 97/115 (84.35%), Query Frame = 1
BLAST of Cp4.1LG01g20890 vs. Swiss-Prot
Match: TRXM_MAIZE (Thioredoxin M-type, chloroplastic OS=Zea mays GN=TRM1 PE=2 SV=1) HSP 1 Score: 167.9 bits (424), Expect = 1.0e-40 Identity = 77/113 (68.14%), Postives = 91/113 (80.53%), Query Frame = 1
BLAST of Cp4.1LG01g20890 vs. Swiss-Prot
Match: TRXM5_ORYSJ (Thioredoxin M5, chloroplastic OS=Oryza sativa subsp. japonica GN=TRXM PE=2 SV=1) HSP 1 Score: 162.2 bits (409), Expect = 5.6e-39 Identity = 72/113 (63.72%), Postives = 89/113 (78.76%), Query Frame = 1
BLAST of Cp4.1LG01g20890 vs. Swiss-Prot
Match: TRXM_WHEAT (Thioredoxin M-type, chloroplastic OS=Triticum aestivum PE=2 SV=1) HSP 1 Score: 162.2 bits (409), Expect = 5.6e-39 Identity = 72/113 (63.72%), Postives = 87/113 (76.99%), Query Frame = 1
BLAST of Cp4.1LG01g20890 vs. TrEMBL
Match: A0A0A0KIC1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G343710 PE=4 SV=1) HSP 1 Score: 266.5 bits (680), Expect = 2.4e-68 Identity = 142/191 (74.35%), Postives = 153/191 (80.10%), Query Frame = 1
BLAST of Cp4.1LG01g20890 vs. TrEMBL
Match: W9RYW2_9ROSA (Thioredoxin M-type OS=Morus notabilis GN=L484_005391 PE=4 SV=1) HSP 1 Score: 203.0 bits (515), Expect = 3.2e-49 Identity = 108/193 (55.96%), Postives = 135/193 (69.95%), Query Frame = 1
BLAST of Cp4.1LG01g20890 vs. TrEMBL
Match: A0A061FPW8_THECC (Thioredoxin M-type 4 OS=Theobroma cacao GN=TCM_035372 PE=4 SV=1) HSP 1 Score: 201.1 bits (510), Expect = 1.2e-48 Identity = 108/189 (57.14%), Postives = 134/189 (70.90%), Query Frame = 1
BLAST of Cp4.1LG01g20890 vs. TrEMBL
Match: I3SJS4_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1) HSP 1 Score: 198.4 bits (503), Expect = 7.9e-48 Identity = 109/195 (55.90%), Postives = 140/195 (71.79%), Query Frame = 1
BLAST of Cp4.1LG01g20890 vs. TrEMBL
Match: M5W035_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012199mg PE=4 SV=1) HSP 1 Score: 198.4 bits (503), Expect = 7.9e-48 Identity = 104/186 (55.91%), Postives = 133/186 (71.51%), Query Frame = 1
BLAST of Cp4.1LG01g20890 vs. TAIR10
Match: AT4G03520.1 (AT4G03520.1 Thioredoxin superfamily protein) HSP 1 Score: 151.4 bits (381), Expect = 5.6e-37 Identity = 62/117 (52.99%), Postives = 92/117 (78.63%), Query Frame = 1
BLAST of Cp4.1LG01g20890 vs. TAIR10
Match: AT1G03680.1 (AT1G03680.1 thioredoxin M-type 1) HSP 1 Score: 142.5 bits (358), Expect = 2.6e-34 Identity = 68/150 (45.33%), Postives = 99/150 (66.00%), Query Frame = 1
BLAST of Cp4.1LG01g20890 vs. TAIR10
Match: AT3G15360.1 (AT3G15360.1 thioredoxin M-type 4) HSP 1 Score: 140.2 bits (352), Expect = 1.3e-33 Identity = 74/180 (41.11%), Postives = 113/180 (62.78%), Query Frame = 1
BLAST of Cp4.1LG01g20890 vs. TAIR10
Match: AT2G15570.2 (AT2G15570.2 Thioredoxin superfamily protein) HSP 1 Score: 116.7 bits (291), Expect = 1.5e-26 Identity = 50/102 (49.02%), Postives = 72/102 (70.59%), Query Frame = 1
BLAST of Cp4.1LG01g20890 vs. TAIR10
Match: AT1G43560.1 (AT1G43560.1 thioredoxin Y2) HSP 1 Score: 89.7 bits (221), Expect = 2.0e-18 Identity = 49/145 (33.79%), Postives = 88/145 (60.69%), Query Frame = 1
BLAST of Cp4.1LG01g20890 vs. NCBI nr
Match: gi|449466020|ref|XP_004150725.1| (PREDICTED: thioredoxin M-type, chloroplastic-like [Cucumis sativus]) HSP 1 Score: 266.5 bits (680), Expect = 3.4e-68 Identity = 142/191 (74.35%), Postives = 153/191 (80.10%), Query Frame = 1
BLAST of Cp4.1LG01g20890 vs. NCBI nr
Match: gi|703129120|ref|XP_010104288.1| (Thioredoxin M-type [Morus notabilis]) HSP 1 Score: 203.0 bits (515), Expect = 4.6e-49 Identity = 108/193 (55.96%), Postives = 135/193 (69.95%), Query Frame = 1
BLAST of Cp4.1LG01g20890 vs. NCBI nr
Match: gi|694362443|ref|XP_009360706.1| (PREDICTED: thioredoxin M-type, chloroplastic-like [Pyrus x bretschneideri]) HSP 1 Score: 202.6 bits (514), Expect = 6.0e-49 Identity = 109/188 (57.98%), Postives = 133/188 (70.74%), Query Frame = 1
BLAST of Cp4.1LG01g20890 vs. NCBI nr
Match: gi|590600036|ref|XP_007019349.1| (Thioredoxin M-type 4 [Theobroma cacao]) HSP 1 Score: 201.1 bits (510), Expect = 1.7e-48 Identity = 108/189 (57.14%), Postives = 134/189 (70.90%), Query Frame = 1
BLAST of Cp4.1LG01g20890 vs. NCBI nr
Match: gi|657979511|ref|XP_008381719.1| (PREDICTED: thioredoxin M-type, chloroplastic-like [Malus domestica]) HSP 1 Score: 201.1 bits (510), Expect = 1.7e-48 Identity = 108/188 (57.45%), Postives = 132/188 (70.21%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: None |