Cla001506 (gene) Watermelon (97103) v1

Overview
NameCla001506
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionTranscription factor-like (AHRD V1 *-*- Q650T3_ORYSJ); contains Interpro domain(s) IPR005333 Transcription factor, TCP
LocationChr6 : 2011967 .. 2012824 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGACCACAACAACAACAACAGCAACAATAACAACAAGCCATCAGTTGCAGCTTCATCAACTCCAATTACTCCATTACCACCTTCCTCAGATATCAAAGACTTCAGTCTCATTATTGCTAACAAAGATCAAAACAAGAAACAACAACAACAACAACAACAATTGGCTCCTAAACGTACCTCCAATAAAGACCGTCACAAGAAAGTCGACGGCCGTGGTCGTAGGATCCGTATGCCTGCTCTCTGCGCTGCCCGTGTCTTTCAATTGACTCGCGAATTAGGCCATAAGACTGATGGCGAAACCATCCAGTGGCTTCTCCAACAAGCTGAGCCTTCCATCATCGCCGCCACTGGCTCCGGTACTATCCCTGCCTCCGCTCTTCACGTTGCTGGTGTTTCCCTTTCCGACCATGATTCCTCTGTCTCCGTCTCTGCTACCTTAACCCCCAAAATCGACGCGGTTCCCAGGTCGAATTGGGCGATGATGGGAGCCAATTTGAATAGATCTCACATGGCGACGCCTGGATTCTGGCCGTCCTTAGGCGGAATCGGCACCGGATTCGTCAGTGAGAATTCGGGTTCGATTATGCCGAAATTCGGGTTCCATGGATTTGAATTTCAAGGGATGAATTTGGGATCGGTGAATTTTCCGACGATAATTGGGAATCAACACCAACAAATACCGGGGCTGGAGTTAGGGCTTTCGCAGGATGGGAATAATCTGAGAGGGATGTTGAATCCGCCTTCGTATTCTCAAATTTATCACCAAATAGGGCAAAATCGGGAATCCTCTGCAGCGGCGCCATTGGAGCAGGATCAAGCTCCTGATAAAGACGATTCTCAAGAATCGAGATAA

mRNA sequence

ATGGCAGACCACAACAACAACAACAGCAACAATAACAACAAGCCATCAGTTGCAGCTTCATCAACTCCAATTACTCCATTACCACCTTCCTCAGATATCAAAGACTTCAGTCTCATTATTGCTAACAAAGATCAAAACAAGAAACAACAACAACAACAACAACAATTGGCTCCTAAACGTACCTCCAATAAAGACCGTCACAAGAAAGTCGACGGCCGTGGTCGTAGGATCCGTATGCCTGCTCTCTGCGCTGCCCGTGTCTTTCAATTGACTCGCGAATTAGGCCATAAGACTGATGGCGAAACCATCCAGTGGCTTCTCCAACAAGCTGAGCCTTCCATCATCGCCGCCACTGGCTCCGGTACTATCCCTGCCTCCGCTCTTCACGTTGCTGGTGTTTCCCTTTCCGACCATGATTCCTCTGTCTCCGTCTCTGCTACCTTAACCCCCAAAATCGACGCGGTTCCCAGGTCGAATTGGGCGATGATGGGAGCCAATTTGAATAGATCTCACATGGCGACGCCTGGATTCTGGCCGTCCTTAGGCGGAATCGGCACCGGATTCGTCAGTGAGAATTCGGGTTCGATTATGCCGAAATTCGGGTTCCATGGATTTGAATTTCAAGGGATGAATTTGGGATCGGTGAATTTTCCGACGATAATTGGGAATCAACACCAACAAATACCGGGGCTGGAGTTAGGGCTTTCGCAGGATGGGAATAATCTGAGAGGGATGTTGAATCCGCCTTCGTATTCTCAAATTTATCACCAAATAGGGCAAAATCGGGAATCCTCTGCAGCGGCGCCATTGGAGCAGGATCAAGCTCCTGATAAAGACGATTCTCAAGAATCGAGATAA

Coding sequence (CDS)

ATGGCAGACCACAACAACAACAACAGCAACAATAACAACAAGCCATCAGTTGCAGCTTCATCAACTCCAATTACTCCATTACCACCTTCCTCAGATATCAAAGACTTCAGTCTCATTATTGCTAACAAAGATCAAAACAAGAAACAACAACAACAACAACAACAATTGGCTCCTAAACGTACCTCCAATAAAGACCGTCACAAGAAAGTCGACGGCCGTGGTCGTAGGATCCGTATGCCTGCTCTCTGCGCTGCCCGTGTCTTTCAATTGACTCGCGAATTAGGCCATAAGACTGATGGCGAAACCATCCAGTGGCTTCTCCAACAAGCTGAGCCTTCCATCATCGCCGCCACTGGCTCCGGTACTATCCCTGCCTCCGCTCTTCACGTTGCTGGTGTTTCCCTTTCCGACCATGATTCCTCTGTCTCCGTCTCTGCTACCTTAACCCCCAAAATCGACGCGGTTCCCAGGTCGAATTGGGCGATGATGGGAGCCAATTTGAATAGATCTCACATGGCGACGCCTGGATTCTGGCCGTCCTTAGGCGGAATCGGCACCGGATTCGTCAGTGAGAATTCGGGTTCGATTATGCCGAAATTCGGGTTCCATGGATTTGAATTTCAAGGGATGAATTTGGGATCGGTGAATTTTCCGACGATAATTGGGAATCAACACCAACAAATACCGGGGCTGGAGTTAGGGCTTTCGCAGGATGGGAATAATCTGAGAGGGATGTTGAATCCGCCTTCGTATTCTCAAATTTATCACCAAATAGGGCAAAATCGGGAATCCTCTGCAGCGGCGCCATTGGAGCAGGATCAAGCTCCTGATAAAGACGATTCTCAAGAATCGAGATAA

Protein sequence

MADHNNNNSNNNNKPSVAASSTPITPLPPSSDIKDFSLIIANKDQNKKQQQQQQQLAPKRTSNKDRHKKVDGRGRRIRMPALCAARVFQLTRELGHKTDGETIQWLLQQAEPSIIAATGSGTIPASALHVAGVSLSDHDSSVSVSATLTPKIDAVPRSNWAMMGANLNRSHMATPGFWPSLGGIGTGFVSENSGSIMPKFGFHGFEFQGMNLGSVNFPTIIGNQHQQIPGLELGLSQDGNNLRGMLNPPSYSQIYHQIGQNRESSAAAPLEQDQAPDKDDSQESR
Homology
[Close]
BLAST of Cla001506 vs. Swiss-Prot
Match: TCP20_ARATH (Transcription factor TCP20 OS=Arabidopsis thaliana GN=TCP20 PE=1 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 7.8e-64
Identity = 139/278 (50.00%), Postives = 184/278 (66.19%), Query Frame = 1 

Query: 29  PSSDIKDFSLIIANKDQN-KKQQQQQQQLAPKRTSNKDRHKKVDGRGRRIRMPALCAARV 88
           P+++IKDF ++++  D+   K+ Q Q QL PKR+SNKDRH KV+GRGRRIRMPALCAAR+
Sbjct: 43  PTTEIKDFQIVVSASDKEPNKKSQNQNQLGPKRSSNKDRHTKVEGRGRRIRMPALCAARI 102

Query: 89  FQLTRELGHKTDGETIQWLLQQAEPSIIAATGSGTIPASALHVAGVSLSDHD-SSVSVSA 148
           FQLTRELGHK+DGETIQWLLQQAEPSIIAATGSGTIPASAL  +  + + H   S++   
Sbjct: 103 FQLTRELGHKSDGETIQWLLQQAEPSIIAATGSGTIPASALASSAATSNHHQGGSLTAGL 162

Query: 149 TLTPKIDAVPRS-----NWAMMGA-NLNRSHMATPGFWPSLGGIG-----TGFVSENSGS 208
            ++  +D    S     NW + G   ++RS + T G WP++ G G     TG +SE +G 
Sbjct: 163 MISHDLDGGSSSSGRPLNWGIGGGEGVSRSSLPT-GLWPNVAGFGSGVPTTGLMSEGAGY 222

Query: 209 IMPKFGFHGFEFQGMNLGSVNFPTIIGNQHQQIPGLELGLSQDGNNLRGMLNPPSYSQIY 268
              + GF GF+F G  +G ++F +I+G  H Q+PGLELGLSQ+GN   G+LNP S++QIY
Sbjct: 223 ---RIGFPGFDFPG--VGHMSFASILGGNHNQMPGLELGLSQEGN--VGVLNPQSFTQIY 282

Query: 269 HQIGQNRESSAAAPL---------EQDQAPDKDDSQES 285
            Q+GQ +  +    L          Q ++ +KDDSQ S
Sbjct: 283 QQMGQAQAQAQGRVLHHMHHNHEEHQQESGEKDDSQGS 312

[Close]
BLAST of Cla001506 vs. Swiss-Prot
Match: TCP15_ARATH (Transcription factor TCP15 OS=Arabidopsis thaliana GN=TCP15 PE=1 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 6.6e-31
Identity = 78/166 (46.99%), Postives = 100/166 (60.24%), Query Frame = 1 

Query: 10  NNNNKPSVAASSTPITPLPPSSDIKDFSLIIANKDQNKKQQQQQQQLAPKRTSNKDRHKK 69
           ++N++P+      P+  L  S+     SL I +       + ++    PKRTS KDRH K
Sbjct: 6   DHNHRPNF-----PLQLLDSSTSSSSTSLAIISTTSEPNSEPKKPP--PKRTSTKDRHTK 65

Query: 70  VDGRGRRIRMPALCAARVFQLTRELGHKTDGETIQWLLQQAEPSIIAATGSGTIPASALH 129
           V+GRGRRIRMPA+CAARVFQLTRELGHK+DGETI+WLLQQAEP++IAATG+GTIPA+   
Sbjct: 66  VEGRGRRIRMPAMCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTS 125

Query: 130 VAGVSLSDHDSSVSVSATLTPKIDAVPRSNWAMMGANLNRSHMATP 176
           +  +SL    SS+S +   T        S    M  +L   H   P
Sbjct: 126 L-NISLRSSRSSLSAAHLRTTPSSYYFHSPHQSMTHHLQHQHQVRP 163

[Close]
BLAST of Cla001506 vs. Swiss-Prot
Match: TCP23_ARATH (Transcription factor TCP23 OS=Arabidopsis thaliana GN=TCP23 PE=1 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 1.9e-30
Identity = 76/149 (51.01%), Postives = 93/149 (62.42%), Query Frame = 1 

Query: 1   MADHNNNNSNNNNKPSVAASSTPITPLPPSSDIKDFSLIIANKDQNKKQQQQQQQLAPKR 60
           M  HNNN SNNN        +T    L PS      S+ +     N           P +
Sbjct: 1   MESHNNNQSNNN--------TTGSAHLVPSMGPISGSVSLTTTAPNSTTTTVTAAKTPAK 60

Query: 61  TSNKDRHKKVDGRGRRIRMPALCAARVFQLTRELGHKTDGETIQWLLQQAEPSIIAATGS 120
             +KDRH KVDGRGRRIRMPA+CAARVFQLTREL HK+DGETI+WLLQQAEP+IIAATG+
Sbjct: 61  RPSKDRHIKVDGRGRRIRMPAICAARVFQLTRELQHKSDGETIEWLLQQAEPAIIAATGT 120

Query: 121 GTIPASALHVAGVSLSDHDSSVSVSATLT 150
           GTIPA   +++ +++S   S  ++SA L+
Sbjct: 121 GTIPA---NISTLNISLRSSGSTLSAPLS 138

[Close]
BLAST of Cla001506 vs. Swiss-Prot
Match: TCP7_ARATH (Transcription factor TCP7 OS=Arabidopsis thaliana GN=TCP7 PE=2 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 7.3e-30
Identity = 74/144 (51.39%), Postives = 88/144 (61.11%), Query Frame = 1 

Query: 1   MADHNNNNSNNNNKPSVAASSTPITPLPPSSDIKDFSLIIANKDQNKKQQQQQQQLAPKR 60
           M+ +NNNN+NNNN   +  SS                        N    +QQ  +  K+
Sbjct: 1   MSINNNNNNNNNNNDGLMISS------------------------NGALIEQQPSVVVKK 60

Query: 61  TSNKDRHKKVDGRGRRIRMPALCAARVFQLTRELGHKTDGETIQWLLQQAEPSIIAATGS 120
              KDRH KVDGRGRRIRMP +CAARVFQLTRELGHK+DG+TI+WLL+QAEPSIIAATG+
Sbjct: 61  PPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGT 119

Query: 121 GTIPASALHVAGVSLSDHDSSVSV 145
           GT PAS    A VS+    +S S+
Sbjct: 121 GTTPAS-FSTASVSIRGATNSTSL 119

[Close]
BLAST of Cla001506 vs. Swiss-Prot
Match: TCP14_ARATH (Transcription factor TCP14 OS=Arabidopsis thaliana GN=TCP14 PE=1 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 2.1e-29
Identity = 77/161 (47.83%), Postives = 99/161 (61.49%), Query Frame = 1 

Query: 8   NSNNNNKPSVAASST--------PITPLPPSSDIKDFSLIIANKDQNKKQQQQQQQLAPK 67
           + N+  +PS ++SS+         ++   P S  +        K+  + Q++     A K
Sbjct: 50  DDNHQQQPSPSSSSSLFSLHQHQQLSQSQPQSQSQKSQPQTTQKELLQTQEESAVVAAKK 109

Query: 68  ----RTSNKDRHKKVDGRGRRIRMPALCAARVFQLTRELGHKTDGETIQWLLQQAEPSII 127
               R S KDRH KVDGRGRRIRMPALCAARVFQLTRELGHK+DGETI+WLLQQAEPS+I
Sbjct: 110 PPLKRASTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPSVI 169

Query: 128 AATGSGTIPAS------ALHVAGVSLSDHDSSVSVSATLTP 151
           AATG+GTIPA+      +L  +G S+S      S ++T +P
Sbjct: 170 AATGTGTIPANFTSLNISLRSSGSSMSLPSHFRSAASTFSP 210

[Close]
BLAST of Cla001506 vs. TrEMBL
Match: A0A0A0KC88_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G093640 PE=4 SV=1)

HSP 1 Score: 484.6 bits (1246), Expect = 8.5e-134
Identity = 247/293 (84.30%), Postives = 264/293 (90.10%), Query Frame = 1 

Query: 1   MADHNNNNSNNNNK--PSVAASSTPIT--PLPP-SSDIKDFSLIIANKDQNKKQQQQQ-- 60
           MAD NNNN+N ++   PS A SS+P+T  PLP  SSDIKDF+LII+NKDQN         
Sbjct: 1   MADQNNNNNNKHHPLLPSPATSSSPLTTPPLPTTSSDIKDFTLIISNKDQNNSNSNNNIN 60

Query: 61  -QQLAPKRTSNKDRHKKVDGRGRRIRMPALCAARVFQLTRELGHKTDGETIQWLLQQAEP 120
            +QLAPKRTSNKDRHKKVDGRGRRIRMPALCAARVFQLTRELGHKTDGETIQWLLQQAEP
Sbjct: 61  NKQLAPKRTSNKDRHKKVDGRGRRIRMPALCAARVFQLTRELGHKTDGETIQWLLQQAEP 120

Query: 121 SIIAATGSGTIPASALHVAGVSLSDHDSSVSVSATLTPKIDAVPRSNWAMMGANLNRSHM 180
           SIIAATGSGTIPASALH  GVSLSDHDSSVSVSA+LTPKI+AVPR+NWAMMGANL+RSHM
Sbjct: 121 SIIAATGSGTIPASALHAVGVSLSDHDSSVSVSASLTPKIEAVPRTNWAMMGANLSRSHM 180

Query: 181 ATPGFWPSLGGIGTGFVSENSGSIMPKFGFHGFEFQGMNLGSVNFPTIIGNQHQQIPGLE 240
           A+ GFWPSLGGIGTGFVSEN GSIMPKFGFHGFE QGMNLGSVNFP +IGNQHQQIPGLE
Sbjct: 181 ASQGFWPSLGGIGTGFVSENPGSIMPKFGFHGFELQGMNLGSVNFPAMIGNQHQQIPGLE 240

Query: 241 LGLSQDGNNLRGMLNPPSYSQIYHQIGQNRESSAAAPLEQDQAPDKDDSQESR 286
           LGLSQDGNNLRGMLNPPS+SQIYHQIGQNR+SS A PLEQDQAP+KDDSQESR
Sbjct: 241 LGLSQDGNNLRGMLNPPSFSQIYHQIGQNRDSS-AQPLEQDQAPEKDDSQESR 292

[Close]
BLAST of Cla001506 vs. TrEMBL
Match: B9RMA7_RICCO (Transcription factor, putative OS=Ricinus communis GN=RCOM_1078980 PE=4 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 6.8e-75
Identity = 158/275 (57.45%), Postives = 193/275 (70.18%), Query Frame = 1 

Query: 30  SSDIKDFSLIIANKDQNKKQQQQQQQLAPKRTSNKDRHKKVDGRGRRIRMPALCAARVFQ 89
           +++IKDF ++IANKD NKKQ      LAPKR+SNKDRHKKVDGRGRRIRMPALCAAR+FQ
Sbjct: 36  TAEIKDFQIMIANKDDNKKQ------LAPKRSSNKDRHKKVDGRGRRIRMPALCAARIFQ 95

Query: 90  LTRELGHKTDGETIQWLLQQAEPSIIAATGSGTIPASALHVAGVSLSDHDSSVSVSAT-- 149
           LTRELGHK+DGETIQWLLQQAEPSIIAATG+GTIPASAL  AG S+S   +SVS      
Sbjct: 96  LTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALAAAGASVSQQGNSVSAGLHSK 155

Query: 150 ---LTPKIDAVPRSNWAMMGANLNRSHMATPGFWPS-LGGIGTGFVSENSGSIM------ 209
              + P + +  R+NW MM +NL R ++ T G WPS +GGIG G++S +S S M      
Sbjct: 156 MEGIGPSVGSRDRANWTMMNSNLGRCNV-TNGMWPSSVGGIGAGYISNSSQSAMNFGNES 215

Query: 210 ----PKFGFHGFEFQGMNLGSVNFPTIIGNQHQQIPGLELGLSQDGNNLRGMLNPPSYSQ 269
               PKFGFHG E   +N+G ++F ++    +QQ+PGLELGLSQDG+   G++N  + SQ
Sbjct: 216 ANALPKFGFHGVELPNINMGLMSFYSMFNATNQQVPGLELGLSQDGHT--GVMNSQALSQ 275

Query: 270 IYHQIGQNR---ESSAAAPLEQDQAPDKDDSQESR 286
            Y Q+GQNR    S       Q Q PDKDDSQ SR
Sbjct: 276 FYQQMGQNRTGLNSLVQQQQHQQQPPDKDDSQGSR 301

[Close]
BLAST of Cla001506 vs. TrEMBL
Match: A0A067K4V4_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18002 PE=4 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 1.3e-73
Identity = 155/273 (56.78%), Postives = 193/273 (70.70%), Query Frame = 1 

Query: 31  SDIKDFSLIIANKDQNKKQQQQQQQLAPKRTSNKDRHKKVDGRGRRIRMPALCAARVFQL 90
           S+IKDF ++I+NKD + K+     QLAPKR+SNKDRHKKVDGRGRRIRMPALCAAR+FQL
Sbjct: 8   SEIKDFQIMISNKDDSNKK-----QLAPKRSSNKDRHKKVDGRGRRIRMPALCAARIFQL 67

Query: 91  TRELGHKTDGETIQWLLQQAEPSIIAATGSGTIPASALHVAGVSLSDHDSSVSVSAT--- 150
           TRELGHK+DGETIQWLLQQAEPSIIAATG+GTIPASAL  AG S+S  ++SVS       
Sbjct: 68  TRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALAAAGASVSQQENSVSTGLQTKM 127

Query: 151 --LTPKIDAVPRSNWAMMGANLNRSHMATPGFWPSLGGIGTGFVSE------NSGSIMPK 210
             L   I +  R+NW MM +NL RS+++    WPS+GGIGTGF+S       N G+   K
Sbjct: 128 EGLGQTIGSRERANWTMMTSNLGRSNLSA-AVWPSVGGIGTGFISNSGQSATNFGNESSK 187

Query: 211 FGFHGFEFQGMNLGSVNFPTIIGNQHQQIPGLELGLSQDGNNLRGMLNPPSYSQIYHQIG 270
           FGFHG EF  +N+G ++  ++    +QQ PGLELGLSQDGN   G+LN  + SQ Y Q+G
Sbjct: 188 FGFHGIEFPNINMGLMSVYSMFSGANQQFPGLELGLSQDGN--IGVLNSQALSQFYQQMG 247

Query: 271 QNRESSAAA-------PLEQDQAPDKDDSQESR 286
           Q+R +   +         +++Q PDKDDSQ SR
Sbjct: 248 QSRPAGLNSFNQQQQQQQQEEQPPDKDDSQGSR 272

[Close]
BLAST of Cla001506 vs. TrEMBL
Match: A0A061E406_THECC (Teosinte branched 1 isoform 1 OS=Theobroma cacao GN=TCM_008601 PE=4 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 1.1e-72
Identity = 161/298 (54.03%), Postives = 200/298 (67.11%), Query Frame = 1 

Query: 8   NSNNNNKPSVAASSTPITPLPPSSDIKDFSLIIANKDQNKKQQQQQQQLAPKRTSNKDRH 67
           N   NNKP+               +IK+F ++IA+KD NKKQ      LAPKR+SNKDRH
Sbjct: 24  NMAENNKPA---------------EIKNFQIMIASKDDNKKQ------LAPKRSSNKDRH 83

Query: 68  KKVDGRGRRIRMPALCAARVFQLTRELGHKTDGETIQWLLQQAEPSIIAATGSGTIPASA 127
           KKVDGRGRRIRMPALCAAR+FQLTRELGHK+DGETIQWLLQQAEPSIIAATG+GTIPASA
Sbjct: 84  KKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASA 143

Query: 128 LHVAGVSLSDHDSSVSVSATLTPKIDAV-------PRSNWAMMGANLNRSHMATPGFWPS 187
           L  AG S+S+  +SV   A L  KI+ +        R+NW+MM  N+ RSH+ + G WPS
Sbjct: 144 LAAAGTSVSEQGNSVP--AGLHTKIEGLGSGIGSRDRNNWSMMSGNIERSHIPS-GAWPS 203

Query: 188 LGGIGTGFV-------------SENSGSIMPKFGFHGFEFQGMNLGSVNFPTIIGNQHQQ 247
           + GI +GF              SENS +I PK+GFHG EF  MN+G V+F +++   +QQ
Sbjct: 204 INGIASGFAQGSGQLTSASNFGSENSNNI-PKYGFHGLEFPHMNMGFVSFSSLLNGSNQQ 263

Query: 248 IPGLELGLSQDGNNLRGMLNPPSYSQIYHQIGQNRESSAAAPLEQDQAPDKDDSQESR 286
           +PGLELGLSQD +   G+LN  ++SQ Y Q+GQ R     +  +Q Q  DKDDSQ S+
Sbjct: 264 VPGLELGLSQDPH--FGVLNSQAFSQFYQQMGQQR-GGVGSLNQQQQLSDKDDSQGSK 293

[Close]
BLAST of Cla001506 vs. TrEMBL
Match: W9R7U5_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_017473 PE=4 SV=1)

HSP 1 Score: 280.8 bits (717), Expect = 1.9e-72
Identity = 153/270 (56.67%), Postives = 198/270 (73.33%), Query Frame = 1 

Query: 31  SDIKDFSLIIANKDQNKKQQQQQQQLAPKRTSNKDRHKKVDGRGRRIRMPALCAARVFQL 90
           ++IKDF +IIANK+ +     ++QQLAPKR+SNKDRHKKVDGRGRRIRMPALCAARVFQL
Sbjct: 7   AEIKDFQIIIANKE-DANNNTKKQQLAPKRSSNKDRHKKVDGRGRRIRMPALCAARVFQL 66

Query: 91  TRELGHKTDGETIQWLLQQAEPSIIAATGSGTIPASALHVAGVSLSDHDSSVSVSATLTP 150
           TRELGHK+DGETIQWLLQQAEPSIIAATG+GTIPASAL  AG S+S+  +  SVS+ L  
Sbjct: 67  TRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALAAAGSSVSEQGN--SVSSALHT 126

Query: 151 KIDAVPRSNWAMMGANLNRSHMATPGFWPSLGGIGTGFV-----------SENSGSIMPK 210
           +++ + R+NWA+M  NL RSH    G WP +GG G+GF             EN+  ++PK
Sbjct: 127 RMEDLGRANWAVMSGNLGRSH----GIWPGIGGFGSGFFPNSGQSTTSFGGENANMLLPK 186

Query: 211 FGFHGFEF-QGMNLGSVNFPTIIGNQHQQIPGLELGLSQDGNNLRGMLNPPSYSQIYHQI 270
           FGFHGF+F  G+NLG+V+F T+IG  +QQ+PGLELGLSQDG ++R +LN  + +Q+  Q 
Sbjct: 187 FGFHGFDFPPGVNLGAVSFNTVIGGGNQQVPGLELGLSQDG-HIR-VLNSQTLAQLQQQQ 246

Query: 271 GQNRESSAAAP------LEQDQAPDKDDSQ 283
            Q  + S+         + + ++P+KDDSQ
Sbjct: 247 QQMGQRSSGGDGGGDSLVPRHRSPEKDDSQ 267

[Close]
BLAST of Cla001506 vs. NCBI nr
Match: gi|659119854|ref|XP_008459878.1| (PREDICTED: transcription factor TCP20-like [Cucumis melo])

HSP 1 Score: 499.6 bits (1285), Expect = 3.6e-138
Identity = 255/295 (86.44%), Postives = 268/295 (90.85%), Query Frame = 1 

Query: 1   MADHNNNNSNNNNK----PSVAASSTPIT--PLP-PSSDIKDFSLIIANKDQNKKQQ--- 60
           MAD NNNN+NNN      PS A SS+P+T  PLP PSSDIKDF+LII+NKDQN       
Sbjct: 1   MADQNNNNNNNNKHHPLLPSPATSSSPLTTPPLPTPSSDIKDFTLIISNKDQNNSNSNSN 60

Query: 61  QQQQQLAPKRTSNKDRHKKVDGRGRRIRMPALCAARVFQLTRELGHKTDGETIQWLLQQA 120
              +QLAPKRTSNKDRHKKVDGRGRRIRMPALCAARVFQLTRELGHKTDGETIQWLLQQA
Sbjct: 61  NNNKQLAPKRTSNKDRHKKVDGRGRRIRMPALCAARVFQLTRELGHKTDGETIQWLLQQA 120

Query: 121 EPSIIAATGSGTIPASALHVAGVSLSDHDSSVSVSATLTPKIDAVPRSNWAMMGANLNRS 180
           EPSIIAATGSGTIPASALH AGVSLSDHDSSVSVSA+LTPKI+AVPR+NWAMMGANL+RS
Sbjct: 121 EPSIIAATGSGTIPASALHAAGVSLSDHDSSVSVSASLTPKIEAVPRTNWAMMGANLSRS 180

Query: 181 HMATPGFWPSLGGIGTGFVSENSGSIMPKFGFHGFEFQGMNLGSVNFPTIIGNQHQQIPG 240
           HMATPGFWPSLGGIGTGFVSEN GSIMPKFGFHGFEFQGMNLGSVNFP +IGNQHQQIPG
Sbjct: 181 HMATPGFWPSLGGIGTGFVSENPGSIMPKFGFHGFEFQGMNLGSVNFPGMIGNQHQQIPG 240

Query: 241 LELGLSQDGNNLRGMLNPPSYSQIYHQIGQNRESSAAAPLEQDQAPDKDDSQESR 286
           LELGLSQDGNNLRGMLNPPS+SQIYHQIGQNRESS A PLEQDQAP+KDDSQESR
Sbjct: 241 LELGLSQDGNNLRGMLNPPSFSQIYHQIGQNRESS-APPLEQDQAPEKDDSQESR 294

[Close]
BLAST of Cla001506 vs. NCBI nr
Match: gi|778711824|ref|XP_011656799.1| (PREDICTED: transcription factor TCP20-like [Cucumis sativus])

HSP 1 Score: 484.6 bits (1246), Expect = 1.2e-133
Identity = 247/293 (84.30%), Postives = 264/293 (90.10%), Query Frame = 1 

Query: 1   MADHNNNNSNNNNK--PSVAASSTPIT--PLPP-SSDIKDFSLIIANKDQNKKQQQQQ-- 60
           MAD NNNN+N ++   PS A SS+P+T  PLP  SSDIKDF+LII+NKDQN         
Sbjct: 1   MADQNNNNNNKHHPLLPSPATSSSPLTTPPLPTTSSDIKDFTLIISNKDQNNSNSNNNIN 60

Query: 61  -QQLAPKRTSNKDRHKKVDGRGRRIRMPALCAARVFQLTRELGHKTDGETIQWLLQQAEP 120
            +QLAPKRTSNKDRHKKVDGRGRRIRMPALCAARVFQLTRELGHKTDGETIQWLLQQAEP
Sbjct: 61  NKQLAPKRTSNKDRHKKVDGRGRRIRMPALCAARVFQLTRELGHKTDGETIQWLLQQAEP 120

Query: 121 SIIAATGSGTIPASALHVAGVSLSDHDSSVSVSATLTPKIDAVPRSNWAMMGANLNRSHM 180
           SIIAATGSGTIPASALH  GVSLSDHDSSVSVSA+LTPKI+AVPR+NWAMMGANL+RSHM
Sbjct: 121 SIIAATGSGTIPASALHAVGVSLSDHDSSVSVSASLTPKIEAVPRTNWAMMGANLSRSHM 180

Query: 181 ATPGFWPSLGGIGTGFVSENSGSIMPKFGFHGFEFQGMNLGSVNFPTIIGNQHQQIPGLE 240
           A+ GFWPSLGGIGTGFVSEN GSIMPKFGFHGFE QGMNLGSVNFP +IGNQHQQIPGLE
Sbjct: 181 ASQGFWPSLGGIGTGFVSENPGSIMPKFGFHGFELQGMNLGSVNFPAMIGNQHQQIPGLE 240

Query: 241 LGLSQDGNNLRGMLNPPSYSQIYHQIGQNRESSAAAPLEQDQAPDKDDSQESR 286
           LGLSQDGNNLRGMLNPPS+SQIYHQIGQNR+SS A PLEQDQAP+KDDSQESR
Sbjct: 241 LGLSQDGNNLRGMLNPPSFSQIYHQIGQNRDSS-AQPLEQDQAPEKDDSQESR 292

[Close]
BLAST of Cla001506 vs. NCBI nr
Match: gi|1009129337|ref|XP_015881712.1| (PREDICTED: transcription factor TCP20-like [Ziziphus jujuba])

HSP 1 Score: 289.3 bits (739), Expect = 7.5e-75
Identity = 161/273 (58.97%), Postives = 197/273 (72.16%), Query Frame = 1 

Query: 31  SDIKDFSLIIANKDQNKKQQQQQQQLAPKRTSNKDRHKKVDGRGRRIRMPALCAARVFQL 90
           ++IKDF ++IANK+ NKKQ      LAPKR SNKDRHKKVDGRGRRIRMPALCAARVFQL
Sbjct: 31  AEIKDFQIMIANKEDNKKQ------LAPKRNSNKDRHKKVDGRGRRIRMPALCAARVFQL 90

Query: 91  TRELGHKTDGETIQWLLQQAEPSIIAATGSGTIPASALHVAGVSLSDHDSSVSVSATLTP 150
           TRELGHK+DGETIQWLLQQAEPSIIAATG+GTIPASAL + G S+S+  +SVS SA  T 
Sbjct: 91  TRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALALTGSSVSEQGNSVS-SALHTK 150

Query: 151 K-------IDAVPRSNWAMMGANLNRSHMATPGFWPSLGGIGTGFV-----------SEN 210
                   I +V R+NWA M  NL RS + + G WPSL G+G+GF+           SEN
Sbjct: 151 MEELGPGGIGSVGRANWAFMSGNLGRSQLPS-GVWPSLSGVGSGFIQNPGQSTSNFASEN 210

Query: 211 SGSIMPKFGFHGFEFQGMNLGSVNFPTIIGNQHQQIPGLELGLSQDGNNLRGMLNPPSYS 270
             +++PKFGFHGF+F GMNLGS++FPTI+   +QQ+PGLELGLSQDG+    ++N  + S
Sbjct: 211 L-NMLPKFGFHGFDFPGMNLGSMSFPTILSGNNQQVPGLELGLSQDGH--FRVINSEALS 270

Query: 271 QIYHQIGQNRESSAAAPLEQDQAPDKDDSQESR 286
           Q+  Q+GQ           Q ++P+KDDSQ SR
Sbjct: 271 QLQQQMGQR---------PQQESPEKDDSQGSR 283

[Close]
BLAST of Cla001506 vs. NCBI nr
Match: gi|255547638|ref|XP_002514876.1| (PREDICTED: transcription factor TCP20 [Ricinus communis])

HSP 1 Score: 288.9 bits (738), Expect = 9.8e-75
Identity = 158/275 (57.45%), Postives = 193/275 (70.18%), Query Frame = 1 

Query: 30  SSDIKDFSLIIANKDQNKKQQQQQQQLAPKRTSNKDRHKKVDGRGRRIRMPALCAARVFQ 89
           +++IKDF ++IANKD NKKQ      LAPKR+SNKDRHKKVDGRGRRIRMPALCAAR+FQ
Sbjct: 36  TAEIKDFQIMIANKDDNKKQ------LAPKRSSNKDRHKKVDGRGRRIRMPALCAARIFQ 95

Query: 90  LTRELGHKTDGETIQWLLQQAEPSIIAATGSGTIPASALHVAGVSLSDHDSSVSVSAT-- 149
           LTRELGHK+DGETIQWLLQQAEPSIIAATG+GTIPASAL  AG S+S   +SVS      
Sbjct: 96  LTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALAAAGASVSQQGNSVSAGLHSK 155

Query: 150 ---LTPKIDAVPRSNWAMMGANLNRSHMATPGFWPS-LGGIGTGFVSENSGSIM------ 209
              + P + +  R+NW MM +NL R ++ T G WPS +GGIG G++S +S S M      
Sbjct: 156 MEGIGPSVGSRDRANWTMMNSNLGRCNV-TNGMWPSSVGGIGAGYISNSSQSAMNFGNES 215

Query: 210 ----PKFGFHGFEFQGMNLGSVNFPTIIGNQHQQIPGLELGLSQDGNNLRGMLNPPSYSQ 269
               PKFGFHG E   +N+G ++F ++    +QQ+PGLELGLSQDG+   G++N  + SQ
Sbjct: 216 ANALPKFGFHGVELPNINMGLMSFYSMFNATNQQVPGLELGLSQDGHT--GVMNSQALSQ 275

Query: 270 IYHQIGQNR---ESSAAAPLEQDQAPDKDDSQESR 286
            Y Q+GQNR    S       Q Q PDKDDSQ SR
Sbjct: 276 FYQQMGQNRTGLNSLVQQQQHQQQPPDKDDSQGSR 301

[Close]
BLAST of Cla001506 vs. NCBI nr
Match: gi|719978206|ref|XP_010249094.1| (PREDICTED: transcription factor TCP20-like [Nelumbo nucifera])

HSP 1 Score: 288.1 bits (736), Expect = 1.7e-74
Identity = 157/270 (58.15%), Postives = 191/270 (70.74%), Query Frame = 1 

Query: 31  SDIKDFSLIIANKDQNKKQQQQQQQLAPKRTSNKDRHKKVDGRGRRIRMPALCAARVFQL 90
           ++IKDF ++IA KD+ KKQ      LAPKR+S KDRH KVDGRGRRIRMPALCAAR+FQL
Sbjct: 29  AEIKDFQIVIAEKDEGKKQ------LAPKRSSTKDRHTKVDGRGRRIRMPALCAARIFQL 88

Query: 91  TRELGHKTDGETIQWLLQQAEPSIIAATGSGTIPASALHVAGVSLSDHDSSVSVS----- 150
           TRELGHK+DGETIQWLLQQAEPSIIAATG+GTIPASAL  AG S+S   +SVS       
Sbjct: 89  TRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALAAAGGSVSQQGTSVSAGFQSKI 148

Query: 151 ATLTPKIDAVPRSNWAMMGANLNRSHMATPGFWPSLGGIGTGFVSEN----------SGS 210
             L P I +  R+NW+++G NL RSH+AT G WPS+ G G GFV  +          S +
Sbjct: 149 DELGPGIGSGSRTNWSVIGNNLGRSHVAT-GLWPSVSGFGPGFVHSSAPSTSNLGTESSN 208

Query: 211 IMPKFGFHGFEFQGMNLGSVNFPTIIGNQHQQIPGLELGLSQDGNNLRGMLNPPSYSQIY 270
            M + GFHGFE  G NLG ++F +I+G  +QQ+PGLELGLSQDG+   G+LNP + SQ Y
Sbjct: 209 YMTRIGFHGFELPGSNLGPMSFSSIMGGNNQQLPGLELGLSQDGH--IGVLNPQALSQFY 268

Query: 271 HQIGQNRESSAAAPLEQDQAPDKDDSQESR 286
            Q+GQ R ++     +Q Q P KDDSQ SR
Sbjct: 269 QQMGQGRGTTGPMQ-QQQQPPAKDDSQGSR 288

The following BLAST results are available for this feature:
BLAST of Cla001506 vs. Swiss-Prot
Match NameE-valueIdentityDescription
TCP20_ARATH7.8e-6450.00Transcription factor TCP20 OS=Arabidopsis thaliana GN=TCP20 PE=1 SV=1[more]
TCP15_ARATH6.6e-3146.99Transcription factor TCP15 OS=Arabidopsis thaliana GN=TCP15 PE=1 SV=1[more]
TCP23_ARATH1.9e-3051.01Transcription factor TCP23 OS=Arabidopsis thaliana GN=TCP23 PE=1 SV=1[more]
TCP7_ARATH7.3e-3051.39Transcription factor TCP7 OS=Arabidopsis thaliana GN=TCP7 PE=2 SV=1[more]
TCP14_ARATH2.1e-2947.83Transcription factor TCP14 OS=Arabidopsis thaliana GN=TCP14 PE=1 SV=1[more]
BLAST of Cla001506 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KC88_CUCSA8.5e-13484.30Uncharacterized protein OS=Cucumis sativus GN=Csa_6G093640 PE=4 SV=1[more]
B9RMA7_RICCO6.8e-7557.45Transcription factor, putative OS=Ricinus communis GN=RCOM_1078980 PE=4 SV=1[more]
A0A067K4V4_JATCU1.3e-7356.78Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18002 PE=4 SV=1[more]
A0A061E406_THECC1.1e-7254.03Teosinte branched 1 isoform 1 OS=Theobroma cacao GN=TCM_008601 PE=4 SV=1[more]
W9R7U5_9ROSA1.9e-7256.67Uncharacterized protein OS=Morus notabilis GN=L484_017473 PE=4 SV=1[more]
BLAST of Cla001506 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659119854|ref|XP_008459878.1|3.6e-13886.44PREDICTED: transcription factor TCP20-like [Cucumis melo][more]
gi|778711824|ref|XP_011656799.1|1.2e-13384.30PREDICTED: transcription factor TCP20-like [Cucumis sativus][more]
gi|1009129337|ref|XP_015881712.1|7.5e-7558.97PREDICTED: transcription factor TCP20-like [Ziziphus jujuba][more]
gi|255547638|ref|XP_002514876.1|9.8e-7557.45PREDICTED: transcription factor TCP20 [Ricinus communis][more]
gi|719978206|ref|XP_010249094.1|1.7e-7458.15PREDICTED: transcription factor TCP20-like [Nelumbo nucifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR005333Transcription_factor_TCP
IPR017887TF_TCP_subgr
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0048856 anatomical structure development
biological_process GO:0009987 cellular process
biological_process GO:0050789 regulation of biological process
biological_process GO:0044699 single-organism process
biological_process GO:0065007 biological regulation
biological_process GO:0030001 metal ion transport
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0006351 transcription, DNA-templated
cellular_component GO:0005575 cellular_component
cellular_component GO:0005634 nucleus
molecular_function GO:0003674 molecular_function
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU71892watermelon EST collection version 2.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla001506Cla001506.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU71892WMU71892transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005333Transcription factor, TCPPFAMPF03634TCPcoord: 61..156
score: 8.2
IPR017887Transcription factor TCP subgroupPROFILEPS51369TCPcoord: 63..117
score: 27
NoneNo IPR availablePANTHERPTHR31072FAMILY NOT NAMEDcoord: 31..149
score: 1.4E-66coord: 253..265
score: 1.4
NoneNo IPR availablePANTHERPTHR31072:SF4TRANSCRIPTION FACTOR TCP20-RELATEDcoord: 31..149
score: 1.4E-66coord: 253..265
score: 1.4

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla001506Cla97C06G111310Watermelon (97103) v2wmwmbB407
Cla001506Csa6G093640Cucumber (Chinese Long) v2cuwmB537
Cla001506Csa3G564320Cucumber (Chinese Long) v2cuwmB278
Cla001506MELO3C014903Melon (DHL92) v3.5.1mewmB487
Cla001506MELO3C022331Melon (DHL92) v3.5.1mewmB140
Cla001506ClCG06G001980Watermelon (Charleston Gray)wcgwmB345
Cla001506CSPI06G07660Wild cucumber (PI 183967)cpiwmB556
Cla001506Cucsa.349500Cucumber (Gy14) v1cgywmB626
Cla001506CmaCh08G000050Cucurbita maxima (Rimu)cmawmB879
Cla001506CmaCh17G014290Cucurbita maxima (Rimu)cmawmB352
Cla001506CmoCh08G000050Cucurbita moschata (Rifu)cmowmB868
Cla001506CmoCh17G013720Cucurbita moschata (Rifu)cmowmB347
Cla001506Lsi09G017430Bottle gourd (USVL1VR-Ls)lsiwmB041
Cla001506Cp4.1LG01g12010Cucurbita pepo (Zucchini)cpewmB471
Cla001506Cp4.1LG17g09250Cucurbita pepo (Zucchini)cpewmB341
Cla001506CsGy6G007710Cucumber (Gy14) v2cgybwmB501
Cla001506MELO3C022331.2Melon (DHL92) v3.6.1medwmB138
Cla001506Carg03826Silver-seed gourdcarwmB0986
Cla001506Carg11585Silver-seed gourdcarwmB0015
Cla001506CsaV3_6G008050Cucumber (Chinese Long) v3cucwmB562
Cla001506Bhi12G002157Wax gourdwgowmB092
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla001506Wax gourdwgowmB528
Cla001506Watermelon (97103) v1wmwmB098
Cla001506Watermelon (97103) v1wmwmB167
Cla001506Cucumber (Gy14) v1cgywmB122
Cla001506Cucurbita pepo (Zucchini)cpewmB624
Cla001506Cucumber (Gy14) v2cgybwmB333
Cla001506Cucumber (Gy14) v2cgybwmB513
Cla001506Melon (DHL92) v3.6.1medwmB536
Cla001506Silver-seed gourdcarwmB0693
Cla001506Cucumber (Chinese Long) v3cucwmB375
Cla001506Watermelon (97103) v2wmwmbB414