Csa5G418770 (gene) Cucumber (Chinese Long) v2
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AGAAATTATTGGGCTAAAAGGGAAAGAAACGAAAATTTAGAGAGAGAGCGGAAAAAAAATGGGGAATAGTATCGGGGGGAGAAAGAGAGTAAAGGTAATGAAAGTGGACGGAGAGATTCTGAAATTGAAATTACCCATTCGAGTTTCTGAAGTTTTGAAGGATTATCCCGATCATGTTCTTATGGAATCGGAAGCCGTTAAGCATTACGGCGTTAAGGCCAAGCCATTGGAGCCGCAACAGGATTTAAACAGGAAGAAGATTTATTTTCTATTACAGTTGCCCAAAATCGCCGCTGATAATCGTCCCCCGCCCGATCGGATTCCCAGAAGAGTCCGTTCCTCTGGCGTCCATATGTCCGCCAAGGACCGTCTCGACCTTCTCATGCTCTCCCGCCGGACTATGTCCGAGATTGCTATTACTAGGCCGTCTACCACCTCCGCGACGGACTCCTCTGCTCAGCCGCGCTTCCATAGCGGCCCGATGCAGGTTAAGATGAAGATTCCGAGATCGCAGGTCGCGAAATTGATGGAGGAGAGTGCGAGTGAAGGAGAAATCGCTGAGAAGATTATTAAAATGTATTTGAAGAACGAGGTCAATACTGGCGGCGGTAGTGCCGGTGATGTCAACGCCGGCCAACACCCGGAGCATTGGAAACCGAGCCTTGTTAGTAGCGTTCGGGAAAATTCAAAGGTTCATCGCGAGGTACGTTTCTTTCTTCCAAATTTTCGCTTCATTCATTTTACTTTTCTCAAATTACCATATTTACTAACTAATTTCAACAAAATTTGATCTAAGTGAACTAAATTTAAGATTTATGAAATATGTGATTGTTATTTTCATTAAAGTTATGGGTACGAACATTTAAAAATTTTATAATCTAGGATTAAAGGAAACAAAAAAAAAGAAAAAAGAATGATAGCTTAACAAGAAAACGAACAACTCAACAAACTGTGCGTGGGCTAATTGTTGGAATCTTAACAACCGAAAGTTATATTAAAATGAAAATTAGATGAATTAAAAATGATTGATTTGTTTGGAAGGTAATAAATTTGA ATGGGGAATAGTATCGGGGGGAGAAAGAGAGTAAAGGTAATGAAAGTGGACGGAGAGATTCTGAAATTGAAATTACCCATTCGAGTTTCTGAAGTTTTGAAGGATTATCCCGATCATGTTCTTATGGAATCGGAAGCCGTTAAGCATTACGGCGTTAAGGCCAAGCCATTGGAGCCGCAACAGGATTTAAACAGGAAGAAGATTTATTTTCTATTACAGTTGCCCAAAATCGCCGCTGATAATCGTCCCCCGCCCGATCGGATTCCCAGAAGAGTCCGTTCCTCTGGCGTCCATATGTCCGCCAAGGACCGTCTCGACCTTCTCATGCTCTCCCGCCGGACTATGTCCGAGATTGCTATTACTAGGCCGTCTACCACCTCCGCGACGGACTCCTCTGCTCAGCCGCGCTTCCATAGCGGCCCGATGCAGGTTAAGATGAAGATTCCGAGATCGCAGGTCGCGAAATTGATGGAGGAGAGTGCGAGTGAAGGAGAAATCGCTGAGAAGATTATTAAAATGTATTTGAAGAACGAGGTCAATACTGGCGGCGGTAGTGCCGGTGATGTCAACGCCGGCCAACACCCGGAGCATTGGAAACCGAGCCTTGTTAGTAGCGTTCGGGAAAATTCAAAGGTTCATCGCGAGGTACGTTTCTTTCTTCCAAATTTTCGCTTCATTCATTTTACTTTTCTCAAATTACCATATTTACTAACTAATTTCAACAAAATTTGA ATGGGGAATAGTATCGGGGGGAGAAAGAGAGTAAAGGTAATGAAAGTGGACGGAGAGATTCTGAAATTGAAATTACCCATTCGAGTTTCTGAAGTTTTGAAGGATTATCCCGATCATGTTCTTATGGAATCGGAAGCCGTTAAGCATTACGGCGTTAAGGCCAAGCCATTGGAGCCGCAACAGGATTTAAACAGGAAGAAGATTTATTTTCTATTACAGTTGCCCAAAATCGCCGCTGATAATCGTCCCCCGCCCGATCGGATTCCCAGAAGAGTCCGTTCCTCTGGCGTCCATATGTCCGCCAAGGACCGTCTCGACCTTCTCATGCTCTCCCGCCGGACTATGTCCGAGATTGCTATTACTAGGCCGTCTACCACCTCCGCGACGGACTCCTCTGCTCAGCCGCGCTTCCATAGCGGCCCGATGCAGGTTAAGATGAAGATTCCGAGATCGCAGGTCGCGAAATTGATGGAGGAGAGTGCGAGTGAAGGAGAAATCGCTGAGAAGATTATTAAAATGTATTTGAAGAACGAGGTCAATACTGGCGGCGGTAGTGCCGGTGATGTCAACGCCGGCCAACACCCGGAGCATTGGAAACCGAGCCTTGTTAGTAGCGTTCGGGAAAATTCAAAGGTTCATCGCGAGGTACGTTTCTTTCTTCCAAATTTTCGCTTCATTCATTTTACTTTTCTCAAATTACCATATTTACTAACTAATTTCAACAAAATTTGA MGNSIGGRKRVKVMKVDGEILKLKLPIRVSEVLKDYPDHVLMESEAVKHYGVKAKPLEPQQDLNRKKIYFLLQLPKIAADNRPPPDRIPRRVRSSGVHMSAKDRLDLLMLSRRTMSEIAITRPSTTSATDSSAQPRFHSGPMQVKMKIPRSQVAKLMEESASEGEIAEKIIKMYLKNEVNTGGGSAGDVNAGQHPEHWKPSLVSSVRENSKVHREVRFFLPNFRFIHFTFLKLPYLLTNFNKI*
BLAST of Csa5G418770 vs. Swiss-Prot
Match: Y1648_ARATH (Uncharacterized protein At1g66480 OS=Arabidopsis thaliana GN=At1g66480 PE=2 SV=1) HSP 1 Score: 166.8 bits (421), Expect = 3.0e-40 Identity = 89/191 (46.60%), Postives = 124/191 (64.92%), Query Frame = 1
BLAST of Csa5G418770 vs. TrEMBL
Match: A0A0A0KRN5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G418770 PE=4 SV=1) HSP 1 Score: 483.4 bits (1243), Expect = 1.6e-133 Identity = 243/243 (100.00%), Postives = 243/243 (100.00%), Query Frame = 1
BLAST of Csa5G418770 vs. TrEMBL
Match: A0A061EH62_THECC (Plastid movement impaired 2 OS=Theobroma cacao GN=TCM_019256 PE=4 SV=1) HSP 1 Score: 226.1 bits (575), Expect = 4.6e-56 Identity = 122/223 (54.71%), Postives = 162/223 (72.65%), Query Frame = 1
BLAST of Csa5G418770 vs. TrEMBL
Match: A0A0D2PP13_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G086600 PE=4 SV=1) HSP 1 Score: 220.3 bits (560), Expect = 2.5e-54 Identity = 125/229 (54.59%), Postives = 159/229 (69.43%), Query Frame = 1
BLAST of Csa5G418770 vs. TrEMBL
Match: A0A0D2QMN0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G086600 PE=4 SV=1) HSP 1 Score: 219.5 bits (558), Expect = 4.3e-54 Identity = 126/230 (54.78%), Postives = 160/230 (69.57%), Query Frame = 1
BLAST of Csa5G418770 vs. TrEMBL
Match: A0A0B0MQ13_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_25869 PE=4 SV=1) HSP 1 Score: 214.5 bits (545), Expect = 1.4e-52 Identity = 122/226 (53.98%), Postives = 158/226 (69.91%), Query Frame = 1
BLAST of Csa5G418770 vs. TAIR10
Match: AT1G66480.1 (AT1G66480.1 plastid movement impaired 2) HSP 1 Score: 166.8 bits (421), Expect = 1.7e-41 Identity = 89/191 (46.60%), Postives = 124/191 (64.92%), Query Frame = 1
BLAST of Csa5G418770 vs. TAIR10
Match: AT2G01340.1 (AT2G01340.1 Encodes a protein whose expression is responsive to nematode infection.) HSP 1 Score: 156.4 bits (394), Expect = 2.3e-38 Identity = 79/178 (44.38%), Postives = 119/178 (66.85%), Query Frame = 1
BLAST of Csa5G418770 vs. TAIR10
Match: AT5G37840.1 (AT5G37840.1 BEST Arabidopsis thaliana protein match is: plastid movement impaired 2 (TAIR:AT1G66480.1)) HSP 1 Score: 149.4 bits (376), Expect = 2.8e-36 Identity = 82/189 (43.39%), Postives = 113/189 (59.79%), Query Frame = 1
BLAST of Csa5G418770 vs. TAIR10
Match: AT1G71015.1 (AT1G71015.1 unknown protein) HSP 1 Score: 141.0 bits (354), Expect = 9.9e-34 Identity = 76/175 (43.43%), Postives = 111/175 (63.43%), Query Frame = 1
BLAST of Csa5G418770 vs. NCBI nr
Match: gi|700195865|gb|KGN51042.1| (hypothetical protein Csa_5G418770 [Cucumis sativus]) HSP 1 Score: 483.4 bits (1243), Expect = 2.3e-133 Identity = 243/243 (100.00%), Postives = 243/243 (100.00%), Query Frame = 1
BLAST of Csa5G418770 vs. NCBI nr
Match: gi|449445092|ref|XP_004140307.1| (PREDICTED: uncharacterized protein At1g66480-like [Cucumis sativus]) HSP 1 Score: 427.9 bits (1099), Expect = 1.2e-116 Identity = 219/222 (98.65%), Postives = 219/222 (98.65%), Query Frame = 1
BLAST of Csa5G418770 vs. NCBI nr
Match: gi|590652162|ref|XP_007033077.1| (Plastid movement impaired 2 [Theobroma cacao]) HSP 1 Score: 226.1 bits (575), Expect = 6.7e-56 Identity = 122/223 (54.71%), Postives = 162/223 (72.65%), Query Frame = 1
BLAST of Csa5G418770 vs. NCBI nr
Match: gi|823122599|ref|XP_012471780.1| (PREDICTED: uncharacterized protein At1g66480 isoform X2 [Gossypium raimondii]) HSP 1 Score: 220.3 bits (560), Expect = 3.7e-54 Identity = 125/229 (54.59%), Postives = 159/229 (69.43%), Query Frame = 1
BLAST of Csa5G418770 vs. NCBI nr
Match: gi|823122597|ref|XP_012471773.1| (PREDICTED: uncharacterized protein At1g66480 isoform X1 [Gossypium raimondii]) HSP 1 Score: 219.5 bits (558), Expect = 6.2e-54 Identity = 126/230 (54.78%), Postives = 160/230 (69.57%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
This gene is associated with the following unigenes:
The following mRNA feature(s) are a part of this gene:
The following transcribed_cluster feature(s) are associated with this gene:
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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