CmaCh15G006320 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh15G006320
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Thioredoxin m family protein
Location	Cma_Chr15 : 2989329 .. 2990118 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCACTAGATAACTGTGTTCAACTGAGCACCGCCGCCGCCACCGCCACCGCCATGTGCGCCACCACTCCCAGAATCAAATCTCATCCCTTTTGTTATAATCACCACCTAAACACAACCTTAACCCTTCAACGCAAATTGCCCATTTCCACTTCCGGAAACAAGTCCTTCTCCCCTTCTACCATCATTTCCACTTTCAGAAAATCCTTCTCCCTCTGTCGAGCTCGTGGCGCCGTCGATGATGGTTACTCTACTCTCCCGATTCATATTACATTGATTCTTCTCTGCTTTTGTGTTTGTGGGGTTTGCAAATTTGATGAGATTTTCCTTTCTTCGTGCAGTGCCGGAGGTGACAGAGTCGAGTTGGGACAGTTTGGTGTTCGGGAGTCAAAAGGCTGTGCTGGTGGAGTTTTGGGCGCCGTGGTGTGGACCTTGCAAGATCATTGAGCCTGTGATTAAGGATTTGGCACAGGAATATGCAGGCAAGATTGTGTGTTTGAAGCTCAATACAGATCTCAGCCCAAATGTGGCCTCAAAATATGGTATTAGAAGCATTCCCACGGTTCTGTTCTTCAAGAATGGAGAGAAAAGAGAGAGCGTCAGTGGGGCTGTGCCCAGATCCACCTTGGCCGCCACCATTGACAAGTATGCCGAGGTTTAATTTTGAAGAATCCCCCCATCATCGAACTCCATCAGAGATACCTTCCAATATTTTTCTTCTTCAGCTTGTAAAAATTGCAAAAAATTTATGGATCTCTTCTTCAATTCGACAATTTTCTTTTTGTTCTTC

mRNA sequence

ATGGCACTAGATAACTGTGTTCAACTGAGCACCGCCGCCGCCACCGCCACCGCCATGTGCGCCACCACTCCCAGAATCAAATCTCATCCCTTTTGTTATAATCACCACCTAAACACAACCTTAACCCTTCAACGCAAATTGCCCATTTCCACTTCCGGAAACAAGTCCTTCTCCCCTTCTACCATCATTTCCACTTTCAGAAAATCCTTCTCCCTCTGTCGAGCTCGTGGCGCCGTCGATGATGTGCCGGAGGTGACAGAGTCGAGTTGGGACAGTTTGGTGTTCGGGAGTCAAAAGGCTGTGCTGGTGGAGTTTTGGGCGCCGTGGTGTGGACCTTGCAAGATCATTGAGCCTGTGATTAAGGATTTGGCACAGGAATATGCAGGCAAGATTGTGTGTTTGAAGCTCAATACAGATCTCAGCCCAAATGTGGCCTCAAAATATGGTATTAGAAGCATTCCCACGGTTCTGTTCTTCAAGAATGGAGAGAAAAGAGAGAGCGTCAGTGGGGCTGTGCCCAGATCCACCTTGGCCGCCACCATTGACAAGTATGCCGAGGTTTAATTTTGAAGAATCCCCCCATCATCGAACTCCATCAGAGATACCTTCCAATATTTTTCTTCTTCAGCTTGTAAAAATTGCAAAAAATTTATGGATCTCTTCTTCAATTCGACAATTTTCTTTTTGTTCTTC

Coding sequence (CDS)

ATGGCACTAGATAACTGTGTTCAACTGAGCACCGCCGCCGCCACCGCCACCGCCATGTGCGCCACCACTCCCAGAATCAAATCTCATCCCTTTTGTTATAATCACCACCTAAACACAACCTTAACCCTTCAACGCAAATTGCCCATTTCCACTTCCGGAAACAAGTCCTTCTCCCCTTCTACCATCATTTCCACTTTCAGAAAATCCTTCTCCCTCTGTCGAGCTCGTGGCGCCGTCGATGATGTGCCGGAGGTGACAGAGTCGAGTTGGGACAGTTTGGTGTTCGGGAGTCAAAAGGCTGTGCTGGTGGAGTTTTGGGCGCCGTGGTGTGGACCTTGCAAGATCATTGAGCCTGTGATTAAGGATTTGGCACAGGAATATGCAGGCAAGATTGTGTGTTTGAAGCTCAATACAGATCTCAGCCCAAATGTGGCCTCAAAATATGGTATTAGAAGCATTCCCACGGTTCTGTTCTTCAAGAATGGAGAGAAAAGAGAGAGCGTCAGTGGGGCTGTGCCCAGATCCACCTTGGCCGCCACCATTGACAAGTATGCCGAGGTTTAA

Protein sequence

MALDNCVQLSTAAATATAMCATTPRIKSHPFCYNHHLNTTLTLQRKLPISTSGNKSFSPSTIISTFRKSFSLCRARGAVDDVPEVTESSWDSLVFGSQKAVLVEFWAPWCGPCKIIEPVIKDLAQEYAGKIVCLKLNTDLSPNVASKYGIRSIPTVLFFKNGEKRESVSGAVPRSTLAATIDKYAEV

Homology

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BLAST of CmaCh15G006320 vs. Swiss-Prot
Match: TRXM_SPIOL (Thioredoxin M-type, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 177.2 bits (448), Expect = 1.7e-43
Identity = 95/192 (49.48%), Postives = 125/192 (65.10%), Query Frame = 1


Query: 1   MALDNCVQLSTAAATATAMCATTPRIKSHPFCYNHHLN--------TTLTLQRKLPISTS 60
           MA++NC+QLST+A+  T        +KSH     HHL         T   L+R  P  +S
Sbjct: 1   MAIENCLQLSTSASVGTVA------VKSHV----HHLQPSSKVNVPTFRGLKRSFPALSS 60

Query: 61  GNKSFSPSTIISTFRKSFSLCRARGAVDDVPEVTESSWDSLVFGSQKAVLVEFWAPWCGP 120
              S SP      FR S  +C+A  AV +V +V +SSW   V  S+  V+V+FWAPWCGP
Sbjct: 61  SVSSSSPRQ----FRYSSVVCKASEAVKEVQDVNDSSWKEFVLESEVPVMVDFWAPWCGP 120

Query: 121 CKIIEPVIKDLAQEYAGKIVCLKLNTDLSPNVASKYGIRSIPTVLFFKNGEKRESVSGAV 180
           CK+I PVI +LA+EY+GKI   KLNTD +P +A++Y IRSIPTVLFFKNGE++ES+ GAV
Sbjct: 121 CKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVLFFKNGERKESIIGAV 178

Query: 181 PRSTLAATIDKY 185
           P+STL  +I+KY
Sbjct: 181 PKSTLTDSIEKY 178

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BLAST of CmaCh15G006320 vs. Swiss-Prot
Match: TRXM_PEA (Thioredoxin M-type, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 3.5e-41
Identity = 75/113 (66.37%), Postives = 94/113 (83.19%), Query Frame = 1


Query: 72  LCRARGAVDDVPEVTESSWDSLVFGSQKAVLVEFWAPWCGPCKIIEPVIKDLAQEYAGKI 131
           L  AR AV++V  V +SSWD LV GS+  VLV+FWAPWCGPC++I P+I +LA+EYAGKI
Sbjct: 59  LLHAREAVNEVQVVNDSSWDELVIGSETPVLVDFWAPWCGPCRMIAPIIDELAKEYAGKI 118

Query: 132 VCLKLNTDLSPNVASKYGIRSIPTVLFFKNGEKRESVSGAVPRSTLAATIDKY 185
            C KLNTD SPN A+KYGIRSIPTVLFFKNGE+++SV GAVP++TL+  ++KY
Sbjct: 119 KCYKLNTDESPNTATKYGIRSIPTVLFFKNGERKDSVIGAVPKATLSEKVEKY 171

[Close]

BLAST of CmaCh15G006320 vs. Swiss-Prot
Match: TRXM5_ORYSJ (Thioredoxin M5, chloroplastic OS=Oryza sativa subsp. japonica GN=TRXM PE=2 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 1.8e-40
Identity = 74/112 (66.07%), Postives = 89/112 (79.46%), Query Frame = 1


Query: 73  CRARGAVDDVPEVTESSWDSLVFGSQKAVLVEFWAPWCGPCKIIEPVIKDLAQEYAGKIV 132
           C+    VD+V    E +WDS+V GS+  VLVEFWAPWCGPC++I PVI +LA+EY GKI 
Sbjct: 58  CQCSNVVDEVVVADEKNWDSMVLGSEAPVLVEFWAPWCGPCRMIAPVIDELAKEYVGKIK 117

Query: 133 CLKLNTDLSPNVASKYGIRSIPTVLFFKNGEKRESVSGAVPRSTLAATIDKY 185
           C K+NTD SPN+A+ YGIRSIPTVL FKNGEK+ESV GAVP++TLA  IDKY
Sbjct: 118 CCKVNTDDSPNIATNYGIRSIPTVLMFKNGEKKESVIGAVPKTTLATIIDKY 169

[Close]

BLAST of CmaCh15G006320 vs. Swiss-Prot
Match: TRXM_MAIZE (Thioredoxin M-type, chloroplastic OS=Zea mays GN=TRM1 PE=2 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 3.9e-40
Identity = 75/118 (63.56%), Postives = 91/118 (77.12%), Query Frame = 1


Query: 67  RKSFSLCRARGAVDDVPEVTESSWDSLVFGSQKAVLVEFWAPWCGPCKIIEPVIKDLAQE 126
           R+   +C+++ AVD+V    E +WD LV   +  VLVEFWAPWCGPC++I PVI +LA++
Sbjct: 46  RRPRHVCQSKNAVDEVVVADEKNWDGLVMACETPVLVEFWAPWCGPCRMIAPVIDELAKD 105

Query: 127 YAGKIVCLKLNTDLSPNVASKYGIRSIPTVLFFKNGEKRESVSGAVPRSTLAATIDKY 185
           YAGKI C K+NTD SPNVAS YGIRSIPTVL FK GEK+ESV GAVP+STL   IDKY
Sbjct: 106 YAGKITCCKVNTDDSPNVASTYGIRSIPTVLIFKGGEKKESVIGAVPKSTLTTLIDKY 163

[Close]

BLAST of CmaCh15G006320 vs. Swiss-Prot
Match: TRXM_WHEAT (Thioredoxin M-type, chloroplastic OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 9.7e-39
Identity = 71/125 (56.80%), Postives = 93/125 (74.40%), Query Frame = 1


Query: 60  STIISTFRKSFSLCRARGAVDDVPEVTESSWDSLVFGSQKAVLVEFWAPWCGPCKIIEPV 119
           S +++  R S  +C+ +  VD+V    E +WD++V   +  VLVEFWAPWCGPC++I PV
Sbjct: 48  SALVAARRPSRFVCKCKNVVDEVIVADEKNWDNMVIACESPVLVEFWAPWCGPCRMIAPV 107

Query: 120 IKDLAQEYAGKIVCLKLNTDLSPNVASKYGIRSIPTVLFFKNGEKRESVSGAVPRSTLAA 179
           I +LA++Y GKI C K+NTD  PN+AS YGIRSIPTVL FK+GEK+ESV GAVP++TL  
Sbjct: 108 IDELAKDYVGKIKCCKVNTDDCPNIASTYGIRSIPTVLMFKDGEKKESVIGAVPKTTLCT 167

Query: 180 TIDKY 185
            IDKY
Sbjct: 168 IIDKY 172

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BLAST of CmaCh15G006320 vs. TrEMBL
Match: A0A0A0KIC1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G343710 PE=4 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 4.8e-61
Identity = 138/193 (71.50%), Postives = 149/193 (77.20%), Query Frame = 1


Query: 1   MALDNCVQLSTAAATATAMCATTPRIKSHPFCY--NHHLNT---TLTLQRKLPISTSGNK 60
           MALDNC+QLSTAA     MCA     KSH F    N+   T   TL+LQR        NK
Sbjct: 1   MALDNCIQLSTAAT----MCAAASIPKSHYFSSTTNYPQKTSFSTLSLQRL-------NK 60

Query: 61  SFSPSTIISTFRKSFSL-CRARGAVDDVPEVTESSWDSLVFGSQKAVLVEFWAPWCGPCK 120
           S +P     TFRK FSL C+ARGAVDDV EVTESSW++LV  +QKAVLVEFWAPWCGPCK
Sbjct: 61  SPTP-----TFRKPFSLTCQARGAVDDVKEVTESSWNNLVVENQKAVLVEFWAPWCGPCK 120

Query: 121 IIEPVIKDLAQEYAGKIVCLKLNTDLSPNVASKYGIRSIPTVLFFKNGEKRESVSGAVPR 180
           IIEPVIK+LA EYAGKIVCLKLNTDLSPNVASKYGIRSIPTVLFFKNGEKRESV GAVP+
Sbjct: 121 IIEPVIKELAAEYAGKIVCLKLNTDLSPNVASKYGIRSIPTVLFFKNGEKRESVIGAVPK 177

Query: 181 STLAATIDKYAEV 188
           STL A+IDKY EV
Sbjct: 181 STLTASIDKYIEV 177

[Close]

BLAST of CmaCh15G006320 vs. TrEMBL
Match: A0A0D2QMS1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G251900 PE=4 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 3.9e-47
Identity = 105/192 (54.69%), Postives = 132/192 (68.75%), Query Frame = 1


Query: 1   MALDNCVQLSTAAATATAMCATTPRIKSHPFCYNHHLNTTLTLQRKLPISTSGNK---SF 60
           MAL+NC QLS+   T T +  +          Y H +++   +   LP     NK   SF
Sbjct: 1   MALENCFQLSSVCTTRTCVMQS----------YRHQISSVEKIH--LPTFRGFNKPNLSF 60

Query: 61  SPSTIIS---TFRKSFSLCRARGAVDDVPEVTESSWDSLVFGSQKAVLVEFWAPWCGPCK 120
           S S + S     +KS  +C+A  AVD V  VTE+SW  LV GS+  VLVEFWAPWCGPC+
Sbjct: 61  SSSFVHSFKGRCQKSRLICKASEAVDQVEAVTEASWGELVLGSETPVLVEFWAPWCGPCR 120

Query: 121 IIEPVIKDLAQEYAGKIVCLKLNTDLSPNVASKYGIRSIPTVLFFKNGEKRESVSGAVPR 180
           +IEPVI DLA+EYAGKI C KLNTD SPN+A+++GIRSIPT+LFFKNGEK+ES+ GAVP+
Sbjct: 121 MIEPVIADLAKEYAGKIACYKLNTDESPNIATEFGIRSIPTMLFFKNGEKKESIIGAVPK 180

Query: 181 STLAATIDKYAE 187
           STLAA+IDKY +
Sbjct: 181 STLAASIDKYVD 180

[Close]

BLAST of CmaCh15G006320 vs. TrEMBL
Match: A0A061FPW8_THECC (Thioredoxin M-type 4 OS=Theobroma cacao GN=TCM_035372 PE=4 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 5.1e-47
Identity = 102/187 (54.55%), Postives = 131/187 (70.05%), Query Frame = 1


Query: 1   MALDNCVQLSTAAATATAMCATTPRIKSHPFCYNHHLNTTLTLQR-KLPISTSGNKSFSP 60
           MAL+NC QLS+A  T  ++  +     S       HL T     +  L  ++S + S   
Sbjct: 1   MALENCFQLSSACTTRASVLQSYHHFSS---VEKVHLPTFRGFNKPNLSFTSSSSSSSLA 60

Query: 61  STIISTFRKSFSLCRARGAVDDVPEVTESSWDSLVFGSQKAVLVEFWAPWCGPCKIIEPV 120
            +     +KS  +C+AR AVD+V  VTESSW  LV GS+  VLVEFWAPWCGPC++IEPV
Sbjct: 61  HSFTRRSQKSRLICKAREAVDEVAVVTESSWGELVVGSETPVLVEFWAPWCGPCRMIEPV 120

Query: 121 IKDLAQEYAGKIVCLKLNTDLSPNVASKYGIRSIPTVLFFKNGEKRESVSGAVPRSTLAA 180
           I +LA+EYAGKI C KLNTD SPN+A+++GIRSIPT+LFFK+GEK+ES+ GAVP+STLAA
Sbjct: 121 IAELAKEYAGKIACYKLNTDDSPNIATEFGIRSIPTMLFFKDGEKKESIIGAVPKSTLAA 180

Query: 181 TIDKYAE 187
           TIDKY +
Sbjct: 181 TIDKYVD 184

[Close]

BLAST of CmaCh15G006320 vs. TrEMBL
Match: M1QS43_9CARY (Chloroplast thioredoxin M-type 5 OS=Tamarix hispida GN=Trx5 PE=2 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 8.8e-47
Identity = 99/188 (52.66%), Postives = 132/188 (70.21%), Query Frame = 1


Query: 1   MALDNCVQLSTAAATATAMCATTPRIK-SHPFCYNHHLNTTLTLQRKLPISTSGNKSFSP 60
           MA++NC  LS A +TA A   T   I  S   C++  +   LT    L  S+S + +F  
Sbjct: 1   MAMENCFYLSPATSTARAAFITKSMIAPSKGRCHSPSIYQGLTKPTSL-FSSSSSSAFPS 60

Query: 61  STIISTFRKSFSLCRARGAVDDVPEVTESSWDSLVFGSQKAVLVEFWAPWCGPCKIIEPV 120
           +      R+S  +C+A GA+D+V  VT+SSW++LV GS+  VLVEFWAPWCGPC++I PV
Sbjct: 61  ALAFEKTRRSSFVCKASGAIDEVQAVTDSSWENLVIGSETPVLVEFWAPWCGPCRMIAPV 120

Query: 121 IKDLAQEYAGKIVCLKLNTDLSPNVASKYGIRSIPTVLFFKNGEKRESVSGAVPRSTLAA 180
           + +LA+E+AGKI C K+NTD  PN+A+KYGIRSIPTVLFFKNGE++ES  GAVP+STLA 
Sbjct: 121 VNELAKEWAGKIACYKVNTDDCPNIATKYGIRSIPTVLFFKNGERKESAIGAVPKSTLAD 180

Query: 181 TIDKYAEV 188
           +I+KY  V
Sbjct: 181 SIEKYLAV 187

[Close]

BLAST of CmaCh15G006320 vs. TrEMBL
Match: A0A151TYS0_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_004793 PE=4 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 1.1e-46
Identity = 101/189 (53.44%), Postives = 132/189 (69.84%), Query Frame = 1


Query: 1   MALDNCVQLSTAAATATAMCATTPRIKSHPFCYNHHL--NTTLTLQRKLPISTSGNKSFS 60
           MAL+NCV+++T    A        +   HPF     L   T    ++ L  ST  N S  
Sbjct: 1   MALENCVRVATVGTGARPQ-----QCLLHPFSKREKLVFPTFGGFKKSLSKSTLSNASSL 60

Query: 61  PSTIISTFRKSFSLCRARGAVDDVPEVTESSWDSLVFGSQKAVLVEFWAPWCGPCKIIEP 120
            S      RKS  +C+AR AV++V  VT+SSW+SLV  S+  VLV+FWAPWCGPC++I P
Sbjct: 61  YSAAAGKNRKSRFICKAREAVNEVRVVTDSSWNSLVIESETPVLVDFWAPWCGPCRMIAP 120

Query: 121 VIKDLAQEYAGKIVCLKLNTDLSPNVASKYGIRSIPTVLFFKNGEKRESVSGAVPRSTLA 180
           +I +LA+EYAGKIVC KLNTD  PN+A++YGIRSIPTVLFFKNGEK+ES+ GAVP+STL+
Sbjct: 121 IIDELAKEYAGKIVCYKLNTDDCPNIATQYGIRSIPTVLFFKNGEKKESIIGAVPKSTLS 180

Query: 181 ATIDKYAEV 188
           AT++KYA++
Sbjct: 181 ATVEKYADI 184

[Close]

BLAST of CmaCh15G006320 vs. TAIR10
Match: AT4G03520.1 (AT4G03520.1 Thioredoxin superfamily protein)

HSP 1 Score: 146.7 bits (369), Expect = 1.4e-35
Identity = 64/135 (47.41%), Postives = 94/135 (69.63%), Query Frame = 1


Query: 56  SFSPSTIISTFRKSFS------LCRARGAVDDVPEVTESSWDSLVFGSQKAVLVEFWAPW 115
           S SP+++ S  +   S      +C A+    D+  V +S+WDSLV  +   V+V+FWAPW
Sbjct: 50  SLSPASLTSIHQPRVSRLRRAVVCEAQETTTDIQVVNDSTWDSLVLKATGPVVVDFWAPW 109

Query: 116 CGPCKIIEPVIKDLAQEYAGKIVCLKLNTDLSPNVASKYGIRSIPTVLFFKNGEKRESVS 175
           CGPCK+I+P++ DLAQ Y GKI   KLNTD SPN   +YG+RSIPT++ F  GEK++++ 
Sbjct: 110 CGPCKMIDPLVNDLAQHYTGKIKFYKLNTDESPNTPGQYGVRSIPTIMIFVGGEKKDTII 169

Query: 176 GAVPRSTLAATIDKY 185
           GAVP++TL +++DK+
Sbjct: 170 GAVPKTTLTSSLDKF 184

[Close]

BLAST of CmaCh15G006320 vs. TAIR10
Match: AT1G03680.1 (AT1G03680.1 thioredoxin M-type 1)

HSP 1 Score: 143.7 bits (361), Expect = 1.2e-34
Identity = 61/129 (47.29%), Postives = 92/129 (71.32%), Query Frame = 1


Query: 56  SFSPSTIISTFRKSFSLCRARGAVDDVPEVTESSWDSLVFGSQKAVLVEFWAPWCGPCKI 115
           S S ++ +S  R+   +C A+     +P V +S+WDSLV  + + V V+FWAPWCGPCK+
Sbjct: 51  SLSKNSRVSRLRRGV-ICEAQDTATGIPVVNDSTWDSLVLKADEPVFVDFWAPWCGPCKM 110

Query: 116 IEPVIKDLAQEYAGKIVCLKLNTDLSPNVASKYGIRSIPTVLFFKNGEKRESVSGAVPRS 175
           I+P++ +LAQ+YAG+    KLNTD SP    +YG+RSIPT++ F NGEK++++ GAV + 
Sbjct: 111 IDPIVNELAQKYAGQFKFYKLNTDESPATPGQYGVRSIPTIMIFVNGEKKDTIIGAVSKD 170

Query: 176 TLAATIDKY 185
           TLA +I+K+
Sbjct: 171 TLATSINKF 178

[Close]

BLAST of CmaCh15G006320 vs. TAIR10
Match: AT3G15360.1 (AT3G15360.1 thioredoxin M-type 4)

HSP 1 Score: 139.8 bits (351), Expect = 1.7e-33
Identity = 58/107 (54.21%), Postives = 81/107 (75.70%), Query Frame = 1


Query: 78  AVDDVPEVTESSWDSLVFGSQKAVLVEFWAPWCGPCKIIEPVIKDLAQEYAGKIVCLKLN 137
           A  +VP +++S W + V  S   VLVEFWAPWCGPC++I P++  LA+++AGK    K+N
Sbjct: 84  AAVEVPNLSDSEWQTKVLESDVPVLVEFWAPWCGPCRMIHPIVDQLAKDFAGKFKFYKIN 143

Query: 138 TDLSPNVASKYGIRSIPTVLFFKNGEKRESVSGAVPRSTLAATIDKY 185
           TD SPN A++YGIRS+PTV+ FK GEK++S+ GAVPR TL  TI+++
Sbjct: 144 TDESPNTANRYGIRSVPTVIIFKGGEKKDSIIGAVPRETLEKTIERF 190

[Close]

BLAST of CmaCh15G006320 vs. TAIR10
Match: AT2G15570.2 (AT2G15570.2 Thioredoxin superfamily protein)

HSP 1 Score: 109.0 bits (271), Expect = 3.2e-24
Identity = 63/169 (37.28%), Postives = 94/169 (55.62%), Query Frame = 1


Query: 28  SHPFCYN----HHLNTTLTLQRKLPISTSGNKSFSPSTIISTFRKSF---SLCRARGA-- 87
           S   C+N    H      +  R  P++     SFSP ++  + R+S    S  R R +  
Sbjct: 7   SSSICFNPTRFHTARHISSPSRLFPVT-----SFSPRSLRFSDRRSLLSSSASRLRLSPL 66

Query: 88  -VDD---VPEVTESSWDSLVFGSQKAVLVEFWAPWCGPCKIIEPVIKDLAQEYAGKIVCL 147
            V D     EVT+ SW+  V  S+  VLVEF+  WCGPC+++  +I ++A +YAGK+ C 
Sbjct: 67  CVRDSRAAAEVTQRSWEDSVLKSETPVLVEFYTSWCGPCRMVHRIIDEIAGDYAGKLNCY 126

Query: 148 KLNTDLSPNVASKYGIRSIPTVLFFKNGEKRESVSGAVPRSTLAATIDK 184
            LN D    VA +Y I+++P VL FKNGEKRES+ G +P+    + I++
Sbjct: 127 LLNADNDLPVAEEYEIKAVPVVLLFKNGEKRESIMGTMPKEFYISAIER 170

[Close]

BLAST of CmaCh15G006320 vs. TAIR10
Match: AT1G43560.1 (AT1G43560.1 thioredoxin Y2)

HSP 1 Score: 85.5 bits (210), Expect = 3.8e-17
Identity = 41/138 (29.71%), Postives = 79/138 (57.25%), Query Frame = 1


Query: 50  STSGNKSFSPSTIISTFRKSFSLCRARGAVDDVPEVTESSWDSLVFGSQKAVLVEFWAPW 109
           S S +  F+P T+ +  +++F+                 S+D L+  S K VLV+F+A W
Sbjct: 45  SPSSSTRFAPLTVRAAKKQTFN-----------------SFDDLLQNSDKPVLVDFYATW 104

Query: 110 CGPCKIIEPVIKDLAQEYAGKIVCLKLNTDLSPNVASKYGIRSIPTVLFFKNGEKRESVS 169
           CGPC+++ P++ ++++     I  +K++T+  P++A+KY I ++PT + FK+G+  +   
Sbjct: 105 CGPCQLMVPILNEVSETLKDIIAVVKIDTEKYPSLANKYQIEALPTFILFKDGKLWDRFE 164

Query: 170 GAVPRSTLAATIDKYAEV 188
           GA+P + L   I+   +V
Sbjct: 165 GALPANQLVERIENSLQV 165

[Close]

BLAST of CmaCh15G006320 vs. NCBI nr
Match: gi|449466020|ref|XP_004150725.1| (PREDICTED: thioredoxin M-type, chloroplastic-like [Cucumis sativus])

HSP 1 Score: 242.3 bits (617), Expect = 6.9e-61
Identity = 138/193 (71.50%), Postives = 149/193 (77.20%), Query Frame = 1


Query: 1   MALDNCVQLSTAAATATAMCATTPRIKSHPFCY--NHHLNT---TLTLQRKLPISTSGNK 60
           MALDNC+QLSTAA     MCA     KSH F    N+   T   TL+LQR        NK
Sbjct: 1   MALDNCIQLSTAAT----MCAAASIPKSHYFSSTTNYPQKTSFSTLSLQRL-------NK 60

Query: 61  SFSPSTIISTFRKSFSL-CRARGAVDDVPEVTESSWDSLVFGSQKAVLVEFWAPWCGPCK 120
           S +P     TFRK FSL C+ARGAVDDV EVTESSW++LV  +QKAVLVEFWAPWCGPCK
Sbjct: 61  SPTP-----TFRKPFSLTCQARGAVDDVKEVTESSWNNLVVENQKAVLVEFWAPWCGPCK 120

Query: 121 IIEPVIKDLAQEYAGKIVCLKLNTDLSPNVASKYGIRSIPTVLFFKNGEKRESVSGAVPR 180
           IIEPVIK+LA EYAGKIVCLKLNTDLSPNVASKYGIRSIPTVLFFKNGEKRESV GAVP+
Sbjct: 121 IIEPVIKELAAEYAGKIVCLKLNTDLSPNVASKYGIRSIPTVLFFKNGEKRESVIGAVPK 177

Query: 181 STLAATIDKYAEV 188
           STL A+IDKY EV
Sbjct: 181 STLTASIDKYIEV 177

[Close]

BLAST of CmaCh15G006320 vs. NCBI nr
Match: gi|470108568|ref|XP_004290587.1| (PREDICTED: thioredoxin M-type, chloroplastic-like [Fragaria vesca subsp. vesca])

HSP 1 Score: 199.5 bits (506), Expect = 5.1e-48
Identity = 105/189 (55.56%), Postives = 130/189 (68.78%), Query Frame = 1


Query: 1   MALDNCVQLSTAAAT--ATAMCATTPRIKSHPFCYNHHLNTTLTLQRKLPISTSGNKSFS 60
           MAL+NC+QLST   T    A C        HPF     +  T    RK  +  S + SF 
Sbjct: 1   MALENCLQLSTVCTTRVGAAQCY-------HPFSSEKLVVPTCNGLRKSGLKFSSSSSFV 60

Query: 61  PSTIISTFRKSFSLCRARGAVDDVPEVTESSWDSLVFGSQKAVLVEFWAPWCGPCKIIEP 120
                +  +KS  +C+AR AVD V  VT+SSW++LV  S+  VLVEFWAPWCGPC++I P
Sbjct: 61  ARPKSTRLQKSGFVCKAREAVDQVQVVTDSSWNNLVIASENPVLVEFWAPWCGPCRMIAP 120

Query: 121 VIKDLAQEYAGKIVCLKLNTDLSPNVASKYGIRSIPTVLFFKNGEKRESVSGAVPRSTLA 180
           VI +LA+EYAGKI C KLNTD SPN A++YGIRSIPTVLFFKNGEK+ESV GAVP+STL+
Sbjct: 121 VIDELAKEYAGKISCFKLNTDDSPNTATQYGIRSIPTVLFFKNGEKKESVIGAVPKSTLS 180

Query: 181 ATIDKYAEV 188
           ATI+KY ++
Sbjct: 181 ATIEKYVDL 182

[Close]

BLAST of CmaCh15G006320 vs. NCBI nr
Match: gi|1021532908|ref|XP_016163425.1| (PREDICTED: thioredoxin M-type, chloroplastic-like [Arachis ipaensis])

HSP 1 Score: 196.8 bits (499), Expect = 3.3e-47
Identity = 98/187 (52.41%), Postives = 130/187 (69.52%), Query Frame = 1


Query: 1   MALDNCVQLSTAAATATAMCATTPRIKSHPFCYNHHLNTTLTLQRKLPISTSGNKSFSPS 60
           MAL+NC++LST   TA   C + P        ++ +        + +  ST  N + S  
Sbjct: 1   MALENCLRLSTTVGTARIQCLS-PLSSRKKLVFSSYRG----FNKSMLYSTVSNSNPSLY 60

Query: 61  TIISTFRKSFSLCRARGAVDDVPEVTESSWDSLVFGSQKAVLVEFWAPWCGPCKIIEPVI 120
           +   T RKS  +C AR  V++V  VT+SSW+ LV GS+  VLVEFWAPWCGPC++I P+I
Sbjct: 61  STAGTSRKSSFVCNAREKVNEVQVVTDSSWNKLVIGSETPVLVEFWAPWCGPCRMIAPII 120

Query: 121 KDLAQEYAGKIVCLKLNTDLSPNVASKYGIRSIPTVLFFKNGEKRESVSGAVPRSTLAAT 180
            +LA+EYAGKI C K+NTD  PN+A++YGIRSIPTVLFFKNGEK+ESV GAVP+STL+AT
Sbjct: 121 DELAKEYAGKIACYKINTDDCPNIATQYGIRSIPTVLFFKNGEKKESVIGAVPKSTLSAT 180

Query: 181 IDKYAEV 188
           +DKY ++
Sbjct: 181 LDKYVDI 182

[Close]

BLAST of CmaCh15G006320 vs. NCBI nr
Match: gi|823226523|ref|XP_012446083.1| (PREDICTED: thioredoxin M-type, chloroplastic-like [Gossypium raimondii])

HSP 1 Score: 196.1 bits (497), Expect = 5.7e-47
Identity = 105/192 (54.69%), Postives = 132/192 (68.75%), Query Frame = 1


Query: 1   MALDNCVQLSTAAATATAMCATTPRIKSHPFCYNHHLNTTLTLQRKLPISTSGNK---SF 60
           MAL+NC QLS+   T T +  +          Y H +++   +   LP     NK   SF
Sbjct: 1   MALENCFQLSSVCTTRTCVMQS----------YRHQISSVEKIH--LPTFRGFNKPNLSF 60

Query: 61  SPSTIIS---TFRKSFSLCRARGAVDDVPEVTESSWDSLVFGSQKAVLVEFWAPWCGPCK 120
           S S + S     +KS  +C+A  AVD V  VTE+SW  LV GS+  VLVEFWAPWCGPC+
Sbjct: 61  SSSFVHSFKGRCQKSRLICKASEAVDQVEAVTEASWGELVLGSETPVLVEFWAPWCGPCR 120

Query: 121 IIEPVIKDLAQEYAGKIVCLKLNTDLSPNVASKYGIRSIPTVLFFKNGEKRESVSGAVPR 180
           +IEPVI DLA+EYAGKI C KLNTD SPN+A+++GIRSIPT+LFFKNGEK+ES+ GAVP+
Sbjct: 121 MIEPVIADLAKEYAGKIACYKLNTDESPNIATEFGIRSIPTMLFFKNGEKKESIIGAVPK 180

Query: 181 STLAATIDKYAE 187
           STLAA+IDKY +
Sbjct: 181 STLAASIDKYVD 180

[Close]

BLAST of CmaCh15G006320 vs. NCBI nr
Match: gi|1012215945|ref|XP_015934440.1| (PREDICTED: thioredoxin M-type, chloroplastic-like [Arachis duranensis])

HSP 1 Score: 196.1 bits (497), Expect = 5.7e-47
Identity = 98/187 (52.41%), Postives = 130/187 (69.52%), Query Frame = 1


Query: 1   MALDNCVQLSTAAATATAMCATTPRIKSHPFCYNHHLNTTLTLQRKLPISTSGNKSFSPS 60
           MAL+NC++LST   TA   C + P        ++ +        + +  ST  N + S  
Sbjct: 1   MALENCLRLSTTVGTARIQCLS-PLSSRKKLVFSSYRG----FNKSMLHSTVSNSNPSLY 60

Query: 61  TIISTFRKSFSLCRARGAVDDVPEVTESSWDSLVFGSQKAVLVEFWAPWCGPCKIIEPVI 120
           +   T RKS  +C AR  V++V  VT+SSW+ LV GS+  VLVEFWAPWCGPC++I P+I
Sbjct: 61  STAGTSRKSSFVCNAREKVNEVQVVTDSSWNKLVIGSETPVLVEFWAPWCGPCRMIAPII 120

Query: 121 KDLAQEYAGKIVCLKLNTDLSPNVASKYGIRSIPTVLFFKNGEKRESVSGAVPRSTLAAT 180
            +LA+EYAGKI C K+NTD  PN+A++YGIRSIPTVLFFKNGEK+ESV GAVP+STL+AT
Sbjct: 121 DELAKEYAGKIACYKINTDDCPNIATQYGIRSIPTVLFFKNGEKKESVIGAVPKSTLSAT 180

Query: 181 IDKYAEV 188
           +DKY ++
Sbjct: 181 LDKYVDI 182

The following BLAST results are available for this feature:

BLAST of CmaCh15G006320 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TRXM_SPIOL	1.7e-43	49.48	Thioredoxin M-type, chloroplastic OS=Spinacia oleracea PE=1 SV=2	[more]
TRXM_PEA	3.5e-41	66.37	Thioredoxin M-type, chloroplastic OS=Pisum sativum PE=2 SV=1	[more]
TRXM5_ORYSJ	1.8e-40	66.07	Thioredoxin M5, chloroplastic OS=Oryza sativa subsp. japonica GN=TRXM PE=2 SV=1	[more]
TRXM_MAIZE	3.9e-40	63.56	Thioredoxin M-type, chloroplastic OS=Zea mays GN=TRM1 PE=2 SV=1	[more]
TRXM_WHEAT	9.7e-39	56.80	Thioredoxin M-type, chloroplastic OS=Triticum aestivum PE=2 SV=1	[more]

BLAST of CmaCh15G006320 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KIC1_CUCSA	4.8e-61	71.50	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G343710 PE=4 SV=1	[more]
A0A0D2QMS1_GOSRA	3.9e-47	54.69	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G251900 PE=4 SV=1	[more]
A0A061FPW8_THECC	5.1e-47	54.55	Thioredoxin M-type 4 OS=Theobroma cacao GN=TCM_035372 PE=4 SV=1	[more]
M1QS43_9CARY	8.8e-47	52.66	Chloroplast thioredoxin M-type 5 OS=Tamarix hispida GN=Trx5 PE=2 SV=1	[more]
A0A151TYS0_CAJCA	1.1e-46	53.44	Uncharacterized protein OS=Cajanus cajan GN=KK1_004793 PE=4 SV=1	[more]

BLAST of CmaCh15G006320 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G03520.1	1.4e-35	47.41	Thioredoxin superfamily protein	[more]
AT1G03680.1	1.2e-34	47.29	thioredoxin M-type 1	[more]
AT3G15360.1	1.7e-33	54.21	thioredoxin M-type 4	[more]
AT2G15570.2	3.2e-24	37.28	Thioredoxin superfamily protein	[more]
AT1G43560.1	3.8e-17	29.71	thioredoxin Y2	[more]

BLAST of CmaCh15G006320 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449466020\|ref\|XP_004150725.1\|	6.9e-61	71.50	PREDICTED: thioredoxin M-type, chloroplastic-like [Cucumis sativus]	[more]
gi\|470108568\|ref\|XP_004290587.1\|	5.1e-48	55.56	PREDICTED: thioredoxin M-type, chloroplastic-like [Fragaria vesca subsp. vesca]	[more]
gi\|1021532908\|ref\|XP_016163425.1\|	3.3e-47	52.41	PREDICTED: thioredoxin M-type, chloroplastic-like [Arachis ipaensis]	[more]
gi\|823226523\|ref\|XP_012446083.1\|	5.7e-47	54.69	PREDICTED: thioredoxin M-type, chloroplastic-like [Gossypium raimondii]	[more]
gi\|1012215945\|ref\|XP_015934440.1\|	5.7e-47	52.41	PREDICTED: thioredoxin M-type, chloroplastic-like [Arachis duranensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR005746	Thioredoxin
IPR012336	Thioredoxin-like_fold
IPR013766	Thioredoxin_domain
IPR017937	Thioredoxin_CS

Vocabulary: **Biological Process**
Term	Definition
GO:0006662	glycerol ether metabolic process
GO:0045454	cell redox homeostasis

Vocabulary: **Molecular Function**
Term	Definition
GO:0015035	protein disulfide oxidoreductase activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045454	cell redox homeostasis
biological_process	GO:0006662	glycerol ether metabolic process
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0034599	cellular response to oxidative stress
biological_process	GO:0042744	hydrogen peroxide catabolic process
biological_process	GO:0009657	plastid organization
cellular_component	GO:0005623	cell
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0015035	protein disulfide oxidoreductase activity
molecular_function	GO:0016671	oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor
molecular_function	GO:0047134	protein-disulfide reductase activity
molecular_function	GO:0004791	thioredoxin-disulfide reductase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh15G006320.1	CmaCh15G006320.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005746	Thioredoxin	PANTHER	PTHR10438	THIOREDOXIN	coord: 2..186 score: 7.0
IPR005746	Thioredoxin	TIGRFAMs	TIGR01068	TIGR01068	coord: 86..183 score: 2.5
IPR012336	Thioredoxin-like fold	GENE3D	G3DSA:3.40.30.10		coord: 78..185 score: 1.7
IPR012336	Thioredoxin-like fold	unknown	SSF52833	Thioredoxin-like	coord: 70..185 score: 4.81
IPR013766	Thioredoxin domain	PFAM	PF00085	Thioredoxin	coord: 82..183 score: 3.6
IPR013766	Thioredoxin domain	PROFILE	PS51352	THIOREDOXIN_2	coord: 61..186 score: 15
IPR017937	Thioredoxin, conserved site	PROSITE	PS00194	THIOREDOXIN_1	coord: 102..120 scor
None	No IPR available	PRINTS	PR00421	THIOREDOXIN	coord: 109..118 score: 2.6E-9coord: 149..160 score: 2.6E-9coord: 101..109 score: 2.
None	No IPR available	PANTHER	PTHR10438:SF290	SUBFAMILY NOT NAMED	coord: 2..186 score: 7.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh15G006320	Cucsa.077150	Cucumber (Gy14) v1	cgycmaB0130
CmaCh15G006320	Cla013870	Watermelon (97103) v1	cmawmB260
CmaCh15G006320	Csa6G343710	Cucumber (Chinese Long) v2	cmacuB311
CmaCh15G006320	MELO3C008421	Melon (DHL92) v3.5.1	cmameB268
CmaCh15G006320	ClCG08G006360	Watermelon (Charleston Gray)	cmawcgB273
CmaCh15G006320	CSPI06G18180	Wild cucumber (PI 183967)	cmacpiB317
CmaCh15G006320	CmoCh04G025340	Cucurbita moschata (Rifu)	cmacmoB309
CmaCh15G006320	CmoCh15G006400	Cucurbita moschata (Rifu)	cmacmoB287
CmaCh15G006320	Lsi08G005140	Bottle gourd (USVL1VR-Ls)	cmalsiB294
CmaCh15G006320	Cp4.1LG01g20890	Cucurbita pepo (Zucchini)	cmacpeB318
CmaCh15G006320	MELO3C008421.2	Melon (DHL92) v3.6.1	cmamedB307
CmaCh15G006320	CsaV3_6G031060	Cucumber (Chinese Long) v3	cmacucB0365
CmaCh15G006320	Cla97C08G149150	Watermelon (97103) v2	cmawmbB319
CmaCh15G006320	Bhi04G001429	Wax gourd	cmawgoB0391
CmaCh15G006320	CsGy6G017640	Cucumber (Gy14) v2	cgybcmaB743
CmaCh15G006320	Carg01574	Silver-seed gourd	carcmaB1148
CmaCh15G006320	Carg15765	Silver-seed gourd	carcmaB0087

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh15G006320	CmaCh04G024160	Cucurbita maxima (Rimu)	cmacmaB325

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh15G006320	Cucurbita pepo (Zucchini)	cmacpeB305
CmaCh15G006320	Cucurbita pepo (Zucchini)	cmacpeB335
CmaCh15G006320	Cucurbita maxima (Rimu)	cmacmaB040
CmaCh15G006320	Cucurbita moschata (Rifu)	cmacmoB283