CsGy6G017640 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy6G017640
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	thioredoxin-like
Location	Chr6 : 18480758 .. 18481785 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTAAAAAATCTTCTCTTTTAGCCCAAAAAAGAGCTATTGATTACTTGGTCACCATTGATCGAGGAGGTACCAAATACGATTGGGTGAACTAATATCCACACATTTCTTTAACAAACAAACATCTTCCACTCCACACCTCAATATCCTCTTCTTCCATTTTTTATTCCAATTTCCCCCAAAAAAATTCACCAAAATACCATTAACAAATTAAAAAAAAAAATTCCCCCAAACATCTTAATTTCCTCCATACAATTACATAATAAAAAAACAAAGACATCCCCCTGTTTATGCCCTAGTTTTATCCATCCCCAAAATGGCACTCGACAACTGTATACAACTGAGCACCGCCGCCACCATGTGCGCCGCCGCTTCCATACCCAAATCTCACTATTTCTCTTCAACCACAAATTACCCTCAAAAAACATCCTTCTCCACCCTCTCCCTTCAACGCCTTAACAAATCTCCCACGCCCACTTTCAGAAAACCCTTCTCCCTCACGTGCCAAGCCCGTGGAGCCGTCGACGACGGTAAGTCTTTCCATCCATTCATTTATGACTTGTTCTTACTTTCTTTGGGTTTATGGGGTTTGTGGGGTTTGTGGGGTTTGATGGGATTTTGTTGTTTGTTAGTTCAGTGAAAGAAGTAACAGAATCGAGTTGGAATAATTTGGTGGTGGAGAATCAAAAGGCTGTTTTGGTTGAATTTTGGGCACCATGGTGTGGACCTTGTAAGATAATTGAGCCAGTGATTAAGGAATTGGCAGCAGAATATGCTGGGAAGATTGTGTGTTTGAAGCTTAATACGGATCTCAGTCCAAATGTGGCTTCTAAATATGGGATTAGAAGTATTCCTACGGTTCTGTTTTTTAAGAATGGAGAGAAGAGAGAAAGTGTTATTGGGGCTGTGCCTAAATCTACTTTGACTGCCTCCATTGATAAGTATATTGAGGTTTGATTTTCAAGAATCCCCTCTTATCCAATTTCACCATATACCCTTTCTTCCAATCTCCTTCTTCTTCTTCTTCTTCT

mRNA sequence

GTAAAAAATCTTCTCTTTTAGCCCAAAAAAGAGCTATTGATTACTTGGTCACCATTGATCGAGGAGGTACCAAATACGATTGGGTGAACTAATATCCACACATTTCTTTAACAAACAAACATCTTCCACTCCACACCTCAATATCCTCTTCTTCCATTTTTTATTCCAATTTCCCCCAAAAAAATTCACCAAAATACCATTAACAAATTAAAAAAAAAAATTCCCCCAAACATCTTAATTTCCTCCATACAATTACATAATAAAAAAACAAAGACATCCCCCTGTTTATGCCCTAGTTTTATCCATCCCCAAAATGGCACTCGACAACTGTATACAACTGAGCACCGCCGCCACCATGTGCGCCGCCGCTTCCATACCCAAATCTCACTATTTCTCTTCAACCACAAATTACCCTCAAAAAACATCCTTCTCCACCCTCTCCCTTCAACGCCTTAACAAATCTCCCACGCCCACTTTCAGAAAACCCTTCTCCCTCACGTGCCAAGCCCGTGGAGCCGTCGACGACGTGAAAGAAGTAACAGAATCGAGTTGGAATAATTTGGTGGTGGAGAATCAAAAGGCTGTTTTGGTTGAATTTTGGGCACCATGGTGTGGACCTTGTAAGATAATTGAGCCAGTGATTAAGGAATTGGCAGCAGAATATGCTGGGAAGATTGTGTGTTTGAAGCTTAATACGGATCTCAGTCCAAATGTGGCTTCTAAATATGGGATTAGAAGTATTCCTACGGTTCTGTTTTTTAAGAATGGAGAGAAGAGAGAAAGTGTTATTGGGGCTGTGCCTAAATCTACTTTGACTGCCTCCATTGATAAGTATATTGAGGTTTGATTTTCAAGAATCCCCTCTTATCCAATTTCACCATATACCCTTTCTTCCAATCTCCTTCTTCTTCTTCTTCTTCT

Coding sequence (CDS)

ATGGCACTCGACAACTGTATACAACTGAGCACCGCCGCCACCATGTGCGCCGCCGCTTCCATACCCAAATCTCACTATTTCTCTTCAACCACAAATTACCCTCAAAAAACATCCTTCTCCACCCTCTCCCTTCAACGCCTTAACAAATCTCCCACGCCCACTTTCAGAAAACCCTTCTCCCTCACGTGCCAAGCCCGTGGAGCCGTCGACGACGTGAAAGAAGTAACAGAATCGAGTTGGAATAATTTGGTGGTGGAGAATCAAAAGGCTGTTTTGGTTGAATTTTGGGCACCATGGTGTGGACCTTGTAAGATAATTGAGCCAGTGATTAAGGAATTGGCAGCAGAATATGCTGGGAAGATTGTGTGTTTGAAGCTTAATACGGATCTCAGTCCAAATGTGGCTTCTAAATATGGGATTAGAAGTATTCCTACGGTTCTGTTTTTTAAGAATGGAGAGAAGAGAGAAAGTGTTATTGGGGCTGTGCCTAAATCTACTTTGACTGCCTCCATTGATAAGTATATTGAGGTTTGA

Protein sequence

MALDNCIQLSTAATMCAAASIPKSHYFSSTTNYPQKTSFSTLSLQRLNKSPTPTFRKPFSLTCQARGAVDDVKEVTESSWNNLVVENQKAVLVEFWAPWCGPCKIIEPVIKELAAEYAGKIVCLKLNTDLSPNVASKYGIRSIPTVLFFKNGEKRESVIGAVPKSTLTASIDKYIEV

Homology

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BLAST of CsGy6G017640 vs. NCBI nr
Match: XP_004150725.1 (PREDICTED: thioredoxin M-type, chloroplastic-like [Cucumis sativus] >KGN47491.1 hypothetical protein Csa_6G343710 [Cucumis sativus])

HSP 1 Score: 354.8 bits (909), Expect = 1.8e-94
Identity = 177/177 (100.00%), Postives = 177/177 (100.00%), Query Frame = 0


Query: 1   MALDNCIQLSTAATMCAAASIPKSHYFSSTTNYPQKTSFSTLSLQRLNKSPTPTFRKPFS 60
           MALDNCIQLSTAATMCAAASIPKSHYFSSTTNYPQKTSFSTLSLQRLNKSPTPTFRKPFS
Sbjct: 1   MALDNCIQLSTAATMCAAASIPKSHYFSSTTNYPQKTSFSTLSLQRLNKSPTPTFRKPFS 60

Query: 61  LTCQARGAVDDVKEVTESSWNNLVVENQKAVLVEFWAPWCGPCKIIEPVIKELAAEYAGK 120
           LTCQARGAVDDVKEVTESSWNNLVVENQKAVLVEFWAPWCGPCKIIEPVIKELAAEYAGK
Sbjct: 61  LTCQARGAVDDVKEVTESSWNNLVVENQKAVLVEFWAPWCGPCKIIEPVIKELAAEYAGK 120

Query: 121 IVCLKLNTDLSPNVASKYGIRSIPTVLFFKNGEKRESVIGAVPKSTLTASIDKYIEV 178
           IVCLKLNTDLSPNVASKYGIRSIPTVLFFKNGEKRESVIGAVPKSTLTASIDKYIEV
Sbjct: 121 IVCLKLNTDLSPNVASKYGIRSIPTVLFFKNGEKRESVIGAVPKSTLTASIDKYIEV 177

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BLAST of CsGy6G017640 vs. NCBI nr
Match: XP_016899386.1 (PREDICTED: thioredoxin-like [Cucumis melo])

HSP 1 Score: 340.1 bits (871), Expect = 4.5e-90
Identity = 169/177 (95.48%), Postives = 172/177 (97.18%), Query Frame = 0


Query: 1   MALDNCIQLSTAATMCAAASIPKSHYFSSTTNYPQKTSFSTLSLQRLNKSPTPTFRKPFS 60
           MALDNCIQLSTAATMCAAASIPKSHYFSST N+PQK SFSTLSLQRLNK PTPTFRKPFS
Sbjct: 1   MALDNCIQLSTAATMCAAASIPKSHYFSSTANFPQKLSFSTLSLQRLNKFPTPTFRKPFS 60

Query: 61  LTCQARGAVDDVKEVTESSWNNLVVENQKAVLVEFWAPWCGPCKIIEPVIKELAAEYAGK 120
           +TCQARGAVDDVKEVTESSWNNLVVENQKAVLVEFWAPWCGPCKIIEPVIKELAAEYAGK
Sbjct: 61  VTCQARGAVDDVKEVTESSWNNLVVENQKAVLVEFWAPWCGPCKIIEPVIKELAAEYAGK 120

Query: 121 IVCLKLNTDLSPNVASKYGIRSIPTVLFFKNGEKRESVIGAVPKSTLTASIDKYIEV 178
           I CLKLNTD+SPNVASKYGIRSIPTVLFFKNGEKRESVIGAVPKSTL ASIDKYIEV
Sbjct: 121 IECLKLNTDVSPNVASKYGIRSIPTVLFFKNGEKRESVIGAVPKSTLAASIDKYIEV 177

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BLAST of CsGy6G017640 vs. NCBI nr
Match: XP_022989806.1 (uncharacterized protein LOC111486882 [Cucurbita maxima])

HSP 1 Score: 269.6 bits (688), Expect = 7.4e-69
Identity = 144/191 (75.39%), Postives = 155/191 (81.15%), Query Frame = 0


Query: 1   MALDNCIQLSTAATMCAAASIPKSHYFSSTTNYPQKTSFSTLSLQRLNKSPT-------- 60
           MALDNCIQLSTAA M    SIPKSH FSST  + QKT   TLSLQRLNK PT        
Sbjct: 1   MALDNCIQLSTAAAMYGTTSIPKSHPFSST--FHQKT---TLSLQRLNKFPTSIARFKSF 60

Query: 61  ------PTFRKPFSLTCQARGAVDDVKEVTESSWNNLVVENQKAVLVEFWAPWCGPCKII 120
                  TF K  S+TC+ARGAVDDVKEVTESSWN LVVE++K VLVEFWAPWCGPCK+I
Sbjct: 61  SPSTSVSTFGKSRSVTCKARGAVDDVKEVTESSWNELVVESEKTVLVEFWAPWCGPCKMI 120

Query: 121 EPVIKELAAEYAGKIVCLKLNTDLSPNVASKYGIRSIPTVLFFKNGEKRESVIGAVPKST 178
           EPVI+ELA +YAGKIVCLKLNTD SPNVASKYGIRSIPTVLFFKNG+KRE VIGAVPKST
Sbjct: 121 EPVIRELAQDYAGKIVCLKLNTDASPNVASKYGIRSIPTVLFFKNGQKREGVIGAVPKST 180

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BLAST of CsGy6G017640 vs. NCBI nr
Match: XP_022955939.1 (uncharacterized protein LOC111457772 [Cucurbita moschata])

HSP 1 Score: 267.3 bits (682), Expect = 3.7e-68
Identity = 143/191 (74.87%), Postives = 154/191 (80.63%), Query Frame = 0


Query: 1   MALDNCIQLSTAATMCAAASIPKSHYFSSTTNYPQKTSFSTLSLQRLNKSPT-------- 60
           MALDNCIQLSTAA M    SIPKSH FSST  + QK    TLSLQRLNK PT        
Sbjct: 1   MALDNCIQLSTAAAMYGTTSIPKSHPFSST--FHQK---PTLSLQRLNKFPTSTARFKSF 60

Query: 61  ------PTFRKPFSLTCQARGAVDDVKEVTESSWNNLVVENQKAVLVEFWAPWCGPCKII 120
                  TF K  S+TC+ARGAVDDVKEVTESSWN LVVE++K VLVEFWAPWCGPCK+I
Sbjct: 61  SPSTSVSTFGKSRSVTCKARGAVDDVKEVTESSWNELVVESEKTVLVEFWAPWCGPCKMI 120

Query: 121 EPVIKELAAEYAGKIVCLKLNTDLSPNVASKYGIRSIPTVLFFKNGEKRESVIGAVPKST 178
           EPVI+ELA +YAGKIVCLKLNTD SPNVASKYGIRSIPTVLFFKNG+KRE VIGAVPKST
Sbjct: 121 EPVIRELAQDYAGKIVCLKLNTDASPNVASKYGIRSIPTVLFFKNGQKREGVIGAVPKST 180

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BLAST of CsGy6G017640 vs. NCBI nr
Match: XP_023524932.1 (uncharacterized protein LOC111788711 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 265.8 bits (678), Expect = 1.1e-67
Identity = 142/191 (74.35%), Postives = 153/191 (80.10%), Query Frame = 0


Query: 1   MALDNCIQLSTAATMCAAASIPKSHYFSSTTNYPQKTSFSTLSLQRLNKSPT-------- 60
           MALDNCIQLSTAA M    SIPKSH FSST  + QK    TLSLQR NK PT        
Sbjct: 1   MALDNCIQLSTAAAMYGTTSIPKSHPFSST--FHQK---PTLSLQRFNKFPTSTARFKSF 60

Query: 61  ------PTFRKPFSLTCQARGAVDDVKEVTESSWNNLVVENQKAVLVEFWAPWCGPCKII 120
                  TF K  S+TC+ARGAVDDVKEVTESSWN LVVE++K VLVEFWAPWCGPCK+I
Sbjct: 61  SPSTSVSTFGKSRSVTCKARGAVDDVKEVTESSWNELVVESEKTVLVEFWAPWCGPCKMI 120

Query: 121 EPVIKELAAEYAGKIVCLKLNTDLSPNVASKYGIRSIPTVLFFKNGEKRESVIGAVPKST 178
           EPVI+ELA +YAGKIVCLKLNTD SPNVASKYGIRSIPTVLFFKNG+KRE VIGAVPKST
Sbjct: 121 EPVIRELAQDYAGKIVCLKLNTDASPNVASKYGIRSIPTVLFFKNGQKREGVIGAVPKST 180

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BLAST of CsGy6G017640 vs. TAIR10
Match: AT4G03520.1 (Thioredoxin superfamily protein)

HSP 1 Score: 147.5 bits (371), Expect = 7.7e-36
Identity = 64/140 (45.71%), Postives = 101/140 (72.14%), Query Frame = 0


Query: 36  KTSFSTLSLQRLNKSPTPTFRKPFSLTCQARGAVDDVKEVTESSWNNLVVENQKAVLVEF 95
           + S S  SL  +++      R+  ++ C+A+    D++ V +S+W++LV++    V+V+F
Sbjct: 48  RLSLSPASLTSIHQPRVSRLRR--AVVCEAQETTTDIQVVNDSTWDSLVLKATGPVVVDF 107

Query: 96  WAPWCGPCKIIEPVIKELAAEYAGKIVCLKLNTDLSPNVASKYGIRSIPTVLFFKNGEKR 155
           WAPWCGPCK+I+P++ +LA  Y GKI   KLNTD SPN   +YG+RSIPT++ F  GEK+
Sbjct: 108 WAPWCGPCKMIDPLVNDLAQHYTGKIKFYKLNTDESPNTPGQYGVRSIPTIMIFVGGEKK 167

Query: 156 ESVIGAVPKSTLTASIDKYI 176
           +++IGAVPK+TLT+S+DK++
Sbjct: 168 DTIIGAVPKTTLTSSLDKFL 185

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BLAST of CsGy6G017640 vs. TAIR10
Match: AT3G15360.1 (thioredoxin M-type 4)

HSP 1 Score: 139.4 bits (350), Expect = 2.1e-33
Identity = 58/118 (49.15%), Postives = 88/118 (74.58%), Query Frame = 0


Query: 61  LTCQAR---GAVDDVKEVTESSWNNLVVENQKAVLVEFWAPWCGPCKIIEPVIKELAAEY 120
           + C+A+    A  +V  +++S W   V+E+   VLVEFWAPWCGPC++I P++ +LA ++
Sbjct: 74  IACEAQDTTAAAVEVPNLSDSEWQTKVLESDVPVLVEFWAPWCGPCRMIHPIVDQLAKDF 133

Query: 121 AGKIVCLKLNTDLSPNVASKYGIRSIPTVLFFKNGEKRESVIGAVPKSTLTASIDKYI 176
           AGK    K+NTD SPN A++YGIRS+PTV+ FK GEK++S+IGAVP+ TL  +I++++
Sbjct: 134 AGKFKFYKINTDESPNTANRYGIRSVPTVIIFKGGEKKDSIIGAVPRETLEKTIERFL 191

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BLAST of CsGy6G017640 vs. TAIR10
Match: AT1G03680.1 (thioredoxin M-type 1)

HSP 1 Score: 137.5 bits (345), Expect = 8.0e-33
Identity = 63/143 (44.06%), Postives = 98/143 (68.53%), Query Frame = 0


Query: 34  PQKTSFST-LSLQRLNKSPTPTFRKPFSLTCQARGAVDDVKEVTESSWNNLVVENQKAVL 93
           P+ +   T +SL  L+K+ +   R    + C+A+     +  V +S+W++LV++  + V 
Sbjct: 38  PESSGLRTRVSLSSLSKN-SRVSRLRRGVICEAQDTATGIPVVNDSTWDSLVLKADEPVF 97

Query: 94  VEFWAPWCGPCKIIEPVIKELAAEYAGKIVCLKLNTDLSPNVASKYGIRSIPTVLFFKNG 153
           V+FWAPWCGPCK+I+P++ ELA +YAG+    KLNTD SP    +YG+RSIPT++ F NG
Sbjct: 98  VDFWAPWCGPCKMIDPIVNELAQKYAGQFKFYKLNTDESPATPGQYGVRSIPTIMIFVNG 157

Query: 154 EKRESVIGAVPKSTLTASIDKYI 176
           EK++++IGAV K TL  SI+K++
Sbjct: 158 EKKDTIIGAVSKDTLATSINKFL 179

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BLAST of CsGy6G017640 vs. TAIR10
Match: AT2G15570.2 (Thioredoxin superfamily protein)

HSP 1 Score: 112.1 bits (279), Expect = 3.6e-25
Identity = 61/157 (38.85%), Postives = 94/157 (59.87%), Query Frame = 0


Query: 24  SHYFSSTTNYPQKTSFSTLSLQ---RLNKSPTPTFRKPFSLTC--QARGAVDDVKEVTES 83
           + + SS +     TSFS  SL+   R +   +   R   S  C   +R A     EVT+ 
Sbjct: 20  ARHISSPSRLFPVTSFSPRSLRFSDRRSLLSSSASRLRLSPLCVRDSRAAA----EVTQR 79

Query: 84  SWNNLVVENQKAVLVEFWAPWCGPCKIIEPVIKELAAEYAGKIVCLKLNTDLSPNVASKY 143
           SW + V++++  VLVEF+  WCGPC+++  +I E+A +YAGK+ C  LN D    VA +Y
Sbjct: 80  SWEDSVLKSETPVLVEFYTSWCGPCRMVHRIIDEIAGDYAGKLNCYLLNADNDLPVAEEY 139

Query: 144 GIRSIPTVLFFKNGEKRESVIGAVPKSTLTASIDKYI 176
            I+++P VL FKNGEKRES++G +PK    ++I++ +
Sbjct: 140 EIKAVPVVLLFKNGEKRESIMGTMPKEFYISAIERVL 172

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BLAST of CsGy6G017640 vs. TAIR10
Match: AT1G76760.1 (thioredoxin Y1)

HSP 1 Score: 85.9 bits (211), Expect = 2.8e-17
Identity = 37/107 (34.58%), Postives = 68/107 (63.55%), Query Frame = 0


Query: 71  DVKEVTESSWNNLVVENQKAVLVEFWAPWCGPCKIIEPVIKELAAEYAGKIVCLKLNTDL 130
           + K+ T  S+ +L+V + K VLV+++A WCGPC+ + P++ E++     KI  +K++T+ 
Sbjct: 64  EAKKQTFDSFEDLLVNSDKPVLVDYYATWCGPCQFMVPILNEVSETLKDKIQVVKIDTEK 123

Query: 131 SPNVASKYGIRSIPTVLFFKNGEKRESVIGAVPKSTLTASIDKYIEV 178
            P++A+KY I ++PT + FK+GE  +   GA+    L   I+  ++V
Sbjct: 124 YPSIANKYKIEALPTFILFKDGEPCDRFEGALTAKQLIQRIEDSLKV 170

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BLAST of CsGy6G017640 vs. Swiss-Prot
Match: sp|P07591|TRXM_SPIOL (Thioredoxin M-type, chloroplastic OS=Spinacia oleracea OX=3562 PE=1 SV=2)

HSP 1 Score: 183.3 bits (464), Expect = 2.3e-45
Identity = 98/181 (54.14%), Postives = 128/181 (70.72%), Query Frame = 0


Query: 1   MALDNCIQLSTAATMCAAASIPKSHYF--SSTTNYPQ----KTSFSTLSLQRLNKSPTPT 60
           MA++NC+QLST+A++   A     H+   SS  N P     K SF  LS    + SP   
Sbjct: 1   MAIENCLQLSTSASVGTVAVKSHVHHLQPSSKVNVPTFRGLKRSFPALSSSVSSSSPR-Q 60

Query: 61  FRKPFSLTCQARGAVDDVKEVTESSWNNLVVENQKAVLVEFWAPWCGPCKIIEPVIKELA 120
           FR   S+ C+A  AV +V++V +SSW   V+E++  V+V+FWAPWCGPCK+I PVI ELA
Sbjct: 61  FRYS-SVVCKASEAVKEVQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELA 120

Query: 121 AEYAGKIVCLKLNTDLSPNVASKYGIRSIPTVLFFKNGEKRESVIGAVPKSTLTASIDKY 176
            EY+GKI   KLNTD +P +A++Y IRSIPTVLFFKNGE++ES+IGAVPKSTLT SI+KY
Sbjct: 121 KEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVLFFKNGERKESIIGAVPKSTLTDSIEKY 179

[Close]

BLAST of CsGy6G017640 vs. Swiss-Prot
Match: sp|Q41864|TRXM_MAIZE (Thioredoxin M-type, chloroplastic OS=Zea mays OX=4577 GN=TRM1 PE=2 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 7.6e-41
Identity = 92/175 (52.57%), Postives = 114/175 (65.14%), Query Frame = 0


Query: 1   MALDNCIQLSTAATMCAAASIPKSHYFSSTTNYPQKTSFSTLSLQRLNKSPTPTFRKPFS 60
           MA++ C +    A    A +  K          P K + + LS+ R+        R+P  
Sbjct: 1   MAMETCFR----AWALHAPAGSKDRLLVGNLVLPSKRALAPLSVGRV------ATRRPRH 60

Query: 61  LTCQARGAVDDVKEVTESSWNNLVVENQKAVLVEFWAPWCGPCKIIEPVIKELAAEYAGK 120
           + CQ++ AVD+V    E +W+ LV+  +  VLVEFWAPWCGPC++I PVI ELA +YAGK
Sbjct: 61  V-CQSKNAVDEVVVADEKNWDGLVMACETPVLVEFWAPWCGPCRMIAPVIDELAKDYAGK 120

Query: 121 IVCLKLNTDLSPNVASKYGIRSIPTVLFFKNGEKRESVIGAVPKSTLTASIDKYI 176
           I C K+NTD SPNVAS YGIRSIPTVL FK GEK+ESVIGAVPKSTLT  IDKYI
Sbjct: 121 ITCCKVNTDDSPNVASTYGIRSIPTVLIFKGGEKKESVIGAVPKSTLTTLIDKYI 164

[Close]

BLAST of CsGy6G017640 vs. Swiss-Prot
Match: sp|P48384|TRXM_PEA (Thioredoxin M-type, chloroplastic OS=Pisum sativum OX=3888 PE=2 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 7.6e-41
Identity = 75/111 (67.57%), Postives = 95/111 (85.59%), Query Frame = 0


Query: 65  ARGAVDDVKEVTESSWNNLVVENQKAVLVEFWAPWCGPCKIIEPVIKELAAEYAGKIVCL 124
           AR AV++V+ V +SSW+ LV+ ++  VLV+FWAPWCGPC++I P+I ELA EYAGKI C 
Sbjct: 62  AREAVNEVQVVNDSSWDELVIGSETPVLVDFWAPWCGPCRMIAPIIDELAKEYAGKIKCY 121

Query: 125 KLNTDLSPNVASKYGIRSIPTVLFFKNGEKRESVIGAVPKSTLTASIDKYI 176
           KLNTD SPN A+KYGIRSIPTVLFFKNGE+++SVIGAVPK+TL+  ++KYI
Sbjct: 122 KLNTDESPNTATKYGIRSIPTVLFFKNGERKDSVIGAVPKATLSEKVEKYI 172

[Close]

BLAST of CsGy6G017640 vs. Swiss-Prot
Match: sp|Q9ZP20|TRXM5_ORYSJ (Thioredoxin M5, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=TRXM PE=2 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 3.8e-40
Identity = 78/136 (57.35%), Postives = 97/136 (71.32%), Query Frame = 0


Query: 40  STLSLQRLNKSPTPTFRKPFSLTCQARGAVDDVKEVTESSWNNLVVENQKAVLVEFWAPW 99
           S+ S  RL+ +     R      CQ    VD+V    E +W+++V+ ++  VLVEFWAPW
Sbjct: 35  SSQSKPRLSVASPSPLRPASRFACQCSNVVDEVVVADEKNWDSMVLGSEAPVLVEFWAPW 94

Query: 100 CGPCKIIEPVIKELAAEYAGKIVCLKLNTDLSPNVASKYGIRSIPTVLFFKNGEKRESVI 159
           CGPC++I PVI ELA EY GKI C K+NTD SPN+A+ YGIRSIPTVL FKNGEK+ESVI
Sbjct: 95  CGPCRMIAPVIDELAKEYVGKIKCCKVNTDDSPNIATNYGIRSIPTVLMFKNGEKKESVI 154

Query: 160 GAVPKSTLTASIDKYI 176
           GAVPK+TL   IDKY+
Sbjct: 155 GAVPKTTLATIIDKYV 170

[Close]

BLAST of CsGy6G017640 vs. Swiss-Prot
Match: sp|Q9ZP21|TRXM_WHEAT (Thioredoxin M-type, chloroplastic OS=Triticum aestivum OX=4565 PE=2 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 6.4e-40
Identity = 76/127 (59.84%), Postives = 93/127 (73.23%), Query Frame = 0


Query: 49  KSPTPTFRKPFSLTCQARGAVDDVKEVTESSWNNLVVENQKAVLVEFWAPWCGPCKIIEP 108
           KS     R+P    C+ +  VD+V    E +W+N+V+  +  VLVEFWAPWCGPC++I P
Sbjct: 47  KSALVAARRPSRFVCKCKNVVDEVIVADEKNWDNMVIACESPVLVEFWAPWCGPCRMIAP 106

Query: 109 VIKELAAEYAGKIVCLKLNTDLSPNVASKYGIRSIPTVLFFKNGEKRESVIGAVPKSTLT 168
           VI ELA +Y GKI C K+NTD  PN+AS YGIRSIPTVL FK+GEK+ESVIGAVPK+TL 
Sbjct: 107 VIDELAKDYVGKIKCCKVNTDDCPNIASTYGIRSIPTVLMFKDGEKKESVIGAVPKTTLC 166

Query: 169 ASIDKYI 176
             IDKYI
Sbjct: 167 TIIDKYI 173

[Close]

BLAST of CsGy6G017640 vs. TrEMBL
Match: tr|A0A0A0KIC1|A0A0A0KIC1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G343710 PE=4 SV=1)

HSP 1 Score: 354.8 bits (909), Expect = 1.2e-94
Identity = 177/177 (100.00%), Postives = 177/177 (100.00%), Query Frame = 0


Query: 1   MALDNCIQLSTAATMCAAASIPKSHYFSSTTNYPQKTSFSTLSLQRLNKSPTPTFRKPFS 60
           MALDNCIQLSTAATMCAAASIPKSHYFSSTTNYPQKTSFSTLSLQRLNKSPTPTFRKPFS
Sbjct: 1   MALDNCIQLSTAATMCAAASIPKSHYFSSTTNYPQKTSFSTLSLQRLNKSPTPTFRKPFS 60

Query: 61  LTCQARGAVDDVKEVTESSWNNLVVENQKAVLVEFWAPWCGPCKIIEPVIKELAAEYAGK 120
           LTCQARGAVDDVKEVTESSWNNLVVENQKAVLVEFWAPWCGPCKIIEPVIKELAAEYAGK
Sbjct: 61  LTCQARGAVDDVKEVTESSWNNLVVENQKAVLVEFWAPWCGPCKIIEPVIKELAAEYAGK 120

Query: 121 IVCLKLNTDLSPNVASKYGIRSIPTVLFFKNGEKRESVIGAVPKSTLTASIDKYIEV 178
           IVCLKLNTDLSPNVASKYGIRSIPTVLFFKNGEKRESVIGAVPKSTLTASIDKYIEV
Sbjct: 121 IVCLKLNTDLSPNVASKYGIRSIPTVLFFKNGEKRESVIGAVPKSTLTASIDKYIEV 177

[Close]

BLAST of CsGy6G017640 vs. TrEMBL
Match: tr|A0A1S4DTR8|A0A1S4DTR8_CUCME (thioredoxin-like OS=Cucumis melo OX=3656 GN=LOC107990489 PE=4 SV=1)

HSP 1 Score: 340.1 bits (871), Expect = 3.0e-90
Identity = 169/177 (95.48%), Postives = 172/177 (97.18%), Query Frame = 0


Query: 1   MALDNCIQLSTAATMCAAASIPKSHYFSSTTNYPQKTSFSTLSLQRLNKSPTPTFRKPFS 60
           MALDNCIQLSTAATMCAAASIPKSHYFSST N+PQK SFSTLSLQRLNK PTPTFRKPFS
Sbjct: 1   MALDNCIQLSTAATMCAAASIPKSHYFSSTANFPQKLSFSTLSLQRLNKFPTPTFRKPFS 60

Query: 61  LTCQARGAVDDVKEVTESSWNNLVVENQKAVLVEFWAPWCGPCKIIEPVIKELAAEYAGK 120
           +TCQARGAVDDVKEVTESSWNNLVVENQKAVLVEFWAPWCGPCKIIEPVIKELAAEYAGK
Sbjct: 61  VTCQARGAVDDVKEVTESSWNNLVVENQKAVLVEFWAPWCGPCKIIEPVIKELAAEYAGK 120

Query: 121 IVCLKLNTDLSPNVASKYGIRSIPTVLFFKNGEKRESVIGAVPKSTLTASIDKYIEV 178
           I CLKLNTD+SPNVASKYGIRSIPTVLFFKNGEKRESVIGAVPKSTL ASIDKYIEV
Sbjct: 121 IECLKLNTDVSPNVASKYGIRSIPTVLFFKNGEKRESVIGAVPKSTLAASIDKYIEV 177

[Close]

BLAST of CsGy6G017640 vs. TrEMBL
Match: tr|A0A2P4HX44|A0A2P4HX44_QUESU (Thioredoxin m-type, chloroplastic OS=Quercus suber OX=58331 GN=CFP56_39833 PE=4 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 7.4e-49
Identity = 108/187 (57.75%), Postives = 139/187 (74.33%), Query Frame = 0


Query: 1   MALDNCIQLSTAATMCAAASIPKSHYFSS-------TTNYPQKTSFSTLSLQRLNKSPTP 60
           MAL+NC QLST  T   AA +   H FSS       T N  +K+  ++ +    + S   
Sbjct: 1   MALENCFQLSTVCTTRTAA-LQCYHPFSSKERLNFLTCNALKKSLLTSATCSSSSSSYPH 60

Query: 61  TF----RKPFSLTCQARGAVDDVKEVTESSWNNLVVENQKAVLVEFWAPWCGPCKIIEPV 120
           +     RKP S+ C+AR AVD+V+ VT+S+WNNLV+ ++  VLVEFWAPWCGPC++I PV
Sbjct: 61  SISVKPRKP-SIVCKAREAVDEVQVVTDSNWNNLVIASENPVLVEFWAPWCGPCRMIAPV 120

Query: 121 IKELAAEYAGKIVCLKLNTDLSPNVASKYGIRSIPTVLFFKNGEKRESVIGAVPKSTLTA 177
           I+ELA EYAGKI+CLKLNTD  PN+A++YGIRSIPTVLFFKNGEK+ESVIGAVPKSTL+A
Sbjct: 121 IEELAKEYAGKILCLKLNTDDCPNIATQYGIRSIPTVLFFKNGEKKESVIGAVPKSTLSA 180

[Close]

BLAST of CsGy6G017640 vs. TrEMBL
Match: tr|A0A2I4DIN7|A0A2I4DIN7_9ROSI (thioredoxin M-type, chloroplastic-like OS=Juglans regia OX=51240 GN=LOC108980524 PE=4 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 6.2e-48
Identity = 107/182 (58.79%), Postives = 132/182 (72.53%), Query Frame = 0


Query: 1   MALDNCIQLSTAATMCAAASIPKSHYFSSTTNY-----PQKTSFSTLSLQRLNKSPTPTF 60
           MAL+NC Q+ST  T  AAA      ++S    +       K S  T SL   +   +   
Sbjct: 1   MALENCFQVSTVCTTRAAALQCYHPFYSKEKLHLPICSGLKKSILTSSLSSSSYPHSLKS 60

Query: 61  R-KPFSLTCQARGAVDDVKEVTESSWNNLVVENQKAVLVEFWAPWCGPCKIIEPVIKELA 120
           R +  S+ C+AR A+D+V+ VT+SSWNNLV+ ++  VLVEFWAPWCGPCK+I PVI ELA
Sbjct: 61  RPRKSSIVCKARQALDEVQVVTDSSWNNLVIASENPVLVEFWAPWCGPCKMIAPVIDELA 120

Query: 121 AEYAGKIVCLKLNTDLSPNVASKYGIRSIPTVLFFKNGEKRESVIGAVPKSTLTASIDKY 177
            EYAGKI+C KLNTD SPN+A+KYGIRSIPTVLFFKNGEK+ESVIGAVPKSTL+ +I+KY
Sbjct: 121 KEYAGKILCCKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESVIGAVPKSTLSTTIEKY 180

[Close]

BLAST of CsGy6G017640 vs. TrEMBL
Match: tr|A0A061FPW8|A0A061FPW8_THECC (Thioredoxin M-type 4 OS=Theobroma cacao OX=3641 GN=TCM_035372 PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 1.8e-47
Identity = 104/185 (56.22%), Postives = 133/185 (71.89%), Query Frame = 0


Query: 1   MALDNCIQLSTAATMCAAASIPKSHYFSST--TNYPQKTSFSTLSLQRLNKSPTPTFRKP 60
           MAL+NC QLS+A T   A+ +   H+FSS    + P    F+  +L   + S + +    
Sbjct: 1   MALENCFQLSSACT-TRASVLQSYHHFSSVEKVHLPTFRGFNKPNLSFTSSSSSSSLAHS 60

Query: 61  FS-------LTCQARGAVDDVKEVTESSWNNLVVENQKAVLVEFWAPWCGPCKIIEPVIK 120
           F+       L C+AR AVD+V  VTESSW  LVV ++  VLVEFWAPWCGPC++IEPVI 
Sbjct: 61  FTRRSQKSRLICKAREAVDEVAVVTESSWGELVVGSETPVLVEFWAPWCGPCRMIEPVIA 120

Query: 121 ELAAEYAGKIVCLKLNTDLSPNVASKYGIRSIPTVLFFKNGEKRESVIGAVPKSTLTASI 177
           ELA EYAGKI C KLNTD SPN+A+++GIRSIPT+LFFK+GEK+ES+IGAVPKSTL A+I
Sbjct: 121 ELAKEYAGKIACYKLNTDDSPNIATEFGIRSIPTMLFFKDGEKKESIIGAVPKSTLAATI 180

The following BLAST results are available for this feature:

BLAST of CsGy6G017640 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004150725.1	1.8e-94	100.00	PREDICTED: thioredoxin M-type, chloroplastic-like [Cucumis sativus] >KGN47491.1 ...	[more]
XP_016899386.1	4.5e-90	95.48	PREDICTED: thioredoxin-like [Cucumis melo]	[more]
XP_022989806.1	7.4e-69	75.39	uncharacterized protein LOC111486882 [Cucurbita maxima]	[more]
XP_022955939.1	3.7e-68	74.87	uncharacterized protein LOC111457772 [Cucurbita moschata]	[more]
XP_023524932.1	1.1e-67	74.35	uncharacterized protein LOC111788711 [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsGy6G017640 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G03520.1	7.7e-36	45.71	Thioredoxin superfamily protein	[more]
AT3G15360.1	2.1e-33	49.15	thioredoxin M-type 4	[more]
AT1G03680.1	8.0e-33	44.06	thioredoxin M-type 1	[more]
AT2G15570.2	3.6e-25	38.85	Thioredoxin superfamily protein	[more]
AT1G76760.1	2.8e-17	34.58	thioredoxin Y1	[more]

BLAST of CsGy6G017640 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P07591\|TRXM_SPIOL	2.3e-45	54.14	Thioredoxin M-type, chloroplastic OS=Spinacia oleracea OX=3562 PE=1 SV=2	[more]
sp\|Q41864\|TRXM_MAIZE	7.6e-41	52.57	Thioredoxin M-type, chloroplastic OS=Zea mays OX=4577 GN=TRM1 PE=2 SV=1	[more]
sp\|P48384\|TRXM_PEA	7.6e-41	67.57	Thioredoxin M-type, chloroplastic OS=Pisum sativum OX=3888 PE=2 SV=1	[more]
sp\|Q9ZP20\|TRXM5_ORYSJ	3.8e-40	57.35	Thioredoxin M5, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=TRXM P...	[more]
sp\|Q9ZP21\|TRXM_WHEAT	6.4e-40	59.84	Thioredoxin M-type, chloroplastic OS=Triticum aestivum OX=4565 PE=2 SV=1	[more]

BLAST of CsGy6G017640 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KIC1\|A0A0A0KIC1_CUCSA	1.2e-94	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G343710 PE=4 SV=1	[more]
tr\|A0A1S4DTR8\|A0A1S4DTR8_CUCME	3.0e-90	95.48	thioredoxin-like OS=Cucumis melo OX=3656 GN=LOC107990489 PE=4 SV=1	[more]
tr\|A0A2P4HX44\|A0A2P4HX44_QUESU	7.4e-49	57.75	Thioredoxin m-type, chloroplastic OS=Quercus suber OX=58331 GN=CFP56_39833 PE=4 ...	[more]
tr\|A0A2I4DIN7\|A0A2I4DIN7_9ROSI	6.2e-48	58.79	thioredoxin M-type, chloroplastic-like OS=Juglans regia OX=51240 GN=LOC108980524...	[more]
tr\|A0A061FPW8\|A0A061FPW8_THECC	1.8e-47	56.22	Thioredoxin M-type 4 OS=Theobroma cacao OX=3641 GN=TCM_035372 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0015035	protein disulfide oxidoreductase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0045454	cell redox homeostasis
GO:0006662	glycerol ether metabolic process

Vocabulary: **INTERPRO**
Term	Definition
IPR036249	Thioredoxin-like_sf
IPR017937	Thioredoxin_CS
IPR013766	Thioredoxin_domain
IPR005746	Thioredoxin

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045454	cell redox homeostasis
biological_process	GO:0034599	cellular response to oxidative stress
biological_process	GO:0006662	glycerol ether metabolic process
biological_process	GO:0042744	hydrogen peroxide catabolic process
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0009657	plastid organization
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016671	oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor
molecular_function	GO:0015035	protein disulfide oxidoreductase activity
molecular_function	GO:0047134	protein-disulfide reductase activity
molecular_function	GO:0004791	thioredoxin-disulfide reductase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy6G017640.1	CsGy6G017640.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR00421	THIOREDOXIN	coord: 91..99 score: 64.57 coord: 99..108 score: 63.28 coord: 139..150 score: 44.63
None	No IPR available	GENE3D	G3DSA:3.40.30.10		coord: 71..177 e-value: 7.5E-35 score: 121.2
None	No IPR available	PANTHER	PTHR10438:SF367	SUBFAMILY NOT NAMED	coord: 3..176
None	No IPR available	CDD	cd02947	TRX_family	coord: 84..172 e-value: 1.47297E-36 score: 123.052
IPR005746	Thioredoxin	TIGRFAM	TIGR01068	TIGR01068	coord: 76..173 e-value: 1.1E-35 score: 119.9
IPR005746	Thioredoxin	PANTHER	PTHR10438	THIOREDOXIN	coord: 3..176
IPR013766	Thioredoxin domain	PFAM	PF00085	Thioredoxin	coord: 72..173 e-value: 2.2E-32 score: 111.0
IPR013766	Thioredoxin domain	PROSITE	PS51352	THIOREDOXIN_2	coord: 50..176 score: 14.918
IPR017937	Thioredoxin, conserved site	PROSITE	PS00194	THIOREDOXIN_1	coord: 92..110
IPR036249	Thioredoxin-like superfamily	SUPERFAMILY	SSF52833	Thioredoxin-like	coord: 60..175

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy6G017640	Cla013870	Watermelon (97103) v1	cgybwmB439
CsGy6G017640	Csa6G343710	Cucumber (Chinese Long) v2	cgybcuB281
CsGy6G017640	MELO3C008421	Melon (DHL92) v3.5.1	cgybmeB410
CsGy6G017640	ClCG08G006360	Watermelon (Charleston Gray)	cgybwcgB466
CsGy6G017640	CSPI06G18180	Wild cucumber (PI 183967)	cgybcpiB287
CsGy6G017640	CmaCh15G006320	Cucurbita maxima (Rimu)	cgybcmaB743
CsGy6G017640	CmaCh04G024160	Cucurbita maxima (Rimu)	cgybcmaB839
CsGy6G017640	CmoCh15G006400	Cucurbita moschata (Rifu)	cgybcmoB724
CsGy6G017640	CmoCh04G025340	Cucurbita moschata (Rifu)	cgybcmoB819
CsGy6G017640	Lsi08G005140	Bottle gourd (USVL1VR-Ls)	cgyblsiB447
CsGy6G017640	Cp4.1LG01g20890	Cucurbita pepo (Zucchini)	cgybcpeB801
CsGy6G017640	MELO3C008421.2	Melon (DHL92) v3.6.1	cgybmedB408
CsGy6G017640	CsaV3_6G031060	Cucumber (Chinese Long) v3	cgybcucB298
CsGy6G017640	Cla97C08G149150	Watermelon (97103) v2	cgybwmbB474
CsGy6G017640	Bhi04G001429	Wax gourd	cgybwgoB545
CsGy6G017640	Carg15765	Silver-seed gourd	carcgybB0067
CsGy6G017640	Carg01574	Silver-seed gourd	carcgybB0826

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy6G017640	Cucurbita moschata (Rifu)	cgybcmoB690
CsGy6G017640	Cucurbita pepo (Zucchini)	cgybcpeB743