CmaCh04G024160 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh04G024160
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Thioredoxin m family protein
Location	Cma_Chr04 : 16678893 .. 16679965 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCGCTTCGGTTTCATCCATTCATAAAATGAACATAACAGCTCCCTGTTGCCCTAAAAGCTTTATCCATCTCCAATGGCGCTCGATAACTGTATACAACTGAGCACCGCCGCCGCCATGTATGGCACCACTTCCATCCCCAAATCTCACCCATTCTCTTCCACTTTCCACCAAAAGACAACCCTCTCCCTTCAACGCCTCAACAAATTCCCCACTTCCATTGCGCGATTCAAGTCCTTCTCTCCTTCCACCTCTGTCTCCACTTTCGGAAAATCCCGCTCCGTCACCTGTAAAGCTCGCGGCGCCGTTGACGACGGTTAGTCACCCGATCTAATCTTCTCGGTATAACAAGTTTTGTTTACACAATCGAACATTCTTGTTTCTCCGCATTCTAGGGTTTAGAAATTCGACTCTGTTTTTCTCGTAAATTGCAGTGAAAGAGGTTACAGAGTCGAGCTGGAATGAGTTGGTGGTGGAGAGTGAAAAGACGGTGCTGGTGGAATTTTGGGCGCCGTGGTGTGGACCGTGTAAGATGATTGAGCCAGTGATAAGGGAATTGGCGCAGGATTATGCAGGGAAAATCGTGTGTTTAAAGCTCAATACAGACGCCAGCCCAAATGTGGCCTCGAAATATGGGATTAGAAGCATTCCCACAGTTCTGTTCTTCAAGAATGGACAGAAGAGAGAGGGCGTCATTGGGGCTGTACCCAAATCCACCTTGTCCGCCTCCATTGATAAGTATCTCGAGGTTTGAAGAATCCCATTCATTAGAGATGGTTTTCGAATCTTCTTCTTGTTCTTGTTCTTGTTGTTCATCTTGTATATGAATATCATCATCATGTTGTGTAAAAATTGGAAAACTCATAATCGTTTCATCAAGAATCTCTTCTTTAATTCTCTGTGAATTTGAAACTTGTTTGAGTTTGTGAATTTGAAACTTTTGTGCCCATTTTTTTCATTCTTGGCGGAAATCTATATTACCTGTTTATAGAATTGAGAAGAATTTGTGAACATTGCAGGGAC

mRNA sequence

AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCGCTTCGGTTTCATCCATTCATAAAATGAACATAACAGCTCCCTGTTGCCCTAAAAGCTTTATCCATCTCCAATGGCGCTCGATAACTGTATACAACTGAGCACCGCCGCCGCCATGTATGGCACCACTTCCATCCCCAAATCTCACCCATTCTCTTCCACTTTCCACCAAAAGACAACCCTCTCCCTTCAACGCCTCAACAAATTCCCCACTTCCATTGCGCGATTCAAGTCCTTCTCTCCTTCCACCTCTGTCTCCACTTTCGGAAAATCCCGCTCCGTCACCTGTAAAGCTCGCGGCGCCGTTGACGACGTGAAAGAGGTTACAGAGTCGAGCTGGAATGAGTTGGTGGTGGAGAGTGAAAAGACGGTGCTGGTGGAATTTTGGGCGCCGTGGTGTGGACCGTGTAAGATGATTGAGCCAGTGATAAGGGAATTGGCGCAGGATTATGCAGGGAAAATCGTGTGTTTAAAGCTCAATACAGACGCCAGCCCAAATGTGGCCTCGAAATATGGGATTAGAAGCATTCCCACAGTTCTGTTCTTCAAGAATGGACAGAAGAGAGAGGGCGTCATTGGGGCTGTACCCAAATCCACCTTGTCCGCCTCCATTGATAAGTATCTCGAGGTTTGAAGAATCCCATTCATTAGAGATGGTTTTCGAATCTTCTTCTTGTTCTTGTTCTTGTTGTTCATCTTGTATATGAATATCATCATCATGTTGTGTAAAAATTGGAAAACTCATAATCGTTTCATCAAGAATCTCTTCTTTAATTCTCTGTGAATTTGAAACTTGTTTGAGTTTGTGAATTTGAAACTTTTGTGCCCATTTTTTTCATTCTTGGCGGAAATCTATATTACCTGTTTATAGAATTGAGAAGAATTTGTGAACATTGCAGGGAC

Coding sequence (CDS)

ATGGCGCTCGATAACTGTATACAACTGAGCACCGCCGCCGCCATGTATGGCACCACTTCCATCCCCAAATCTCACCCATTCTCTTCCACTTTCCACCAAAAGACAACCCTCTCCCTTCAACGCCTCAACAAATTCCCCACTTCCATTGCGCGATTCAAGTCCTTCTCTCCTTCCACCTCTGTCTCCACTTTCGGAAAATCCCGCTCCGTCACCTGTAAAGCTCGCGGCGCCGTTGACGACGTGAAAGAGGTTACAGAGTCGAGCTGGAATGAGTTGGTGGTGGAGAGTGAAAAGACGGTGCTGGTGGAATTTTGGGCGCCGTGGTGTGGACCGTGTAAGATGATTGAGCCAGTGATAAGGGAATTGGCGCAGGATTATGCAGGGAAAATCGTGTGTTTAAAGCTCAATACAGACGCCAGCCCAAATGTGGCCTCGAAATATGGGATTAGAAGCATTCCCACAGTTCTGTTCTTCAAGAATGGACAGAAGAGAGAGGGCGTCATTGGGGCTGTACCCAAATCCACCTTGTCCGCCTCCATTGATAAGTATCTCGAGGTTTGA

Protein sequence

MALDNCIQLSTAAAMYGTTSIPKSHPFSSTFHQKTTLSLQRLNKFPTSIARFKSFSPSTSVSTFGKSRSVTCKARGAVDDVKEVTESSWNELVVESEKTVLVEFWAPWCGPCKMIEPVIRELAQDYAGKIVCLKLNTDASPNVASKYGIRSIPTVLFFKNGQKREGVIGAVPKSTLSASIDKYLEV

Homology

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BLAST of CmaCh04G024160 vs. Swiss-Prot
Match: TRXM_SPIOL (Thioredoxin M-type, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 184.1 bits (466), Expect = 1.4e-45
Identity = 100/188 (53.19%), Postives = 133/188 (70.74%), Query Frame = 1


Query: 1   MALDNCIQLSTAAAMYGTTSIPKSHPF----SSTFHQKTTLSLQRLNKFPTSIARFKSFS 60
           MA++NC+QLST+A++ GT ++ KSH      SS  +  T   L+R   FP   +   S S
Sbjct: 1   MAIENCLQLSTSASV-GTVAV-KSHVHHLQPSSKVNVPTFRGLKR--SFPALSSSVSSSS 60

Query: 61  PSTSVSTFGKSRSVTCKARGAVDDVKEVTESSWNELVVESEKTVLVEFWAPWCGPCKMIE 120
           P        +  SV CKA  AV +V++V +SSW E V+ESE  V+V+FWAPWCGPCK+I 
Sbjct: 61  PRQF-----RYSSVVCKASEAVKEVQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIA 120

Query: 121 PVIRELAQDYAGKIVCLKLNTDASPNVASKYGIRSIPTVLFFKNGQKREGVIGAVPKSTL 180
           PVI ELA++Y+GKI   KLNTD +P +A++Y IRSIPTVLFFKNG+++E +IGAVPKSTL
Sbjct: 121 PVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVLFFKNGERKESIIGAVPKSTL 179

Query: 181 SASIDKYL 185
           + SI+KYL
Sbjct: 181 TDSIEKYL 179

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BLAST of CmaCh04G024160 vs. Swiss-Prot
Match: TRXM_PEA (Thioredoxin M-type, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 3.5e-41
Identity = 87/168 (51.79%), Postives = 113/168 (67.26%), Query Frame = 1


Query: 30  TFHQKTTLS-------------LQRLNKFPTSIARFKSFSPSTSVSTFGKSRSVTCKARG 89
           + H KT+LS             L   ++   S A   SF+    +        V   AR 
Sbjct: 9   SIHTKTSLSSSIVFIFKGKACLLTSKSRIQESFAELNSFTSLVLLI----ENHVLLHARE 68

Query: 90  AVDDVKEVTESSWNELVVESEKTVLVEFWAPWCGPCKMIEPVIRELAQDYAGKIVCLKLN 149
           AV++V+ V +SSW+ELV+ SE  VLV+FWAPWCGPC+MI P+I ELA++YAGKI C KLN
Sbjct: 69  AVNEVQVVNDSSWDELVIGSETPVLVDFWAPWCGPCRMIAPIIDELAKEYAGKIKCYKLN 128

Query: 150 TDASPNVASKYGIRSIPTVLFFKNGQKREGVIGAVPKSTLSASIDKYL 185
           TD SPN A+KYGIRSIPTVLFFKNG++++ VIGAVPK+TLS  ++KY+
Sbjct: 129 TDESPNTATKYGIRSIPTVLFFKNGERKDSVIGAVPKATLSEKVEKYI 172

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BLAST of CmaCh04G024160 vs. Swiss-Prot
Match: TRXM_MAIZE (Thioredoxin M-type, chloroplastic OS=Zea mays GN=TRM1 PE=2 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 1.0e-40
Identity = 77/113 (68.14%), Postives = 91/113 (80.53%), Query Frame = 1


Query: 72  CKARGAVDDVKEVTESSWNELVVESEKTVLVEFWAPWCGPCKMIEPVIRELAQDYAGKIV 131
           C+++ AVD+V    E +W+ LV+  E  VLVEFWAPWCGPC+MI PVI ELA+DYAGKI 
Sbjct: 52  CQSKNAVDEVVVADEKNWDGLVMACETPVLVEFWAPWCGPCRMIAPVIDELAKDYAGKIT 111

Query: 132 CLKLNTDASPNVASKYGIRSIPTVLFFKNGQKREGVIGAVPKSTLSASIDKYL 185
           C K+NTD SPNVAS YGIRSIPTVL FK G+K+E VIGAVPKSTL+  IDKY+
Sbjct: 112 CCKVNTDDSPNVASTYGIRSIPTVLIFKGGEKKESVIGAVPKSTLTTLIDKYI 164

[Close]

BLAST of CmaCh04G024160 vs. Swiss-Prot
Match: TRXM5_ORYSJ (Thioredoxin M5, chloroplastic OS=Oryza sativa subsp. japonica GN=TRXM PE=2 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 5.6e-39
Identity = 72/113 (63.72%), Postives = 89/113 (78.76%), Query Frame = 1


Query: 72  CKARGAVDDVKEVTESSWNELVVESEKTVLVEFWAPWCGPCKMIEPVIRELAQDYAGKIV 131
           C+    VD+V    E +W+ +V+ SE  VLVEFWAPWCGPC+MI PVI ELA++Y GKI 
Sbjct: 58  CQCSNVVDEVVVADEKNWDSMVLGSEAPVLVEFWAPWCGPCRMIAPVIDELAKEYVGKIK 117

Query: 132 CLKLNTDASPNVASKYGIRSIPTVLFFKNGQKREGVIGAVPKSTLSASIDKYL 185
           C K+NTD SPN+A+ YGIRSIPTVL FKNG+K+E VIGAVPK+TL+  IDKY+
Sbjct: 118 CCKVNTDDSPNIATNYGIRSIPTVLMFKNGEKKESVIGAVPKTTLATIIDKYV 170

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BLAST of CmaCh04G024160 vs. Swiss-Prot
Match: TRXM_WHEAT (Thioredoxin M-type, chloroplastic OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 5.6e-39
Identity = 72/113 (63.72%), Postives = 87/113 (76.99%), Query Frame = 1


Query: 72  CKARGAVDDVKEVTESSWNELVVESEKTVLVEFWAPWCGPCKMIEPVIRELAQDYAGKIV 131
           CK +  VD+V    E +W+ +V+  E  VLVEFWAPWCGPC+MI PVI ELA+DY GKI 
Sbjct: 61  CKCKNVVDEVIVADEKNWDNMVIACESPVLVEFWAPWCGPCRMIAPVIDELAKDYVGKIK 120

Query: 132 CLKLNTDASPNVASKYGIRSIPTVLFFKNGQKREGVIGAVPKSTLSASIDKYL 185
           C K+NTD  PN+AS YGIRSIPTVL FK+G+K+E VIGAVPK+TL   IDKY+
Sbjct: 121 CCKVNTDDCPNIASTYGIRSIPTVLMFKDGEKKESVIGAVPKTTLCTIIDKYI 173

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BLAST of CmaCh04G024160 vs. TrEMBL
Match: A0A0A0KIC1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G343710 PE=4 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 1.3e-69
Identity = 144/191 (75.39%), Postives = 155/191 (81.15%), Query Frame = 1


Query: 1   MALDNCIQLSTAAAMYGTTSIPKSHPFSST--FHQKT---TLSLQRLNKFPTSIARFKSF 60
           MALDNCIQLSTAA M    SIPKSH FSST  + QKT   TLSLQRLNK PT        
Sbjct: 1   MALDNCIQLSTAATMCAAASIPKSHYFSSTTNYPQKTSFSTLSLQRLNKSPTP------- 60

Query: 61  SPSTSVSTFGKSRSVTCKARGAVDDVKEVTESSWNELVVESEKTVLVEFWAPWCGPCKMI 120
                  TF K  S+TC+ARGAVDDVKEVTESSWN LVVE++K VLVEFWAPWCGPCK+I
Sbjct: 61  -------TFRKPFSLTCQARGAVDDVKEVTESSWNNLVVENQKAVLVEFWAPWCGPCKII 120

Query: 121 EPVIRELAQDYAGKIVCLKLNTDASPNVASKYGIRSIPTVLFFKNGQKREGVIGAVPKST 180
           EPVI+ELA +YAGKIVCLKLNTD SPNVASKYGIRSIPTVLFFKNG+KRE VIGAVPKST
Sbjct: 121 EPVIKELAAEYAGKIVCLKLNTDLSPNVASKYGIRSIPTVLFFKNGEKRESVIGAVPKST 177

Query: 181 LSASIDKYLEV 187
           L+ASIDKY+EV
Sbjct: 181 LTASIDKYIEV 177

[Close]

BLAST of CmaCh04G024160 vs. TrEMBL
Match: M5W035_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012199mg PE=4 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 1.6e-48
Identity = 104/186 (55.91%), Postives = 134/186 (72.04%), Query Frame = 1


Query: 1   MALDNCIQLSTAAAMYGTTSIPKSHPFSSTFHQKTTLSLQRLNKFPTSIARFKSFSPSTS 60
           MAL+NC+QLST      TT +  +  +   F  +  L +   N    S+ +F S S    
Sbjct: 1   MALENCLQLSTVC----TTRVGAAQCYQP-FSSRERLIVPTCNGLKKSVLKFSSSSSFAP 60

Query: 61  VSTFGKSRSVTCKARGAVDDVKEVTESSWNELVVESEKTVLVEFWAPWCGPCKMIEPVIR 120
            +   +SR + CKAR AV++V+ V +SSWN LV+ SE  VLVEFWAPWCGPC+MI PVI 
Sbjct: 61  SNKSHRSRFI-CKAREAVNEVQVVNDSSWNNLVIASEDPVLVEFWAPWCGPCRMIAPVID 120

Query: 121 ELAQDYAGKIVCLKLNTDASPNVASKYGIRSIPTVLFFKNGQKREGVIGAVPKSTLSASI 180
           ELA++YAGKI C KLNTD SPN+A++YGIRSIPTVLFFKNG+K+E VIGAVPKSTLSA+I
Sbjct: 121 ELAKEYAGKIACFKLNTDDSPNIATQYGIRSIPTVLFFKNGEKKESVIGAVPKSTLSATI 180

Query: 181 DKYLEV 187
           +KY+++
Sbjct: 181 EKYVDL 180

[Close]

BLAST of CmaCh04G024160 vs. TrEMBL
Match: W9RYW2_9ROSA (Thioredoxin M-type OS=Morus notabilis GN=L484_005391 PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 2.1e-48
Identity = 110/193 (56.99%), Postives = 135/193 (69.95%), Query Frame = 1


Query: 1   MALDNCIQLSTAAAMYGTTSIPKSHPFSSTFHQKTTLSLQRLNKFPTSIARFK--SFSPS 60
           MAL NC+QLST     G  ++   H FSS          ++LN FPT     K  + S S
Sbjct: 1   MALGNCLQLSTTCTRVG--AVQCHHTFSSK---------EKLN-FPTFNKGLKKSALSFS 60

Query: 61  TSVSTFGKSRSVT------CKARGAVDDVKEVTESSWNELVVESEKTVLVEFWAPWCGPC 120
           +S S FG   S T      CKAR A+D+V+ VT+SSWN LV+ SE  VLVEFWAPWCGPC
Sbjct: 61  SSSSPFGYFNSTTRKSLFVCKAREALDEVQVVTDSSWNSLVIASENPVLVEFWAPWCGPC 120

Query: 121 KMIEPVIRELAQDYAGKIVCLKLNTDASPNVASKYGIRSIPTVLFFKNGQKREGVIGAVP 180
           +MI PVI ELA++Y+GK+ C KLNTD  PN+A++YGIRSIPTVLFFKNG+K+E VIGAVP
Sbjct: 121 RMIAPVINELAKEYSGKLDCYKLNTDDCPNIATQYGIRSIPTVLFFKNGEKKESVIGAVP 180

Query: 181 KSTLSASIDKYLE 186
           KSTLS +I+KY+E
Sbjct: 181 KSTLSTTIEKYVE 181

[Close]

BLAST of CmaCh04G024160 vs. TrEMBL
Match: A0A151TS81_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_009116 PE=4 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 3.5e-48
Identity = 107/188 (56.91%), Postives = 135/188 (71.81%), Query Frame = 1


Query: 1   MALDNCIQLSTAAAMYGTTSIPKSHPFSSTFHQKTTLSLQRLNKFPTSIARFKSFSPSTS 60
           MA++NC++L+T A    TT+     PF  T  +K     Q    F  S+   K   PS+ 
Sbjct: 1   MAMENCLRLTTVA----TTTPQCLSPFFPTSREKLVFPTQ--TGFKKSMLNSKVSYPSSL 60

Query: 61  VST---FGKSRSVTCKARGAVDDVKEVTESSWNELVVESEKTVLVEFWAPWCGPCKMIEP 120
            ST   + KSR V CKAR AV++VK V +SSWN LV+ S+  VLVEFWAPWCGPC+MI P
Sbjct: 61  YSTGATYKKSRFV-CKAREAVNEVKVVNDSSWNNLVIASDTPVLVEFWAPWCGPCRMIAP 120

Query: 121 VIRELAQDYAGKIVCLKLNTDASPNVASKYGIRSIPTVLFFKNGQKREGVIGAVPKSTLS 180
           VI ELA++YAGKI C KLNTD SPN A++YGIRSIPTVLFFKNG+K+E +IGAVPKSTLS
Sbjct: 121 VIDELAKEYAGKIACYKLNTDDSPNTATQYGIRSIPTVLFFKNGEKKESIIGAVPKSTLS 180

Query: 181 ASIDKYLE 186
           A+++KY++
Sbjct: 181 ATVEKYVD 181

[Close]

BLAST of CmaCh04G024160 vs. TrEMBL
Match: I3SJS4_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 4.6e-48
Identity = 105/189 (55.56%), Postives = 139/189 (73.54%), Query Frame = 1


Query: 1   MALDNCIQLSTAAAMYGTTSIPKS-HPFSSTFHQKTTLSLQRLNKFPTSIARFKSFSPST 60
           MA+++C+Q++T     GT + P+S HPFS+   +K      R   F    ++  + S  +
Sbjct: 1   MAMESCLQVTTV----GTVARPQSLHPFSA--REKVVFPTYR--GFKKCFSKSATSSNPS 60

Query: 61  SVSTFGKSR--SVTCKARGAVDDVKEVTESSWNELVVESEKTVLVEFWAPWCGPCKMIEP 120
             S  G +R  SV C AR AV++VK VTESSWN+LV+ SE  VLV+FWAPWCGPC+MI P
Sbjct: 61  LYSAAGTNRKFSVICNAREAVNEVKVVTESSWNDLVIASEIPVLVDFWAPWCGPCRMIAP 120

Query: 121 VIRELAQDYAGKIVCLKLNTDASPNVASKYGIRSIPTVLFFKNGQKREGVIGAVPKSTLS 180
           +I ELA++YAGKI C KLNTD SPN+A++YGIRSIPTVLFFKNG+K+E VIGAVPKSTL+
Sbjct: 121 LIDELAKEYAGKIACYKLNTDDSPNIATQYGIRSIPTVLFFKNGEKKESVIGAVPKSTLT 180

Query: 181 ASIDKYLEV 187
           AS++KY+ +
Sbjct: 181 ASLEKYIAI 181

[Close]

BLAST of CmaCh04G024160 vs. TAIR10
Match: AT4G03520.1 (AT4G03520.1 Thioredoxin superfamily protein)

HSP 1 Score: 151.4 bits (381), Expect = 5.6e-37
Identity = 62/117 (52.99%), Postives = 92/117 (78.63%), Query Frame = 1


Query: 68  RSVTCKARGAVDDVKEVTESSWNELVVESEKTVLVEFWAPWCGPCKMIEPVIRELAQDYA 127
           R+V C+A+    D++ V +S+W+ LV+++   V+V+FWAPWCGPCKMI+P++ +LAQ Y 
Sbjct: 69  RAVVCEAQETTTDIQVVNDSTWDSLVLKATGPVVVDFWAPWCGPCKMIDPLVNDLAQHYT 128

Query: 128 GKIVCLKLNTDASPNVASKYGIRSIPTVLFFKNGQKREGVIGAVPKSTLSASIDKYL 185
           GKI   KLNTD SPN   +YG+RSIPT++ F  G+K++ +IGAVPK+TL++S+DK+L
Sbjct: 129 GKIKFYKLNTDESPNTPGQYGVRSIPTIMIFVGGEKKDTIIGAVPKTTLTSSLDKFL 185

[Close]

BLAST of CmaCh04G024160 vs. TAIR10
Match: AT1G03680.1 (AT1G03680.1 thioredoxin M-type 1)

HSP 1 Score: 142.9 bits (359), Expect = 2.0e-34
Identity = 64/131 (48.85%), Postives = 93/131 (70.99%), Query Frame = 1


Query: 54  SFSPSTSVSTFGKSRSVTCKARGAVDDVKEVTESSWNELVVESEKTVLVEFWAPWCGPCK 113
           S S ++ VS     R V C+A+     +  V +S+W+ LV+++++ V V+FWAPWCGPCK
Sbjct: 51  SLSKNSRVSRL--RRGVICEAQDTATGIPVVNDSTWDSLVLKADEPVFVDFWAPWCGPCK 110

Query: 114 MIEPVIRELAQDYAGKIVCLKLNTDASPNVASKYGIRSIPTVLFFKNGQKREGVIGAVPK 173
           MI+P++ ELAQ YAG+    KLNTD SP    +YG+RSIPT++ F NG+K++ +IGAV K
Sbjct: 111 MIDPIVNELAQKYAGQFKFYKLNTDESPATPGQYGVRSIPTIMIFVNGEKKDTIIGAVSK 170

Query: 174 STLSASIDKYL 185
            TL+ SI+K+L
Sbjct: 171 DTLATSINKFL 179

[Close]

BLAST of CmaCh04G024160 vs. TAIR10
Match: AT3G15360.1 (AT3G15360.1 thioredoxin M-type 4)

HSP 1 Score: 141.7 bits (356), Expect = 4.4e-34
Identity = 69/162 (42.59%), Postives = 102/162 (62.96%), Query Frame = 1


Query: 38  SLQRLNKFPTSIARFKSFSPSTSVST----FGKSRS--------VTCKAR---GAVDDVK 97
           S+ R    P     F+    S S+ T     G +R         + C+A+    A  +V 
Sbjct: 30  SVSRRRISPARFLEFRGLKSSRSLVTQSASLGANRRTRIARGGRIACEAQDTTAAAVEVP 89

Query: 98  EVTESSWNELVVESEKTVLVEFWAPWCGPCKMIEPVIRELAQDYAGKIVCLKLNTDASPN 157
            +++S W   V+ES+  VLVEFWAPWCGPC+MI P++ +LA+D+AGK    K+NTD SPN
Sbjct: 90  NLSDSEWQTKVLESDVPVLVEFWAPWCGPCRMIHPIVDQLAKDFAGKFKFYKINTDESPN 149

Query: 158 VASKYGIRSIPTVLFFKNGQKREGVIGAVPKSTLSASIDKYL 185
            A++YGIRS+PTV+ FK G+K++ +IGAVP+ TL  +I+++L
Sbjct: 150 TANRYGIRSVPTVIIFKGGEKKDSIIGAVPRETLEKTIERFL 191

[Close]

BLAST of CmaCh04G024160 vs. TAIR10
Match: AT2G15570.2 (AT2G15570.2 Thioredoxin superfamily protein)

HSP 1 Score: 116.7 bits (291), Expect = 1.5e-26
Identity = 50/102 (49.02%), Postives = 72/102 (70.59%), Query Frame = 1


Query: 83  EVTESSWNELVVESEKTVLVEFWAPWCGPCKMIEPVIRELAQDYAGKIVCLKLNTDASPN 142
           EVT+ SW + V++SE  VLVEF+  WCGPC+M+  +I E+A DYAGK+ C  LN D    
Sbjct: 71  EVTQRSWEDSVLKSETPVLVEFYTSWCGPCRMVHRIIDEIAGDYAGKLNCYLLNADNDLP 130

Query: 143 VASKYGIRSIPTVLFFKNGQKREGVIGAVPKSTLSASIDKYL 185
           VA +Y I+++P VL FKNG+KRE ++G +PK    ++I++ L
Sbjct: 131 VAEEYEIKAVPVVLLFKNGEKRESIMGTMPKEFYISAIERVL 172

[Close]

BLAST of CmaCh04G024160 vs. TAIR10
Match: AT1G43560.1 (AT1G43560.1 thioredoxin Y2)

HSP 1 Score: 92.0 bits (227), Expect = 4.0e-19
Identity = 58/178 (32.58%), Postives = 101/178 (56.74%), Query Frame = 1


Query: 9   LSTAAAMYGTTSIPKSHPFSSTFHQKTTLSLQRLNKFPTSIARFKSFSPSTSVSTFGKSR 68
           +S A A       P+S   S++     TLS  RL   P+ I RF S    +S + F    
Sbjct: 3   ISLATAYISPCFTPES---SNSASPSRTLSSVRL---PSQIRRFGSVQSPSSSTRFAP-- 62

Query: 69  SVTCKARGAVDDVKEVTESSWNELVVESEKTVLVEFWAPWCGPCKMIEPVIRELAQDYAG 128
            +T +A       K+ T +S+++L+  S+K VLV+F+A WCGPC+++ P++ E+++    
Sbjct: 63  -LTVRA------AKKQTFNSFDDLLQNSDKPVLVDFYATWCGPCQLMVPILNEVSETLKD 122

Query: 129 KIVCLKLNTDASPNVASKYGIRSIPTVLFFKNGQKREGVIGAVPKSTLSASIDKYLEV 187
            I  +K++T+  P++A+KY I ++PT + FK+G+  +   GA+P + L   I+  L+V
Sbjct: 123 IIAVVKIDTEKYPSLANKYQIEALPTFILFKDGKLWDRFEGALPANQLVERIENSLQV 165

[Close]

BLAST of CmaCh04G024160 vs. NCBI nr
Match: gi|449466020|ref|XP_004150725.1| (PREDICTED: thioredoxin M-type, chloroplastic-like [Cucumis sativus])

HSP 1 Score: 270.8 bits (691), Expect = 1.8e-69
Identity = 144/191 (75.39%), Postives = 155/191 (81.15%), Query Frame = 1


Query: 1   MALDNCIQLSTAAAMYGTTSIPKSHPFSST--FHQKT---TLSLQRLNKFPTSIARFKSF 60
           MALDNCIQLSTAA M    SIPKSH FSST  + QKT   TLSLQRLNK PT        
Sbjct: 1   MALDNCIQLSTAATMCAAASIPKSHYFSSTTNYPQKTSFSTLSLQRLNKSPTP------- 60

Query: 61  SPSTSVSTFGKSRSVTCKARGAVDDVKEVTESSWNELVVESEKTVLVEFWAPWCGPCKMI 120
                  TF K  S+TC+ARGAVDDVKEVTESSWN LVVE++K VLVEFWAPWCGPCK+I
Sbjct: 61  -------TFRKPFSLTCQARGAVDDVKEVTESSWNNLVVENQKAVLVEFWAPWCGPCKII 120

Query: 121 EPVIRELAQDYAGKIVCLKLNTDASPNVASKYGIRSIPTVLFFKNGQKREGVIGAVPKST 180
           EPVI+ELA +YAGKIVCLKLNTD SPNVASKYGIRSIPTVLFFKNG+KRE VIGAVPKST
Sbjct: 121 EPVIKELAAEYAGKIVCLKLNTDLSPNVASKYGIRSIPTVLFFKNGEKRESVIGAVPKST 177

Query: 181 LSASIDKYLEV 187
           L+ASIDKY+EV
Sbjct: 181 LTASIDKYIEV 177

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BLAST of CmaCh04G024160 vs. NCBI nr
Match: gi|694362443|ref|XP_009360706.1| (PREDICTED: thioredoxin M-type, chloroplastic-like [Pyrus x bretschneideri])

HSP 1 Score: 203.0 bits (515), Expect = 4.6e-49
Identity = 110/188 (58.51%), Postives = 133/188 (70.74%), Query Frame = 1


Query: 1   MALDNCIQLSTAAAMYGTTSIPKS--HPFSSTFHQKTTLSLQRLNKFPTSIARFKSFSPS 60
           MAL+NC+QLST      TT +  +  HPFSST       S    N    S  +F S S S
Sbjct: 1   MALENCLQLSTVC----TTRVGAAAHHPFSSTDKFVVPTS----NGLKKSALKFSSSSSS 60

Query: 61  TSVSTFGKSRSVTCKARGAVDDVKEVTESSWNELVVESEKTVLVEFWAPWCGPCKMIEPV 120
            S S   +     CKAR AV++V+ V +SSWN LV+ SE  VLVEFWAPWCGPC+MI PV
Sbjct: 61  FSRSGKSQKSRFICKAREAVNEVQVVNDSSWNTLVIASENPVLVEFWAPWCGPCRMIAPV 120

Query: 121 IRELAQDYAGKIVCLKLNTDASPNVASKYGIRSIPTVLFFKNGQKREGVIGAVPKSTLSA 180
           I ELA++YAGKI C KLNTD SPN A++YGIRSIPTVLFFKNG+K+E VIGAVPKSTLSA
Sbjct: 121 IDELAKEYAGKISCFKLNTDESPNTATQYGIRSIPTVLFFKNGEKKESVIGAVPKSTLSA 180

Query: 181 SIDKYLEV 187
           +I+KY+++
Sbjct: 181 TIEKYVDL 180

[Close]

BLAST of CmaCh04G024160 vs. NCBI nr
Match: gi|657979511|ref|XP_008381719.1| (PREDICTED: thioredoxin M-type, chloroplastic-like [Malus domestica])

HSP 1 Score: 201.4 bits (511), Expect = 1.3e-48
Identity = 108/188 (57.45%), Postives = 132/188 (70.21%), Query Frame = 1


Query: 1   MALDNCIQLSTAAAMYGTTSIPKS--HPFSSTFHQKTTLSLQRLNKFPTSIARFKSFSPS 60
           MAL+NC+QLST      TT +  +  HPFSST        +   N    S  +F S S S
Sbjct: 1   MALENCLQLSTVC----TTRVGAAAHHPFSST----DKFVVPTXNGLKKSALKFSSSSSS 60

Query: 61  TSVSTFGKSRSVTCKARGAVDDVKEVTESSWNELVVESEKTVLVEFWAPWCGPCKMIEPV 120
              S   +     CKAR AV++V+ V +SSWN LV+ SE  VLVEFWAPWCGPC+MI PV
Sbjct: 61  FPRSGKSQKSRFICKAREAVNEVQVVNDSSWNTLVIASENPVLVEFWAPWCGPCRMIAPV 120

Query: 121 IRELAQDYAGKIVCLKLNTDASPNVASKYGIRSIPTVLFFKNGQKREGVIGAVPKSTLSA 180
           I ELA++YAGKI C KLNTD SPN A++YGIRSIPTVLFFKNG+K+E VIGAVPKSTLSA
Sbjct: 121 IDELAKEYAGKISCFKLNTDESPNTATQYGIRSIPTVLFFKNGEKKESVIGAVPKSTLSA 180

Query: 181 SIDKYLEV 187
           +I+KY+++
Sbjct: 181 TIEKYVDL 180

[Close]

BLAST of CmaCh04G024160 vs. NCBI nr
Match: gi|645264481|ref|XP_008237697.1| (PREDICTED: thioredoxin M-type, chloroplastic-like [Prunus mume])

HSP 1 Score: 201.1 bits (510), Expect = 1.7e-48
Identity = 104/186 (55.91%), Postives = 134/186 (72.04%), Query Frame = 1


Query: 1   MALDNCIQLSTAAAMYGTTSIPKSHPFSSTFHQKTTLSLQRLNKFPTSIARFKSFSPSTS 60
           MAL+NC+QLST      TT +  +  +   F  +  L +   N    S+ +F S S    
Sbjct: 57  MALENCLQLSTVC----TTRVGAAQCYQP-FSSREKLIVPTCNGLKKSVLKFSSSSSFAP 116

Query: 61  VSTFGKSRSVTCKARGAVDDVKEVTESSWNELVVESEKTVLVEFWAPWCGPCKMIEPVIR 120
            +   +SR + CKAR AV++V+ V +SSWN LV+ SE  VLVEFWAPWCGPC+MI PVI 
Sbjct: 117 SNKSHRSRFI-CKAREAVNEVQVVNDSSWNNLVIASENPVLVEFWAPWCGPCRMIAPVID 176

Query: 121 ELAQDYAGKIVCLKLNTDASPNVASKYGIRSIPTVLFFKNGQKREGVIGAVPKSTLSASI 180
           ELA++YAGKI C KLNTD SPN+A++YGIRSIPTVLFFKNG+K+E VIGAVPKSTLSA+I
Sbjct: 177 ELAKEYAGKIACFKLNTDDSPNIATQYGIRSIPTVLFFKNGEKKESVIGAVPKSTLSATI 236

Query: 181 DKYLEV 187
           +KY+++
Sbjct: 237 EKYVDL 236

[Close]

BLAST of CmaCh04G024160 vs. NCBI nr
Match: gi|595798481|ref|XP_007201394.1| (hypothetical protein PRUPE_ppa012199mg [Prunus persica])

HSP 1 Score: 200.7 bits (509), Expect = 2.3e-48
Identity = 104/186 (55.91%), Postives = 134/186 (72.04%), Query Frame = 1


Query: 1   MALDNCIQLSTAAAMYGTTSIPKSHPFSSTFHQKTTLSLQRLNKFPTSIARFKSFSPSTS 60
           MAL+NC+QLST      TT +  +  +   F  +  L +   N    S+ +F S S    
Sbjct: 1   MALENCLQLSTVC----TTRVGAAQCYQP-FSSRERLIVPTCNGLKKSVLKFSSSSSFAP 60

Query: 61  VSTFGKSRSVTCKARGAVDDVKEVTESSWNELVVESEKTVLVEFWAPWCGPCKMIEPVIR 120
            +   +SR + CKAR AV++V+ V +SSWN LV+ SE  VLVEFWAPWCGPC+MI PVI 
Sbjct: 61  SNKSHRSRFI-CKAREAVNEVQVVNDSSWNNLVIASEDPVLVEFWAPWCGPCRMIAPVID 120

Query: 121 ELAQDYAGKIVCLKLNTDASPNVASKYGIRSIPTVLFFKNGQKREGVIGAVPKSTLSASI 180
           ELA++YAGKI C KLNTD SPN+A++YGIRSIPTVLFFKNG+K+E VIGAVPKSTLSA+I
Sbjct: 121 ELAKEYAGKIACFKLNTDDSPNIATQYGIRSIPTVLFFKNGEKKESVIGAVPKSTLSATI 180

Query: 181 DKYLEV 187
           +KY+++
Sbjct: 181 EKYVDL 180

The following BLAST results are available for this feature:

BLAST of CmaCh04G024160 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TRXM_SPIOL	1.4e-45	53.19	Thioredoxin M-type, chloroplastic OS=Spinacia oleracea PE=1 SV=2	[more]
TRXM_PEA	3.5e-41	51.79	Thioredoxin M-type, chloroplastic OS=Pisum sativum PE=2 SV=1	[more]
TRXM_MAIZE	1.0e-40	68.14	Thioredoxin M-type, chloroplastic OS=Zea mays GN=TRM1 PE=2 SV=1	[more]
TRXM5_ORYSJ	5.6e-39	63.72	Thioredoxin M5, chloroplastic OS=Oryza sativa subsp. japonica GN=TRXM PE=2 SV=1	[more]
TRXM_WHEAT	5.6e-39	63.72	Thioredoxin M-type, chloroplastic OS=Triticum aestivum PE=2 SV=1	[more]

BLAST of CmaCh04G024160 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KIC1_CUCSA	1.3e-69	75.39	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G343710 PE=4 SV=1	[more]
M5W035_PRUPE	1.6e-48	55.91	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012199mg PE=4 SV=1	[more]
W9RYW2_9ROSA	2.1e-48	56.99	Thioredoxin M-type OS=Morus notabilis GN=L484_005391 PE=4 SV=1	[more]
A0A151TS81_CAJCA	3.5e-48	56.91	Uncharacterized protein OS=Cajanus cajan GN=KK1_009116 PE=4 SV=1	[more]
I3SJS4_LOTJA	4.6e-48	55.56	Uncharacterized protein OS=Lotus japonicus PE=2 SV=1	[more]

BLAST of CmaCh04G024160 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G03520.1	5.6e-37	52.99	Thioredoxin superfamily protein	[more]
AT1G03680.1	2.0e-34	48.85	thioredoxin M-type 1	[more]
AT3G15360.1	4.4e-34	42.59	thioredoxin M-type 4	[more]
AT2G15570.2	1.5e-26	49.02	Thioredoxin superfamily protein	[more]
AT1G43560.1	4.0e-19	32.58	thioredoxin Y2	[more]

BLAST of CmaCh04G024160 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449466020\|ref\|XP_004150725.1\|	1.8e-69	75.39	PREDICTED: thioredoxin M-type, chloroplastic-like [Cucumis sativus]	[more]
gi\|694362443\|ref\|XP_009360706.1\|	4.6e-49	58.51	PREDICTED: thioredoxin M-type, chloroplastic-like [Pyrus x bretschneideri]	[more]
gi\|657979511\|ref\|XP_008381719.1\|	1.3e-48	57.45	PREDICTED: thioredoxin M-type, chloroplastic-like [Malus domestica]	[more]
gi\|645264481\|ref\|XP_008237697.1\|	1.7e-48	55.91	PREDICTED: thioredoxin M-type, chloroplastic-like [Prunus mume]	[more]
gi\|595798481\|ref\|XP_007201394.1\|	2.3e-48	55.91	hypothetical protein PRUPE_ppa012199mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR005746	Thioredoxin
IPR012336	Thioredoxin-like_fold
IPR013766	Thioredoxin_domain
IPR017937	Thioredoxin_CS

Vocabulary: **Biological Process**
Term	Definition
GO:0006662	glycerol ether metabolic process
GO:0045454	cell redox homeostasis

Vocabulary: **Molecular Function**
Term	Definition
GO:0015035	protein disulfide oxidoreductase activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045454	cell redox homeostasis
biological_process	GO:0006662	glycerol ether metabolic process
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0034599	cellular response to oxidative stress
biological_process	GO:0042744	hydrogen peroxide catabolic process
biological_process	GO:0009657	plastid organization
cellular_component	GO:0005623	cell
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0015035	protein disulfide oxidoreductase activity
molecular_function	GO:0016671	oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor
molecular_function	GO:0047134	protein-disulfide reductase activity
molecular_function	GO:0004791	thioredoxin-disulfide reductase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G024160.1	CmaCh04G024160.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005746	Thioredoxin	PANTHER	PTHR10438	THIOREDOXIN	coord: 2..185 score: 2.7
IPR005746	Thioredoxin	TIGRFAMs	TIGR01068	TIGR01068	coord: 85..182 score: 8.3
IPR012336	Thioredoxin-like fold	GENE3D	G3DSA:3.40.30.10		coord: 75..185 score: 1.2
IPR012336	Thioredoxin-like fold	unknown	SSF52833	Thioredoxin-like	coord: 72..185 score: 2.31
IPR013766	Thioredoxin domain	PFAM	PF00085	Thioredoxin	coord: 81..182 score: 5.3
IPR013766	Thioredoxin domain	PROFILE	PS51352	THIOREDOXIN_2	coord: 46..185 score: 14
IPR017937	Thioredoxin, conserved site	PROSITE	PS00194	THIOREDOXIN_1	coord: 101..119 scor
None	No IPR available	PRINTS	PR00421	THIOREDOXIN	coord: 100..108 score: 1.7E-9coord: 108..117 score: 1.7E-9coord: 148..159 score: 1.
None	No IPR available	PANTHER	PTHR10438:SF290	SUBFAMILY NOT NAMED	coord: 2..185 score: 2.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh04G024160	Cucsa.077150	Cucumber (Gy14) v1	cgycmaB0131
CmaCh04G024160	Cla013870	Watermelon (97103) v1	cmawmB666
CmaCh04G024160	Csa6G343710	Cucumber (Chinese Long) v2	cmacuB771
CmaCh04G024160	MELO3C008421	Melon (DHL92) v3.5.1	cmameB680
CmaCh04G024160	ClCG08G006360	Watermelon (Charleston Gray)	cmawcgB678
CmaCh04G024160	CSPI06G18180	Wild cucumber (PI 183967)	cmacpiB781
CmaCh04G024160	CmoCh04G025340	Cucurbita moschata (Rifu)	cmacmoB729
CmaCh04G024160	CmoCh15G006400	Cucurbita moschata (Rifu)	cmacmoB693
CmaCh04G024160	Lsi08G005140	Bottle gourd (USVL1VR-Ls)	cmalsiB703
CmaCh04G024160	Cp4.1LG01g20890	Cucurbita pepo (Zucchini)	cmacpeB721
CmaCh04G024160	MELO3C008421.2	Melon (DHL92) v3.6.1	cmamedB763
CmaCh04G024160	CsaV3_6G031060	Cucumber (Chinese Long) v3	cmacucB0910
CmaCh04G024160	Cla97C08G149150	Watermelon (97103) v2	cmawmbB786
CmaCh04G024160	Bhi04G001429	Wax gourd	cmawgoB0869
CmaCh04G024160	CsGy6G017640	Cucumber (Gy14) v2	cgybcmaB839
CmaCh04G024160	Carg01574	Silver-seed gourd	carcmaB1150
CmaCh04G024160	Carg15765	Silver-seed gourd	carcmaB0088

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh04G024160	CmaCh15G006320	Cucurbita maxima (Rimu)	cmacmaB325

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh04G024160	Cucurbita moschata (Rifu)	cmacmoB675
CmaCh04G024160	Cucurbita pepo (Zucchini)	cmacpeB705
CmaCh04G024160	Cucurbita pepo (Zucchini)	cmacpeB754