CmaCh04G022990 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh04G022990
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Plastid movement impaired 2
Location	Cma_Chr04 : 16032893 .. 16033701 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAAACGGAAATCGAGGGAAAATTGGGGAAATGGGGAACAGTATTGGGGGAAGACGGAGAGTAAAGGTAATGAAAGTGGACGGAGAGATTCTGAAATTGAAGACGCCGATTCGAGTTTCAGAGGTTTTGAAAGATTATCCGGATCATGTTCTGATGGAATCGGAGGCTGTTAAGCATTACGGAGTGAAGGCCAAGCCATTAGAGCCGCAACAGGATTTGAACAAGAAGAAGATTTATTTTCTTCTACAGTTACCGAAGATCACCAATCCGGAACCGCCAGAGCGGATTCCGAGGCGAGTTCGTTCTTCTGGCGTCAATATGTCCGCCAAGGATCGTCTCGACCTTCTCATGCTCTCGCGTAGGACGATGTCGGAGGTCGCTATTACTAGACCGTCTCCAGTACTGGCCACTGCTTCCTCTGCTGAGCCGCGCTTCCATAGCGGCCCGATGCAGGTTAAAATGAAGATTCCGAGATCGCAGGTCGCTAAATTGATGGAGGAGAGTCGGAATGAAGGAGAAATCGCGGAGAAGATTATAAATCTTTATTTGAAGAACGAGGTCAATAGCGGCGGCGGTGGTGGCCATGGCGATGCCGTTGCCGGTTCCGGTGGCGTCGACGCCGGCCGTCATCCGGAGCCGTGGAAACCCAGCCTTGTTAGTAGCGTTAGGGAAAATTCGAAGGTTCATCGCGAGGTATGTTCGTCGTTCAATTTTTTCGCTCTGACAGTCCATTAATTTTATTTTCATTTATTTATTAAATATCCTTTTAGAGATTAATTATTTTTTTTTTAAAAAAGCATTTTAGCTAA

mRNA sequence

AGAAACGGAAATCGAGGGAAAATTGGGGAAATGGGGAACAGTATTGGGGGAAGACGGAGAGTAAAGGTAATGAAAGTGGACGGAGAGATTCTGAAATTGAAGACGCCGATTCGAGTTTCAGAGGTTTTGAAAGATTATCCGGATCATGTTCTGATGGAATCGGAGGCTGTTAAGCATTACGGAGTGAAGGCCAAGCCATTAGAGCCGCAACAGGATTTGAACAAGAAGAAGATTTATTTTCTTCTACAGTTACCGAAGATCACCAATCCGGAACCGCCAGAGCGGATTCCGAGGCGAGTTCGTTCTTCTGGCGTCAATATGTCCGCCAAGGATCGTCTCGACCTTCTCATGCTCTCGCGTAGGACGATGTCGGAGGTCGCTATTACTAGACCGTCTCCAGTACTGGCCACTGCTTCCTCTGCTGAGCCGCGCTTCCATAGCGGCCCGATGCAGGTTAAAATGAAGATTCCGAGATCGCAGGTCGCTAAATTGATGGAGGAGAGTCGGAATGAAGGAGAAATCGCGGAGAAGATTATAAATCTTTATTTGAAGAACGAGGTCAATAGCGGCGGCGGTGGTGGCCATGGCGATGCCGTTGCCGGTTCCGGTGGCGTCGACGCCGGCCGTCATCCGGAGCCGTGGAAACCCAGCCTTGTTAGTAGCGTTAGGGAAAATTCGAAGGTTCATCGCGAGCATTTTAGCTAA

Coding sequence (CDS)

ATGGGGAACAGTATTGGGGGAAGACGGAGAGTAAAGGTAATGAAAGTGGACGGAGAGATTCTGAAATTGAAGACGCCGATTCGAGTTTCAGAGGTTTTGAAAGATTATCCGGATCATGTTCTGATGGAATCGGAGGCTGTTAAGCATTACGGAGTGAAGGCCAAGCCATTAGAGCCGCAACAGGATTTGAACAAGAAGAAGATTTATTTTCTTCTACAGTTACCGAAGATCACCAATCCGGAACCGCCAGAGCGGATTCCGAGGCGAGTTCGTTCTTCTGGCGTCAATATGTCCGCCAAGGATCGTCTCGACCTTCTCATGCTCTCGCGTAGGACGATGTCGGAGGTCGCTATTACTAGACCGTCTCCAGTACTGGCCACTGCTTCCTCTGCTGAGCCGCGCTTCCATAGCGGCCCGATGCAGGTTAAAATGAAGATTCCGAGATCGCAGGTCGCTAAATTGATGGAGGAGAGTCGGAATGAAGGAGAAATCGCGGAGAAGATTATAAATCTTTATTTGAAGAACGAGGTCAATAGCGGCGGCGGTGGTGGCCATGGCGATGCCGTTGCCGGTTCCGGTGGCGTCGACGCCGGCCGTCATCCGGAGCCGTGGAAACCCAGCCTTGTTAGTAGCGTTAGGGAAAATTCGAAGGTTCATCGCGAGCATTTTAGCTAA

Protein sequence

MGNSIGGRRRVKVMKVDGEILKLKTPIRVSEVLKDYPDHVLMESEAVKHYGVKAKPLEPQQDLNKKKIYFLLQLPKITNPEPPERIPRRVRSSGVNMSAKDRLDLLMLSRRTMSEVAITRPSPVLATASSAEPRFHSGPMQVKMKIPRSQVAKLMEESRNEGEIAEKIINLYLKNEVNSGGGGGHGDAVAGSGGVDAGRHPEPWKPSLVSSVRENSKVHREHFS

Homology

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BLAST of CmaCh04G022990 vs. Swiss-Prot
Match: Y1648_ARATH (Uncharacterized protein At1g66480 OS=Arabidopsis thaliana GN=At1g66480 PE=2 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 1.2e-38
Identity = 95/205 (46.34%), Postives = 133/205 (64.88%), Query Frame = 1


Query: 1   MGNSIG-GRRRVKVMKVDGEILKLKTPIRVSEVLKDYPDHVLMESEAVKHYGVKAKPLEP 60
           MGNSI   R+R KVMK+DGE  ++KTP+   EV  DYP +VL++S+AVKH+GV++KPLEP
Sbjct: 1   MGNSITVKRKRAKVMKIDGETFRIKTPVTAREVTADYPGYVLLDSQAVKHFGVRSKPLEP 60

Query: 61  QQDLNKKKIYFLLQLPKI----TNPEPPERIPRRVRSSGVNMSAKDRLDLLMLSRRTMSE 120
            Q L  KK YFL++LPK+    T  +   ++P R   SG+++ AK+RLD+LMLSRRT+S+
Sbjct: 61  NQTLKPKKTYFLVELPKLPPETTAVDTENKLPYRRVMSGIHVGAKERLDMLMLSRRTVSD 120

Query: 121 VAITRPSPVLATASSAEPRFHSGPMQVKMKIPRSQVAKLMEESRNEGE-IAEKIINLYLK 180
           V I R            P    G   V++++PRSQ+ KLMEE+ N+   IAEKI+ +Y++
Sbjct: 121 VTIGRSD----GGDGFGPELGPGHTSVRLRLPRSQITKLMEENNNDASAIAEKILGIYME 180

Query: 181 --NEVNSGGGGGHGDAVAGSGGVDA 198
              E+  G GG  G    GSG + A
Sbjct: 181 RSGELGGGRGGVDGRRELGSGEIKA 201

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BLAST of CmaCh04G022990 vs. TrEMBL
Match: A0A0A0KRN5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G418770 PE=4 SV=1)

HSP 1 Score: 351.3 bits (900), Expect = 8.8e-94
Identity = 188/223 (84.30%), Postives = 200/223 (89.69%), Query Frame = 1


Query: 1   MGNSIGGRRRVKVMKVDGEILKLKTPIRVSEVLKDYPDHVLMESEAVKHYGVKAKPLEPQ 60
           MGNSIGGR+RVKVMKVDGEILKLK PIRVSEVLKDYPDHVLMESEAVKHYGVKAKPLEPQ
Sbjct: 1   MGNSIGGRKRVKVMKVDGEILKLKLPIRVSEVLKDYPDHVLMESEAVKHYGVKAKPLEPQ 60

Query: 61  QDLNKKKIYFLLQLPKIT--NPEPPERIPRRVRSSGVNMSAKDRLDLLMLSRRTMSEVAI 120
           QDLN+KKIYFLLQLPKI   N  PP+RIPRRVRSSGV+MSAKDRLDLLMLSRRTMSE+AI
Sbjct: 61  QDLNRKKIYFLLQLPKIAADNRPPPDRIPRRVRSSGVHMSAKDRLDLLMLSRRTMSEIAI 120

Query: 121 TRPSPVLATASSAEPRFHSGPMQVKMKIPRSQVAKLMEESRNEGEIAEKIINLYLKNEVN 180
           TRPS   AT SSA+PRFHSGPMQVKMKIPRSQVAKLMEES +EGEIAEKII +YLKNEVN
Sbjct: 121 TRPSTTSATDSSAQPRFHSGPMQVKMKIPRSQVAKLMEESASEGEIAEKIIKMYLKNEVN 180

Query: 181 SGGGGGHGDAVAGSGGVDAGRHPEPWKPSLVSSVRENSKVHRE 222
           +GGG         +G V+AG+HPE WKPSLVSSVRENSKVHRE
Sbjct: 181 TGGG--------SAGDVNAGQHPEHWKPSLVSSVRENSKVHRE 215

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BLAST of CmaCh04G022990 vs. TrEMBL
Match: A0A061EH62_THECC (Plastid movement impaired 2 OS=Theobroma cacao GN=TCM_019256 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 2.3e-54
Identity = 122/222 (54.95%), Postives = 159/222 (71.62%), Query Frame = 1


Query: 1   MGNSIGGRRRVKVMKVDGEILKLKTPIRVSEVLKDYPDHVLMESEAVKHYGVKAKPLEPQ 60
           MGNS+GGR++ KVMK+DGE  KLKTP+R  +V+KDYP HVL++SEAVKH+G++AKPLEPQ
Sbjct: 1   MGNSMGGRKKAKVMKIDGETFKLKTPVRAWDVVKDYPGHVLLDSEAVKHFGIRAKPLEPQ 60

Query: 61  QDLNKKKIYFLLQLPKITNPEPPERIPRRVRSSGVNMSAKDRLDLLMLSRRTMSEVAITR 120
           QDL  KKIYFL++LPK     P E+ PRRVRS G++MSAKDRL+ LMLSRR++S++++ R
Sbjct: 61  QDLKPKKIYFLVELPKF----PEEKAPRRVRSGGIHMSAKDRLECLMLSRRSVSDLSMVR 120

Query: 121 PSPVLATASSAEPRFHSGPMQVKMKIPRSQVAKLMEESRNEGEIAEKIINLYLKNEVNSG 180
           PS  L +         SG M VKM++P+SQ+AKL+EESR+  E+AEKI++LY++N     
Sbjct: 121 PSSSLGSDGLGR---SSGGMTVKMRLPKSQMAKLVEESRDGVEVAEKILDLYVEN----- 180

Query: 181 GGGGHGDAVAGSGGVDAGRHPE-PWKPSLVSSVRENSKVHRE 222
                    AG G  D   H E PWKP L  S+ EN K  RE
Sbjct: 181 ---------AGGGDTDNQMHLEAPWKPGL-GSIGENFKAKRE 200

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BLAST of CmaCh04G022990 vs. TrEMBL
Match: A0A0D2PP13_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G086600 PE=4 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 1.9e-51
Identity = 125/232 (53.88%), Postives = 158/232 (68.10%), Query Frame = 1


Query: 1   MGNSIGGRRRVKVMKVDGEILKLKTPIRVSEVLKDYPD-HVLMESEAVKHYGVKAKPLEP 60
           MGNSIGGR + KVMK+DGE +KLKTPIRV +VLKDYP  HVL++S+ VKHYG++AKPLEP
Sbjct: 1   MGNSIGGRNKAKVMKIDGETIKLKTPIRVWDVLKDYPTGHVLLDSQTVKHYGIRAKPLEP 60

Query: 61  QQDLNKKKIYFLLQLPKITNPEPPERIPRRVRSSGVNMSAKDRLDLLMLSRRTMSEVAIT 120
           Q+ L  KKIYFL++LPK+ + E   + PRRVRS G++MSAKDRL+ LMLSRRT+S++++ 
Sbjct: 61  QESLKPKKIYFLVELPKLADDE-VHKAPRRVRSGGIHMSAKDRLECLMLSRRTVSDLSMV 120

Query: 121 RPSPVLATASSAE----PRFHSGPMQVKMKIPRSQVAKLMEESRNEGEIAEKIINLYLKN 180
           RPS                   G M VKM++P+SQ+AKLMEES++  E+AEKI++LY  N
Sbjct: 121 RPSSTSMVPDGVRLGGGGTSGGGMMTVKMRLPKSQMAKLMEESKDGVEVAEKILDLYTGN 180

Query: 181 EVNSGGGGGHGDAVAGSGGVDAGR--HPE-PWKPSLVSSVRENSKVHREHFS 225
                          GSGG DAG   H E PWKP L  +V EN K  RE  S
Sbjct: 181 --------------GGSGGDDAGNRIHREAPWKPGL-GTVGENFKPKRERVS 216

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BLAST of CmaCh04G022990 vs. TrEMBL
Match: A0A0D2QMN0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G086600 PE=4 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 4.1e-51
Identity = 124/229 (54.15%), Postives = 157/229 (68.56%), Query Frame = 1


Query: 1   MGNSIGGRRRVKVMKVDGEILKLKTPIRVSEVLKDYPD-HVLMESEAVKHYGVKAKPLEP 60
           MGNSIGGR + KVMK+DGE +KLKTPIRV +VLKDYP  HVL++S+ VKHYG++AKPLEP
Sbjct: 1   MGNSIGGRNKAKVMKIDGETIKLKTPIRVWDVLKDYPTGHVLLDSQTVKHYGIRAKPLEP 60

Query: 61  QQDLNKKKIYFLLQLPKITNPEPPERIPRRVRSSGVNMSAKDRLDLLMLSRRTMSEVAIT 120
           Q+ L  KKIYFL++LPK+ + E   + PRRVRS G++MSAKDRL+ LMLSRRT+S++++ 
Sbjct: 61  QESLKPKKIYFLVELPKLADDE-VHKAPRRVRSGGIHMSAKDRLECLMLSRRTVSDLSMV 120

Query: 121 RPSPVLATASSAE----PRFHSGPMQVKMKIPRSQVAKLMEESRNEGEIAEKIINLYLKN 180
           RPS                   G M VKM++P+SQ+AKLMEES++  E+AEKI++LY  N
Sbjct: 121 RPSSTSMVPDGVRLGGGGTSGGGMMTVKMRLPKSQMAKLMEESKDGVEVAEKILDLYTGN 180

Query: 181 EVNSGGGGGHGDAVAGSGGVDAGR--HPE-PWKPSLVSSVRENSKVHRE 222
                          GSGG DAG   H E PWKP L  +V EN K  RE
Sbjct: 181 --------------GGSGGDDAGNRIHREAPWKPGL-GTVGENFKPKRE 213

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BLAST of CmaCh04G022990 vs. TrEMBL
Match: A0A0B0MQ13_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_25869 PE=4 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 9.2e-51
Identity = 121/234 (51.71%), Postives = 161/234 (68.80%), Query Frame = 1


Query: 1   MGNSIGGRRRVKVMKVDGEILKLKTPIRVSEVLKDYPD-HVLMESEAVKHYGVKAKPLEP 60
           MGNSIGGR + KVMK+DGE +KLKTP+RV +VLKDYP  HVL++S+ VKHYG++AKPLEP
Sbjct: 1   MGNSIGGRNKAKVMKIDGETIKLKTPVRVWDVLKDYPTGHVLLDSQTVKHYGIRAKPLEP 60

Query: 61  QQDLNKKKIYFLLQLPKITNPEPPERIPRRVRSSGVNMSAKDRLDLLMLSRRTMSEVAIT 120
           Q+ L  KKIYFL++LPK+ + E   + PRRVRS G++MSAKDRL+ LMLSRRT+S++++ 
Sbjct: 61  QESLKPKKIYFLVELPKLADDE-VHKAPRRVRSGGIHMSAKDRLECLMLSRRTVSDLSMV 120

Query: 121 RPSPVLATASSAE-------PRFHSGPMQVKMKIPRSQVAKLMEESRNEGEIAEKIINLY 180
           +PS     +                G M VKM++P+SQ+AKL+EES++  E+AEKI++LY
Sbjct: 121 QPSSTSIVSDGVRLGGGGGGGTSGGGMMTVKMRLPKSQMAKLVEESKDGVEVAEKILDLY 180

Query: 181 LKNEVNSGGGGGHGDAVAGSGGVDAGR--HPE-PWKPSLVSSVRENSKVHREHF 224
           + N               GSGG DAG   H E PWKP L  +V EN K  RE++
Sbjct: 181 IGN--------------GGSGGDDAGNRIHREAPWKPGL-GTVGENFKPKRENY 218

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BLAST of CmaCh04G022990 vs. TAIR10
Match: AT1G66480.1 (AT1G66480.1 plastid movement impaired 2)

HSP 1 Score: 161.4 bits (407), Expect = 6.5e-40
Identity = 95/205 (46.34%), Postives = 133/205 (64.88%), Query Frame = 1


Query: 1   MGNSIG-GRRRVKVMKVDGEILKLKTPIRVSEVLKDYPDHVLMESEAVKHYGVKAKPLEP 60
           MGNSI   R+R KVMK+DGE  ++KTP+   EV  DYP +VL++S+AVKH+GV++KPLEP
Sbjct: 1   MGNSITVKRKRAKVMKIDGETFRIKTPVTAREVTADYPGYVLLDSQAVKHFGVRSKPLEP 60

Query: 61  QQDLNKKKIYFLLQLPKI----TNPEPPERIPRRVRSSGVNMSAKDRLDLLMLSRRTMSE 120
            Q L  KK YFL++LPK+    T  +   ++P R   SG+++ AK+RLD+LMLSRRT+S+
Sbjct: 61  NQTLKPKKTYFLVELPKLPPETTAVDTENKLPYRRVMSGIHVGAKERLDMLMLSRRTVSD 120

Query: 121 VAITRPSPVLATASSAEPRFHSGPMQVKMKIPRSQVAKLMEESRNEGE-IAEKIINLYLK 180
           V I R            P    G   V++++PRSQ+ KLMEE+ N+   IAEKI+ +Y++
Sbjct: 121 VTIGRSD----GGDGFGPELGPGHTSVRLRLPRSQITKLMEENNNDASAIAEKILGIYME 180

Query: 181 --NEVNSGGGGGHGDAVAGSGGVDA 198
              E+  G GG  G    GSG + A
Sbjct: 181 RSGELGGGRGGVDGRRELGSGEIKA 201

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BLAST of CmaCh04G022990 vs. TAIR10
Match: AT2G01340.1 (AT2G01340.1 Encodes a protein whose expression is responsive to nematode infection.)

HSP 1 Score: 146.4 bits (368), Expect = 2.2e-35
Identity = 79/176 (44.89%), Postives = 119/176 (67.61%), Query Frame = 1


Query: 1   MGNSIGGRRRVKVMKVDGEILKLKTPIRVSEVLKDYPDHVLMESEAVKHYGVKAKPLEPQ 60
           MGNS+GG++  KVMK+DGE  KLKTP+   EVLKD+P HVL++SE+VKHYG +AKPLE +
Sbjct: 1   MGNSLGGKKTTKVMKIDGETFKLKTPVTAEEVLKDFPGHVLLDSESVKHYGARAKPLEAK 60

Query: 61  QDLNKKKIYFLLQLPKITNPEPPERIPRRVRSSGVNMSAKDRLDLLMLSRRTMSEVAITR 120
           Q L  K++YF+++  K       E  PRRVR SG+++SAK+RL+ LML+RR+ S+++I +
Sbjct: 61  QRLEAKRLYFVVEPVK-------ECPPRRVR-SGIHVSAKERLESLMLARRSSSDLSILK 120

Query: 121 PSPVLATASSAEPRFHSGPMQVKMKIPRSQVAKLMEESRNEGEIAEKIINLYLKNE 177
           P     T             +VK++IP++++ KL++E   E E  +KI  L++  +
Sbjct: 121 PPGGWTTEEE-----EGAVRRVKVRIPKAELEKLVKEGATEAEATQKIAALFMAKQ 163

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BLAST of CmaCh04G022990 vs. TAIR10
Match: AT5G37840.1 (AT5G37840.1 BEST Arabidopsis thaliana protein match is: plastid movement impaired 2 (TAIR:AT1G66480.1))

HSP 1 Score: 145.2 bits (365), Expect = 4.8e-35
Identity = 91/227 (40.09%), Postives = 136/227 (59.91%), Query Frame = 1


Query: 1   MGNSIGGRR-RVKVMKVDGEILKLKTPIRVSEVLKDYPDHVLMESEAVKHYGVKAKPLEP 60
           MGN+I  RR +VKVMK+DG+I +LKTP+  S+  K+YP  VL++SE VK  GV+AKPLEP
Sbjct: 1   MGNTIMVRRNKVKVMKIDGDIFRLKTPVTASDATKEYPGFVLLDSETVKRLGVRAKPLEP 60

Query: 61  QQDLNKKKIYFLLQLPKITNPEPPERIP-RRVRSSGVNMSAKDRLDLLMLSRRTMSEVAI 120
            Q L     YFL+ LP +   +   ++P RRV S  +++ AK+RL++LMLSRRT+S+V  
Sbjct: 61  NQILKPNHTYFLVDLPPV---DKRNKLPYRRVMSGNIHVGAKERLEMLMLSRRTVSDVGA 120

Query: 121 TRPSPVLATASSAEPRFHSGPMQVKMKIPRSQVAKLMEESRNEGEIAEKIINLYLKNEVN 180
            R S V+            G  +V++++PRSQ+ KLMEES +  E+A KII+ Y+++   
Sbjct: 121 AR-SDVVGDGPEL------GHTRVRLRLPRSQITKLMEESHDASEVAAKIISAYMES--- 180

Query: 181 SGGGGGHGDAVAGSGGVDAGRHPEPWKPSL-VSSVRENSKVHREHFS 225
                        SGG+  GR  +  +  L ++ +  + K   +H S
Sbjct: 181 -------------SGGIQGGRDNDGLRQRLGIAEINNHYKAREKHVS 201

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BLAST of CmaCh04G022990 vs. TAIR10
Match: AT1G71015.1 (AT1G71015.1 unknown protein)

HSP 1 Score: 138.7 bits (348), Expect = 4.5e-33
Identity = 78/173 (45.09%), Postives = 115/173 (66.47%), Query Frame = 1


Query: 1   MGNSIGGRRRVKVMKVDGEILKLKTPIRVSEVLKDYPDHVLMESEAVKHYGVKAKPLEPQ 60
           MGNS+G ++   +M ++GE  KLKTP+    V+KD+P HVL+ESEAVK  G++AKPLEP 
Sbjct: 1   MGNSLGTKKTATIMNINGESFKLKTPVEAGTVVKDFPGHVLLESEAVKRLGIRAKPLEPH 60

Query: 61  QDLNKKKIYFLLQLPKITNPEPPERIPRRVRSSGVNMSAKDRLDLLMLSRRTMSEVAITR 120
           Q+L  K+IYF+++LP+       ER PRRVR SG+ MSAK+RL+ L LSRR+ S++++ +
Sbjct: 61  QNLESKRIYFMVELPRTWK----ERTPRRVR-SGIQMSAKERLENLKLSRRSSSDLSVMK 120

Query: 121 PSPVLATASSAEPRFHSGPMQVKMKIPRSQVAKLMEESRNEGEIAEKIINLYL 174
                 T  + E R  S    VK+K+P+ ++ KL +ES +  + + KI  L L
Sbjct: 121 KK----TEVNDEEREVS---SVKLKLPKWKIEKLRKESESGSDFSNKITQLCL 161

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BLAST of CmaCh04G022990 vs. NCBI nr
Match: gi|449445092|ref|XP_004140307.1| (PREDICTED: uncharacterized protein At1g66480-like [Cucumis sativus])

HSP 1 Score: 351.3 bits (900), Expect = 1.3e-93
Identity = 188/223 (84.30%), Postives = 200/223 (89.69%), Query Frame = 1


Query: 1   MGNSIGGRRRVKVMKVDGEILKLKTPIRVSEVLKDYPDHVLMESEAVKHYGVKAKPLEPQ 60
           MGNSIGGR+RVKVMKVDGEILKLK PIRVSEVLKDYPDHVLMESEAVKHYGVKAKPLEPQ
Sbjct: 1   MGNSIGGRKRVKVMKVDGEILKLKLPIRVSEVLKDYPDHVLMESEAVKHYGVKAKPLEPQ 60

Query: 61  QDLNKKKIYFLLQLPKIT--NPEPPERIPRRVRSSGVNMSAKDRLDLLMLSRRTMSEVAI 120
           QDLN+KKIYFLLQLPKI   N  PP+RIPRRVRSSGV+MSAKDRLDLLMLSRRTMSE+AI
Sbjct: 61  QDLNRKKIYFLLQLPKIAADNRPPPDRIPRRVRSSGVHMSAKDRLDLLMLSRRTMSEIAI 120

Query: 121 TRPSPVLATASSAEPRFHSGPMQVKMKIPRSQVAKLMEESRNEGEIAEKIINLYLKNEVN 180
           TRPS   AT SSA+PRFHSGPMQVKMKIPRSQVAKLMEES +EGEIAEKII +YLKNEVN
Sbjct: 121 TRPSTTSATDSSAQPRFHSGPMQVKMKIPRSQVAKLMEESASEGEIAEKIIKMYLKNEVN 180

Query: 181 SGGGGGHGDAVAGSGGVDAGRHPEPWKPSLVSSVRENSKVHRE 222
           +GGG         +G V+AG+HPE WKPSLVSSVRENSKVHRE
Sbjct: 181 TGGG--------SAGDVNAGQHPEHWKPSLVSSVRENSKVHRE 215

[Close]

BLAST of CmaCh04G022990 vs. NCBI nr
Match: gi|700195865|gb|KGN51042.1| (hypothetical protein Csa_5G418770 [Cucumis sativus])

HSP 1 Score: 351.3 bits (900), Expect = 1.3e-93
Identity = 188/223 (84.30%), Postives = 200/223 (89.69%), Query Frame = 1


Query: 1   MGNSIGGRRRVKVMKVDGEILKLKTPIRVSEVLKDYPDHVLMESEAVKHYGVKAKPLEPQ 60
           MGNSIGGR+RVKVMKVDGEILKLK PIRVSEVLKDYPDHVLMESEAVKHYGVKAKPLEPQ
Sbjct: 1   MGNSIGGRKRVKVMKVDGEILKLKLPIRVSEVLKDYPDHVLMESEAVKHYGVKAKPLEPQ 60

Query: 61  QDLNKKKIYFLLQLPKIT--NPEPPERIPRRVRSSGVNMSAKDRLDLLMLSRRTMSEVAI 120
           QDLN+KKIYFLLQLPKI   N  PP+RIPRRVRSSGV+MSAKDRLDLLMLSRRTMSE+AI
Sbjct: 61  QDLNRKKIYFLLQLPKIAADNRPPPDRIPRRVRSSGVHMSAKDRLDLLMLSRRTMSEIAI 120

Query: 121 TRPSPVLATASSAEPRFHSGPMQVKMKIPRSQVAKLMEESRNEGEIAEKIINLYLKNEVN 180
           TRPS   AT SSA+PRFHSGPMQVKMKIPRSQVAKLMEES +EGEIAEKII +YLKNEVN
Sbjct: 121 TRPSTTSATDSSAQPRFHSGPMQVKMKIPRSQVAKLMEESASEGEIAEKIIKMYLKNEVN 180

Query: 181 SGGGGGHGDAVAGSGGVDAGRHPEPWKPSLVSSVRENSKVHRE 222
           +GGG         +G V+AG+HPE WKPSLVSSVRENSKVHRE
Sbjct: 181 TGGG--------SAGDVNAGQHPEHWKPSLVSSVRENSKVHRE 215

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BLAST of CmaCh04G022990 vs. NCBI nr
Match: gi|590652162|ref|XP_007033077.1| (Plastid movement impaired 2 [Theobroma cacao])

HSP 1 Score: 220.3 bits (560), Expect = 3.4e-54
Identity = 122/222 (54.95%), Postives = 159/222 (71.62%), Query Frame = 1


Query: 1   MGNSIGGRRRVKVMKVDGEILKLKTPIRVSEVLKDYPDHVLMESEAVKHYGVKAKPLEPQ 60
           MGNS+GGR++ KVMK+DGE  KLKTP+R  +V+KDYP HVL++SEAVKH+G++AKPLEPQ
Sbjct: 1   MGNSMGGRKKAKVMKIDGETFKLKTPVRAWDVVKDYPGHVLLDSEAVKHFGIRAKPLEPQ 60

Query: 61  QDLNKKKIYFLLQLPKITNPEPPERIPRRVRSSGVNMSAKDRLDLLMLSRRTMSEVAITR 120
           QDL  KKIYFL++LPK     P E+ PRRVRS G++MSAKDRL+ LMLSRR++S++++ R
Sbjct: 61  QDLKPKKIYFLVELPKF----PEEKAPRRVRSGGIHMSAKDRLECLMLSRRSVSDLSMVR 120

Query: 121 PSPVLATASSAEPRFHSGPMQVKMKIPRSQVAKLMEESRNEGEIAEKIINLYLKNEVNSG 180
           PS  L +         SG M VKM++P+SQ+AKL+EESR+  E+AEKI++LY++N     
Sbjct: 121 PSSSLGSDGLGR---SSGGMTVKMRLPKSQMAKLVEESRDGVEVAEKILDLYVEN----- 180

Query: 181 GGGGHGDAVAGSGGVDAGRHPE-PWKPSLVSSVRENSKVHRE 222
                    AG G  D   H E PWKP L  S+ EN K  RE
Sbjct: 181 ---------AGGGDTDNQMHLEAPWKPGL-GSIGENFKAKRE 200

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BLAST of CmaCh04G022990 vs. NCBI nr
Match: gi|1009126577|ref|XP_015880231.1| (PREDICTED: uncharacterized protein At1g66480 [Ziziphus jujuba])

HSP 1 Score: 213.0 bits (541), Expect = 5.4e-52
Identity = 120/229 (52.40%), Postives = 168/229 (73.36%), Query Frame = 1


Query: 1   MGNSIGGRRRVKVMKVDGEILKLKTPIRVSEVLKDYPDHVLMESEAVKHYGVKAKPLEPQ 60
           MGNSIGGR++ KVMK++GE  KLKTPI+V +V+KDYP HVL++SEAVKH+G++AKP+EPQ
Sbjct: 1   MGNSIGGRKKAKVMKINGETFKLKTPIQVWDVVKDYPGHVLLDSEAVKHFGIRAKPMEPQ 60

Query: 61  QDLNKKKIYFLLQLPKITNPEPPERIPRRVRSSGVNMSAKDRLDLLMLSRRTMSEVAITR 120
           Q L  KKIYFL++LPK  + +  ++  RRVR SG+NMSAKDRL+ LMLSRR++S++++ R
Sbjct: 61  QQLRPKKIYFLVELPKFLDHDQDQKATRRVR-SGINMSAKDRLECLMLSRRSVSDLSMVR 120

Query: 121 PSPVLATASSAEPRFHSGPMQVKMKIPRSQVAKLMEESRNEGEIAEKIINLYLKNEVNSG 180
                  +SS +   +SGPM+VKM++P+SQVAKLMEES++  E+AEKII+LY++   N G
Sbjct: 121 -----KPSSSMDSGSNSGPMRVKMRLPKSQVAKLMEESKDGVEVAEKIISLYME---NGG 180

Query: 181 GGGGHGDAVAGSGGV-----DAGRHPEPWKPSLVSSVRENSKVHREHFS 225
           G  GH   + G  G+     DA R P P  P+ + S+ E+ K  ++  S
Sbjct: 181 GADGHMPPLEGGDGLLHRHSDARRKP-PRLPAGLGSIGEDCKADKKRVS 219

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BLAST of CmaCh04G022990 vs. NCBI nr
Match: gi|823122599|ref|XP_012471780.1| (PREDICTED: uncharacterized protein At1g66480 isoform X2 [Gossypium raimondii])

HSP 1 Score: 210.7 bits (535), Expect = 2.7e-51
Identity = 125/232 (53.88%), Postives = 158/232 (68.10%), Query Frame = 1


Query: 1   MGNSIGGRRRVKVMKVDGEILKLKTPIRVSEVLKDYPD-HVLMESEAVKHYGVKAKPLEP 60
           MGNSIGGR + KVMK+DGE +KLKTPIRV +VLKDYP  HVL++S+ VKHYG++AKPLEP
Sbjct: 1   MGNSIGGRNKAKVMKIDGETIKLKTPIRVWDVLKDYPTGHVLLDSQTVKHYGIRAKPLEP 60

Query: 61  QQDLNKKKIYFLLQLPKITNPEPPERIPRRVRSSGVNMSAKDRLDLLMLSRRTMSEVAIT 120
           Q+ L  KKIYFL++LPK+ + E   + PRRVRS G++MSAKDRL+ LMLSRRT+S++++ 
Sbjct: 61  QESLKPKKIYFLVELPKLADDE-VHKAPRRVRSGGIHMSAKDRLECLMLSRRTVSDLSMV 120

Query: 121 RPSPVLATASSAE----PRFHSGPMQVKMKIPRSQVAKLMEESRNEGEIAEKIINLYLKN 180
           RPS                   G M VKM++P+SQ+AKLMEES++  E+AEKI++LY  N
Sbjct: 121 RPSSTSMVPDGVRLGGGGTSGGGMMTVKMRLPKSQMAKLMEESKDGVEVAEKILDLYTGN 180

Query: 181 EVNSGGGGGHGDAVAGSGGVDAGR--HPE-PWKPSLVSSVRENSKVHREHFS 225
                          GSGG DAG   H E PWKP L  +V EN K  RE  S
Sbjct: 181 --------------GGSGGDDAGNRIHREAPWKPGL-GTVGENFKPKRERVS 216

The following BLAST results are available for this feature:

BLAST of CmaCh04G022990 vs. Swiss-Prot


Match Name	E-value	Identity	Description
Y1648_ARATH	1.2e-38	46.34	Uncharacterized protein At1g66480 OS=Arabidopsis thaliana GN=At1g66480 PE=2 SV=1	[more]

BLAST of CmaCh04G022990 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KRN5_CUCSA	8.8e-94	84.30	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G418770 PE=4 SV=1	[more]
A0A061EH62_THECC	2.3e-54	54.95	Plastid movement impaired 2 OS=Theobroma cacao GN=TCM_019256 PE=4 SV=1	[more]
A0A0D2PP13_GOSRA	1.9e-51	53.88	Uncharacterized protein OS=Gossypium raimondii GN=B456_001G086600 PE=4 SV=1	[more]
A0A0D2QMN0_GOSRA	4.1e-51	54.15	Uncharacterized protein OS=Gossypium raimondii GN=B456_001G086600 PE=4 SV=1	[more]
A0A0B0MQ13_GOSAR	9.2e-51	51.71	Uncharacterized protein OS=Gossypium arboreum GN=F383_25869 PE=4 SV=1	[more]

BLAST of CmaCh04G022990 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G66480.1	6.5e-40	46.34	plastid movement impaired 2	[more]
AT2G01340.1	2.2e-35	44.89	Encodes a protein whose expression is responsive to nematode infecti...	[more]
AT5G37840.1	4.8e-35	40.09	BEST Arabidopsis thaliana protein match is: plastid movement impaire...	[more]
AT1G71015.1	4.5e-33	45.09	unknown protein	[more]

BLAST of CmaCh04G022990 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449445092\|ref\|XP_004140307.1\|	1.3e-93	84.30	PREDICTED: uncharacterized protein At1g66480-like [Cucumis sativus]	[more]
gi\|700195865\|gb\|KGN51042.1\|	1.3e-93	84.30	hypothetical protein Csa_5G418770 [Cucumis sativus]	[more]
gi\|590652162\|ref\|XP_007033077.1\|	3.4e-54	54.95	Plastid movement impaired 2 [Theobroma cacao]	[more]
gi\|1009126577\|ref\|XP_015880231.1\|	5.4e-52	52.40	PREDICTED: uncharacterized protein At1g66480 [Ziziphus jujuba]	[more]
gi\|823122599\|ref\|XP_012471780.1\|	2.7e-51	53.88	PREDICTED: uncharacterized protein At1g66480 isoform X2 [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR025322	DUF4228_plant

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G022990.1	CmaCh04G022990.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025322	Protein of unknown function DUF4228, plant	PFAM	PF14009	DUF4228	coord: 1..209 score: 8.6
None	No IPR available	PANTHER	PTHR33148	FAMILY NOT NAMED	coord: 2..216 score: 2.1
None	No IPR available	PANTHER	PTHR33148:SF6	SUBFAMILY NOT NAMED	coord: 2..216 score: 2.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh04G022990	Cucsa.034830	Cucumber (Gy14) v1	cgycmaB0020
CmaCh04G022990	Cla019767	Watermelon (97103) v1	cmawmB672
CmaCh04G022990	Csa5G418770	Cucumber (Chinese Long) v2	cmacuB750
CmaCh04G022990	ClCG03G008730	Watermelon (Charleston Gray)	cmawcgB645
CmaCh04G022990	CSPI05G14920	Wild cucumber (PI 183967)	cmacpiB759
CmaCh04G022990	CmoCh04G024030	Cucurbita moschata (Rifu)	cmacmoB729
CmaCh04G022990	Lsi09G009350	Bottle gourd (USVL1VR-Ls)	cmalsiB622
CmaCh04G022990	Cp4.1LG01g20030	Cucurbita pepo (Zucchini)	cmacpeB721
CmaCh04G022990	CsaV3_5G024000	Cucumber (Chinese Long) v3	cmacucB0887
CmaCh04G022990	Cla97C03G059950	Watermelon (97103) v2	cmawmbB746
CmaCh04G022990	Bhi12G001074	Wax gourd	cmawgoB0827
CmaCh04G022990	CsGy5G014780	Cucumber (Gy14) v2	cgybcmaB676
CmaCh04G022990	Carg18264	Silver-seed gourd	carcmaB0738

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh04G022990	Silver-seed gourd	carcmaB1150
CmaCh04G022990	Cucurbita maxima (Rimu)	cmacmaB325
CmaCh04G022990	Cucurbita moschata (Rifu)	cmacmoB693
CmaCh04G022990	Melon (DHL92) v3.5.1	cmameB636
CmaCh04G022990	Cucurbita pepo (Zucchini)	cmacpeB705
CmaCh04G022990	Melon (DHL92) v3.6.1	cmamedB722