Cp4.1LG01g20030 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG01g20030
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Plastid movement impaired protein
Location	Cp4.1LG01 : 17047941 .. 17048732 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATAGACAGAGAAGAGAGAAGGGGGAAAATTATTGGGCAAAAACAGAAAGAAACGGAAATCGAGGGAAAATTGGGGAAATGGGGAACAGTATGGGGGGAAGACGGAGAGTAAAGGTAATGAAAGTGGACGGAGAGATTCTGAAATTGAAGACGCCGATTCGAGTTTCAGAGGTTTTGAAGGATTATCCGGATCATGTTTTGATGGAATCGGAGGCTGTTAAGCATTACGGAGTGAAGGCCAAGCCATTAGAGCCGCAACAGGATTTGAACAAGAAGAAGATTTATTTTCTTCTACAGTTACCGAAGATCTCCAATCCGGAACCGCCAGAGCGCATTCCGAGGCGAGTTCGTTCTTCTGGCGTCAATATGTCCGCCAAGGATCGTCTCGACCTTCTCATGCTTTCGCGGAGGACGATGTCGGAGGTCGCTATTACTAGACCGTCTCCGGTACTGGCTGCTGCTTCCTCTGCTGAGCCGCGGTTTCATAGCGGCCCGATGCAGGTTAAAATGAAGATTCCGAGATCGCAGGTCGCTAAATTGATGGAGGAGAGTCGGAATGAAGGAGAAATCGCGGAGAAGATTATAAATCTTTATTTGAAGAACGAGGTCAATAGCGGCGGCGGCGGCGGCGGTGGCCATGGCGATGCCGTTGCCGGTTCCGGTGGCGTCGACGCCGGCCGTCATCCGGAGCCGTGGAAACCCAGCCTCGTTAGTAGCGTTAGGGAAAATTCAAAGGTTCATCGCGAGGTATGTTCGTCGTTCAAATTTTTCGCTCTGACAGTCCATTAA

mRNA sequence

ATGGATAGACAGAGAAGAGAGAAGGGGGAAAATTATTGGGCAAAAACAGAAAGAAACGGAAATCGAGGGAAAATTGGGGAAATGGGGAACAGTATGGGGGGAAGACGGAGAGTAAAGGTAATGAAAGTGGACGGAGAGATTCTGAAATTGAAGACGCCGATTCGAGTTTCAGAGGTTTTGAAGGATTATCCGGATCATGTTTTGATGGAATCGGAGGCTGTTAAGCATTACGGAGTGAAGGCCAAGCCATTAGAGCCGCAACAGGATTTGAACAAGAAGAAGATTTATTTTCTTCTACAGTTACCGAAGATCTCCAATCCGGAACCGCCAGAGCGCATTCCGAGGCGAGTTCGTTCTTCTGGCGTCAATATGTCCGCCAAGGATCGTCTCGACCTTCTCATGCTTTCGCGGAGGACGATGTCGGAGGTCGCTATTACTAGACCGTCTCCGGTACTGGCTGCTGCTTCCTCTGCTGAGCCGCGGTTTCATAGCGGCCCGATGCAGGTTAAAATGAAGATTCCGAGATCGCAGGTCGCTAAATTGATGGAGGAGAGTCGGAATGAAGGAGAAATCGCGGAGAAGATTATAAATCTTTATTTGAAGAACGAGGTCAATAGCGGCGGCGGCGGCGGCGGTGGCCATGGCGATGCCGTTGCCGGTTCCGGTGGCGTCGACGCCGGCCGTCATCCGGAGCCGTGGAAACCCAGCCTCGTTAGTAGCGTTAGGGAAAATTCAAAGGTTCATCGCGAGGTATGTTCGTCGTTCAAATTTTTCGCTCTGACAGTCCATTAA

Coding sequence (CDS)

ATGGATAGACAGAGAAGAGAGAAGGGGGAAAATTATTGGGCAAAAACAGAAAGAAACGGAAATCGAGGGAAAATTGGGGAAATGGGGAACAGTATGGGGGGAAGACGGAGAGTAAAGGTAATGAAAGTGGACGGAGAGATTCTGAAATTGAAGACGCCGATTCGAGTTTCAGAGGTTTTGAAGGATTATCCGGATCATGTTTTGATGGAATCGGAGGCTGTTAAGCATTACGGAGTGAAGGCCAAGCCATTAGAGCCGCAACAGGATTTGAACAAGAAGAAGATTTATTTTCTTCTACAGTTACCGAAGATCTCCAATCCGGAACCGCCAGAGCGCATTCCGAGGCGAGTTCGTTCTTCTGGCGTCAATATGTCCGCCAAGGATCGTCTCGACCTTCTCATGCTTTCGCGGAGGACGATGTCGGAGGTCGCTATTACTAGACCGTCTCCGGTACTGGCTGCTGCTTCCTCTGCTGAGCCGCGGTTTCATAGCGGCCCGATGCAGGTTAAAATGAAGATTCCGAGATCGCAGGTCGCTAAATTGATGGAGGAGAGTCGGAATGAAGGAGAAATCGCGGAGAAGATTATAAATCTTTATTTGAAGAACGAGGTCAATAGCGGCGGCGGCGGCGGCGGTGGCCATGGCGATGCCGTTGCCGGTTCCGGTGGCGTCGACGCCGGCCGTCATCCGGAGCCGTGGAAACCCAGCCTCGTTAGTAGCGTTAGGGAAAATTCAAAGGTTCATCGCGAGGTATGTTCGTCGTTCAAATTTTTCGCTCTGACAGTCCATTAA

Protein sequence

MDRQRREKGENYWAKTERNGNRGKIGEMGNSMGGRRRVKVMKVDGEILKLKTPIRVSEVLKDYPDHVLMESEAVKHYGVKAKPLEPQQDLNKKKIYFLLQLPKISNPEPPERIPRRVRSSGVNMSAKDRLDLLMLSRRTMSEVAITRPSPVLAAASSAEPRFHSGPMQVKMKIPRSQVAKLMEESRNEGEIAEKIINLYLKNEVNSGGGGGGGHGDAVAGSGGVDAGRHPEPWKPSLVSSVRENSKVHREVCSSFKFFALTVH

Homology

[Close]

BLAST of Cp4.1LG01g20030 vs. Swiss-Prot
Match: Y1648_ARATH (Uncharacterized protein At1g66480 OS=Arabidopsis thaliana GN=At1g66480 PE=2 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 8.0e-39
Identity = 97/209 (46.41%), Postives = 134/209 (64.11%), Query Frame = 1


Query: 28  MGNSMG-GRRRVKVMKVDGEILKLKTPIRVSEVLKDYPDHVLMESEAVKHYGVKAKPLEP 87
           MGNS+   R+R KVMK+DGE  ++KTP+   EV  DYP +VL++S+AVKH+GV++KPLEP
Sbjct: 1   MGNSITVKRKRAKVMKIDGETFRIKTPVTAREVTADYPGYVLLDSQAVKHFGVRSKPLEP 60

Query: 88  QQDLNKKKIYFLLQLPKISNPEPPE--------RIPRRVRSSGVNMSAKDRLDLLMLSRR 147
            Q L  KK YFL++LPK+    PPE        ++P R   SG+++ AK+RLD+LMLSRR
Sbjct: 61  NQTLKPKKTYFLVELPKL----PPETTAVDTENKLPYRRVMSGIHVGAKERLDMLMLSRR 120

Query: 148 TMSEVAITRPSPVLAAASSAEPRFHSGPMQVKMKIPRSQVAKLMEESRNEGE-IAEKIIN 207
           T+S+V I R            P    G   V++++PRSQ+ KLMEE+ N+   IAEKI+ 
Sbjct: 121 TVSDVTIGRSD----GGDGFGPELGPGHTSVRLRLPRSQITKLMEENNNDASAIAEKILG 180

Query: 208 LYLKNEVNSGGGGGGGHGDAVAGSGGVDA 227
           +Y++     GGG GG  G    GSG + A
Sbjct: 181 IYMERSGELGGGRGGVDGRRELGSGEIKA 201

[Close]

BLAST of Cp4.1LG01g20030 vs. TrEMBL
Match: A0A0A0KRN5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G418770 PE=4 SV=1)

HSP 1 Score: 348.6 bits (893), Expect = 6.7e-93
Identity = 190/239 (79.50%), Postives = 206/239 (86.19%), Query Frame = 1


Query: 28  MGNSMGGRRRVKVMKVDGEILKLKTPIRVSEVLKDYPDHVLMESEAVKHYGVKAKPLEPQ 87
           MGNS+GGR+RVKVMKVDGEILKLK PIRVSEVLKDYPDHVLMESEAVKHYGVKAKPLEPQ
Sbjct: 1   MGNSIGGRKRVKVMKVDGEILKLKLPIRVSEVLKDYPDHVLMESEAVKHYGVKAKPLEPQ 60

Query: 88  QDLNKKKIYFLLQLPKIS--NPEPPERIPRRVRSSGVNMSAKDRLDLLMLSRRTMSEVAI 147
           QDLN+KKIYFLLQLPKI+  N  PP+RIPRRVRSSGV+MSAKDRLDLLMLSRRTMSE+AI
Sbjct: 61  QDLNRKKIYFLLQLPKIAADNRPPPDRIPRRVRSSGVHMSAKDRLDLLMLSRRTMSEIAI 120

Query: 148 TRPSPVLAAASSAEPRFHSGPMQVKMKIPRSQVAKLMEESRNEGEIAEKIINLYLKNEVN 207
           TRPS   A  SSA+PRFHSGPMQVKMKIPRSQVAKLMEES +EGEIAEKII +YLKNEVN
Sbjct: 121 TRPSTTSATDSSAQPRFHSGPMQVKMKIPRSQVAKLMEESASEGEIAEKIIKMYLKNEVN 180

Query: 208 SGGGGGGGHGDAVAGSGGVDAGRHPEPWKPSLVSSVRENSKVHREV---CSSFKFFALT 262
           +GGG           +G V+AG+HPE WKPSLVSSVRENSKVHREV     +F+F   T
Sbjct: 181 TGGG----------SAGDVNAGQHPEHWKPSLVSSVRENSKVHREVRFFLPNFRFIHFT 229

[Close]

BLAST of Cp4.1LG01g20030 vs. TrEMBL
Match: A0A061EH62_THECC (Plastid movement impaired 2 OS=Theobroma cacao GN=TCM_019256 PE=4 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 2.1e-54
Identity = 125/229 (54.59%), Postives = 161/229 (70.31%), Query Frame = 1


Query: 28  MGNSMGGRRRVKVMKVDGEILKLKTPIRVSEVLKDYPDHVLMESEAVKHYGVKAKPLEPQ 87
           MGNSMGGR++ KVMK+DGE  KLKTP+R  +V+KDYP HVL++SEAVKH+G++AKPLEPQ
Sbjct: 1   MGNSMGGRKKAKVMKIDGETFKLKTPVRAWDVVKDYPGHVLLDSEAVKHFGIRAKPLEPQ 60

Query: 88  QDLNKKKIYFLLQLPKISNPEPPERIPRRVRSSGVNMSAKDRLDLLMLSRRTMSEVAITR 147
           QDL  KKIYFL++LPK     P E+ PRRVRS G++MSAKDRL+ LMLSRR++S++++ R
Sbjct: 61  QDLKPKKIYFLVELPKF----PEEKAPRRVRSGGIHMSAKDRLECLMLSRRSVSDLSMVR 120

Query: 148 PSPVLAAASSAEPRFHSGPMQVKMKIPRSQVAKLMEESRNEGEIAEKIINLYLKNEVNSG 207
           PS  L +         SG M VKM++P+SQ+AKL+EESR+  E+AEKI++LY++N     
Sbjct: 121 PSSSLGSDGLGR---SSGGMTVKMRLPKSQMAKLVEESRDGVEVAEKILDLYVEN----- 180

Query: 208 GGGGGGHGDAVAGSGGVDAGRHPE-PWKPSLVSSVRENSKVHREVCSSF 256
                      AG G  D   H E PWKP L  S+ EN K  RE   SF
Sbjct: 181 -----------AGGGDTDNQMHLEAPWKPGL-GSIGENFKAKREKRVSF 205

[Close]

BLAST of Cp4.1LG01g20030 vs. TrEMBL
Match: A0A0D2QMN0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G086600 PE=4 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 1.4e-50
Identity = 125/236 (52.97%), Postives = 160/236 (67.80%), Query Frame = 1


Query: 28  MGNSMGGRRRVKVMKVDGEILKLKTPIRVSEVLKDYPD-HVLMESEAVKHYGVKAKPLEP 87
           MGNS+GGR + KVMK+DGE +KLKTPIRV +VLKDYP  HVL++S+ VKHYG++AKPLEP
Sbjct: 1   MGNSIGGRNKAKVMKIDGETIKLKTPIRVWDVLKDYPTGHVLLDSQTVKHYGIRAKPLEP 60

Query: 88  QQDLNKKKIYFLLQLPKISNPEPPERIPRRVRSSGVNMSAKDRLDLLMLSRRTMSEVAIT 147
           Q+ L  KKIYFL++LPK+++ E   + PRRVRS G++MSAKDRL+ LMLSRRT+S++++ 
Sbjct: 61  QESLKPKKIYFLVELPKLADDE-VHKAPRRVRSGGIHMSAKDRLECLMLSRRTVSDLSMV 120

Query: 148 RPSPVLAAASSAE----PRFHSGPMQVKMKIPRSQVAKLMEESRNEGEIAEKIINLYLKN 207
           RPS                   G M VKM++P+SQ+AKLMEES++  E+AEKI++LY  N
Sbjct: 121 RPSSTSMVPDGVRLGGGGTSGGGMMTVKMRLPKSQMAKLMEESKDGVEVAEKILDLYTGN 180

Query: 208 EVNSGGGGGGGHGDAVAGSGGVDAGR--HPE-PWKPSLVSSVRENSKVHREVCSSF 256
                            GSGG DAG   H E PWKP L  +V EN K  RE   SF
Sbjct: 181 ----------------GGSGGDDAGNRIHREAPWKPGL-GTVGENFKPKREKRVSF 218

[Close]

BLAST of Cp4.1LG01g20030 vs. TrEMBL
Match: A0A0D2PP13_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G086600 PE=4 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 3.1e-50
Identity = 123/231 (53.25%), Postives = 158/231 (68.40%), Query Frame = 1


Query: 28  MGNSMGGRRRVKVMKVDGEILKLKTPIRVSEVLKDYPD-HVLMESEAVKHYGVKAKPLEP 87
           MGNS+GGR + KVMK+DGE +KLKTPIRV +VLKDYP  HVL++S+ VKHYG++AKPLEP
Sbjct: 1   MGNSIGGRNKAKVMKIDGETIKLKTPIRVWDVLKDYPTGHVLLDSQTVKHYGIRAKPLEP 60

Query: 88  QQDLNKKKIYFLLQLPKISNPEPPERIPRRVRSSGVNMSAKDRLDLLMLSRRTMSEVAIT 147
           Q+ L  KKIYFL++LPK+++ E   + PRRVRS G++MSAKDRL+ LMLSRRT+S++++ 
Sbjct: 61  QESLKPKKIYFLVELPKLADDE-VHKAPRRVRSGGIHMSAKDRLECLMLSRRTVSDLSMV 120

Query: 148 RPSPVLAAASSAE----PRFHSGPMQVKMKIPRSQVAKLMEESRNEGEIAEKIINLYLKN 207
           RPS                   G M VKM++P+SQ+AKLMEES++  E+AEKI++LY  N
Sbjct: 121 RPSSTSMVPDGVRLGGGGTSGGGMMTVKMRLPKSQMAKLMEESKDGVEVAEKILDLYTGN 180

Query: 208 EVNSGGGGGGGHGDAVAGSGGVDAGR--HPE-PWKPSLVSSVRENSKVHRE 251
                            GSGG DAG   H E PWKP L  +V EN K  RE
Sbjct: 181 ----------------GGSGGDDAGNRIHREAPWKPGL-GTVGENFKPKRE 213

[Close]

BLAST of Cp4.1LG01g20030 vs. TrEMBL
Match: A0A0B0MQ13_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_25869 PE=4 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 1.6e-49
Identity = 121/234 (51.71%), Postives = 160/234 (68.38%), Query Frame = 1


Query: 28  MGNSMGGRRRVKVMKVDGEILKLKTPIRVSEVLKDYPD-HVLMESEAVKHYGVKAKPLEP 87
           MGNS+GGR + KVMK+DGE +KLKTP+RV +VLKDYP  HVL++S+ VKHYG++AKPLEP
Sbjct: 1   MGNSIGGRNKAKVMKIDGETIKLKTPVRVWDVLKDYPTGHVLLDSQTVKHYGIRAKPLEP 60

Query: 88  QQDLNKKKIYFLLQLPKISNPEPPERIPRRVRSSGVNMSAKDRLDLLMLSRRTMSEVAIT 147
           Q+ L  KKIYFL++LPK+++ E   + PRRVRS G++MSAKDRL+ LMLSRRT+S++++ 
Sbjct: 61  QESLKPKKIYFLVELPKLADDE-VHKAPRRVRSGGIHMSAKDRLECLMLSRRTVSDLSMV 120

Query: 148 RPSP-------VLAAASSAEPRFHSGPMQVKMKIPRSQVAKLMEESRNEGEIAEKIINLY 207
           +PS        V             G M VKM++P+SQ+AKL+EES++  E+AEKI++LY
Sbjct: 121 QPSSTSIVSDGVRLGGGGGGGTSGGGMMTVKMRLPKSQMAKLVEESKDGVEVAEKILDLY 180

Query: 208 LKNEVNSGGGGGGGHGDAVAGSGGVDAGR--HPE-PWKPSLVSSVRENSKVHRE 251
           + N                 GSGG DAG   H E PWKP L  +V EN K  RE
Sbjct: 181 IGN----------------GGSGGDDAGNRIHREAPWKPGL-GTVGENFKPKRE 216

[Close]

BLAST of Cp4.1LG01g20030 vs. TAIR10
Match: AT1G66480.1 (AT1G66480.1 plastid movement impaired 2)

HSP 1 Score: 162.2 bits (409), Expect = 4.5e-40
Identity = 97/209 (46.41%), Postives = 134/209 (64.11%), Query Frame = 1


Query: 28  MGNSMG-GRRRVKVMKVDGEILKLKTPIRVSEVLKDYPDHVLMESEAVKHYGVKAKPLEP 87
           MGNS+   R+R KVMK+DGE  ++KTP+   EV  DYP +VL++S+AVKH+GV++KPLEP
Sbjct: 1   MGNSITVKRKRAKVMKIDGETFRIKTPVTAREVTADYPGYVLLDSQAVKHFGVRSKPLEP 60

Query: 88  QQDLNKKKIYFLLQLPKISNPEPPE--------RIPRRVRSSGVNMSAKDRLDLLMLSRR 147
            Q L  KK YFL++LPK+    PPE        ++P R   SG+++ AK+RLD+LMLSRR
Sbjct: 61  NQTLKPKKTYFLVELPKL----PPETTAVDTENKLPYRRVMSGIHVGAKERLDMLMLSRR 120

Query: 148 TMSEVAITRPSPVLAAASSAEPRFHSGPMQVKMKIPRSQVAKLMEESRNEGE-IAEKIIN 207
           T+S+V I R            P    G   V++++PRSQ+ KLMEE+ N+   IAEKI+ 
Sbjct: 121 TVSDVTIGRSD----GGDGFGPELGPGHTSVRLRLPRSQITKLMEENNNDASAIAEKILG 180

Query: 208 LYLKNEVNSGGGGGGGHGDAVAGSGGVDA 227
           +Y++     GGG GG  G    GSG + A
Sbjct: 181 IYMERSGELGGGRGGVDGRRELGSGEIKA 201

[Close]

BLAST of Cp4.1LG01g20030 vs. TAIR10
Match: AT2G01340.1 (AT2G01340.1 Encodes a protein whose expression is responsive to nematode infection.)

HSP 1 Score: 143.7 bits (361), Expect = 1.7e-34
Identity = 78/176 (44.32%), Postives = 118/176 (67.05%), Query Frame = 1


Query: 28  MGNSMGGRRRVKVMKVDGEILKLKTPIRVSEVLKDYPDHVLMESEAVKHYGVKAKPLEPQ 87
           MGNS+GG++  KVMK+DGE  KLKTP+   EVLKD+P HVL++SE+VKHYG +AKPLE +
Sbjct: 1   MGNSLGGKKTTKVMKIDGETFKLKTPVTAEEVLKDFPGHVLLDSESVKHYGARAKPLEAK 60

Query: 88  QDLNKKKIYFLLQLPKISNPEPPERIPRRVRSSGVNMSAKDRLDLLMLSRRTMSEVAITR 147
           Q L  K++YF+++  K       E  PRRVR SG+++SAK+RL+ LML+RR+ S+++I +
Sbjct: 61  QRLEAKRLYFVVEPVK-------ECPPRRVR-SGIHVSAKERLESLMLARRSSSDLSILK 120

Query: 148 PSPVLAAASSAEPRFHSGPMQVKMKIPRSQVAKLMEESRNEGEIAEKIINLYLKNE 204
           P                   +VK++IP++++ KL++E   E E  +KI  L++  +
Sbjct: 121 P-----PGGWTTEEEEGAVRRVKVRIPKAELEKLVKEGATEAEATQKIAALFMAKQ 163

[Close]

BLAST of Cp4.1LG01g20030 vs. TAIR10
Match: AT5G37840.1 (AT5G37840.1 BEST Arabidopsis thaliana protein match is: plastid movement impaired 2 (TAIR:AT1G66480.1))

HSP 1 Score: 137.1 bits (344), Expect = 1.5e-32
Identity = 88/199 (44.22%), Postives = 127/199 (63.82%), Query Frame = 1


Query: 28  MGNSMGGRR-RVKVMKVDGEILKLKTPIRVSEVLKDYPDHVLMESEAVKHYGVKAKPLEP 87
           MGN++  RR +VKVMK+DG+I +LKTP+  S+  K+YP  VL++SE VK  GV+AKPLEP
Sbjct: 1   MGNTIMVRRNKVKVMKIDGDIFRLKTPVTASDATKEYPGFVLLDSETVKRLGVRAKPLEP 60

Query: 88  QQDLNKKKIYFLLQLPKISNPEPPERIP-RRVRSSGVNMSAKDRLDLLMLSRRTMSEVAI 147
            Q L     YFL+ LP +   +   ++P RRV S  +++ AK+RL++LMLSRRT+S+V  
Sbjct: 61  NQILKPNHTYFLVDLPPV---DKRNKLPYRRVMSGNIHVGAKERLEMLMLSRRTVSDVGA 120

Query: 148 TRPSPVLAAASSAEPRFHSGPMQVKMKIPRSQVAKLMEESRNEGEIAEKIINLYLKNEVN 207
            R   V        P    G  +V++++PRSQ+ KLMEES +  E+A KII+ Y++   +
Sbjct: 121 ARSDVV-----GDGPEL--GHTRVRLRLPRSQITKLMEESHDASEVAAKIISAYME---S 180

Query: 208 SGGGGGGGHGDAVAGSGGV 225
           SGG  GG   D +    G+
Sbjct: 181 SGGIQGGRDNDGLRQRLGI 186

[Close]

BLAST of Cp4.1LG01g20030 vs. TAIR10
Match: AT1G71015.1 (AT1G71015.1 unknown protein)

HSP 1 Score: 135.6 bits (340), Expect = 4.5e-32
Identity = 77/173 (44.51%), Postives = 115/173 (66.47%), Query Frame = 1


Query: 28  MGNSMGGRRRVKVMKVDGEILKLKTPIRVSEVLKDYPDHVLMESEAVKHYGVKAKPLEPQ 87
           MGNS+G ++   +M ++GE  KLKTP+    V+KD+P HVL+ESEAVK  G++AKPLEP 
Sbjct: 1   MGNSLGTKKTATIMNINGESFKLKTPVEAGTVVKDFPGHVLLESEAVKRLGIRAKPLEPH 60

Query: 88  QDLNKKKIYFLLQLPKISNPEPPERIPRRVRSSGVNMSAKDRLDLLMLSRRTMSEVAITR 147
           Q+L  K+IYF+++LP+       ER PRRVR SG+ MSAK+RL+ L LSRR+ S++++ +
Sbjct: 61  QNLESKRIYFMVELPRTWK----ERTPRRVR-SGIQMSAKERLENLKLSRRSSSDLSVMK 120

Query: 148 PSPVLAAASSAEPRFHSGPMQVKMKIPRSQVAKLMEESRNEGEIAEKIINLYL 201
               +    + E R  S    VK+K+P+ ++ KL +ES +  + + KI  L L
Sbjct: 121 KKTEV----NDEEREVS---SVKLKLPKWKIEKLRKESESGSDFSNKITQLCL 161

[Close]

BLAST of Cp4.1LG01g20030 vs. NCBI nr
Match: gi|700195865|gb|KGN51042.1| (hypothetical protein Csa_5G418770 [Cucumis sativus])

HSP 1 Score: 348.6 bits (893), Expect = 9.6e-93
Identity = 190/239 (79.50%), Postives = 206/239 (86.19%), Query Frame = 1


Query: 28  MGNSMGGRRRVKVMKVDGEILKLKTPIRVSEVLKDYPDHVLMESEAVKHYGVKAKPLEPQ 87
           MGNS+GGR+RVKVMKVDGEILKLK PIRVSEVLKDYPDHVLMESEAVKHYGVKAKPLEPQ
Sbjct: 1   MGNSIGGRKRVKVMKVDGEILKLKLPIRVSEVLKDYPDHVLMESEAVKHYGVKAKPLEPQ 60

Query: 88  QDLNKKKIYFLLQLPKIS--NPEPPERIPRRVRSSGVNMSAKDRLDLLMLSRRTMSEVAI 147
           QDLN+KKIYFLLQLPKI+  N  PP+RIPRRVRSSGV+MSAKDRLDLLMLSRRTMSE+AI
Sbjct: 61  QDLNRKKIYFLLQLPKIAADNRPPPDRIPRRVRSSGVHMSAKDRLDLLMLSRRTMSEIAI 120

Query: 148 TRPSPVLAAASSAEPRFHSGPMQVKMKIPRSQVAKLMEESRNEGEIAEKIINLYLKNEVN 207
           TRPS   A  SSA+PRFHSGPMQVKMKIPRSQVAKLMEES +EGEIAEKII +YLKNEVN
Sbjct: 121 TRPSTTSATDSSAQPRFHSGPMQVKMKIPRSQVAKLMEESASEGEIAEKIIKMYLKNEVN 180

Query: 208 SGGGGGGGHGDAVAGSGGVDAGRHPEPWKPSLVSSVRENSKVHREV---CSSFKFFALT 262
           +GGG           +G V+AG+HPE WKPSLVSSVRENSKVHREV     +F+F   T
Sbjct: 181 TGGG----------SAGDVNAGQHPEHWKPSLVSSVRENSKVHREVRFFLPNFRFIHFT 229

[Close]

BLAST of Cp4.1LG01g20030 vs. NCBI nr
Match: gi|449445092|ref|XP_004140307.1| (PREDICTED: uncharacterized protein At1g66480-like [Cucumis sativus])

HSP 1 Score: 347.4 bits (890), Expect = 2.1e-92
Identity = 188/230 (81.74%), Postives = 202/230 (87.83%), Query Frame = 1


Query: 28  MGNSMGGRRRVKVMKVDGEILKLKTPIRVSEVLKDYPDHVLMESEAVKHYGVKAKPLEPQ 87
           MGNS+GGR+RVKVMKVDGEILKLK PIRVSEVLKDYPDHVLMESEAVKHYGVKAKPLEPQ
Sbjct: 1   MGNSIGGRKRVKVMKVDGEILKLKLPIRVSEVLKDYPDHVLMESEAVKHYGVKAKPLEPQ 60

Query: 88  QDLNKKKIYFLLQLPKIS--NPEPPERIPRRVRSSGVNMSAKDRLDLLMLSRRTMSEVAI 147
           QDLN+KKIYFLLQLPKI+  N  PP+RIPRRVRSSGV+MSAKDRLDLLMLSRRTMSE+AI
Sbjct: 61  QDLNRKKIYFLLQLPKIAADNRPPPDRIPRRVRSSGVHMSAKDRLDLLMLSRRTMSEIAI 120

Query: 148 TRPSPVLAAASSAEPRFHSGPMQVKMKIPRSQVAKLMEESRNEGEIAEKIINLYLKNEVN 207
           TRPS   A  SSA+PRFHSGPMQVKMKIPRSQVAKLMEES +EGEIAEKII +YLKNEVN
Sbjct: 121 TRPSTTSATDSSAQPRFHSGPMQVKMKIPRSQVAKLMEESASEGEIAEKIIKMYLKNEVN 180

Query: 208 SGGGGGGGHGDAVAGSGGVDAGRHPEPWKPSLVSSVRENSKVHREVCSSF 256
           +GGG           +G V+AG+HPE WKPSLVSSVRENSKVHRE   SF
Sbjct: 181 TGGG----------SAGDVNAGQHPEHWKPSLVSSVRENSKVHREKRVSF 220

[Close]

BLAST of Cp4.1LG01g20030 vs. NCBI nr
Match: gi|590652162|ref|XP_007033077.1| (Plastid movement impaired 2 [Theobroma cacao])

HSP 1 Score: 220.7 bits (561), Expect = 3.0e-54
Identity = 125/229 (54.59%), Postives = 161/229 (70.31%), Query Frame = 1


Query: 28  MGNSMGGRRRVKVMKVDGEILKLKTPIRVSEVLKDYPDHVLMESEAVKHYGVKAKPLEPQ 87
           MGNSMGGR++ KVMK+DGE  KLKTP+R  +V+KDYP HVL++SEAVKH+G++AKPLEPQ
Sbjct: 1   MGNSMGGRKKAKVMKIDGETFKLKTPVRAWDVVKDYPGHVLLDSEAVKHFGIRAKPLEPQ 60

Query: 88  QDLNKKKIYFLLQLPKISNPEPPERIPRRVRSSGVNMSAKDRLDLLMLSRRTMSEVAITR 147
           QDL  KKIYFL++LPK     P E+ PRRVRS G++MSAKDRL+ LMLSRR++S++++ R
Sbjct: 61  QDLKPKKIYFLVELPKF----PEEKAPRRVRSGGIHMSAKDRLECLMLSRRSVSDLSMVR 120

Query: 148 PSPVLAAASSAEPRFHSGPMQVKMKIPRSQVAKLMEESRNEGEIAEKIINLYLKNEVNSG 207
           PS  L +         SG M VKM++P+SQ+AKL+EESR+  E+AEKI++LY++N     
Sbjct: 121 PSSSLGSDGLGR---SSGGMTVKMRLPKSQMAKLVEESRDGVEVAEKILDLYVEN----- 180

Query: 208 GGGGGGHGDAVAGSGGVDAGRHPE-PWKPSLVSSVRENSKVHREVCSSF 256
                      AG G  D   H E PWKP L  S+ EN K  RE   SF
Sbjct: 181 -----------AGGGDTDNQMHLEAPWKPGL-GSIGENFKAKREKRVSF 205

[Close]

BLAST of Cp4.1LG01g20030 vs. NCBI nr
Match: gi|1009126577|ref|XP_015880231.1| (PREDICTED: uncharacterized protein At1g66480 [Ziziphus jujuba])

HSP 1 Score: 209.1 bits (531), Expect = 9.1e-51
Identity = 119/228 (52.19%), Postives = 168/228 (73.68%), Query Frame = 1


Query: 28  MGNSMGGRRRVKVMKVDGEILKLKTPIRVSEVLKDYPDHVLMESEAVKHYGVKAKPLEPQ 87
           MGNS+GGR++ KVMK++GE  KLKTPI+V +V+KDYP HVL++SEAVKH+G++AKP+EPQ
Sbjct: 1   MGNSIGGRKKAKVMKINGETFKLKTPIQVWDVVKDYPGHVLLDSEAVKHFGIRAKPMEPQ 60

Query: 88  QDLNKKKIYFLLQLPKISNPEPPERIPRRVRSSGVNMSAKDRLDLLMLSRRTMSEVAITR 147
           Q L  KKIYFL++LPK  + +  ++  RRVR SG+NMSAKDRL+ LMLSRR++S++++ R
Sbjct: 61  QQLRPKKIYFLVELPKFLDHDQDQKATRRVR-SGINMSAKDRLECLMLSRRSVSDLSMVR 120

Query: 148 PSPVLAAASSAEPRFHSGPMQVKMKIPRSQVAKLMEESRNEGEIAEKIINLYLKNEVNSG 207
                  +SS +   +SGPM+VKM++P+SQVAKLMEES++  E+AEKII+LY++N     
Sbjct: 121 -----KPSSSMDSGSNSGPMRVKMRLPKSQVAKLMEESKDGVEVAEKIISLYMEN----- 180

Query: 208 GGGGGGHGDAVAGSGGV-----DAGRHPEPWKPSLVSSVRENSKVHRE 251
           GGG  GH   + G  G+     DA R P P  P+ + S+ E+ K  ++
Sbjct: 181 GGGADGHMPPLEGGDGLLHRHSDARRKP-PRLPAGLGSIGEDCKADKK 216

[Close]

BLAST of Cp4.1LG01g20030 vs. NCBI nr
Match: gi|823122597|ref|XP_012471773.1| (PREDICTED: uncharacterized protein At1g66480 isoform X1 [Gossypium raimondii])

HSP 1 Score: 208.0 bits (528), Expect = 2.0e-50
Identity = 125/236 (52.97%), Postives = 160/236 (67.80%), Query Frame = 1


Query: 28  MGNSMGGRRRVKVMKVDGEILKLKTPIRVSEVLKDYPD-HVLMESEAVKHYGVKAKPLEP 87
           MGNS+GGR + KVMK+DGE +KLKTPIRV +VLKDYP  HVL++S+ VKHYG++AKPLEP
Sbjct: 1   MGNSIGGRNKAKVMKIDGETIKLKTPIRVWDVLKDYPTGHVLLDSQTVKHYGIRAKPLEP 60

Query: 88  QQDLNKKKIYFLLQLPKISNPEPPERIPRRVRSSGVNMSAKDRLDLLMLSRRTMSEVAIT 147
           Q+ L  KKIYFL++LPK+++ E   + PRRVRS G++MSAKDRL+ LMLSRRT+S++++ 
Sbjct: 61  QESLKPKKIYFLVELPKLADDE-VHKAPRRVRSGGIHMSAKDRLECLMLSRRTVSDLSMV 120

Query: 148 RPSPVLAAASSAE----PRFHSGPMQVKMKIPRSQVAKLMEESRNEGEIAEKIINLYLKN 207
           RPS                   G M VKM++P+SQ+AKLMEES++  E+AEKI++LY  N
Sbjct: 121 RPSSTSMVPDGVRLGGGGTSGGGMMTVKMRLPKSQMAKLMEESKDGVEVAEKILDLYTGN 180

Query: 208 EVNSGGGGGGGHGDAVAGSGGVDAGR--HPE-PWKPSLVSSVRENSKVHREVCSSF 256
                            GSGG DAG   H E PWKP L  +V EN K  RE   SF
Sbjct: 181 ----------------GGSGGDDAGNRIHREAPWKPGL-GTVGENFKPKREKRVSF 218

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g20030 vs. Swiss-Prot


Match Name	E-value	Identity	Description
Y1648_ARATH	8.0e-39	46.41	Uncharacterized protein At1g66480 OS=Arabidopsis thaliana GN=At1g66480 PE=2 SV=1	[more]

BLAST of Cp4.1LG01g20030 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KRN5_CUCSA	6.7e-93	79.50	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G418770 PE=4 SV=1	[more]
A0A061EH62_THECC	2.1e-54	54.59	Plastid movement impaired 2 OS=Theobroma cacao GN=TCM_019256 PE=4 SV=1	[more]
A0A0D2QMN0_GOSRA	1.4e-50	52.97	Uncharacterized protein OS=Gossypium raimondii GN=B456_001G086600 PE=4 SV=1	[more]
A0A0D2PP13_GOSRA	3.1e-50	53.25	Uncharacterized protein OS=Gossypium raimondii GN=B456_001G086600 PE=4 SV=1	[more]
A0A0B0MQ13_GOSAR	1.6e-49	51.71	Uncharacterized protein OS=Gossypium arboreum GN=F383_25869 PE=4 SV=1	[more]

BLAST of Cp4.1LG01g20030 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G66480.1	4.5e-40	46.41	plastid movement impaired 2	[more]
AT2G01340.1	1.7e-34	44.32	Encodes a protein whose expression is responsive to nematode infecti...	[more]
AT5G37840.1	1.5e-32	44.22	BEST Arabidopsis thaliana protein match is: plastid movement impaire...	[more]
AT1G71015.1	4.5e-32	44.51	unknown protein	[more]

BLAST of Cp4.1LG01g20030 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700195865\|gb\|KGN51042.1\|	9.6e-93	79.50	hypothetical protein Csa_5G418770 [Cucumis sativus]	[more]
gi\|449445092\|ref\|XP_004140307.1\|	2.1e-92	81.74	PREDICTED: uncharacterized protein At1g66480-like [Cucumis sativus]	[more]
gi\|590652162\|ref\|XP_007033077.1\|	3.0e-54	54.59	Plastid movement impaired 2 [Theobroma cacao]	[more]
gi\|1009126577\|ref\|XP_015880231.1\|	9.1e-51	52.19	PREDICTED: uncharacterized protein At1g66480 [Ziziphus jujuba]	[more]
gi\|823122597\|ref\|XP_012471773.1\|	2.0e-50	52.97	PREDICTED: uncharacterized protein At1g66480 isoform X1 [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR025322	DUF4228_plant

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g20030.1	Cp4.1LG01g20030.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025322	Protein of unknown function DUF4228, plant	PFAM	PF14009	DUF4228	coord: 28..238 score: 1.1
None	No IPR available	PANTHER	PTHR33148	FAMILY NOT NAMED	coord: 29..259 score: 3.7
None	No IPR available	PANTHER	PTHR33148:SF6	SUBFAMILY NOT NAMED	coord: 29..259 score: 3.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG01g20030	Cucsa.034830	Cucumber (Gy14) v1	cgycpeB0018
Cp4.1LG01g20030	CmaCh04G022990	Cucurbita maxima (Rimu)	cmacpeB721
Cp4.1LG01g20030	CmoCh04G024030	Cucurbita moschata (Rifu)	cmocpeB673
Cp4.1LG01g20030	Cla019767	Watermelon (97103) v1	cpewmB399
Cp4.1LG01g20030	Csa5G418770	Cucumber (Chinese Long) v2	cpecuB441
Cp4.1LG01g20030	ClCG03G008730	Watermelon (Charleston Gray)	cpewcgB379
Cp4.1LG01g20030	CSPI05G14920	Wild cucumber (PI 183967)	cpecpiB441
Cp4.1LG01g20030	Lsi09G009350	Bottle gourd (USVL1VR-Ls)	cpelsiB311
Cp4.1LG01g20030	CsaV3_5G024000	Cucumber (Chinese Long) v3	cpecucB0545
Cp4.1LG01g20030	Bhi12G001074	Wax gourd	cpewgoB0490
Cp4.1LG01g20030	CsGy5G014780	Cucumber (Gy14) v2	cgybcpeB650
Cp4.1LG01g20030	Carg18264	Silver-seed gourd	carcpeB0747

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG01g20030	Silver-seed gourd	carcpeB1158
Cp4.1LG01g20030	Cucurbita pepo (Zucchini)	cpecpeB199
Cp4.1LG01g20030	Cucurbita maxima (Rimu)	cmacpeB318
Cp4.1LG01g20030	Cucurbita moschata (Rifu)	cmocpeB280
Cp4.1LG01g20030	Melon (DHL92) v3.5.1	cpemeB360
Cp4.1LG01g20030	Melon (DHL92) v3.6.1	cpemedB420