Cp4.1LG01g12010 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG01g12010
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionTCP family transcription factor family protein
LocationCp4.1LG01 : 5824075 .. 5824449 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGGCCAATTTGAACAGATCTCACATGGGTACGCCCGGATTCTGGCCGTCCCTAGGCGGAATCGGGCCGGGGTTCGTCAGCGAGAATCCGGGTTCGATTATGCCCAAATTCGGGTTCCATGGATTCGAATTTCAGGGGATGAATTTGGGATCCGTGAATTTCCCGACGATAATCGGGAATCAGCAGCCGCAGCAGCAAATACCGGGACTGGAGCTAGGGCTTTCGCAGGAGGGGAATAATGTAAGAGGGATGTTGAACCCGCCTTCATATTCCCAAATCTATCACCAAATAGGGCAGAGTCGGGACCCCTCTGCGGCGGCATTGGAGCAGGACCAAGCTCCTGATAAAGACAACTCTCAAGAATCGAGATGA

mRNA sequence

ATGGGGGCCAATTTGAACAGATCTCACATGGGTACGCCCGGATTCTGGCCGTCCCTAGGCGGAATCGGGCCGGGGTTCGTCAGCGAGAATCCGGGTTCGATTATGCCCAAATTCGGGTTCCATGGATTCGAATTTCAGGGGATGAATTTGGGATCCGTGAATTTCCCGACGATAATCGGGAATCAGCAGCCGCAGCAGCAAATACCGGGACTGGAGCTAGGGCTTTCGCAGGAGGGGAATAATGTAAGAGGGATGTTGAACCCGCCTTCATATTCCCAAATCTATCACCAAATAGGGCAGAGTCGGGACCCCTCTGCGGCGGCATTGGAGCAGGACCAAGCTCCTGATAAAGACAACTCTCAAGAATCGAGATGA

Coding sequence (CDS)

ATGGGGGCCAATTTGAACAGATCTCACATGGGTACGCCCGGATTCTGGCCGTCCCTAGGCGGAATCGGGCCGGGGTTCGTCAGCGAGAATCCGGGTTCGATTATGCCCAAATTCGGGTTCCATGGATTCGAATTTCAGGGGATGAATTTGGGATCCGTGAATTTCCCGACGATAATCGGGAATCAGCAGCCGCAGCAGCAAATACCGGGACTGGAGCTAGGGCTTTCGCAGGAGGGGAATAATGTAAGAGGGATGTTGAACCCGCCTTCATATTCCCAAATCTATCACCAAATAGGGCAGAGTCGGGACCCCTCTGCGGCGGCATTGGAGCAGGACCAAGCTCCTGATAAAGACAACTCTCAAGAATCGAGATGA

Protein sequence

MGANLNRSHMGTPGFWPSLGGIGPGFVSENPGSIMPKFGFHGFEFQGMNLGSVNFPTIIGNQQPQQQIPGLELGLSQEGNNVRGMLNPPSYSQIYHQIGQSRDPSAAALEQDQAPDKDNSQESR
BLAST of Cp4.1LG01g12010 vs. Swiss-Prot
Match: TCP20_ARATH (Transcription factor TCP20 OS=Arabidopsis thaliana GN=TCP20 PE=1 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.8e-12
Identity = 53/137 (38.69%), Postives = 79/137 (57.66%), Query Frame = 1

Query: 2   GANLNRSHMGTPGFWPSLGGIGPG-----FVSENPGSIMPKFGFHGFEFQGMNLGSVNFP 61
           G  ++RS + T G WP++ G G G      +SE  G    + GF GF+F G+  G ++F 
Sbjct: 186 GEGVSRSSLPT-GLWPNVAGFGSGVPTTGLMSEGAGY---RIGFPGFDFPGV--GHMSFA 245

Query: 62  TIIGNQQPQQQIPGLELGLSQEGNNVRGMLNPPSYSQIYHQIGQSRDPSAAAL------- 121
           +I+G      Q+PGLELGLSQEGN   G+LNP S++QIY Q+GQ++  +   +       
Sbjct: 246 SILGGNH--NQMPGLELGLSQEGN--VGVLNPQSFTQIYQQMGQAQAQAQGRVLHHMHHN 305

Query: 122 ---EQDQAPDKDNSQES 124
               Q ++ +KD+SQ S
Sbjct: 306 HEEHQQESGEKDDSQGS 312

BLAST of Cp4.1LG01g12010 vs. TrEMBL
Match: A0A0A0KC88_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G093640 PE=4 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 7.8e-52
Identity = 104/124 (83.87%), Postives = 113/124 (91.13%), Query Frame = 1

Query: 1   MGANLNRSHMGTPGFWPSLGGIGPGFVSENPGSIMPKFGFHGFEFQGMNLGSVNFPTIIG 60
           MGANL+RSHM + GFWPSLGGIG GFVSENPGSIMPKFGFHGFE QGMNLGSVNFP +IG
Sbjct: 171 MGANLSRSHMASQGFWPSLGGIGTGFVSENPGSIMPKFGFHGFELQGMNLGSVNFPAMIG 230

Query: 61  NQQPQQQIPGLELGLSQEGNNVRGMLNPPSYSQIYHQIGQSRDPSAAALEQDQAPDKDNS 120
           NQ   QQIPGLELGLSQ+GNN+RGMLNPPS+SQIYHQIGQ+RD SA  LEQDQAP+KD+S
Sbjct: 231 NQ--HQQIPGLELGLSQDGNNLRGMLNPPSFSQIYHQIGQNRDSSAQPLEQDQAPEKDDS 290

Query: 121 QESR 125
           QESR
Sbjct: 291 QESR 292

BLAST of Cp4.1LG01g12010 vs. TrEMBL
Match: A0A0A7CC41_JATCU (Teosinte branched 1 cycloidea, PCF (TCP)-domain family protein 20 (Fragment) OS=Jatropha curcas GN=TCP20 PE=2 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.4e-16
Identity = 61/138 (44.20%), Postives = 80/138 (57.97%), Query Frame = 1

Query: 1   MGANLNRSHMGTPGFWPSLGGIGPGFVSE------NPGSIMPKFGFHGFEFQGMNLGSVN 60
           M +NL RS++     WPS+GGIG GF+S       N G+   KFGFHG EF  +N+G ++
Sbjct: 78  MTSNLGRSNLSA-AVWPSVGGIGTGFISNSGQSATNFGNESSKFGFHGIEFPNINMGLMS 137

Query: 61  FPTIIGNQQPQQQIPGLELGLSQEGNNVRGMLNPPSYSQIYHQIGQSRDPSAAALEQ--- 120
             ++       QQ PGLELGLSQ+GN   G+LN  + SQ Y Q+GQSR     +  Q   
Sbjct: 138 VYSMFSGAN--QQFPGLELGLSQDGN--IGVLNSQALSQFYQQMGQSRPAGLNSFNQQQQ 197

Query: 121 -----DQAPDKDNSQESR 125
                +Q PDKD+SQ SR
Sbjct: 198 QQQQEEQPPDKDDSQGSR 210

BLAST of Cp4.1LG01g12010 vs. TrEMBL
Match: A0A067K4V4_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18002 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.4e-16
Identity = 61/138 (44.20%), Postives = 80/138 (57.97%), Query Frame = 1

Query: 1   MGANLNRSHMGTPGFWPSLGGIGPGFVSE------NPGSIMPKFGFHGFEFQGMNLGSVN 60
           M +NL RS++     WPS+GGIG GF+S       N G+   KFGFHG EF  +N+G ++
Sbjct: 140 MTSNLGRSNLSA-AVWPSVGGIGTGFISNSGQSATNFGNESSKFGFHGIEFPNINMGLMS 199

Query: 61  FPTIIGNQQPQQQIPGLELGLSQEGNNVRGMLNPPSYSQIYHQIGQSRDPSAAALEQ--- 120
             ++       QQ PGLELGLSQ+GN   G+LN  + SQ Y Q+GQSR     +  Q   
Sbjct: 200 VYSMFSGAN--QQFPGLELGLSQDGN--IGVLNSQALSQFYQQMGQSRPAGLNSFNQQQQ 259

Query: 121 -----DQAPDKDNSQESR 125
                +Q PDKD+SQ SR
Sbjct: 260 QQQQEEQPPDKDDSQGSR 272

BLAST of Cp4.1LG01g12010 vs. TrEMBL
Match: B9RMA7_RICCO (Transcription factor, putative OS=Ricinus communis GN=RCOM_1078980 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 5.3e-16
Identity = 59/139 (42.45%), Postives = 84/139 (60.43%), Query Frame = 1

Query: 1   MGANLNRSHMGTPGFWPS-LGGIGPGFVSENPGSIM----------PKFGFHGFEFQGMN 60
           M +NL R ++ T G WPS +GGIG G++S +  S M          PKFGFHG E   +N
Sbjct: 168 MNSNLGRCNV-TNGMWPSSVGGIGAGYISNSSQSAMNFGNESANALPKFGFHGVELPNIN 227

Query: 61  LGSVNFPTIIGNQQPQQQIPGLELGLSQEGNNVRGMLNPPSYSQIYHQIGQSRDPSAAAL 120
           +G ++F ++       QQ+PGLELGLSQ+G+   G++N  + SQ Y Q+GQ+R    + +
Sbjct: 228 MGLMSFYSMFN--ATNQQVPGLELGLSQDGHT--GVMNSQALSQFYQQMGQNRTGLNSLV 287

Query: 121 E----QDQAPDKDNSQESR 125
           +    Q Q PDKD+SQ SR
Sbjct: 288 QQQQHQQQPPDKDDSQGSR 301

BLAST of Cp4.1LG01g12010 vs. TrEMBL
Match: B9GZD6_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s16630g PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 4.5e-15
Identity = 57/125 (45.60%), Postives = 76/125 (60.80%), Query Frame = 1

Query: 14  GFWPSLGGIGPGFV-----------SENPGSIMPKFGFHGFEFQGMNLGSVNFPTIIGNQ 73
           G WPS+GGIG GFV           +EN  S +PK+GF G EF  +N+G ++F ++    
Sbjct: 182 GVWPSVGGIGLGFVPNSGQSTSNFGNEN-SSTLPKYGFQGVEFPNINMGLMSFYSMFSGT 241

Query: 74  QPQQQIPGLELGLSQEGNNVRGMLNPPSYSQIYHQIGQSR---DPSAAALEQDQAPDKDN 125
              QQ+PGLELGLSQ+G++   MLNP + S  YHQ+ Q R   D      +Q+Q PDKD+
Sbjct: 242 N--QQLPGLELGLSQDGHS--AMLNPQALSPFYHQMVQGRGVLDSLNQEKQQEQPPDKDD 301

BLAST of Cp4.1LG01g12010 vs. TAIR10
Match: AT3G27010.1 (AT3G27010.1 TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20)

HSP 1 Score: 73.6 bits (179), Expect = 9.9e-14
Identity = 53/137 (38.69%), Postives = 79/137 (57.66%), Query Frame = 1

Query: 2   GANLNRSHMGTPGFWPSLGGIGPG-----FVSENPGSIMPKFGFHGFEFQGMNLGSVNFP 61
           G  ++RS + T G WP++ G G G      +SE  G    + GF GF+F G+  G ++F 
Sbjct: 186 GEGVSRSSLPT-GLWPNVAGFGSGVPTTGLMSEGAGY---RIGFPGFDFPGV--GHMSFA 245

Query: 62  TIIGNQQPQQQIPGLELGLSQEGNNVRGMLNPPSYSQIYHQIGQSRDPSAAAL------- 121
           +I+G      Q+PGLELGLSQEGN   G+LNP S++QIY Q+GQ++  +   +       
Sbjct: 246 SILGGNH--NQMPGLELGLSQEGN--VGVLNPQSFTQIYQQMGQAQAQAQGRVLHHMHHN 305

Query: 122 ---EQDQAPDKDNSQES 124
               Q ++ +KD+SQ S
Sbjct: 306 HEEHQQESGEKDDSQGS 312

BLAST of Cp4.1LG01g12010 vs. NCBI nr
Match: gi|659119854|ref|XP_008459878.1| (PREDICTED: transcription factor TCP20-like [Cucumis melo])

HSP 1 Score: 215.7 bits (548), Expect = 4.6e-53
Identity = 106/124 (85.48%), Postives = 115/124 (92.74%), Query Frame = 1

Query: 1   MGANLNRSHMGTPGFWPSLGGIGPGFVSENPGSIMPKFGFHGFEFQGMNLGSVNFPTIIG 60
           MGANL+RSHM TPGFWPSLGGIG GFVSENPGSIMPKFGFHGFEFQGMNLGSVNFP +IG
Sbjct: 173 MGANLSRSHMATPGFWPSLGGIGTGFVSENPGSIMPKFGFHGFEFQGMNLGSVNFPGMIG 232

Query: 61  NQQPQQQIPGLELGLSQEGNNVRGMLNPPSYSQIYHQIGQSRDPSAAALEQDQAPDKDNS 120
           NQ   QQIPGLELGLSQ+GNN+RGMLNPPS+SQIYHQIGQ+R+ SA  LEQDQAP+KD+S
Sbjct: 233 NQ--HQQIPGLELGLSQDGNNLRGMLNPPSFSQIYHQIGQNRESSAPPLEQDQAPEKDDS 292

Query: 121 QESR 125
           QESR
Sbjct: 293 QESR 294

BLAST of Cp4.1LG01g12010 vs. NCBI nr
Match: gi|778711824|ref|XP_011656799.1| (PREDICTED: transcription factor TCP20-like [Cucumis sativus])

HSP 1 Score: 211.1 bits (536), Expect = 1.1e-51
Identity = 104/124 (83.87%), Postives = 113/124 (91.13%), Query Frame = 1

Query: 1   MGANLNRSHMGTPGFWPSLGGIGPGFVSENPGSIMPKFGFHGFEFQGMNLGSVNFPTIIG 60
           MGANL+RSHM + GFWPSLGGIG GFVSENPGSIMPKFGFHGFE QGMNLGSVNFP +IG
Sbjct: 171 MGANLSRSHMASQGFWPSLGGIGTGFVSENPGSIMPKFGFHGFELQGMNLGSVNFPAMIG 230

Query: 61  NQQPQQQIPGLELGLSQEGNNVRGMLNPPSYSQIYHQIGQSRDPSAAALEQDQAPDKDNS 120
           NQ   QQIPGLELGLSQ+GNN+RGMLNPPS+SQIYHQIGQ+RD SA  LEQDQAP+KD+S
Sbjct: 231 NQ--HQQIPGLELGLSQDGNNLRGMLNPPSFSQIYHQIGQNRDSSAQPLEQDQAPEKDDS 290

Query: 121 QESR 125
           QESR
Sbjct: 291 QESR 292

BLAST of Cp4.1LG01g12010 vs. NCBI nr
Match: gi|719978206|ref|XP_010249094.1| (PREDICTED: transcription factor TCP20-like [Nelumbo nucifera])

HSP 1 Score: 109.0 bits (271), Expect = 6.0e-21
Identity = 64/134 (47.76%), Postives = 82/134 (61.19%), Query Frame = 1

Query: 1   MGANLNRSHMGTPGFWPSLGGIGPGFVSENPGSI----------MPKFGFHGFEFQGMNL 60
           +G NL RSH+ T G WPS+ G GPGFV  +  S           M + GFHGFE  G NL
Sbjct: 160 IGNNLGRSHVAT-GLWPSVSGFGPGFVHSSAPSTSNLGTESSNYMTRIGFHGFELPGSNL 219

Query: 61  GSVNFPTIIGNQQPQQQIPGLELGLSQEGNNVRGMLNPPSYSQIYHQIGQSRDPSAAALE 120
           G ++F +I+G     QQ+PGLELGLSQ+G+   G+LNP + SQ Y Q+GQ R  +    +
Sbjct: 220 GPMSFSSIMGGNN--QQLPGLELGLSQDGH--IGVLNPQALSQFYQQMGQGRGTTGPMQQ 279

Query: 121 QDQAPDKDNSQESR 125
           Q Q P KD+SQ SR
Sbjct: 280 QQQPPAKDDSQGSR 288

BLAST of Cp4.1LG01g12010 vs. NCBI nr
Match: gi|1009129337|ref|XP_015881712.1| (PREDICTED: transcription factor TCP20-like [Ziziphus jujuba])

HSP 1 Score: 103.6 bits (257), Expect = 2.5e-19
Identity = 62/135 (45.93%), Postives = 86/135 (63.70%), Query Frame = 1

Query: 1   MGANLNRSHMGTPGFWPSLGGIGPGFVSENPG-----------SIMPKFGFHGFEFQGMN 60
           M  NL RS + + G WPSL G+G GF+ +NPG           +++PKFGFHGF+F GMN
Sbjct: 163 MSGNLGRSQLPS-GVWPSLSGVGSGFI-QNPGQSTSNFASENLNMLPKFGFHGFDFPGMN 222

Query: 61  LGSVNFPTIIGNQQPQQQIPGLELGLSQEGNNVRGMLNPPSYSQIYHQIGQSRDPSAAAL 120
           LGS++FPTI+      QQ+PGLELGLSQ+G+    ++N  + SQ+  Q+GQ         
Sbjct: 223 LGSMSFPTILSGN--NQQVPGLELGLSQDGH--FRVINSEALSQLQQQMGQR-------- 282

Query: 121 EQDQAPDKDNSQESR 125
            Q ++P+KD+SQ SR
Sbjct: 283 PQQESPEKDDSQGSR 283

BLAST of Cp4.1LG01g12010 vs. NCBI nr
Match: gi|719983013|ref|XP_010250638.1| (PREDICTED: transcription factor TCP20 [Nelumbo nucifera])

HSP 1 Score: 99.8 bits (247), Expect = 3.7e-18
Identity = 59/134 (44.03%), Postives = 80/134 (59.70%), Query Frame = 1

Query: 1   MGANLNRSHMGTPGFWPSLGGIGPGFVSENPGSI----------MPKFGFHGFEFQGMNL 60
           MG+NL RSH+ T G WPS+GG GPGFV  +  S           + + GFHGFE  G NL
Sbjct: 160 MGSNLGRSHVAT-GLWPSVGGFGPGFVPASAPSTSNLGTESSNYLTRIGFHGFELPGSNL 219

Query: 61  GSVNFPTIIGNQQPQQQIPGLELGLSQEGNNVRGMLNPPSYSQIYHQIGQSRDPSAAALE 120
           G V F +I+G     Q +PGLELGLSQ+G+   G+LNP + +Q Y Q+GQ+R  S   + 
Sbjct: 220 GPVAFSSIMGGN--NQHLPGLELGLSQDGH--IGVLNPQALNQFYQQMGQAR--SGGPMH 279

Query: 121 QDQAPDKDNSQESR 125
           Q Q+  +   Q+ +
Sbjct: 280 QQQSQQQQQQQQQQ 286

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TCP20_ARATH1.8e-1238.69Transcription factor TCP20 OS=Arabidopsis thaliana GN=TCP20 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0KC88_CUCSA7.8e-5283.87Uncharacterized protein OS=Cucumis sativus GN=Csa_6G093640 PE=4 SV=1[more]
A0A0A7CC41_JATCU1.4e-1644.20Teosinte branched 1 cycloidea, PCF (TCP)-domain family protein 20 (Fragment) OS=... [more]
A0A067K4V4_JATCU1.4e-1644.20Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18002 PE=4 SV=1[more]
B9RMA7_RICCO5.3e-1642.45Transcription factor, putative OS=Ricinus communis GN=RCOM_1078980 PE=4 SV=1[more]
B9GZD6_POPTR4.5e-1545.60Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s16630g PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT3G27010.19.9e-1438.69 TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20[more]
Match NameE-valueIdentityDescription
gi|659119854|ref|XP_008459878.1|4.6e-5385.48PREDICTED: transcription factor TCP20-like [Cucumis melo][more]
gi|778711824|ref|XP_011656799.1|1.1e-5183.87PREDICTED: transcription factor TCP20-like [Cucumis sativus][more]
gi|719978206|ref|XP_010249094.1|6.0e-2147.76PREDICTED: transcription factor TCP20-like [Nelumbo nucifera][more]
gi|1009129337|ref|XP_015881712.1|2.5e-1945.93PREDICTED: transcription factor TCP20-like [Ziziphus jujuba][more]
gi|719983013|ref|XP_010250638.1|3.7e-1844.03PREDICTED: transcription factor TCP20 [Nelumbo nucifera][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0065007 biological regulation
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005575 cellular_component
cellular_component GO:0005634 nucleus
molecular_function GO:0003674 molecular_function
molecular_function GO:0003677 DNA binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g12010.1Cp4.1LG01g12010.1mRNA


The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG01g12010Cp4.1LG17g09250Cucurbita pepo (Zucchini)cpecpeB330