CmoCh04G024030 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G024030
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Plastid movement impaired 2
Location	Cmo_Chr04 : 17900637 .. 17901347 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGAACAGTATTGGGGGAAGACGGAGAGTAAAGGTAATGAAAGTGGACGGAGAGATTCTGAAATTGAAGACGCCGATTCGAGTTTCAGAGGTTTTGAAAGATTATCCGGATCATGTTTTGATGGAATCGGAGGCTGTTAAGCATTACGGAGTGAAGGCCAAGCCATTAGAGCCGCAACAGGATTTGAACAAGAAGAAGATTTATTTTCTTCTACAGTTACCGAAGATCTCCAATCCGGAACCTCCGGAGCGGATTCCGAGGCGAGTTCGTTCTTCTGGCGTCAATATGTCCGCCAAGGATCGTCTCGACCTTCTCATGCTTTCGCGGAGGACGATGTCGGAGGTCGCTATTACTAGACCGTCTCCGGTACTGGCTGCTGCTTCCTCTGCTGAGCCGCGGTTCCATAGCGGCCCGATGCAGGTTAAAATGAAGATTCCGAGATCGCAGGTCGCTAAATTGATGGAGGAGAGTCGGAATGAAGGAGAAATCGCGGAGAAGATTATAAATCTTTATTTGAAGAACGAGGTCAATAGCGGCGGCGGCGGCGGCGGTGGCCATGGCGATGCCGTTGCCGGTTCCGGTGGCTTCGATGCCGGCCGTCATCCGGAGCCGTGGAAACCCAGCCTTGTTAGTAGCGTTAGGGAAAATTCAAAGGTTCATCGCGAGGTATGTTCGTCGTTCAAATTTTTCGCTCTGACAGTCCATTAA

mRNA sequence

ATGGGGAACAGTATTGGGGGAAGACGGAGAGTAAAGGTAATGAAAGTGGACGGAGAGATTCTGAAATTGAAGACGCCGATTCGAGTTTCAGAGGTTTTGAAAGATTATCCGGATCATGTTTTGATGGAATCGGAGGCTGTTAAGCATTACGGAGTGAAGGCCAAGCCATTAGAGCCGCAACAGGATTTGAACAAGAAGAAGATTTATTTTCTTCTACAGTTACCGAAGATCTCCAATCCGGAACCTCCGGAGCGGATTCCGAGGCGAGTTCGTTCTTCTGGCGTCAATATGTCCGCCAAGGATCGTCTCGACCTTCTCATGCTTTCGCGGAGGACGATGTCGGAGGTCGCTATTACTAGACCGTCTCCGGTACTGGCTGCTGCTTCCTCTGCTGAGCCGCGGTTCCATAGCGGCCCGATGCAGGTTAAAATGAAGATTCCGAGATCGCAGGTCGCTAAATTGATGGAGGAGAGTCGGAATGAAGGAGAAATCGCGGAGAAGATTATAAATCTTTATTTGAAGAACGAGGTCAATAGCGGCGGCGGCGGCGGCGGTGGCCATGGCGATGCCGTTGCCGGTTCCGGTGGCTTCGATGCCGGCCGTCATCCGGAGCCGTGGAAACCCAGCCTTGTTAGTAGCGTTAGGGAAAATTCAAAGGTTCATCGCGAGGTATGTTCGTCGTTCAAATTTTTCGCTCTGACAGTCCATTAA

Coding sequence (CDS)

ATGGGGAACAGTATTGGGGGAAGACGGAGAGTAAAGGTAATGAAAGTGGACGGAGAGATTCTGAAATTGAAGACGCCGATTCGAGTTTCAGAGGTTTTGAAAGATTATCCGGATCATGTTTTGATGGAATCGGAGGCTGTTAAGCATTACGGAGTGAAGGCCAAGCCATTAGAGCCGCAACAGGATTTGAACAAGAAGAAGATTTATTTTCTTCTACAGTTACCGAAGATCTCCAATCCGGAACCTCCGGAGCGGATTCCGAGGCGAGTTCGTTCTTCTGGCGTCAATATGTCCGCCAAGGATCGTCTCGACCTTCTCATGCTTTCGCGGAGGACGATGTCGGAGGTCGCTATTACTAGACCGTCTCCGGTACTGGCTGCTGCTTCCTCTGCTGAGCCGCGGTTCCATAGCGGCCCGATGCAGGTTAAAATGAAGATTCCGAGATCGCAGGTCGCTAAATTGATGGAGGAGAGTCGGAATGAAGGAGAAATCGCGGAGAAGATTATAAATCTTTATTTGAAGAACGAGGTCAATAGCGGCGGCGGCGGCGGCGGTGGCCATGGCGATGCCGTTGCCGGTTCCGGTGGCTTCGATGCCGGCCGTCATCCGGAGCCGTGGAAACCCAGCCTTGTTAGTAGCGTTAGGGAAAATTCAAAGGTTCATCGCGAGGTATGTTCGTCGTTCAAATTTTTCGCTCTGACAGTCCATTAA

Homology

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BLAST of CmoCh04G024030 vs. Swiss-Prot
Match: Y1648_ARATH (Uncharacterized protein At1g66480 OS=Arabidopsis thaliana GN=At1g66480 PE=2 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 3.2e-39
Identity = 98/209 (46.89%), Postives = 133/209 (63.64%), Query Frame = 1


Query: 1   MGNSIG-GRRRVKVMKVDGEILKLKTPIRVSEVLKDYPDHVLMESEAVKHYGVKAKPLEP 60
           MGNSI   R+R KVMK+DGE  ++KTP+   EV  DYP +VL++S+AVKH+GV++KPLEP
Sbjct: 1   MGNSITVKRKRAKVMKIDGETFRIKTPVTAREVTADYPGYVLLDSQAVKHFGVRSKPLEP 60

Query: 61  QQDLNKKKIYFLLQLPKISNPEPPE--------RIPRRVRSSGVNMSAKDRLDLLMLSRR 120
            Q L  KK YFL++LPK+    PPE        ++P R   SG+++ AK+RLD+LMLSRR
Sbjct: 61  NQTLKPKKTYFLVELPKL----PPETTAVDTENKLPYRRVMSGIHVGAKERLDMLMLSRR 120

Query: 121 TMSEVAITRPSPVLAAASSAEPRFHSGPMQVKMKIPRSQVAKLMEESRNEGE-IAEKIIN 180
           T+S+V I R            P    G   V++++PRSQ+ KLMEE+ N+   IAEKI+ 
Sbjct: 121 TVSDVTIGRSD----GGDGFGPELGPGHTSVRLRLPRSQITKLMEENNNDASAIAEKILG 180

Query: 181 LYLKNEVNSGGGGGGGHGDAVAGSGGFDA 200
           +Y++     GGG GG  G    GSG   A
Sbjct: 181 IYMERSGELGGGRGGVDGRRELGSGEIKA 201

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BLAST of CmoCh04G024030 vs. TrEMBL
Match: A0A0A0KRN5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G418770 PE=4 SV=1)

HSP 1 Score: 349.0 bits (894), Expect = 4.6e-93
Identity = 190/239 (79.50%), Postives = 205/239 (85.77%), Query Frame = 1


Query: 1   MGNSIGGRRRVKVMKVDGEILKLKTPIRVSEVLKDYPDHVLMESEAVKHYGVKAKPLEPQ 60
           MGNSIGGR+RVKVMKVDGEILKLK PIRVSEVLKDYPDHVLMESEAVKHYGVKAKPLEPQ
Sbjct: 1   MGNSIGGRKRVKVMKVDGEILKLKLPIRVSEVLKDYPDHVLMESEAVKHYGVKAKPLEPQ 60

Query: 61  QDLNKKKIYFLLQLPKIS--NPEPPERIPRRVRSSGVNMSAKDRLDLLMLSRRTMSEVAI 120
           QDLN+KKIYFLLQLPKI+  N  PP+RIPRRVRSSGV+MSAKDRLDLLMLSRRTMSE+AI
Sbjct: 61  QDLNRKKIYFLLQLPKIAADNRPPPDRIPRRVRSSGVHMSAKDRLDLLMLSRRTMSEIAI 120

Query: 121 TRPSPVLAAASSAEPRFHSGPMQVKMKIPRSQVAKLMEESRNEGEIAEKIINLYLKNEVN 180
           TRPS   A  SSA+PRFHSGPMQVKMKIPRSQVAKLMEES +EGEIAEKII +YLKNEVN
Sbjct: 121 TRPSTTSATDSSAQPRFHSGPMQVKMKIPRSQVAKLMEESASEGEIAEKIIKMYLKNEVN 180

Query: 181 SGGGGGGGHGDAVAGSGGFDAGRHPEPWKPSLVSSVRENSKVHREV---CSSFKFFALT 235
           +GGG           +G  +AG+HPE WKPSLVSSVRENSKVHREV     +F+F   T
Sbjct: 181 TGGG----------SAGDVNAGQHPEHWKPSLVSSVRENSKVHREVRFFLPNFRFIHFT 229

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BLAST of CmoCh04G024030 vs. TrEMBL
Match: A0A061EH62_THECC (Plastid movement impaired 2 OS=Theobroma cacao GN=TCM_019256 PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 4.2e-54
Identity = 124/229 (54.15%), Postives = 161/229 (70.31%), Query Frame = 1


Query: 1   MGNSIGGRRRVKVMKVDGEILKLKTPIRVSEVLKDYPDHVLMESEAVKHYGVKAKPLEPQ 60
           MGNS+GGR++ KVMK+DGE  KLKTP+R  +V+KDYP HVL++SEAVKH+G++AKPLEPQ
Sbjct: 1   MGNSMGGRKKAKVMKIDGETFKLKTPVRAWDVVKDYPGHVLLDSEAVKHFGIRAKPLEPQ 60

Query: 61  QDLNKKKIYFLLQLPKISNPEPPERIPRRVRSSGVNMSAKDRLDLLMLSRRTMSEVAITR 120
           QDL  KKIYFL++LPK     P E+ PRRVRS G++MSAKDRL+ LMLSRR++S++++ R
Sbjct: 61  QDLKPKKIYFLVELPKF----PEEKAPRRVRSGGIHMSAKDRLECLMLSRRSVSDLSMVR 120

Query: 121 PSPVLAAASSAEPRFHSGPMQVKMKIPRSQVAKLMEESRNEGEIAEKIINLYLKNEVNSG 180
           PS  L +         SG M VKM++P+SQ+AKL+EESR+  E+AEKI++LY++N     
Sbjct: 121 PSSSLGSDGLGR---SSGGMTVKMRLPKSQMAKLVEESRDGVEVAEKILDLYVEN----- 180

Query: 181 GGGGGGHGDAVAGSGGFDAGRHPE-PWKPSLVSSVRENSKVHREVCSSF 229
                      AG G  D   H E PWKP L  S+ EN K  RE   SF
Sbjct: 181 -----------AGGGDTDNQMHLEAPWKPGL-GSIGENFKAKREKRVSF 205

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BLAST of CmoCh04G024030 vs. TrEMBL
Match: A0A0D2QMN0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G086600 PE=4 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 2.5e-51
Identity = 126/236 (53.39%), Postives = 160/236 (67.80%), Query Frame = 1


Query: 1   MGNSIGGRRRVKVMKVDGEILKLKTPIRVSEVLKDYPD-HVLMESEAVKHYGVKAKPLEP 60
           MGNSIGGR + KVMK+DGE +KLKTPIRV +VLKDYP  HVL++S+ VKHYG++AKPLEP
Sbjct: 1   MGNSIGGRNKAKVMKIDGETIKLKTPIRVWDVLKDYPTGHVLLDSQTVKHYGIRAKPLEP 60

Query: 61  QQDLNKKKIYFLLQLPKISNPEPPERIPRRVRSSGVNMSAKDRLDLLMLSRRTMSEVAIT 120
           Q+ L  KKIYFL++LPK+++ E   + PRRVRS G++MSAKDRL+ LMLSRRT+S++++ 
Sbjct: 61  QESLKPKKIYFLVELPKLADDE-VHKAPRRVRSGGIHMSAKDRLECLMLSRRTVSDLSMV 120

Query: 121 RPSPVLAAASSAE----PRFHSGPMQVKMKIPRSQVAKLMEESRNEGEIAEKIINLYLKN 180
           RPS                   G M VKM++P+SQ+AKLMEES++  E+AEKI++LY  N
Sbjct: 121 RPSSTSMVPDGVRLGGGGTSGGGMMTVKMRLPKSQMAKLMEESKDGVEVAEKILDLYTGN 180

Query: 181 EVNSGGGGGGGHGDAVAGSGGFDAGR--HPE-PWKPSLVSSVRENSKVHREVCSSF 229
                            GSGG DAG   H E PWKP L  +V EN K  RE   SF
Sbjct: 181 ----------------GGSGGDDAGNRIHREAPWKPGL-GTVGENFKPKREKRVSF 218

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BLAST of CmoCh04G024030 vs. TrEMBL
Match: A0A0D2PP13_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G086600 PE=4 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 5.7e-51
Identity = 124/231 (53.68%), Postives = 158/231 (68.40%), Query Frame = 1


Query: 1   MGNSIGGRRRVKVMKVDGEILKLKTPIRVSEVLKDYPD-HVLMESEAVKHYGVKAKPLEP 60
           MGNSIGGR + KVMK+DGE +KLKTPIRV +VLKDYP  HVL++S+ VKHYG++AKPLEP
Sbjct: 1   MGNSIGGRNKAKVMKIDGETIKLKTPIRVWDVLKDYPTGHVLLDSQTVKHYGIRAKPLEP 60

Query: 61  QQDLNKKKIYFLLQLPKISNPEPPERIPRRVRSSGVNMSAKDRLDLLMLSRRTMSEVAIT 120
           Q+ L  KKIYFL++LPK+++ E   + PRRVRS G++MSAKDRL+ LMLSRRT+S++++ 
Sbjct: 61  QESLKPKKIYFLVELPKLADDE-VHKAPRRVRSGGIHMSAKDRLECLMLSRRTVSDLSMV 120

Query: 121 RPSPVLAAASSAE----PRFHSGPMQVKMKIPRSQVAKLMEESRNEGEIAEKIINLYLKN 180
           RPS                   G M VKM++P+SQ+AKLMEES++  E+AEKI++LY  N
Sbjct: 121 RPSSTSMVPDGVRLGGGGTSGGGMMTVKMRLPKSQMAKLMEESKDGVEVAEKILDLYTGN 180

Query: 181 EVNSGGGGGGGHGDAVAGSGGFDAGR--HPE-PWKPSLVSSVRENSKVHRE 224
                            GSGG DAG   H E PWKP L  +V EN K  RE
Sbjct: 181 ----------------GGSGGDDAGNRIHREAPWKPGL-GTVGENFKPKRE 213

[Close]

BLAST of CmoCh04G024030 vs. TrEMBL
Match: A0A0B0MQ13_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_25869 PE=4 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 2.8e-50
Identity = 122/234 (52.14%), Postives = 160/234 (68.38%), Query Frame = 1


Query: 1   MGNSIGGRRRVKVMKVDGEILKLKTPIRVSEVLKDYPD-HVLMESEAVKHYGVKAKPLEP 60
           MGNSIGGR + KVMK+DGE +KLKTP+RV +VLKDYP  HVL++S+ VKHYG++AKPLEP
Sbjct: 1   MGNSIGGRNKAKVMKIDGETIKLKTPVRVWDVLKDYPTGHVLLDSQTVKHYGIRAKPLEP 60

Query: 61  QQDLNKKKIYFLLQLPKISNPEPPERIPRRVRSSGVNMSAKDRLDLLMLSRRTMSEVAIT 120
           Q+ L  KKIYFL++LPK+++ E   + PRRVRS G++MSAKDRL+ LMLSRRT+S++++ 
Sbjct: 61  QESLKPKKIYFLVELPKLADDE-VHKAPRRVRSGGIHMSAKDRLECLMLSRRTVSDLSMV 120

Query: 121 RPSP-------VLAAASSAEPRFHSGPMQVKMKIPRSQVAKLMEESRNEGEIAEKIINLY 180
           +PS        V             G M VKM++P+SQ+AKL+EES++  E+AEKI++LY
Sbjct: 121 QPSSTSIVSDGVRLGGGGGGGTSGGGMMTVKMRLPKSQMAKLVEESKDGVEVAEKILDLY 180

Query: 181 LKNEVNSGGGGGGGHGDAVAGSGGFDAGR--HPE-PWKPSLVSSVRENSKVHRE 224
           + N                 GSGG DAG   H E PWKP L  +V EN K  RE
Sbjct: 181 IGN----------------GGSGGDDAGNRIHREAPWKPGL-GTVGENFKPKRE 216

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BLAST of CmoCh04G024030 vs. TAIR10
Match: AT1G66480.1 (AT1G66480.1 plastid movement impaired 2)

HSP 1 Score: 163.3 bits (412), Expect = 1.8e-40
Identity = 98/209 (46.89%), Postives = 133/209 (63.64%), Query Frame = 1


Query: 1   MGNSIG-GRRRVKVMKVDGEILKLKTPIRVSEVLKDYPDHVLMESEAVKHYGVKAKPLEP 60
           MGNSI   R+R KVMK+DGE  ++KTP+   EV  DYP +VL++S+AVKH+GV++KPLEP
Sbjct: 1   MGNSITVKRKRAKVMKIDGETFRIKTPVTAREVTADYPGYVLLDSQAVKHFGVRSKPLEP 60

Query: 61  QQDLNKKKIYFLLQLPKISNPEPPE--------RIPRRVRSSGVNMSAKDRLDLLMLSRR 120
            Q L  KK YFL++LPK+    PPE        ++P R   SG+++ AK+RLD+LMLSRR
Sbjct: 61  NQTLKPKKTYFLVELPKL----PPETTAVDTENKLPYRRVMSGIHVGAKERLDMLMLSRR 120

Query: 121 TMSEVAITRPSPVLAAASSAEPRFHSGPMQVKMKIPRSQVAKLMEESRNEGE-IAEKIIN 180
           T+S+V I R            P    G   V++++PRSQ+ KLMEE+ N+   IAEKI+ 
Sbjct: 121 TVSDVTIGRSD----GGDGFGPELGPGHTSVRLRLPRSQITKLMEENNNDASAIAEKILG 180

Query: 181 LYLKNEVNSGGGGGGGHGDAVAGSGGFDA 200
           +Y++     GGG GG  G    GSG   A
Sbjct: 181 IYMERSGELGGGRGGVDGRRELGSGEIKA 201

[Close]

BLAST of CmoCh04G024030 vs. TAIR10
Match: AT2G01340.1 (AT2G01340.1 Encodes a protein whose expression is responsive to nematode infection.)

HSP 1 Score: 144.4 bits (363), Expect = 8.7e-35
Identity = 78/176 (44.32%), Postives = 118/176 (67.05%), Query Frame = 1


Query: 1   MGNSIGGRRRVKVMKVDGEILKLKTPIRVSEVLKDYPDHVLMESEAVKHYGVKAKPLEPQ 60
           MGNS+GG++  KVMK+DGE  KLKTP+   EVLKD+P HVL++SE+VKHYG +AKPLE +
Sbjct: 1   MGNSLGGKKTTKVMKIDGETFKLKTPVTAEEVLKDFPGHVLLDSESVKHYGARAKPLEAK 60

Query: 61  QDLNKKKIYFLLQLPKISNPEPPERIPRRVRSSGVNMSAKDRLDLLMLSRRTMSEVAITR 120
           Q L  K++YF+++  K       E  PRRVR SG+++SAK+RL+ LML+RR+ S+++I +
Sbjct: 61  QRLEAKRLYFVVEPVK-------ECPPRRVR-SGIHVSAKERLESLMLARRSSSDLSILK 120

Query: 121 PSPVLAAASSAEPRFHSGPMQVKMKIPRSQVAKLMEESRNEGEIAEKIINLYLKNE 177
           P                   +VK++IP++++ KL++E   E E  +KI  L++  +
Sbjct: 121 P-----PGGWTTEEEEGAVRRVKVRIPKAELEKLVKEGATEAEATQKIAALFMAKQ 163

[Close]

BLAST of CmoCh04G024030 vs. TAIR10
Match: AT5G37840.1 (AT5G37840.1 BEST Arabidopsis thaliana protein match is: plastid movement impaired 2 (TAIR:AT1G66480.1))

HSP 1 Score: 141.0 bits (354), Expect = 9.6e-34
Identity = 88/193 (45.60%), Postives = 125/193 (64.77%), Query Frame = 1


Query: 1   MGNSIGGRR-RVKVMKVDGEILKLKTPIRVSEVLKDYPDHVLMESEAVKHYGVKAKPLEP 60
           MGN+I  RR +VKVMK+DG+I +LKTP+  S+  K+YP  VL++SE VK  GV+AKPLEP
Sbjct: 1   MGNTIMVRRNKVKVMKIDGDIFRLKTPVTASDATKEYPGFVLLDSETVKRLGVRAKPLEP 60

Query: 61  QQDLNKKKIYFLLQLPKISNPEPPERIP-RRVRSSGVNMSAKDRLDLLMLSRRTMSEVAI 120
            Q L     YFL+ LP +   +   ++P RRV S  +++ AK+RL++LMLSRRT+S+V  
Sbjct: 61  NQILKPNHTYFLVDLPPV---DKRNKLPYRRVMSGNIHVGAKERLEMLMLSRRTVSDVGA 120

Query: 121 TRPSPVLAAASSAEPRFHSGPMQVKMKIPRSQVAKLMEESRNEGEIAEKIINLYLKNEVN 180
            R   V        P    G  +V++++PRSQ+ KLMEES +  E+A KII+ Y++   +
Sbjct: 121 ARSDVV-----GDGPEL--GHTRVRLRLPRSQITKLMEESHDASEVAAKIISAYME---S 180

Query: 181 SGGGGGGGHGDAV 192
           SGG  GG   D +
Sbjct: 181 SGGIQGGRDNDGL 180

[Close]

BLAST of CmoCh04G024030 vs. TAIR10
Match: AT1G71015.1 (AT1G71015.1 unknown protein)

HSP 1 Score: 136.7 bits (343), Expect = 1.8e-32
Identity = 77/173 (44.51%), Postives = 115/173 (66.47%), Query Frame = 1


Query: 1   MGNSIGGRRRVKVMKVDGEILKLKTPIRVSEVLKDYPDHVLMESEAVKHYGVKAKPLEPQ 60
           MGNS+G ++   +M ++GE  KLKTP+    V+KD+P HVL+ESEAVK  G++AKPLEP 
Sbjct: 1   MGNSLGTKKTATIMNINGESFKLKTPVEAGTVVKDFPGHVLLESEAVKRLGIRAKPLEPH 60

Query: 61  QDLNKKKIYFLLQLPKISNPEPPERIPRRVRSSGVNMSAKDRLDLLMLSRRTMSEVAITR 120
           Q+L  K+IYF+++LP+       ER PRRVR SG+ MSAK+RL+ L LSRR+ S++++ +
Sbjct: 61  QNLESKRIYFMVELPRTWK----ERTPRRVR-SGIQMSAKERLENLKLSRRSSSDLSVMK 120

Query: 121 PSPVLAAASSAEPRFHSGPMQVKMKIPRSQVAKLMEESRNEGEIAEKIINLYL 174
               +    + E R  S    VK+K+P+ ++ KL +ES +  + + KI  L L
Sbjct: 121 KKTEV----NDEEREVS---SVKLKLPKWKIEKLRKESESGSDFSNKITQLCL 161

[Close]

BLAST of CmoCh04G024030 vs. NCBI nr
Match: gi|700195865|gb|KGN51042.1| (hypothetical protein Csa_5G418770 [Cucumis sativus])

HSP 1 Score: 349.0 bits (894), Expect = 6.6e-93
Identity = 190/239 (79.50%), Postives = 205/239 (85.77%), Query Frame = 1


Query: 1   MGNSIGGRRRVKVMKVDGEILKLKTPIRVSEVLKDYPDHVLMESEAVKHYGVKAKPLEPQ 60
           MGNSIGGR+RVKVMKVDGEILKLK PIRVSEVLKDYPDHVLMESEAVKHYGVKAKPLEPQ
Sbjct: 1   MGNSIGGRKRVKVMKVDGEILKLKLPIRVSEVLKDYPDHVLMESEAVKHYGVKAKPLEPQ 60

Query: 61  QDLNKKKIYFLLQLPKIS--NPEPPERIPRRVRSSGVNMSAKDRLDLLMLSRRTMSEVAI 120
           QDLN+KKIYFLLQLPKI+  N  PP+RIPRRVRSSGV+MSAKDRLDLLMLSRRTMSE+AI
Sbjct: 61  QDLNRKKIYFLLQLPKIAADNRPPPDRIPRRVRSSGVHMSAKDRLDLLMLSRRTMSEIAI 120

Query: 121 TRPSPVLAAASSAEPRFHSGPMQVKMKIPRSQVAKLMEESRNEGEIAEKIINLYLKNEVN 180
           TRPS   A  SSA+PRFHSGPMQVKMKIPRSQVAKLMEES +EGEIAEKII +YLKNEVN
Sbjct: 121 TRPSTTSATDSSAQPRFHSGPMQVKMKIPRSQVAKLMEESASEGEIAEKIIKMYLKNEVN 180

Query: 181 SGGGGGGGHGDAVAGSGGFDAGRHPEPWKPSLVSSVRENSKVHREV---CSSFKFFALT 235
           +GGG           +G  +AG+HPE WKPSLVSSVRENSKVHREV     +F+F   T
Sbjct: 181 TGGG----------SAGDVNAGQHPEHWKPSLVSSVRENSKVHREVRFFLPNFRFIHFT 229

[Close]

BLAST of CmoCh04G024030 vs. NCBI nr
Match: gi|449445092|ref|XP_004140307.1| (PREDICTED: uncharacterized protein At1g66480-like [Cucumis sativus])

HSP 1 Score: 347.8 bits (891), Expect = 1.5e-92
Identity = 188/230 (81.74%), Postives = 201/230 (87.39%), Query Frame = 1


Query: 1   MGNSIGGRRRVKVMKVDGEILKLKTPIRVSEVLKDYPDHVLMESEAVKHYGVKAKPLEPQ 60
           MGNSIGGR+RVKVMKVDGEILKLK PIRVSEVLKDYPDHVLMESEAVKHYGVKAKPLEPQ
Sbjct: 1   MGNSIGGRKRVKVMKVDGEILKLKLPIRVSEVLKDYPDHVLMESEAVKHYGVKAKPLEPQ 60

Query: 61  QDLNKKKIYFLLQLPKIS--NPEPPERIPRRVRSSGVNMSAKDRLDLLMLSRRTMSEVAI 120
           QDLN+KKIYFLLQLPKI+  N  PP+RIPRRVRSSGV+MSAKDRLDLLMLSRRTMSE+AI
Sbjct: 61  QDLNRKKIYFLLQLPKIAADNRPPPDRIPRRVRSSGVHMSAKDRLDLLMLSRRTMSEIAI 120

Query: 121 TRPSPVLAAASSAEPRFHSGPMQVKMKIPRSQVAKLMEESRNEGEIAEKIINLYLKNEVN 180
           TRPS   A  SSA+PRFHSGPMQVKMKIPRSQVAKLMEES +EGEIAEKII +YLKNEVN
Sbjct: 121 TRPSTTSATDSSAQPRFHSGPMQVKMKIPRSQVAKLMEESASEGEIAEKIIKMYLKNEVN 180

Query: 181 SGGGGGGGHGDAVAGSGGFDAGRHPEPWKPSLVSSVRENSKVHREVCSSF 229
           +GGG           +G  +AG+HPE WKPSLVSSVRENSKVHRE   SF
Sbjct: 181 TGGG----------SAGDVNAGQHPEHWKPSLVSSVRENSKVHREKRVSF 220

[Close]

BLAST of CmoCh04G024030 vs. NCBI nr
Match: gi|590652162|ref|XP_007033077.1| (Plastid movement impaired 2 [Theobroma cacao])

HSP 1 Score: 219.5 bits (558), Expect = 6.0e-54
Identity = 124/229 (54.15%), Postives = 161/229 (70.31%), Query Frame = 1


Query: 1   MGNSIGGRRRVKVMKVDGEILKLKTPIRVSEVLKDYPDHVLMESEAVKHYGVKAKPLEPQ 60
           MGNS+GGR++ KVMK+DGE  KLKTP+R  +V+KDYP HVL++SEAVKH+G++AKPLEPQ
Sbjct: 1   MGNSMGGRKKAKVMKIDGETFKLKTPVRAWDVVKDYPGHVLLDSEAVKHFGIRAKPLEPQ 60

Query: 61  QDLNKKKIYFLLQLPKISNPEPPERIPRRVRSSGVNMSAKDRLDLLMLSRRTMSEVAITR 120
           QDL  KKIYFL++LPK     P E+ PRRVRS G++MSAKDRL+ LMLSRR++S++++ R
Sbjct: 61  QDLKPKKIYFLVELPKF----PEEKAPRRVRSGGIHMSAKDRLECLMLSRRSVSDLSMVR 120

Query: 121 PSPVLAAASSAEPRFHSGPMQVKMKIPRSQVAKLMEESRNEGEIAEKIINLYLKNEVNSG 180
           PS  L +         SG M VKM++P+SQ+AKL+EESR+  E+AEKI++LY++N     
Sbjct: 121 PSSSLGSDGLGR---SSGGMTVKMRLPKSQMAKLVEESRDGVEVAEKILDLYVEN----- 180

Query: 181 GGGGGGHGDAVAGSGGFDAGRHPE-PWKPSLVSSVRENSKVHREVCSSF 229
                      AG G  D   H E PWKP L  S+ EN K  RE   SF
Sbjct: 181 -----------AGGGDTDNQMHLEAPWKPGL-GSIGENFKAKREKRVSF 205

[Close]

BLAST of CmoCh04G024030 vs. NCBI nr
Match: gi|1009126577|ref|XP_015880231.1| (PREDICTED: uncharacterized protein At1g66480 [Ziziphus jujuba])

HSP 1 Score: 211.1 bits (536), Expect = 2.1e-51
Identity = 120/228 (52.63%), Postives = 167/228 (73.25%), Query Frame = 1


Query: 1   MGNSIGGRRRVKVMKVDGEILKLKTPIRVSEVLKDYPDHVLMESEAVKHYGVKAKPLEPQ 60
           MGNSIGGR++ KVMK++GE  KLKTPI+V +V+KDYP HVL++SEAVKH+G++AKP+EPQ
Sbjct: 1   MGNSIGGRKKAKVMKINGETFKLKTPIQVWDVVKDYPGHVLLDSEAVKHFGIRAKPMEPQ 60

Query: 61  QDLNKKKIYFLLQLPKISNPEPPERIPRRVRSSGVNMSAKDRLDLLMLSRRTMSEVAITR 120
           Q L  KKIYFL++LPK  + +  ++  RRVR SG+NMSAKDRL+ LMLSRR++S++++ R
Sbjct: 61  QQLRPKKIYFLVELPKFLDHDQDQKATRRVR-SGINMSAKDRLECLMLSRRSVSDLSMVR 120

Query: 121 PSPVLAAASSAEPRFHSGPMQVKMKIPRSQVAKLMEESRNEGEIAEKIINLYLKNEVNSG 180
                  +SS +   +SGPM+VKM++P+SQVAKLMEES++  E+AEKII+LY++N     
Sbjct: 121 -----KPSSSMDSGSNSGPMRVKMRLPKSQVAKLMEESKDGVEVAEKIISLYMEN----- 180

Query: 181 GGGGGGHGDAVAGSGGF-----DAGRHPEPWKPSLVSSVRENSKVHRE 224
           GGG  GH   + G  G      DA R P P  P+ + S+ E+ K  ++
Sbjct: 181 GGGADGHMPPLEGGDGLLHRHSDARRKP-PRLPAGLGSIGEDCKADKK 216

[Close]

BLAST of CmoCh04G024030 vs. NCBI nr
Match: gi|823122597|ref|XP_012471773.1| (PREDICTED: uncharacterized protein At1g66480 isoform X1 [Gossypium raimondii])

HSP 1 Score: 210.3 bits (534), Expect = 3.7e-51
Identity = 126/236 (53.39%), Postives = 160/236 (67.80%), Query Frame = 1


Query: 1   MGNSIGGRRRVKVMKVDGEILKLKTPIRVSEVLKDYPD-HVLMESEAVKHYGVKAKPLEP 60
           MGNSIGGR + KVMK+DGE +KLKTPIRV +VLKDYP  HVL++S+ VKHYG++AKPLEP
Sbjct: 1   MGNSIGGRNKAKVMKIDGETIKLKTPIRVWDVLKDYPTGHVLLDSQTVKHYGIRAKPLEP 60

Query: 61  QQDLNKKKIYFLLQLPKISNPEPPERIPRRVRSSGVNMSAKDRLDLLMLSRRTMSEVAIT 120
           Q+ L  KKIYFL++LPK+++ E   + PRRVRS G++MSAKDRL+ LMLSRRT+S++++ 
Sbjct: 61  QESLKPKKIYFLVELPKLADDE-VHKAPRRVRSGGIHMSAKDRLECLMLSRRTVSDLSMV 120

Query: 121 RPSPVLAAASSAE----PRFHSGPMQVKMKIPRSQVAKLMEESRNEGEIAEKIINLYLKN 180
           RPS                   G M VKM++P+SQ+AKLMEES++  E+AEKI++LY  N
Sbjct: 121 RPSSTSMVPDGVRLGGGGTSGGGMMTVKMRLPKSQMAKLMEESKDGVEVAEKILDLYTGN 180

Query: 181 EVNSGGGGGGGHGDAVAGSGGFDAGR--HPE-PWKPSLVSSVRENSKVHREVCSSF 229
                            GSGG DAG   H E PWKP L  +V EN K  RE   SF
Sbjct: 181 ----------------GGSGGDDAGNRIHREAPWKPGL-GTVGENFKPKREKRVSF 218

The following BLAST results are available for this feature:

BLAST of CmoCh04G024030 vs. Swiss-Prot


Match Name	E-value	Identity	Description
Y1648_ARATH	3.2e-39	46.89	Uncharacterized protein At1g66480 OS=Arabidopsis thaliana GN=At1g66480 PE=2 SV=1	[more]

BLAST of CmoCh04G024030 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KRN5_CUCSA	4.6e-93	79.50	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G418770 PE=4 SV=1	[more]
A0A061EH62_THECC	4.2e-54	54.15	Plastid movement impaired 2 OS=Theobroma cacao GN=TCM_019256 PE=4 SV=1	[more]
A0A0D2QMN0_GOSRA	2.5e-51	53.39	Uncharacterized protein OS=Gossypium raimondii GN=B456_001G086600 PE=4 SV=1	[more]
A0A0D2PP13_GOSRA	5.7e-51	53.68	Uncharacterized protein OS=Gossypium raimondii GN=B456_001G086600 PE=4 SV=1	[more]
A0A0B0MQ13_GOSAR	2.8e-50	52.14	Uncharacterized protein OS=Gossypium arboreum GN=F383_25869 PE=4 SV=1	[more]

BLAST of CmoCh04G024030 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G66480.1	1.8e-40	46.89	plastid movement impaired 2	[more]
AT2G01340.1	8.7e-35	44.32	Encodes a protein whose expression is responsive to nematode infecti...	[more]
AT5G37840.1	9.6e-34	45.60	BEST Arabidopsis thaliana protein match is: plastid movement impaire...	[more]
AT1G71015.1	1.8e-32	44.51	unknown protein	[more]

BLAST of CmoCh04G024030 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700195865\|gb\|KGN51042.1\|	6.6e-93	79.50	hypothetical protein Csa_5G418770 [Cucumis sativus]	[more]
gi\|449445092\|ref\|XP_004140307.1\|	1.5e-92	81.74	PREDICTED: uncharacterized protein At1g66480-like [Cucumis sativus]	[more]
gi\|590652162\|ref\|XP_007033077.1\|	6.0e-54	54.15	Plastid movement impaired 2 [Theobroma cacao]	[more]
gi\|1009126577\|ref\|XP_015880231.1\|	2.1e-51	52.63	PREDICTED: uncharacterized protein At1g66480 [Ziziphus jujuba]	[more]
gi\|823122597\|ref\|XP_012471773.1\|	3.7e-51	53.39	PREDICTED: uncharacterized protein At1g66480 isoform X1 [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR025322	DUF4228_plant

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G024030.1	CmoCh04G024030.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025322	Protein of unknown function DUF4228, plant	PFAM	PF14009	DUF4228	coord: 1..211 score: 1.9
None	No IPR available	PANTHER	PTHR33148	FAMILY NOT NAMED	coord: 2..232 score: 2.9
None	No IPR available	PANTHER	PTHR33148:SF6	SUBFAMILY NOT NAMED	coord: 2..232 score: 2.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G024030	Cucsa.034830	Cucumber (Gy14) v1	cgycmoB0019
CmoCh04G024030	CmaCh04G022990	Cucurbita maxima (Rimu)	cmacmoB729
CmoCh04G024030	Cla019767	Watermelon (97103) v1	cmowmB667
CmoCh04G024030	Csa5G418770	Cucumber (Chinese Long) v2	cmocuB740
CmoCh04G024030	ClCG03G008730	Watermelon (Charleston Gray)	cmowcgB647
CmoCh04G024030	CSPI05G14920	Wild cucumber (PI 183967)	cmocpiB749
CmoCh04G024030	Lsi09G009350	Bottle gourd (USVL1VR-Ls)	cmolsiB610
CmoCh04G024030	Cp4.1LG01g20030	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G024030	CsaV3_5G024000	Cucumber (Chinese Long) v3	cmocucB0876
CmoCh04G024030	Cla97C03G059950	Watermelon (97103) v2	cmowmbB719
CmoCh04G024030	Bhi12G001074	Wax gourd	cmowgoB0822
CmoCh04G024030	CsGy5G014780	Cucumber (Gy14) v2	cgybcmoB654
CmoCh04G024030	Carg18264	Silver-seed gourd	carcmoB0716

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G024030	Cucurbita moschata (Rifu)	cmocmoB262
CmoCh04G024030	Cucurbita maxima (Rimu)	cmacmoB309
CmoCh04G024030	Melon (DHL92) v3.5.1	cmomeB626
CmoCh04G024030	Cucurbita pepo (Zucchini)	cmocpeB657
CmoCh04G024030	Melon (DHL92) v3.6.1	cmomedB715
CmoCh04G024030	Silver-seed gourd	carcmoB1121