Carg00020 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg00020
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Cytochrome c oxidase copper chaperone
Location	Cucurbita_argyrosperma_scaffold_001 : 81268 .. 85351 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAGCAAGGCAGATGAAGGAGGTGGTGGAGCAGAGTGGGATGTCAGTCACTGTTGGGCTGAGCTGACTCAACTAAAAAATTGCGCTCGGCCCAACTTAAAATAGGTCCGGCCCATTTAAAAGGAGATATTCATATAGGATAACAACAAATATCTAATAAATAATTTAAATAAATAAATAAATAACTGATAAGTTACCATTTGAAACATCATCGACTTATAATTAAACATCAATCTCATTCATAATATAGGTTTGTGTCTTCCGGTAATCATAGATTTGTCTATCATAAGAATACTATAAATAAGACTATATCACACGATCTCACCCAATTGTTGAATTCACATCTTTTAGCTCATTCGAGATTATCTCAACCATTGATGTCATATGTCTATTCTAACCATTGAGATTACACTGTCTAGCTCATTTGAGTTCGTATTTCAATCAGATGTCTCGTGAGCTACTCAATGATGGTTGTCCATAATAACTAACTCCTCTGAGCTTATTTTGATAATTGGTGTTACACGTCCTACTCTATGACTAGTTTATGCTTTCTAGCTCCATTGAGTTTATCCCCAATTATTTCTATTATATGATATTTATTCTATGAGTTTGTCCTAATATCTGAATATACTCAGATTCAGGTAATCTAGTTATATCTTTTGCTGTCCCAATTCATATTATAGAACGATGACGCTTAACCACGGAATCCATCCAACTTTGTCAGTTACGTGGCCGTGTTCTCCTTACTATTCACAAAAGTTGTAAATCTCATTTTCAGGCAACGAGAATGATAAAGAACGATCAAGTGAGTTATGAGTTTATTTATTATCTCATTATTGAAAAAATAAAATATCATAATTATCATAATTATCGTATTTATCGTATTTTCTCCATTAGAGGCCCAGGCCCAGGCCCAGGCCCATAGTAGGAAACTCGCGCGTCCCACTTTCGAGCCCTAATTGACATTTATTTCCCCTTTTGGTTTGGAATCTTGCAACTTTCTCAAATTGCTTTGCTTTGACGCTGTCCAAATCCATATTCGTCTTTCTTCGGCTCTGGGTTTCTCCAGGATCTTCGGCGTGCGAGGGTCGAAAGGTAAGCTTCGAATTTCTCTGCTTCTTGGTCTCCCTACCGCTTTCTTGCACTTCCTAGCTGGACTATTCGCCTTTTCTTACTTTTTTTTTTCTTTTCAGTAAACAGGATTGTTCCGCTTAATTTTCTCTTTCCGATTGATTGGTTCGGTTGTTTGATGGAAGGTCGATTAAGATTTTTTTTTCCTTCTGGAATGGTTGGGTTGGGGTGTTTTGCATGTTTGTCACTGGCGAAGAGAGTTGTTGTGGAGGTCTCTACTTCTGGTTTTTTATTGGATGACTTTCTTCGATTGCAAGTAAAGAATAAAATTTGGGTTTTGAAGGATTTTATGATTTAGTAGCCGGTGATTAAGTAAGAGTATAGTGATTCGGTTGGGGTCTTTGGATTGATGAATGGTTTCTACTTCTATATATATAAATCCCCTTATTGGAAAACTTTCTCTGCTTAACCAATAGTGGAATTTTGTTTAGAAAGCATAACATGATTCAGTTTGCCTGTGATCAAGTAAGATTTTTTTTACCCATAAGCCTTCACTATGATTTAATTCGATGCTCTTCATTCTCACGTTCTTCTGCTTGCAGCTTTCAGGATTTCATTGCCTTTTCCTTTAGACTGCATTCCTTGAGAAATTGTGACATGGGTGGGCTACCTGTTGGAAATTCTTCGGAGTCCAAACTTGAGCAGGGATCAGTAGTGGTCAAGTCTACCCCAGATGGAAAACCAAAAAAGAAGATTTGTTGTGCCTGTCCTGATACTAAGAAGCTAAGAGATGAGTGCATTGTAGAACATGGTGAAGAATTCTGTGGTAAATGGATTGAGGCTCATCGTAAGTGTCTTCGTGCAGAGGGGTTCAATGTCTGAACTTGATAAGCCAATCATATGAATTATTTGATTTTCTGCTAGTGTACAATTTACCATTTGAGGTATACATAGATAACAGAGAAAATTGAGAAATAAAGTGAGCGAGAGAGTAGGCATAGCCAAAGCTGCAGTGCAGCAAGTACAATTTGGCTGCGTATTTTTGTTGACTTGGGCCTTTGTTCATGTATTAACTTCCTCCTGTTATTCATAATTTCTTACTATCTCTTCTTTATTTGATGCCCAACAAATTCTGTATCAATATCATGTGTTCTAAATTTGTGATTCTCGCCTGATGTTGAATTGGTGGATCTGAAGTTTTGAACATCGAATATTGTAGTAGTAGACTTATAGTGATTAAATCTTGTATTATATCAAGGTAAGATAACCACAATGGGTTTGTCCGAGTCCGACAGAGAAAGGACAAGGTCTTAATGTACATGTCTGATGTCTTTTGAGGTCAAGTGGTACACTTGTTAGAGTTTCTCTCAAGGCCGGTGATTTTGGGTCCTCGGGCATTCCTGCCTTTATGTATCATCATAGCATCTGCTAATAGCTTGTTTTTTCATCCTTTATTTTCTGAGTGTAAAGATGCAATTGACATGTCTTTGGATGTTATTAATGAGTTGTTGTTGATAAGATACGGTTTCCTACCTAAGAAAAGAGAATTAAAAAAATGGTCAAGAAGATACTGTGGTCTGTGATGCACTATGTATTCTGGGCTTGATTTGAATCAATTGTTTGCCAGGTTTACTATTTTGAGGAAATTGTTCTATTCGATTTGTGGAGTTCTATAGATTTATTGTATTACACTACTCTTAAAAGTATTGAAGCCCTTCTAGATTGTTGCCTCTTTGTAATTTGTAGTCAAATTGAATCAAGGATGAAAAGAACCACAATAAAAATGGAAGGAGAGGGAGAGTGTACTAGTATATAACTTATCCATTAATAGTTAACCCATGGCCACAGAAGTGACCAGCATTACATGACTATGGATGAAGAACAGAAGTAGATATTATTCGTAACACACCTCTAGCTAAGCACAGAGGTTTTGAACATAATAGGACACATTTCAAACACAGCTACATTATTCCTGGCTTTATATAACTGTGTTAATGGAAACAACAGGTGTATGTGTTCATTTGCCGCAGTGGCAGTCCTTGCAACTGCAGGGGTTGCAGCTGCACTTGTCATTGTGCTCGGCCGCTGGGACGTCCATGTCTATGGCGTCAAAGTAGCTGCAGAACCAAGAGATTCATTGTTAGATGCCAGGTACTGTCAAGCACTTTTAGTCATTAACTTGTTGAGATTTTTTGTCTCTGCTCCACTCTTTTTTCCTAAATCTAAACATACTTTTGTTCATGATTCATTAAAGTTCTCAATGCGTTTATATCCTTTGAATTTGATTTTTCATGAAAAAAAATGGGCTCTAAATCAGCTGGTTTCAAGAAAGTATATGCACGATGAGTTGAAAAAATTACCTCTTCTCATTCTCCATGATGACAGCGCCATAGCTGTTCCCTTTTTTCCTGTCATTATAGAGCACGTCATTAACATAGGAATGAATTCGAATGTGCAAACTCTTCGATCCGTTTTTTTTTTTTACTAGTAATTTCTTACTTTTGATTTGGTCTTATTGTGAAGGAAAAGAAAGAAGAAGTGGTTTTATGATTATCTTATTTGCAGCGACACTATAATTTGGATTCGAACTTTTAGTTTCACCCCAATATAGTTTATTGCCCCATCTGCTTCCCTTTATAGCATCAAACAAACTGTCATAATTGGGAGGGCAACCAAGGACCATATTGACAGACTTGCTATATTAAGACAATTTCTGAGAGGGCAACAGAATCATAGCTTTGAGACAAGCAAGCTCTTGATGAGATTTGCTGCAAAGTTCGTAGGAAAACCAAAAAAAAAAAAAAAAAAAAATACTTACACGCAGTTGCTGCTGTCGGAGCAGTCGCAGTTGCCGCACTTGCCTGACATGGTGAAGAAGCTAGAGAAGTTGTAGGAGAACGAAAAACTGATAGCTTATGGAACTTTTTTTGGCTTATGATCTCTAAGTTTTGAGTATGGCTGTGTATTTATAATGCAGGGCCATGGCGTTGGCATTGGCAAGGAGTGGCTGA

mRNA sequence

ATGAGAGCAAGGCAGATGAAGGAGGTGGTGGAGCAGAGTGGGATGTCAGTCACTGATCTTCGGCGTGCGAGGGTCGAAAGCTTTCAGGATTTCATTGCCTTTTCCTTTAGACTGCATTCCTTGAGAAATTGTGACATGGGTGGGCTACCTGTTGGAAATTCTTCGGAGTCCAAACTTGAGCAGGGATCAGTAGTGGTCAAGTCTACCCCAGATGGAAAACCAAAAAAGAAGATTTGTTGTGCCTGTCCTGATACTAAGAAGCTAAGAGATGAGTGCATTGTAGAACATGGTGAAGAATTCTGTGGTAAATGGATTGAGGCTCATCTGGCAGTCCTTGCAACTGCAGGGGTTGCAGCTGCACTTGTCATTGTGCTCGGCCGCTGGGACGTCCATGTCTATGGCGTCAAAGTAGCTGCAGAACCAAGAGATTCATTGTTAGATGCCAGGGCCATGGCGTTGGCATTGGCAAGGAGTGGCTGA

Coding sequence (CDS)

ATGAGAGCAAGGCAGATGAAGGAGGTGGTGGAGCAGAGTGGGATGTCAGTCACTGATCTTCGGCGTGCGAGGGTCGAAAGCTTTCAGGATTTCATTGCCTTTTCCTTTAGACTGCATTCCTTGAGAAATTGTGACATGGGTGGGCTACCTGTTGGAAATTCTTCGGAGTCCAAACTTGAGCAGGGATCAGTAGTGGTCAAGTCTACCCCAGATGGAAAACCAAAAAAGAAGATTTGTTGTGCCTGTCCTGATACTAAGAAGCTAAGAGATGAGTGCATTGTAGAACATGGTGAAGAATTCTGTGGTAAATGGATTGAGGCTCATCTGGCAGTCCTTGCAACTGCAGGGGTTGCAGCTGCACTTGTCATTGTGCTCGGCCGCTGGGACGTCCATGTCTATGGCGTCAAAGTAGCTGCAGAACCAAGAGATTCATTGTTAGATGCCAGGGCCATGGCGTTGGCATTGGCAAGGAGTGGCTGA

Protein sequence

MRARQMKEVVEQSGMSVTDLRRARVESFQDFIAFSFRLHSLRNCDMGGLPVGNSSESKLEQGSVVVKSTPDGKPKKKICCACPDTKKLRDECIVEHGEEFCGKWIEAHLAVLATAGVAAALVIVLGRWDVHVYGVKVAAEPRDSLLDARAMALALARSG

Homology

[Close]

BLAST of Carg00020 vs. NCBI nr
Match: XP_022943031.1 (cytochrome c oxidase copper chaperone 2-like [Cucurbita moschata] >XP_022943032.1 cytochrome c oxidase copper chaperone 2-like [Cucurbita moschata] >XP_022977644.1 cytochrome c oxidase copper chaperone 2 [Cucurbita maxima] >XP_022977652.1 cytochrome c oxidase copper chaperone 2 [Cucurbita maxima] >XP_022977660.1 cytochrome c oxidase copper chaperone 2 [Cucurbita maxima] >XP_023524945.1 cytochrome c oxidase copper chaperone 2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 137.9 bits (346), Expect = 3.0e-29
Identity = 64/71 (90.14%), Postives = 64/71 (90.14%), Query Frame = 0


Query: 46  MGGLPVGNSSESKLEQGSVVVKSTPDGKPKKKICCACPDTKKLRDECIVEHGEEFCGKWI 105
           MGGLPVGNSSESKLEQGS VVKSTPDGKPKKKICCACPDTKKLRDECIVEHGEEFCGKWI
Sbjct: 1   MGGLPVGNSSESKLEQGSAVVKSTPDGKPKKKICCACPDTKKLRDECIVEHGEEFCGKWI 60

Query: 106 EAHLAVLATAG 117
           EAH   L   G
Sbjct: 61  EAHRKCLRAEG 71

[Close]

BLAST of Carg00020 vs. NCBI nr
Match: XP_004133710.1 (PREDICTED: cytochrome c oxidase copper chaperone 2-like [Cucumis sativus] >XP_004133711.1 PREDICTED: cytochrome c oxidase copper chaperone 2-like [Cucumis sativus] >XP_011650564.1 PREDICTED: cytochrome c oxidase copper chaperone 2-like [Cucumis sativus] >KGN56244.1 Cytochrome c oxidase copper chaperone [Cucumis sativus])

HSP 1 Score: 120.9 bits (302), Expect = 3.8e-24
Identity = 59/77 (76.62%), Postives = 61/77 (79.22%), Query Frame = 0


Query: 46  MGGLPVGNSS------ESKLEQGSVVVKSTPDGKPKKKICCACPDTKKLRDECIVEHGEE 105
           MGGLPV NSS      ESKL+Q S V+KSTPDGKPKKKICCACPDTKKLRDECIVEHGEE
Sbjct: 1   MGGLPVVNSSSAIALPESKLDQASTVIKSTPDGKPKKKICCACPDTKKLRDECIVEHGEE 60

Query: 106 FCGKWIEAHLAVLATAG 117
            CGKWIEAH   L   G
Sbjct: 61  ACGKWIEAHRKCLRAEG 77

[Close]

BLAST of Carg00020 vs. NCBI nr
Match: XP_022142851.1 (cytochrome c oxidase copper chaperone 1-like [Momordica charantia] >XP_022142852.1 cytochrome c oxidase copper chaperone 1-like [Momordica charantia])

HSP 1 Score: 119.8 bits (299), Expect = 8.5e-24
Identity = 58/77 (75.32%), Postives = 61/77 (79.22%), Query Frame = 0


Query: 46  MGGLPVGNSS------ESKLEQGSVVVKSTPDGKPKKKICCACPDTKKLRDECIVEHGEE 105
           MGGLPVGN S      ESKL+QGS VVKST DGKPKK+ICCACP+TKKLRDECIVEHGEE
Sbjct: 1   MGGLPVGNGSSALALPESKLDQGSAVVKSTTDGKPKKRICCACPETKKLRDECIVEHGEE 60

Query: 106 FCGKWIEAHLAVLATAG 117
            CGKWIEAH   L   G
Sbjct: 61  ACGKWIEAHRKCLRAEG 77

[Close]

BLAST of Carg00020 vs. NCBI nr
Match: XP_016901211.1 (PREDICTED: LOW QUALITY PROTEIN: cytochrome c oxidase copper chaperone 2 [Cucumis melo])

HSP 1 Score: 119.0 bits (297), Expect = 1.5e-23
Identity = 59/77 (76.62%), Postives = 60/77 (77.92%), Query Frame = 0


Query: 46  MGGLPVGNSS------ESKLEQGSVVVKSTPDGKPKKKICCACPDTKKLRDECIVEHGEE 105
           MGGLPV NSS      ESKL+Q S VVKSTPDGKP KKICCACPDTKKLRDECIVEHGEE
Sbjct: 1   MGGLPVVNSSSAIALPESKLDQASTVVKSTPDGKPXKKICCACPDTKKLRDECIVEHGEE 60

Query: 106 FCGKWIEAHLAVLATAG 117
            CGKWIEAH   L   G
Sbjct: 61  ACGKWIEAHRKCLRAEG 77

[Close]

BLAST of Carg00020 vs. NCBI nr
Match: PON91164.1 (Cytochrome c oxidase copper chaperone [Trema orientalis])

HSP 1 Score: 102.4 bits (254), Expect = 1.4e-18
Identity = 50/77 (64.94%), Postives = 54/77 (70.13%), Query Frame = 0


Query: 46  MGGLPVGNSSE------SKLEQGSVVVKSTPDGKPKKKICCACPDTKKLRDECIVEHGEE 105
           MGGLP  N+S       S+   GS + K  P+ KPKKKICCACPDTKKLRDECIVEHGEE
Sbjct: 1   MGGLPTDNTSSTLALLGSQKNHGSPINKPGPETKPKKKICCACPDTKKLRDECIVEHGEE 60

Query: 106 FCGKWIEAHLAVLATAG 117
            CGKWIEAHL  L   G
Sbjct: 61  ACGKWIEAHLKCLRAEG 77

[Close]

BLAST of Carg00020 vs. TAIR10
Match: AT1G53030.1 (Cytochrome C oxidase copper chaperone (COX17))

HSP 1 Score: 82.8 bits (203), Expect = 2.1e-16
Identity = 43/71 (60.56%), Postives = 52/71 (73.24%), Query Frame = 0


Query: 46  MGGLPVGNSSESKLEQGSVVVKSTPDGKPKKKICCACPDTKKLRDECIVEHGEEFCGKWI 105
           M GL   +S+ S L++ S  V +T + KPKK+ICCACPDTKKLRDECIVEHGE  C KWI
Sbjct: 1   MSGLQAQDSACS-LDKPSKDVVAT-ETKPKKRICCACPDTKKLRDECIVEHGESACTKWI 60

Query: 106 EAHLAVLATAG 117
           EAH+  L + G
Sbjct: 61  EAHILCLRSEG 69

[Close]

BLAST of Carg00020 vs. TAIR10
Match: AT3G15352.1 (cytochrome c oxidase 17)

HSP 1 Score: 78.6 bits (192), Expect = 3.9e-15
Identity = 34/49 (69.39%), Postives = 38/49 (77.55%), Query Frame = 0


Query: 68  STPDGKPKKKICCACPDTKKLRDECIVEHGEEFCGKWIEAHLAVLATAG 117
           ++ + KPKK+ICCACPDTKKLRDECIVEHGE  C KWIEAH   L   G
Sbjct: 23  ASAETKPKKRICCACPDTKKLRDECIVEHGESACTKWIEAHKICLRAEG 71

[Close]

BLAST of Carg00020 vs. Swiss-Prot
Match: sp|Q94FT1|CX172_ARATH (Cytochrome c oxidase copper chaperone 2 OS=Arabidopsis thaliana OX=3702 GN=COX17-2 PE=3 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 3.8e-15
Identity = 43/71 (60.56%), Postives = 52/71 (73.24%), Query Frame = 0


Query: 46  MGGLPVGNSSESKLEQGSVVVKSTPDGKPKKKICCACPDTKKLRDECIVEHGEEFCGKWI 105
           M GL   +S+ S L++ S  V +T + KPKK+ICCACPDTKKLRDECIVEHGE  C KWI
Sbjct: 1   MSGLQAQDSACS-LDKPSKDVVAT-ETKPKKRICCACPDTKKLRDECIVEHGESACTKWI 60

Query: 106 EAHLAVLATAG 117
           EAH+  L + G
Sbjct: 61  EAHILCLRSEG 69

[Close]

BLAST of Carg00020 vs. Swiss-Prot
Match: sp|Q9LJQ9|CX171_ARATH (Cytochrome c oxidase copper chaperone 1 OS=Arabidopsis thaliana OX=3702 GN=COX17-1 PE=2 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 7.1e-14
Identity = 34/49 (69.39%), Postives = 38/49 (77.55%), Query Frame = 0


Query: 68  STPDGKPKKKICCACPDTKKLRDECIVEHGEEFCGKWIEAHLAVLATAG 117
           ++ + KPKK+ICCACPDTKKLRDECIVEHGE  C KWIEAH   L   G
Sbjct: 23  ASAETKPKKRICCACPDTKKLRDECIVEHGESACTKWIEAHKICLRAEG 71

[Close]

BLAST of Carg00020 vs. Swiss-Prot
Match: sp|Q54ID0|COX17_DICDI (Cytochrome c oxidase copper chaperone OS=Dictyostelium discoideum OX=44689 GN=cox17 PE=3 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 6.9e-09
Identity = 28/49 (57.14%), Postives = 33/49 (67.35%), Query Frame = 0


Query: 68  STPDGKPKKKICCACPDTKKLRDECIVEHGEEFCGKWIEAHLAVLATAG 117
           +T    PKKK+CCACP+TKK+RDECIV +GEE C   IE H   L   G
Sbjct: 9   TTEVAAPKKKMCCACPETKKVRDECIVANGEEKCAALIELHKVCLRKEG 57

[Close]

BLAST of Carg00020 vs. Swiss-Prot
Match: sp|P81045|COX17_PIG (Cytochrome c oxidase copper chaperone OS=Sus scrofa OX=9823 GN=COX17 PE=1 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 4.5e-08
Identity = 27/56 (48.21%), Postives = 35/56 (62.50%), Query Frame = 0


Query: 63  SVVVKSTPDGKPKK--KICCACPDTKKLRDECIVEHGEEFCGKWIEAHLAVLATAG 117
           +  + + P+ + KK  K CCACP+TKK RD CI+E GEE CG  IEAH   +   G
Sbjct: 4   AAAIPAPPESQEKKPLKPCCACPETKKARDACIIEKGEEHCGHLIEAHKECMRALG 59

[Close]

BLAST of Carg00020 vs. Swiss-Prot
Match: sp|Q14061|COX17_HUMAN (Cytochrome c oxidase copper chaperone OS=Homo sapiens OX=9606 GN=COX17 PE=1 SV=2)

HSP 1 Score: 58.2 bits (139), Expect = 1.0e-07
Identity = 27/49 (55.10%), Postives = 32/49 (65.31%), Query Frame = 0


Query: 70  PDGKPKK--KICCACPDTKKLRDECIVEHGEEFCGKWIEAHLAVLATAG 117
           P+ + KK  K CCACP+TKK RD CI+E GEE CG  IEAH   +   G
Sbjct: 12  PESQEKKPLKPCCACPETKKARDACIIEKGEEHCGHLIEAHKECMRALG 60

[Close]

BLAST of Carg00020 vs. TrEMBL
Match: tr|A0A0A0L5D1|A0A0A0L5D1_CUCSA (Cytochrome c oxidase copper chaperone OS=Cucumis sativus OX=3659 GN=Csa_3G105960 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 2.5e-24
Identity = 59/77 (76.62%), Postives = 61/77 (79.22%), Query Frame = 0


Query: 46  MGGLPVGNSS------ESKLEQGSVVVKSTPDGKPKKKICCACPDTKKLRDECIVEHGEE 105
           MGGLPV NSS      ESKL+Q S V+KSTPDGKPKKKICCACPDTKKLRDECIVEHGEE
Sbjct: 1   MGGLPVVNSSSAIALPESKLDQASTVIKSTPDGKPKKKICCACPDTKKLRDECIVEHGEE 60

Query: 106 FCGKWIEAHLAVLATAG 117
            CGKWIEAH   L   G
Sbjct: 61  ACGKWIEAHRKCLRAEG 77

[Close]

BLAST of Carg00020 vs. TrEMBL
Match: tr|A0A1S4DYZ5|A0A1S4DYZ5_CUCME (LOW QUALITY PROTEIN: cytochrome c oxidase copper chaperone 2 OS=Cucumis melo OX=3656 GN=LOC103493331 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 9.6e-24
Identity = 59/77 (76.62%), Postives = 60/77 (77.92%), Query Frame = 0


Query: 46  MGGLPVGNSS------ESKLEQGSVVVKSTPDGKPKKKICCACPDTKKLRDECIVEHGEE 105
           MGGLPV NSS      ESKL+Q S VVKSTPDGKP KKICCACPDTKKLRDECIVEHGEE
Sbjct: 1   MGGLPVVNSSSAIALPESKLDQASTVVKSTPDGKPXKKICCACPDTKKLRDECIVEHGEE 60

Query: 106 FCGKWIEAHLAVLATAG 117
            CGKWIEAH   L   G
Sbjct: 61  ACGKWIEAHRKCLRAEG 77

[Close]

BLAST of Carg00020 vs. TrEMBL
Match: tr|A0A2P5F045|A0A2P5F045_9ROSA (Cytochrome c oxidase copper chaperone OS=Trema orientalis OX=63057 GN=TorRG33x02_129800 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 9.3e-19
Identity = 50/77 (64.94%), Postives = 54/77 (70.13%), Query Frame = 0


Query: 46  MGGLPVGNSSE------SKLEQGSVVVKSTPDGKPKKKICCACPDTKKLRDECIVEHGEE 105
           MGGLP  N+S       S+   GS + K  P+ KPKKKICCACPDTKKLRDECIVEHGEE
Sbjct: 1   MGGLPTDNTSSTLALLGSQKNHGSPINKPGPETKPKKKICCACPDTKKLRDECIVEHGEE 60

Query: 106 FCGKWIEAHLAVLATAG 117
            CGKWIEAHL  L   G
Sbjct: 61  ACGKWIEAHLKCLRAEG 77

[Close]

BLAST of Carg00020 vs. TrEMBL
Match: tr|A0A2G9HLC9|A0A2G9HLC9_9LAMI (Cytochrome c oxidase assembly protein/Cu2+ chaperone COX17 OS=Handroanthus impetiginosus OX=429701 GN=CDL12_08998 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 4.6e-18
Identity = 48/76 (63.16%), Postives = 56/76 (73.68%), Query Frame = 0


Query: 46  MGGLPVGNSS-----ESKLEQGSVVVKSTPDGKPKKKICCACPDTKKLRDECIVEHGEEF 105
           MGGLP+ +SS     +S+ ++GS +V S PD KPKK+ICCACPDTKKLRDECIVEHGE  
Sbjct: 1   MGGLPIQSSSSVISVQSQKDKGSTIVASGPDLKPKKRICCACPDTKKLRDECIVEHGESA 60

Query: 106 CGKWIEAHLAVLATAG 117
           C KWIEAH   L   G
Sbjct: 61  CEKWIEAHRKCLRAEG 76

[Close]

BLAST of Carg00020 vs. TrEMBL
Match: tr|A0A2P5D3Y5|A0A2P5D3Y5_PARAD (Cytochrome c oxidase copper chaperone OS=Parasponia andersonii OX=3476 GN=PanWU01x14_098160 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 4.6e-18
Identity = 49/77 (63.64%), Postives = 53/77 (68.83%), Query Frame = 0


Query: 46  MGGLPVGNSSE------SKLEQGSVVVKSTPDGKPKKKICCACPDTKKLRDECIVEHGEE 105
           MGGLP  N+S       S+   GS + K  P+ KPKKKICCACPDTKKLRDECIVEHGEE
Sbjct: 1   MGGLPTDNTSSTLALLGSQKNHGSPINKPGPETKPKKKICCACPDTKKLRDECIVEHGEE 60

Query: 106 FCGKWIEAHLAVLATAG 117
            CGKWIEAH   L   G
Sbjct: 61  ACGKWIEAHRKCLRAEG 77

The following BLAST results are available for this feature:

BLAST of Carg00020 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022943031.1	3.0e-29	90.14	cytochrome c oxidase copper chaperone 2-like [Cucurbita moschata] >XP_022943032....	[more]
XP_004133710.1	3.8e-24	76.62	PREDICTED: cytochrome c oxidase copper chaperone 2-like [Cucumis sativus] >XP_00...	[more]
XP_022142851.1	8.5e-24	75.32	cytochrome c oxidase copper chaperone 1-like [Momordica charantia] >XP_022142852...	[more]
XP_016901211.1	1.5e-23	76.62	PREDICTED: LOW QUALITY PROTEIN: cytochrome c oxidase copper chaperone 2 [Cucumis...	[more]
PON91164.1	1.4e-18	64.94	Cytochrome c oxidase copper chaperone [Trema orientalis]	[more]

BLAST of Carg00020 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G53030.1	2.1e-16	60.56	Cytochrome C oxidase copper chaperone (COX17)	[more]
AT3G15352.1	3.9e-15	69.39	cytochrome c oxidase 17	[more]

BLAST of Carg00020 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q94FT1\|CX172_ARATH	3.8e-15	60.56	Cytochrome c oxidase copper chaperone 2 OS=Arabidopsis thaliana OX=3702 GN=COX17...	[more]
sp\|Q9LJQ9\|CX171_ARATH	7.1e-14	69.39	Cytochrome c oxidase copper chaperone 1 OS=Arabidopsis thaliana OX=3702 GN=COX17...	[more]
sp\|Q54ID0\|COX17_DICDI	6.9e-09	57.14	Cytochrome c oxidase copper chaperone OS=Dictyostelium discoideum OX=44689 GN=co...	[more]
sp\|P81045\|COX17_PIG	4.5e-08	48.21	Cytochrome c oxidase copper chaperone OS=Sus scrofa OX=9823 GN=COX17 PE=1 SV=1	[more]
sp\|Q14061\|COX17_HUMAN	1.0e-07	55.10	Cytochrome c oxidase copper chaperone OS=Homo sapiens OX=9606 GN=COX17 PE=1 SV=2	[more]

BLAST of Carg00020 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L5D1\|A0A0A0L5D1_CUCSA	2.5e-24	76.62	Cytochrome c oxidase copper chaperone OS=Cucumis sativus OX=3659 GN=Csa_3G105960...	[more]
tr\|A0A1S4DYZ5\|A0A1S4DYZ5_CUCME	9.6e-24	76.62	LOW QUALITY PROTEIN: cytochrome c oxidase copper chaperone 2 OS=Cucumis melo OX=...	[more]
tr\|A0A2P5F045\|A0A2P5F045_9ROSA	9.3e-19	64.94	Cytochrome c oxidase copper chaperone OS=Trema orientalis OX=63057 GN=TorRG33x02...	[more]
tr\|A0A2G9HLC9\|A0A2G9HLC9_9LAMI	4.6e-18	63.16	Cytochrome c oxidase assembly protein/Cu2+ chaperone COX17 OS=Handroanthus impet...	[more]
tr\|A0A2P5D3Y5\|A0A2P5D3Y5_PARAD	4.6e-18	63.64	Cytochrome c oxidase copper chaperone OS=Parasponia andersonii OX=3476 GN=PanWU0...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005758	mitochondrial intermembrane space

Vocabulary: **Molecular Function**
Term	Definition
GO:0005507	copper ion binding
GO:0016531	copper chaperone activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006825	copper ion transport

Vocabulary: **INTERPRO**
Term	Definition
IPR009069	Cys_alpha_HP_mot_SF
IPR007745	Cyt_c_oxidase_Cu-chaperone

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006825	copper ion transport
cellular_component	GO:0005758	mitochondrial intermembrane space
molecular_function	GO:0016531	copper chaperone activity
molecular_function	GO:0005507	copper ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg00020-RA	Carg00020-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007745	Cytochrome c oxidase copper chaperone	PFAM	PF05051	COX17	coord: 75..116 e-value: 1.1E-14 score: 54.4
IPR007745	Cytochrome c oxidase copper chaperone	PANTHER	PTHR16719	CYTOCHROME C OXIDASE COPPER CHAPERONE	coord: 63..116
IPR007745	Cytochrome c oxidase copper chaperone	PRODOM	PD014904		coord: 73..106 e-value: 4.0E-12 score: 169.0
None	No IPR available	GENE3D	G3DSA:1.10.287.1130		coord: 57..118 e-value: 4.1E-20 score: 73.7
None	No IPR available	PANTHER	PTHR16719:SF3	SUBFAMILY NOT NAMED	coord: 63..116
IPR009069	Cysteine alpha-hairpin motif superfamily	SUPERFAMILY	SSF47072	Cysteine alpha-hairpin motif	coord: 68..117

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg00020	Cla011790	Watermelon (97103) v1	carwmB0664
Carg00020	Csa3G105960	Cucumber (Chinese Long) v2	carcuB0684
Carg00020	MELO3C016512	Melon (DHL92) v3.5.1	carmeB0670
Carg00020	ClCG10G006950	Watermelon (Charleston Gray)	carwcgB0641
Carg00020	CSPI03G06190	Wild cucumber (PI 183967)	carcpiB0696
Carg00020	Cucsa.074780	Cucumber (Gy14) v1	carcgyB0740
Carg00020	CmaCh04G009020	Cucurbita maxima (Rimu)	carcmaB0948
Carg00020	CmoCh04G009690	Cucurbita moschata (Rifu)	carcmoB0923
Carg00020	Lsi05G007490	Bottle gourd (USVL1VR-Ls)	carlsiB614
Carg00020	Cp4.1LG01g08580	Cucurbita pepo (Zucchini)	carcpeB0938
Carg00020	CsGy3G006290	Cucumber (Gy14) v2	carcgybB0659
Carg00020	MELO3C016512.2	Melon (DHL92) v3.6.1	carmedB0683
Carg00020	CsaV3_3G006320	Cucumber (Chinese Long) v3	carcucB0698
Carg00020	Cla97C10G190810	Watermelon (97103) v2	carwmbB0686
Carg00020	Bhi11G000656	Wax gourd	carwgoB0778

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg00020	Silver-seed gourd	carcarB468
Carg00020	Cucurbita maxima (Rimu)	carcmaB0946
Carg00020	Cucurbita moschata (Rifu)	carcmoB0920
Carg00020	Cucurbita pepo (Zucchini)	carcpeB0937
Carg00020	Bottle gourd (USVL1VR-Ls)	carlsiB616
Carg00020	Wax gourd	carwgoB0775
Carg00020	Wax gourd	carwgoB0779