Cp4.1LG01g08580 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG01g08580
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Cytochrome c oxidase copper chaperone
Location	Cp4.1LG01 : 4892270 .. 4893737 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATAAAGAACGATCAAGTGAGCTATGAGTTTATTTATTATCTCACTGTGGAAAAAATAAAATATAATAATTATCATAATTATCGTATTTTCTCCATTAGAGGCCCAGGCCCAGGCCCAGGCCCATTTAGGAAACTGCGTCCCACTTTTGAGCCTTAATTGACATTTATTTCCCCTTTTGGTTTGGAATCTTACTTCTTCCTCAAATTGCTTTGCTTTGACGCTGTCCAAATCCCTATTCGTCTTTCTTCGGTTCTGGGTTTCTCCAGGATCTTCGGCGTGCGGGGTTCGAAAGGTAAGCTCCGAATTTCTCTGCTTCTTGGTCTCCCTACCGCTTTATTGCACTTCCTAGCTGGATTGTTCGCCTTTTCTTACTATTTTTTTCTTTTCAGTAAACAGGATTGTTCCGCTTAATTTTCTCTTTCCGATTGATTGGTTCGGTTGTTTGATGGAAGGTCGATTAAGAATTTTTTTTTTCCTTCTGGAATGGTTGGGTTGGGGTGTTTTGCATGTTTGTCACTGGCGAAGAGAGTTGTTGTGGAGGTCTCTACTTCTGGTTTTTTATTGGATGACTTTCTTTGATTGCAAGTAAAGAATAAAATTTGGGTTTTGAAGGATTTTATGATTTAGTAGCCGGTGATTAAGTAAGAGTATAGTGATTCGGTTGGGGTCTTTGGATTGATGAATGGTTTCTACTTCTATATATATATATATATATATATATATCCCCTTATTGGAAAACTTTCTCTGCTTGACCAATAGTGAAATTTTGTTTAGAAAGCATAACATGATTCAGTTTGCCTGTGATCAAGTAAGATTTTTTTTACCCATAAGCCTTCACTATGATCTAATTCGATGCTCTTCATTCTCACGTTCTTCTGCTTGCAGCTTTCAGGATTTCATTGCCTTTTCCTTAAGACTGCATTCCTTGAGAAATTGTGACATGGGTGGACTACCTGTTGGAAATTCTTCGGAGTCCAAACTTGAGCAGGGATCAGCAGTGGTTAAGTCTACCCCAGATGGAAAACCAAAAAAGAAGATTTGTTGTGCCTGTCCTGATACTAAGAAGCTAAGAGATGAGTGCATTGTAGAACATGGTGAAGAATTCTGTGGTAAATGGATTGAGGCTCATCGTAAGTGTCTTCGTGCAGAGGGGTTCAATGTCTGAACTTGATAAGCCAATCATATGAATTATTTGATTTTCTGCTAGTGTACAATTTACCATTTGAGGTATACATAGATAACAGAGAATATTGAGAAATAAAGTGAGCGAAAGAGTAGGCATAGCCAAAGCTGCAGTGCAGCAAGTACAATTTGGCTGCGTATTTTTGTTGACTTGGGCCTTTGTTCATGTATTAACTTCCTCCTGGTATTCATAATTTCTTACTATCTCTTCTTTATGTGATGCCCAACAAATTCTGTATCAATATCATGTGTTCTAAATTTGTGATTCTCGCCCGATGTTGAA

mRNA sequence

ATGATAAAGAACGATCAAGATCTTCGGCGTGCGGGGTTCGAAAGCTTTCAGGATTTCATTGCCTTTTCCTTAAGACTGCATTCCTTGAGAAATTGTGACATGGGTGGACTACCTGTTGGAAATTCTTCGGAGTCCAAACTTGAGCAGGGATCAGCAGTGGTTAAGTCTACCCCAGATGGAAAACCAAAAAAGAAGATTTGTTGTGCCTGTCCTGATACTAAGAAGCTAAGAGATGAGTGCATTGTAGAACATGGTGAAGAATTCTGTGGTAAATGGATTGAGGCTCATCGTAAGTGTCTTCGTGCAGAGGGGTTCAATGTCTGAACTTGATAAGCCAATCATATGAATTATTTGATTTTCTGCTAGTGTACAATTTACCATTTGAGGTATACATAGATAACAGAGAATATTGAGAAATAAAGTGAGCGAAAGAGTAGGCATAGCCAAAGCTGCAGTGCAGCAAGTACAATTTGGCTGCGTATTTTTGTTGACTTGGGCCTTTGTTCATGTATTAACTTCCTCCTGGTATTCATAATTTCTTACTATCTCTTCTTTATGTGATGCCCAACAAATTCTGTATCAATATCATGTGTTCTAAATTTGTGATTCTCGCCCGATGTTGAA

Coding sequence (CDS)

ATGATAAAGAACGATCAAGATCTTCGGCGTGCGGGGTTCGAAAGCTTTCAGGATTTCATTGCCTTTTCCTTAAGACTGCATTCCTTGAGAAATTGTGACATGGGTGGACTACCTGTTGGAAATTCTTCGGAGTCCAAACTTGAGCAGGGATCAGCAGTGGTTAAGTCTACCCCAGATGGAAAACCAAAAAAGAAGATTTGTTGTGCCTGTCCTGATACTAAGAAGCTAAGAGATGAGTGCATTGTAGAACATGGTGAAGAATTCTGTGGTAAATGGATTGAGGCTCATCGTAAGTGTCTTCGTGCAGAGGGGTTCAATGTCTGA

Protein sequence

MIKNDQDLRRAGFESFQDFIAFSLRLHSLRNCDMGGLPVGNSSESKLEQGSAVVKSTPDGKPKKKICCACPDTKKLRDECIVEHGEEFCGKWIEAHRKCLRAEGFNV

Homology

[Close]

BLAST of Cp4.1LG01g08580 vs. Swiss-Prot
Match: CX171_ARATH (Cytochrome c oxidase copper chaperone 1 OS=Arabidopsis thaliana GN=COX17-1 PE=2 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.7e-19
Identity = 41/52 (78.85%), Postives = 46/52 (88.46%), Query Frame = 1


Query: 56  STPDGKPKKKICCACPDTKKLRDECIVEHGEEFCGKWIEAHRKCLRAEGFNV 108
           ++ + KPKK+ICCACPDTKKLRDECIVEHGE  C KWIEAH+ CLRAEGFNV
Sbjct: 23  ASAETKPKKRICCACPDTKKLRDECIVEHGESACTKWIEAHKICLRAEGFNV 74

[Close]

BLAST of Cp4.1LG01g08580 vs. Swiss-Prot
Match: CX172_ARATH (Cytochrome c oxidase copper chaperone 2 OS=Arabidopsis thaliana GN=COX17-2 PE=3 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.1e-18
Identity = 48/74 (64.86%), Postives = 56/74 (75.68%), Query Frame = 1


Query: 34  MGGLPVGNSSESKLEQGSAVVKSTPDGKPKKKICCACPDTKKLRDECIVEHGEEFCGKWI 93
           M GL   +S+ S L++ S  V +T + KPKK+ICCACPDTKKLRDECIVEHGE  C KWI
Sbjct: 1   MSGLQAQDSACS-LDKPSKDVVAT-ETKPKKRICCACPDTKKLRDECIVEHGESACTKWI 60

Query: 94  EAHRKCLRAEGFNV 108
           EAH  CLR+EGF V
Sbjct: 61  EAHILCLRSEGFKV 72

[Close]

BLAST of Cp4.1LG01g08580 vs. Swiss-Prot
Match: COX17_DICDI (Cytochrome c oxidase copper chaperone OS=Dictyostelium discoideum GN=cox17 PE=3 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.8e-13
Identity = 33/52 (63.46%), Postives = 40/52 (76.92%), Query Frame = 1


Query: 56  STPDGKPKKKICCACPDTKKLRDECIVEHGEEFCGKWIEAHRKCLRAEGFNV 108
           +T    PKKK+CCACP+TKK+RDECIV +GEE C   IE H+ CLR EGF+V
Sbjct: 9   TTEVAAPKKKMCCACPETKKVRDECIVANGEEKCAALIELHKVCLRKEGFDV 60

[Close]

BLAST of Cp4.1LG01g08580 vs. Swiss-Prot
Match: COX17_PIG (Cytochrome c oxidase copper chaperone OS=Sus scrofa GN=COX17 PE=1 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 6.8e-13
Identity = 32/59 (54.24%), Postives = 43/59 (72.88%), Query Frame = 1


Query: 51  SAVVKSTPDGKPKK--KICCACPDTKKLRDECIVEHGEEFCGKWIEAHRKCLRAEGFNV 108
           +A + + P+ + KK  K CCACP+TKK RD CI+E GEE CG  IEAH++C+RA GF +
Sbjct: 4   AAAIPAPPESQEKKPLKPCCACPETKKARDACIIEKGEEHCGHLIEAHKECMRALGFKI 62

[Close]

BLAST of Cp4.1LG01g08580 vs. Swiss-Prot
Match: COX17_MOUSE (Cytochrome c oxidase copper chaperone OS=Mus musculus GN=Cox17 PE=1 SV=2)

HSP 1 Score: 72.8 bits (177), Expect = 2.6e-12
Identity = 32/59 (54.24%), Postives = 42/59 (71.19%), Query Frame = 1


Query: 51  SAVVKSTPDGKPKK--KICCACPDTKKLRDECIVEHGEEFCGKWIEAHRKCLRAEGFNV 108
           +A   + P+ + KK  K CCACP+TKK RD CI+E GEE CG  IEAH++C+RA GF +
Sbjct: 5   AAASPAPPEAQEKKPLKPCCACPETKKARDACIIEKGEEHCGHLIEAHKECMRALGFKI 63

[Close]

BLAST of Cp4.1LG01g08580 vs. TrEMBL
Match: A0A0A0L5D1_CUCSA (Cytochrome c oxidase copper chaperone OS=Cucumis sativus GN=Csa_3G105960 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 2.3e-31
Identity = 68/80 (85.00%), Postives = 70/80 (87.50%), Query Frame = 1


Query: 34  MGGLPVGNSS------ESKLEQGSAVVKSTPDGKPKKKICCACPDTKKLRDECIVEHGEE 93
           MGGLPV NSS      ESKL+Q S V+KSTPDGKPKKKICCACPDTKKLRDECIVEHGEE
Sbjct: 1   MGGLPVVNSSSAIALPESKLDQASTVIKSTPDGKPKKKICCACPDTKKLRDECIVEHGEE 60

Query: 94  FCGKWIEAHRKCLRAEGFNV 108
            CGKWIEAHRKCLRAEGFNV
Sbjct: 61  ACGKWIEAHRKCLRAEGFNV 80

[Close]

BLAST of Cp4.1LG01g08580 vs. TrEMBL
Match: A0A061F8G8_THECC (Cytochrome C oxidase copper chaperone isoform 2 (Fragment) OS=Theobroma cacao GN=TCM_031514 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 1.6e-24
Identity = 65/102 (63.73%), Postives = 73/102 (71.57%), Query Frame = 1


Query: 11  AGFESFQDFIAFSLRLHSLRNCDMGGLPVGNSSE-----SKLEQGSAVVKSTPDGKPKKK 70
           AGFES    + F++    L    MGGLP+ N+S      S+  Q SAV  S P+ KPKKK
Sbjct: 10  AGFES-PVCLKFNISYIDLLPGRMGGLPMQNTSALALPGSQQNQVSAVT-SGPESKPKKK 69

Query: 71  ICCACPDTKKLRDECIVEHGEEFCGKWIEAHRKCLRAEGFNV 108
           ICCACP+TKKLRDECIVEHGEE C KWIEAHRKCLRAEGFNV
Sbjct: 70  ICCACPETKKLRDECIVEHGEEACAKWIEAHRKCLRAEGFNV 109

[Close]

BLAST of Cp4.1LG01g08580 vs. TrEMBL
Match: B9T0E6_RICCO (Cytochrome c oxidase copper chaperone, putative OS=Ricinus communis GN=RCOM_0507800 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 2.7e-24
Identity = 55/80 (68.75%), Postives = 63/80 (78.75%), Query Frame = 1


Query: 34  MGGLPVGNSSE------SKLEQGSAVVKSTPDGKPKKKICCACPDTKKLRDECIVEHGEE 93
           MGGLP+ ++S       S+  +GSA+  S P+ KPKKKICCACPDTKKLRDECIVEHGE 
Sbjct: 1   MGGLPLQSASSTLALSGSEQNKGSAITPSVPESKPKKKICCACPDTKKLRDECIVEHGES 60

Query: 94  FCGKWIEAHRKCLRAEGFNV 108
            C KWIEAHR+CLRAEGFNV
Sbjct: 61  ACAKWIEAHRQCLRAEGFNV 80

[Close]

BLAST of Cp4.1LG01g08580 vs. TrEMBL
Match: A0A067JW50_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20993 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 4.6e-24
Identity = 55/80 (68.75%), Postives = 63/80 (78.75%), Query Frame = 1


Query: 34  MGGLPVGNSSE------SKLEQGSAVVKSTPDGKPKKKICCACPDTKKLRDECIVEHGEE 93
           MGGLP+ N+S       S+  +GSA+  S P+ KPKKKICCACP+TKKLRDECIVEHGE 
Sbjct: 1   MGGLPLQNASSTLALPGSEQNKGSAITTSLPETKPKKKICCACPETKKLRDECIVEHGES 60

Query: 94  FCGKWIEAHRKCLRAEGFNV 108
            C KWIEAHR+CLRAEGFNV
Sbjct: 61  ACAKWIEAHRQCLRAEGFNV 80

[Close]

BLAST of Cp4.1LG01g08580 vs. TrEMBL
Match: V4ULF0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10010072mg PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.3e-23
Identity = 56/80 (70.00%), Postives = 62/80 (77.50%), Query Frame = 1


Query: 34  MGGLPVGNSSE------SKLEQGSAVVKSTPDGKPKKKICCACPDTKKLRDECIVEHGEE 93
           MGGLP+ ++S       S+  QG  V KS  + KPKKKICCACP+TKKLRDECIVEHGEE
Sbjct: 1   MGGLPLQDASSTLALPGSQPNQGLEVTKSGTESKPKKKICCACPETKKLRDECIVEHGEE 60

Query: 94  FCGKWIEAHRKCLRAEGFNV 108
            C KWIEAHRKCLRAEGFNV
Sbjct: 61  ACAKWIEAHRKCLRAEGFNV 80

[Close]

BLAST of Cp4.1LG01g08580 vs. TAIR10
Match: AT3G15352.1 (AT3G15352.1 cytochrome c oxidase 17)

HSP 1 Score: 96.7 bits (239), Expect = 9.4e-21
Identity = 41/52 (78.85%), Postives = 46/52 (88.46%), Query Frame = 1


Query: 56  STPDGKPKKKICCACPDTKKLRDECIVEHGEEFCGKWIEAHRKCLRAEGFNV 108
           ++ + KPKK+ICCACPDTKKLRDECIVEHGE  C KWIEAH+ CLRAEGFNV
Sbjct: 23  ASAETKPKKRICCACPDTKKLRDECIVEHGESACTKWIEAHKICLRAEGFNV 74

[Close]

BLAST of Cp4.1LG01g08580 vs. TAIR10
Match: AT1G53030.1 (AT1G53030.1 Cytochrome C oxidase copper chaperone (COX17))

HSP 1 Score: 94.0 bits (232), Expect = 6.1e-20
Identity = 48/74 (64.86%), Postives = 56/74 (75.68%), Query Frame = 1


Query: 34  MGGLPVGNSSESKLEQGSAVVKSTPDGKPKKKICCACPDTKKLRDECIVEHGEEFCGKWI 93
           M GL   +S+ S L++ S  V +T + KPKK+ICCACPDTKKLRDECIVEHGE  C KWI
Sbjct: 1   MSGLQAQDSACS-LDKPSKDVVAT-ETKPKKRICCACPDTKKLRDECIVEHGESACTKWI 60

Query: 94  EAHRKCLRAEGFNV 108
           EAH  CLR+EGF V
Sbjct: 61  EAHILCLRSEGFKV 72

[Close]

BLAST of Cp4.1LG01g08580 vs. NCBI nr
Match: gi|449431844|ref|XP_004133710.1| (PREDICTED: cytochrome c oxidase copper chaperone 2-like [Cucumis sativus])

HSP 1 Score: 142.9 bits (359), Expect = 3.3e-31
Identity = 68/80 (85.00%), Postives = 70/80 (87.50%), Query Frame = 1


Query: 34  MGGLPVGNSS------ESKLEQGSAVVKSTPDGKPKKKICCACPDTKKLRDECIVEHGEE 93
           MGGLPV NSS      ESKL+Q S V+KSTPDGKPKKKICCACPDTKKLRDECIVEHGEE
Sbjct: 1   MGGLPVVNSSSAIALPESKLDQASTVIKSTPDGKPKKKICCACPDTKKLRDECIVEHGEE 60

Query: 94  FCGKWIEAHRKCLRAEGFNV 108
            CGKWIEAHRKCLRAEGFNV
Sbjct: 61  ACGKWIEAHRKCLRAEGFNV 80

[Close]

BLAST of Cp4.1LG01g08580 vs. NCBI nr
Match: gi|659102681|ref|XP_008452259.1| (PREDICTED: LOW QUALITY PROTEIN: cytochrome c oxidase copper chaperone 2-like [Cucumis melo])

HSP 1 Score: 127.1 bits (318), Expect = 1.8e-26
Identity = 65/80 (81.25%), Postives = 66/80 (82.50%), Query Frame = 1


Query: 34  MGGLPVGNSS------ESKLEQGSAVVKSTPDGKPKKKICCACPDTKKLRDECIVEHGEE 93
           MGGLPV NSS      ESKL+Q S VVKS P  K KKKICCACPDTKKLRDECIVEHGEE
Sbjct: 1   MGGLPVVNSSSAIALPESKLDQASTVVKS-PRWKTKKKICCACPDTKKLRDECIVEHGEE 60

Query: 94  FCGKWIEAHRKCLRAEGFNV 108
            CGKWIEAHRKCLRAEGFNV
Sbjct: 61  ACGKWIEAHRKCLRAEGFNV 79

[Close]

BLAST of Cp4.1LG01g08580 vs. NCBI nr
Match: gi|590609231|ref|XP_007021482.1| (Cytochrome C oxidase copper chaperone isoform 2, partial [Theobroma cacao])

HSP 1 Score: 120.2 bits (300), Expect = 2.3e-24
Identity = 65/102 (63.73%), Postives = 73/102 (71.57%), Query Frame = 1


Query: 11  AGFESFQDFIAFSLRLHSLRNCDMGGLPVGNSSE-----SKLEQGSAVVKSTPDGKPKKK 70
           AGFES    + F++    L    MGGLP+ N+S      S+  Q SAV  S P+ KPKKK
Sbjct: 10  AGFES-PVCLKFNISYIDLLPGRMGGLPMQNTSALALPGSQQNQVSAVT-SGPESKPKKK 69

Query: 71  ICCACPDTKKLRDECIVEHGEEFCGKWIEAHRKCLRAEGFNV 108
           ICCACP+TKKLRDECIVEHGEE C KWIEAHRKCLRAEGFNV
Sbjct: 70  ICCACPETKKLRDECIVEHGEEACAKWIEAHRKCLRAEGFNV 109

[Close]

BLAST of Cp4.1LG01g08580 vs. NCBI nr
Match: gi|1000942083|ref|XP_015582429.1| (PREDICTED: cytochrome c oxidase copper chaperone 1 [Ricinus communis])

HSP 1 Score: 119.4 bits (298), Expect = 3.8e-24
Identity = 55/80 (68.75%), Postives = 63/80 (78.75%), Query Frame = 1


Query: 34  MGGLPVGNSSE------SKLEQGSAVVKSTPDGKPKKKICCACPDTKKLRDECIVEHGEE 93
           MGGLP+ ++S       S+  +GSA+  S P+ KPKKKICCACPDTKKLRDECIVEHGE 
Sbjct: 1   MGGLPLQSASSTLALSGSEQNKGSAITPSVPESKPKKKICCACPDTKKLRDECIVEHGES 60

Query: 94  FCGKWIEAHRKCLRAEGFNV 108
            C KWIEAHR+CLRAEGFNV
Sbjct: 61  ACAKWIEAHRQCLRAEGFNV 80

[Close]

BLAST of Cp4.1LG01g08580 vs. NCBI nr
Match: gi|802716322|ref|XP_012084961.1| (PREDICTED: cytochrome c oxidase copper chaperone 1 [Jatropha curcas])

HSP 1 Score: 118.6 bits (296), Expect = 6.6e-24
Identity = 55/80 (68.75%), Postives = 63/80 (78.75%), Query Frame = 1


Query: 34  MGGLPVGNSSE------SKLEQGSAVVKSTPDGKPKKKICCACPDTKKLRDECIVEHGEE 93
           MGGLP+ N+S       S+  +GSA+  S P+ KPKKKICCACP+TKKLRDECIVEHGE 
Sbjct: 1   MGGLPLQNASSTLALPGSEQNKGSAITTSLPETKPKKKICCACPETKKLRDECIVEHGES 60

Query: 94  FCGKWIEAHRKCLRAEGFNV 108
            C KWIEAHR+CLRAEGFNV
Sbjct: 61  ACAKWIEAHRQCLRAEGFNV 80

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g08580 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CX171_ARATH	1.7e-19	78.85	Cytochrome c oxidase copper chaperone 1 OS=Arabidopsis thaliana GN=COX17-1 PE=2 ...	[more]
CX172_ARATH	1.1e-18	64.86	Cytochrome c oxidase copper chaperone 2 OS=Arabidopsis thaliana GN=COX17-2 PE=3 ...	[more]
COX17_DICDI	1.8e-13	63.46	Cytochrome c oxidase copper chaperone OS=Dictyostelium discoideum GN=cox17 PE=3 ...	[more]
COX17_PIG	6.8e-13	54.24	Cytochrome c oxidase copper chaperone OS=Sus scrofa GN=COX17 PE=1 SV=1	[more]
COX17_MOUSE	2.6e-12	54.24	Cytochrome c oxidase copper chaperone OS=Mus musculus GN=Cox17 PE=1 SV=2	[more]

BLAST of Cp4.1LG01g08580 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5D1_CUCSA	2.3e-31	85.00	Cytochrome c oxidase copper chaperone OS=Cucumis sativus GN=Csa_3G105960 PE=4 SV...	[more]
A0A061F8G8_THECC	1.6e-24	63.73	Cytochrome C oxidase copper chaperone isoform 2 (Fragment) OS=Theobroma cacao GN...	[more]
B9T0E6_RICCO	2.7e-24	68.75	Cytochrome c oxidase copper chaperone, putative OS=Ricinus communis GN=RCOM_0507...	[more]
A0A067JW50_JATCU	4.6e-24	68.75	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20993 PE=4 SV=1	[more]
V4ULF0_9ROSI	1.3e-23	70.00	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10010072mg PE=4 SV=1	[more]

BLAST of Cp4.1LG01g08580 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G15352.1	9.4e-21	78.85	cytochrome c oxidase 17	[more]
AT1G53030.1	6.1e-20	64.86	Cytochrome C oxidase copper chaperone (COX17)	[more]

BLAST of Cp4.1LG01g08580 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449431844\|ref\|XP_004133710.1\|	3.3e-31	85.00	PREDICTED: cytochrome c oxidase copper chaperone 2-like [Cucumis sativus]	[more]
gi\|659102681\|ref\|XP_008452259.1\|	1.8e-26	81.25	PREDICTED: LOW QUALITY PROTEIN: cytochrome c oxidase copper chaperone 2-like [Cu...	[more]
gi\|590609231\|ref\|XP_007021482.1\|	2.3e-24	63.73	Cytochrome C oxidase copper chaperone isoform 2, partial [Theobroma cacao]	[more]
gi\|1000942083\|ref\|XP_015582429.1\|	3.8e-24	68.75	PREDICTED: cytochrome c oxidase copper chaperone 1 [Ricinus communis]	[more]
gi\|802716322\|ref\|XP_012084961.1\|	6.6e-24	68.75	PREDICTED: cytochrome c oxidase copper chaperone 1 [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0016531	copper chaperone activity
GO:0005507	copper ion binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006825	copper ion transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0005758	mitochondrial intermembrane space

Vocabulary: **INTERPRO**
Term	Definition
IPR009069	Cys_alpha_HP_mot_SF
IPR007745	Cyt_c_oxidase_Cu-chaperone

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006825	copper ion transport
cellular_component	GO:0005758	mitochondrial intermembrane space
molecular_function	GO:0016531	copper chaperone activity
molecular_function	GO:0005507	copper ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g08580.1	Cp4.1LG01g08580.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007745	Cytochrome c oxidase copper chaperone	PRODOM	PD014904		coord: 61..107 score: 6.0
IPR007745	Cytochrome c oxidase copper chaperone	PANTHER	PTHR16719	CYTOCHROME C OXIDASE COPPER CHAPERONE	coord: 58..107 score: 6.4
IPR007745	Cytochrome c oxidase copper chaperone	PFAM	PF05051	COX17	coord: 63..107 score: 4.3
IPR009069	Cysteine alpha-hairpin motif superfamily	GENE3D	G3DSA:1.10.810.10		coord: 71..101 score: 2.
IPR009069	Cysteine alpha-hairpin motif superfamily	unknown	SSF47072	Cysteine alpha-hairpin motif	coord: 56..107 score: 3.14

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG01g08580	Cucsa.074780	Cucumber (Gy14) v1	cgycpeB0119
Cp4.1LG01g08580	CmaCh04G009020	Cucurbita maxima (Rimu)	cmacpeB720
Cp4.1LG01g08580	CmoCh04G009690	Cucurbita moschata (Rifu)	cmocpeB673
Cp4.1LG01g08580	Cla011790	Watermelon (97103) v1	cpewmB405
Cp4.1LG01g08580	Csa3G105960	Cucumber (Chinese Long) v2	cpecuB393
Cp4.1LG01g08580	MELO3C016512	Melon (DHL92) v3.5.1	cpemeB409
Cp4.1LG01g08580	ClCG10G006950	Watermelon (Charleston Gray)	cpewcgB349
Cp4.1LG01g08580	CSPI03G06190	Wild cucumber (PI 183967)	cpecpiB392
Cp4.1LG01g08580	Lsi05G007490	Bottle gourd (USVL1VR-Ls)	cpelsiB366
Cp4.1LG01g08580	MELO3C016512.2	Melon (DHL92) v3.6.1	cpemedB482
Cp4.1LG01g08580	CsaV3_3G006320	Cucumber (Chinese Long) v3	cpecucB0491
Cp4.1LG01g08580	Bhi11G000656	Wax gourd	cpewgoB0485
Cp4.1LG01g08580	CsGy3G006290	Cucumber (Gy14) v2	cgybcpeB369
Cp4.1LG01g08580	Carg00020	Silver-seed gourd	carcpeB0938

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG01g08580	Wax gourd	cpewgoB0481
Cp4.1LG01g08580	Wax gourd	cpewgoB0489
Cp4.1LG01g08580	Cucurbita pepo (Zucchini)	cpecpeB233
Cp4.1LG01g08580	Cucurbita maxima (Rimu)	cmacpeB350
Cp4.1LG01g08580	Cucurbita moschata (Rifu)	cmocpeB312
Cp4.1LG01g08580	Bottle gourd (USVL1VR-Ls)	cpelsiB370
Cp4.1LG01g08580	Silver-seed gourd	carcpeB0667