Cp4.1LG01g06910 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG01g06910
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Lateral root primordium protein-related
Location	Cp4.1LG01 : 3961148 .. 3963029 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACAGCCAAAAAAAAAAGATGAAGTTTAAAAACGACACGTGGCAAAATAGTGACCGTAAGATGAGGTGATGGATGATCTCCACTTGCAGAGAGATCCCGGAAACTGTAACACAAAGTGGCATAGAAAGAGAGAATAAGAGAGAGAAAAGGTAATCAATCATGTCTGCGACTGCAACATAATCAGAGCATAGAGAAAGGGAAAGGGCTCAGAGAAGACAGAGAAGAAAAACAGCAACAGCAACAGCAAGAAGAAGAAGAAGAAGCAGCAGCAGCGGCGGCAGCATATGAGTGGATATGGGACTTTTGTGGTGTATTTAAGTTAGCACTTCGCCCCTTCCCCCACCTTCCCCCACTGCGCAACAAAGCCCATGGCGGCGTTGCAGACTTCACTTCAGTTTTAGACAGAGAGAGAAAAATACCCTTTAATGTATTAGAGAGACAGAGAGACAGAGAGACAGAGAGAGAGACAGAGAGATTTCACAATCTGATTCCCAATTCGACCTCTTTTCTACTTCCCCCCCTTTTTTTTTCTCTTGTAGTACGAAGAATTTGATTAAGAATTTCGAGAATTTGAGAAGGTAAGGAGAAAAAGTTGGAAAGGAATTGATTGATACATACCCTTTTTACAACTCTGGCTTTCGATCGCTCTTGAGAGGTTGTTTCTGATATGGATTTTAATTCCAAATCAGGAATAGTATCTCCGGTGGAAATATGGCCGGTTTTTACCCACTAGGCGGCGGAAGAGAACCCAATTATCACCTTCCCACTACCACCACCACCACCATCACGGACGGATTATTTTGGTACAGAAATTATGAGAGCCTTGGAATATGGCAGCAACAGCAGGTGCAGCAGCAAGCGGGAGAAGGGTTTGTTTACTCGGGCGATGAATCGCCTCCAAGATCGTCGTTGGTGATGCTGAGATCCGGCAGAAACGGGGGAGGGCAAGTAATAAGTTGCCAAGACTGTGGAAATCAAGCCAAAAAGGATTGCCTTCACATGCGATGTAGAACTTGCTGTAAAAGTCGTGGCTTTGACTGTGAAACCCATGTCAAAAGTACTTGGGTTCCGGCCTCCAAACGCCGTGAGCGACACCTCCGCAGCGACGGCACTAATCTCAAACGACCTCGAGACAACACCGCCGCTTCCTCAGGTACAATCAAATTAATTCTTGCTGTTTTCCTTTTTTTTTTTATATATATATTTTATTTGATTTTTAGATTTCTTGTGAGGGAGGGCTTTGTTTTGGAAGTTTTTCCAAATTCCAGCAAGACCCACATCGATTTTGGTCATGATTGACAGAATCAATCTCTCTCTTTCTCTAAAATGGTCTCTCTCTTTTTTTTCTTTTTTCTTTTTTTAAAATTTTGGTTTTAGGGTTAGAAATGGGGAATTTGCCGGTGGAAGTGAGCTCAACGGCGGTGTTTCGGTGCGTGCGAATGACAACGTTGGACGAAACAAACGACCAATTTGCTTACCAAACAGCCGTCAACATCGGAGGCCATACCTTCAAGGGCATTCTTTACGACCACGGCCCTGAACAACAACAACAACCACCACCACCACCACCACCCAACTCCGCCTCCCCCGACGGTGGCGCCCTCCTCATCACCGCCCCCTCCACCACCATGGAATTGCCGCCCATCAGCACCGCATTGCTCGATCCTCCTCCGCCGTACCCAGCTCCTCTGAACACCTACGTCGCCGCCGGTACGCAATTTTTTCTTCCCCCAACGTCTTAATGTCGTAATGAATTTTATGAAATCGAAGAGAATTAGCTGAAATTGAGAATGGATAATGAAGGAAGTATGTGGCACGAGTATATAATTTTTTTATCATAAATTTATAAGCTTTTAATTTTTCAAGAGTTCGCATTAATGTGC

mRNA sequence

ACAGCCAAAAAAAAAAGATGAAGTTTAAAAACGACACGTGGCAAAATAGTGACCGTAAGATGAGGTGATGGATGATCTCCACTTGCAGAGAGATCCCGGAAACTGTAACACAAAGTGGCATAGAAAGAGAGAATAAGAGAGAGAAAAGGTAATCAATCATGTCTGCGACTGCAACATAATCAGAGCATAGAGAAAGGGAAAGGGCTCAGAGAAGACAGAGAAGAAAAACAGCAACAGCAACAGCAAGAAGAAGAAGAAGAAGCAGCAGCAGCGGCGGCAGCATATGAGTGGATATGGGACTTTTGTGGTGTATTTAAGTTAGCACTTCGCCCCTTCCCCCACCTTCCCCCACTGCGCAACAAAGCCCATGGCGGCGTTGCAGACTTCACTTCAGTTTTAGACAGAGAGAGAAAAATACCCTTTAATGTATTAGAGAGACAGAGAGACAGAGAGACAGAGAGAGAGACAGAGAGATTTCACAATCTGATTCCCAATTCGACCTCTTTTCTACTTCCCCCCCTTTTTTTTTCTCTTGTAGTACGAAGAATTTGATTAAGAATTTCGAGAATTTGAGAAGGTAAGGAGAAAAAGTTGGAAAGGAATTGATTGATACATACCCTTTTTACAACTCTGGCTTTCGATCGCTCTTGAGAGGTTGTTTCTGATATGGATTTTAATTCCAAATCAGGAATAGTATCTCCGGTGGAAATATGGCCGGTTTTTACCCACTAGGCGGCGGAAGAGAACCCAATTATCACCTTCCCACTACCACCACCACCACCATCACGGACGGATTATTTTGGTACAGAAATTATGAGAGCCTTGGAATATGGCAGCAACAGCAGGTGCAGCAGCAAGCGGGAGAAGGGTTTGTTTACTCGGGCGATGAATCGCCTCCAAGATCGTCGTTGGTGATGCTGAGATCCGGCAGAAACGGGGGAGGGCAAGTAATAAGTTGCCAAGACTGTGGAAATCAAGCCAAAAAGGATTGCCTTCACATGCGATGTAGAACTTGCTGTAAAAGTCGTGGCTTTGACTGTGAAACCCATGTCAAAAGTACTTGGGTTCCGGCCTCCAAACGCCGTGAGCGACACCTCCGCAGCGACGGCACTAATCTCAAACGACCTCGAGACAACACCGCCGCTTCCTCAGGGTTAGAAATGGGGAATTTGCCGGTGGAAGTGAGCTCAACGGCGGTGTTTCGGTGCGTGCGAATGACAACGTTGGACGAAACAAACGACCAATTTGCTTACCAAACAGCCGTCAACATCGGAGGCCATACCTTCAAGGGCATTCTTTACGACCACGGCCCTGAACAACAACAACAACCACCACCACCACCACCACCCAACTCCGCCTCCCCCGACGGTGGCGCCCTCCTCATCACCGCCCCCTCCACCACCATGGAATTGCCGCCCATCAGCACCGCATTGCTCGATCCTCCTCCGCCGTACCCAGCTCCTCTGAACACCTACGTCGCCGCCGGTACGCAATTTTTTCTTCCCCCAACGTCTTAATGTCGTAATGAATTTTATGAAATCGAAGAGAATTAGCTGAAATTGAGAATGGATAATGAAGGAAGTATGTGGCACGAGTATATAATTTTTTTATCATAAATTTATAAGCTTTTAATTTTTCAAGAGTTCGCATTAATGTGC

Coding sequence (CDS)

ATGGCCGGTTTTTACCCACTAGGCGGCGGAAGAGAACCCAATTATCACCTTCCCACTACCACCACCACCACCATCACGGACGGATTATTTTGGTACAGAAATTATGAGAGCCTTGGAATATGGCAGCAACAGCAGGTGCAGCAGCAAGCGGGAGAAGGGTTTGTTTACTCGGGCGATGAATCGCCTCCAAGATCGTCGTTGGTGATGCTGAGATCCGGCAGAAACGGGGGAGGGCAAGTAATAAGTTGCCAAGACTGTGGAAATCAAGCCAAAAAGGATTGCCTTCACATGCGATGTAGAACTTGCTGTAAAAGTCGTGGCTTTGACTGTGAAACCCATGTCAAAAGTACTTGGGTTCCGGCCTCCAAACGCCGTGAGCGACACCTCCGCAGCGACGGCACTAATCTCAAACGACCTCGAGACAACACCGCCGCTTCCTCAGGGTTAGAAATGGGGAATTTGCCGGTGGAAGTGAGCTCAACGGCGGTGTTTCGGTGCGTGCGAATGACAACGTTGGACGAAACAAACGACCAATTTGCTTACCAAACAGCCGTCAACATCGGAGGCCATACCTTCAAGGGCATTCTTTACGACCACGGCCCTGAACAACAACAACAACCACCACCACCACCACCACCCAACTCCGCCTCCCCCGACGGTGGCGCCCTCCTCATCACCGCCCCCTCCACCACCATGGAATTGCCGCCCATCAGCACCGCATTGCTCGATCCTCCTCCGCCGTACCCAGCTCCTCTGAACACCTACGTCGCCGCCGGTACGCAATTTTTTCTTCCCCCAACGTCTTAA

Protein sequence

MAGFYPLGGGREPNYHLPTTTTTTITDGLFWYRNYESLGIWQQQQVQQQAGEGFVYSGDESPPRSSLVMLRSGRNGGGQVISCQDCGNQAKKDCLHMRCRTCCKSRGFDCETHVKSTWVPASKRRERHLRSDGTNLKRPRDNTAASSGLEMGNLPVEVSSTAVFRCVRMTTLDETNDQFAYQTAVNIGGHTFKGILYDHGPEQQQQPPPPPPPNSASPDGGALLITAPSTTMELPPISTALLDPPPPYPAPLNTYVAAGTQFFLPPTS

Homology

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BLAST of Cp4.1LG01g06910 vs. Swiss-Prot
Match: SRS1_ARATH (Protein SHI RELATED SEQUENCE 1 OS=Arabidopsis thaliana GN=SRS1 PE=1 SV=2)

HSP 1 Score: 192.6 bits (488), Expect = 5.6e-48
Identity = 136/317 (42.90%), Postives = 177/317 (55.84%), Query Frame = 1


Query: 14  NYHLPTTTTTTITDGLFWYRNYESLGIWQQQQVQQQ-------AGEG--------FVYSG 73
           N + P+++   +     W  + +   ++Q QQ QQ+       AG G        F  SG
Sbjct: 55  NANAPSSSNAALGTLELWQNHNQQEIMFQHQQHQQRLDLYSSAAGLGVGPSNHNQFDISG 114

Query: 74  DESPP----RSSLVMLRSGRNGGGQV-ISCQDCGNQAKKDCLHMRCRTCCKSRGFDCETH 133
           + S       ++++M+RSG +GGG   +SCQDCGNQAKKDC HMRCRTCCKSRGF+C TH
Sbjct: 115 ETSTAGAGRAAAMMMIRSGGSGGGSGGVSCQDCGNQAKKDCSHMRCRTCCKSRGFECSTH 174

Query: 134 VKSTWVPASKRRERHLR----SDGTNL-------KRPRDNTAAS------------SGLE 193
           V+STWVPA+KRRER  +       T L       KR R+N  A+            SGLE
Sbjct: 175 VRSTWVPAAKRRERQQQLATVQPQTQLPRGESVPKRHRENLPATSSSLVCTRIPSHSGLE 234

Query: 194 MGNLPVEVSSTAVFRCVRMTTLDETNDQFAYQTAVNIGGHTFKGILYDHGPEQQQQP--P 253
           +GN P EVSS+AVFRCVR++++++  ++FAYQTAV+IGGH FKGILYD GP         
Sbjct: 235 VGNFPAEVSSSAVFRCVRVSSVEDGEEEFAYQTAVSIGGHIFKGILYDLGPGSSGGGGYN 294

Query: 254 PPPPPNSASPDGGAL---LITAPSTTMELPPIST--------------ALLDPPPPYPAP 269
                 S+S  GGA    LITA S T+     ST                +DP   YP P
Sbjct: 295 VVAAGESSSGGGGAQQLNLITAGSVTVATASSSTPNLGGIGSSSAAAATYIDPAALYPTP 354

[Close]

BLAST of Cp4.1LG01g06910 vs. Swiss-Prot
Match: SHI_ARATH (Protein SHORT INTERNODES OS=Arabidopsis thaliana GN=SHI PE=1 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 1.1e-46
Identity = 133/329 (40.43%), Postives = 178/329 (54.10%), Query Frame = 1


Query: 1   MAGFYPLG---GGREPNYHLPTTT--TTTITDGLFWYR-------------NYE-SLGIW 60
           MAGF+ LG   GG  P+ H   T   +++ T+   W R             +Y+ +L +W
Sbjct: 1   MAGFFSLGHGGGGNTPDNHRTNTNNPSSSGTESWLWCRNPNSNADGGEAGPSYKGTLELW 60

Query: 61  Q---------QQQVQQQ---------AGEGFVYSGDESPPRS--SLVMLRSGRNGGGQVI 120
           Q         QQQ QQQ         AG G   S       S  +L+M+RSG   GG   
Sbjct: 61  QHPNNQEIIFQQQQQQQQRLDLYTSAAGLGVGPSNRSLIETSGGALMMMRSGSGSGGP-- 120

Query: 121 SCQDCGNQAKKDCLHMRCRTCCKSRGFDCETHVKSTWVPASKRRERHLRSD--------- 180
           SCQDCGNQ+KKDC HMRCRTCCKSRG DC THVKSTWVPA+KRRER  +           
Sbjct: 121 SCQDCGNQSKKDCSHMRCRTCCKSRGLDCPTHVKSTWVPAAKRRERQQQLSTGQQPQQLG 180

Query: 181 GTNLKRPRDNTAA--------------SSGLEMGNLPVEVSSTAVFRCVRMTTLDETNDQ 240
           G+  KR R+   A              +SGLE+GN P EVSS+AVFRCVR++++D+  ++
Sbjct: 181 GSVPKRQRERIPARSTSMAYTRIPSNNTSGLEVGNFPPEVSSSAVFRCVRVSSVDDEEEE 240

Query: 241 FAYQTAVNIGGHTFKGILYDHGPEQQQQPPPPPPPNSASPDGGALLITAPSTTME---LP 264
           +AY+TAV+IGGH FKG+LYD GP ++        P +    G +   ++P+ +     + 
Sbjct: 241 YAYKTAVSIGGHVFKGVLYDQGPAERSSSGGGSQPLNLITAGPSASSSSPNVSCNNGVVG 300

[Close]

BLAST of Cp4.1LG01g06910 vs. Swiss-Prot
Match: SRS5_ARATH (Protein SHI RELATED SEQUENCE 5 OS=Arabidopsis thaliana GN=SRS5 PE=2 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 1.2e-42
Identity = 130/314 (41.40%), Postives = 157/314 (50.00%), Query Frame = 1


Query: 32  YRNYESLGIW----------QQQQVQQQAGE--------GFVYSGDESP-----PRSSLV 91
           Y N +   IW          QQQQ QQQ           G V SG  S       RS   
Sbjct: 45  YNNNKGFEIWPPQYFQQQEHQQQQQQQQHASAPANFYSFGMVPSGSSSNNNNNRSRSLYF 104

Query: 92  MLRSGRNGGGQVIS------CQDCGNQAKKDCLHMRCRTCCKSRGFDCETHVKSTWVPAS 151
            + S    GG  ++      CQDCGNQAKKDC HMRCRTCCKSRGF C+THVKSTWVPA+
Sbjct: 105 NVVSDHEPGGFTVTRQGGMNCQDCGNQAKKDCPHMRCRTCCKSRGFHCQTHVKSTWVPAA 164

Query: 152 KRRER---------HLRS--DGTNLKRPRD--------------------------NTAA 211
           KRRER         H  S  +  N KR R+                          N  +
Sbjct: 165 KRRERLAQLASLQHHSASSRETQNAKRLREASGGDNNDDKDHSGGGGSALANTRVVNANS 224

Query: 212 SSGLEMG-NLPVEVSSTAVFRCVRMTTLDETNDQ--FAYQTAVNIGGHTFKGILYDHGPE 269
           +SGLE+  +LP EV+S A+FRCVR+++++E  D   +AYQTAVNIGGH FKGILYD GPE
Sbjct: 225 NSGLEVSQHLPPEVNSPAIFRCVRVSSIEEDEDDQAYAYQTAVNIGGHIFKGILYDQGPE 284

[Close]

BLAST of Cp4.1LG01g06910 vs. Swiss-Prot
Match: SRS7_ARATH (Protein SHI RELATED SEQUENCE 7 OS=Arabidopsis thaliana GN=SRS7 PE=2 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 1.6e-39
Identity = 108/246 (43.90%), Postives = 135/246 (54.88%), Query Frame = 1


Query: 59  DESPPRSSLVMLRSGRNGGGQVISCQDCGNQAKKDCLHMRCRTCCKSRGFDCETHVKSTW 118
           D  P RSS       R G    ++CQDCGNQAKKDC HMRCRTCCKSRGFDC+THVKSTW
Sbjct: 98  DHEPVRSSTGGFTVTRQGN---MNCQDCGNQAKKDCPHMRCRTCCKSRGFDCQTHVKSTW 157

Query: 119 VPASKRRER----------HLRS-----------------------DGTNLKRPRDNTAA 178
           V A+KRRER           +R                         G+ L   R   A+
Sbjct: 158 VSAAKRRERQAQLAVLPAKRIRDANSRGGGDDDDDDKEDEKNDSCGGGSALACTRVVNAS 217

Query: 179 SSGLEMGNLPVEVSSTAVFRCVRMTTLDETNDQFAYQTAVNIGGHTFKGILYDHGPEQQQ 238
           SSGLE  +LP E+SS AVFRC+R++++D+ ++++AYQTAV+IGGH FKGILYD GP    
Sbjct: 218 SSGLETSHLPPEISSPAVFRCMRVSSIDDEDEEYAYQTAVSIGGHVFKGILYDQGPSSDH 277

Query: 239 QPPPPPPPNSASPDGGA-LLITAPS--TTMELPPIST--ALLDPPPPYPA---PLNTYVA 264
                      S      L+ + PS  TT  +  ++T    +DP   Y A   P N +VA
Sbjct: 278 HRYSSSLNGETSHQHHLNLMDSTPSAATTNAVTAVNTNNGSIDPSSLYTAVATPFNAFVA 337

[Close]

BLAST of Cp4.1LG01g06910 vs. Swiss-Prot
Match: SRS2_ARATH (Protein SHI RELATED SEQUENCE 2 OS=Arabidopsis thaliana GN=SRS2 PE=2 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 1.4e-38
Identity = 121/319 (37.93%), Postives = 155/319 (48.59%), Query Frame = 1


Query: 1   MAGFYPLGGGREPNYHLPTTTTTTITDGLFWYR---NYESLGIWQQQQVQQQAGEGFVYS 60
           MAG + LGG    N                WYR   N  ++     QQV Q   E  +  
Sbjct: 1   MAGIFSLGGNNNNNGDEEEENQQQQKTNWVWYRSNANTNNINPSSSQQVWQIPPEQMLMH 60

Query: 61  GDESPPRSSLVMLRSGR--------NGGGQVISCQDCGNQAKKDCLHMRCRTCCKSRGFD 120
               P + SL +    +        +     ISC+DCGNQAKKDC HMRCRTCCKSRGFD
Sbjct: 61  HHSHPQQQSLDLYPGHQIDVSDLATSSRSITISCRDCGNQAKKDCTHMRCRTCCKSRGFD 120

Query: 121 CETHVKSTWVPASKRRER----HLRSDG---------------TNLKRPRDNT------- 180
           C THV+STW+P ++RRER    H+ + G               +  KR RD T       
Sbjct: 121 CSTHVRSTWIPVARRRERQQQLHMSTSGGGGGSGSGGAGGGGSSIPKRHRDPTLPGTSSS 180

Query: 181 ----AASSGLEMG--NLPVEVSSTAVFRCVRMTTLDETND-QFAYQTAVNIGGHTFKGIL 240
               + S+GLEMG  + P EVSS A+FRCV+M+ +D+  D Q+AYQT VNIGGH FKGIL
Sbjct: 181 SRLPSHSAGLEMGEASFPGEVSSDALFRCVKMSGVDDGGDGQYAYQTTVNIGGHLFKGIL 240

Query: 241 YDHGPEQQQQP----PPPPPPNSASPDGGALLITAPSTTMELPPISTALLDPPPP---YP 267
           YD GPE               +SA   GG      P  T     +S+A+   P     Y 
Sbjct: 241 YDQGPESSYMSGGSGGSDHQSSSAGGGGGGHPFNPPVVTDGGGGVSSAMFVDPNSGGYYS 300

[Close]

BLAST of Cp4.1LG01g06910 vs. TrEMBL
Match: A0A0A0KUG2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G043960 PE=4 SV=1)

HSP 1 Score: 362.1 bits (928), Expect = 5.9e-97
Identity = 190/289 (65.74%), Postives = 210/289 (72.66%), Query Frame = 1


Query: 1   MAGFYPL----GGGREPNYHLPTTTTT-----TITDGLFWYRNYESLGIW-------QQQ 60
           MAGF+PL     GGR PNYH PT TT        T+GLFWY+NYE L  W       QQQ
Sbjct: 1   MAGFFPLDGGGSGGRVPNYHFPTPTTGGEIIHPTTEGLFWYKNYERLETWEGEEQQQQQQ 60

Query: 61  QVQQQAGEGFVYSGDESPPRSSLVMLRSGRNGGG---QVISCQDCGNQAKKDCLHMRCRT 120
             Q+Q GEGFVYSGDESP RSSLVM+RSGR GGG    V SCQDCGNQAKKDC+HMRCRT
Sbjct: 61  PAQEQGGEGFVYSGDESPARSSLVMVRSGRGGGGGGGPVTSCQDCGNQAKKDCVHMRCRT 120

Query: 121 CCKSRGFDCETHVKSTWVPASKRRERHLRSDGTNLKRPRDN--TAASSGLEMGNLPVEVS 180
           CCKSRGF+CETHVKSTWVPASKRR+RHLRSDG N KRP+D      SSGL+MGN P EV+
Sbjct: 121 CCKSRGFECETHVKSTWVPASKRRDRHLRSDGLNSKRPKDTHYHPTSSGLDMGNFPTEVT 180

Query: 181 STAVFRCVRMTTLDETNDQFAYQTAVNIGGHTFKGILYDHGPEQQQQPPPPPPPNSASPD 240
           + AVFRCVRMT+LDET+DQ+AYQTAVNIGG  FKGILYDHGPEQ     PPPPP+S+   
Sbjct: 181 TPAVFRCVRMTSLDETDDQYAYQTAVNIGGRIFKGILYDHGPEQ-----PPPPPSSS--- 240

Query: 241 GGALLITAPSTTMELPPISTALLDPPPPYPAPLNTYVAAGTQFFLPPTS 269
                             S ALLDP PPYP PL+TY+ AGTQFFLPP+S
Sbjct: 241 ------------------SAALLDPTPPYPTPLSTYITAGTQFFLPPSS 263

[Close]

BLAST of Cp4.1LG01g06910 vs. TrEMBL
Match: B9T5Y4_RICCO (Transcription factor, putative OS=Ricinus communis GN=RCOM_0415480 PE=4 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 6.4e-59
Identity = 156/355 (43.94%), Postives = 188/355 (52.96%), Query Frame = 1


Query: 1   MAGFYPLGGG----------REPNYHLPTTTTTTITDGLFWYRN----YESLGIWQQQQV 60
           MAG + LGGG          ++ N + P   T    +  FWY+N    Y+   +WQQQQ 
Sbjct: 1   MAGLFSLGGGGGRGSNQEDDQQHNNNPPPPPTEIPQESWFWYKNEDVPYKGFELWQQQQQ 60

Query: 61  QQQ-------------------AGEGF------VYSGDESPPRSSLVMLRSGRNGGGQVI 120
           QQQ                   AG G       +   DES  RS+ +M+RS  + GG  +
Sbjct: 61  QQQEFFRHQSLQQQQQDLYSSAAGLGVGPSRSSINFSDESSSRSAFMMMRS--SSGGSSM 120

Query: 121 SCQDCGNQAKKDCLHMRCRTCCKSRGFDCETHVKSTWVPASKRRER-------------- 180
           SCQDCGNQAKKDC+HMRCRTCCKSRGFDC+THVKSTWVPASKRRER              
Sbjct: 121 SCQDCGNQAKKDCVHMRCRTCCKSRGFDCQTHVKSTWVPASKRRERQQQLVAIQQQQHQQ 180

Query: 181 --HLRSDGTNLKRPRDNTAA----------------SSGLEMGNLPVEVSSTAVFRCVRM 240
               +    N KR R+N  +                SSGLE+GN P EVSS AVFRCV++
Sbjct: 181 QQQQQQQQQNPKRLRENPTSSSLACTPATNTRLPNNSSGLELGNFPSEVSSPAVFRCVKV 240

Query: 241 TTLDETNDQFAYQTAVNIGGHTFKGILYDHGPEQQQQPPPPPPPNSASPDGGAL----LI 269
           + +DE +DQ+AYQTAVNIGGH FKGILYDHGPE      P    +S    GG L    LI
Sbjct: 241 SGIDENDDQYAYQTAVNIGGHVFKGILYDHGPESTYM--PAAETSSGGGSGGGLQPLNLI 300

[Close]

BLAST of Cp4.1LG01g06910 vs. TrEMBL
Match: U5G8I9_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s13610g PE=4 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 1.0e-56
Identity = 150/335 (44.78%), Postives = 187/335 (55.82%), Query Frame = 1


Query: 1   MAGFYPLGGG------REPNYHLPTTTTTTITDGLFWYRN----YESLGIWQQQQVQ--- 60
           MAG + LG G      +E   +     T    +  FWY++    Y+S  +WQQQ  +   
Sbjct: 1   MAGLFSLGRGSSSSNNQEDQQNNNNPPTEIPQESWFWYKSEDIPYKSFELWQQQHQELLH 60

Query: 61  --QQAGEGFVYS----------------GDESPPRSS-----LVMLRSGRNGGGQV--IS 120
              Q  +  +YS                 DES  RS+      +M+R G +G G    IS
Sbjct: 61  QRHQNPQQDLYSPAVGLGVGPSRTSINISDESSSRSAAAAEAFMMMRPGGSGTGGAGSIS 120

Query: 121 CQDCGNQAKKDCLHMRCRTCCKSRGFDCETHVKSTWVPASKRRER-----------HLRS 180
           CQDCGNQAKKDC+HMRCRTCCKSRGF+C+THVKSTWVPASKRRER            L+ 
Sbjct: 121 CQDCGNQAKKDCIHMRCRTCCKSRGFECQTHVKSTWVPASKRRERQQQLNLLQQQQQLQI 180

Query: 181 DGTNLKRPRDNTAAS----------SGLEMGNLPVEVSSTAVFRCVRMTTLDETNDQFAY 240
            G N KR R+N ++S          SGLE+GN P EVSS A+FRCVR++ +DE+ +  AY
Sbjct: 181 RGENPKRQRENPSSSLACTRLANSMSGLELGNFPSEVSSPALFRCVRVSGIDESEEMLAY 240

Query: 241 QTAVNIGGHTFKGILYDHGPEQQQQPPPPPPPNSASPDGGAL----LITAPSTT----ME 269
           QTAVNIGGH FKGILYDHGP+          P   S  GG +    LITA + T    + 
Sbjct: 241 QTAVNIGGHVFKGILYDHGPDSNYM-----APGETSSGGGGVQPLNLITAGTATGGGGVT 300

[Close]

BLAST of Cp4.1LG01g06910 vs. TrEMBL
Match: A0A067K8V2_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13664 PE=4 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 5.6e-55
Identity = 153/355 (43.10%), Postives = 187/355 (52.68%), Query Frame = 1


Query: 1   MAGFYPLGGG--------REPNYHLPTTTTTTITDGLFWYRNYE------SLGIWQQQQV 60
           MAG + LGGG         + + H     T    +  FWY+N +      +  +WQQQ+ 
Sbjct: 1   MAGLFSLGGGGGGGGRGSNQDDQHNNNPPTEIPQESWFWYKNEDIPYKGTTFELWQQQEF 60

Query: 61  ----------QQQ------AGEGF------VYSGDESPPRSSLVMLRS-----GRNGGGQ 120
                     Q Q      AG G       +   DES  RS+ +M+RS     G +GG  
Sbjct: 61  LHHRHHQHHHQNQDLYSSAAGLGVGPSRSSINVSDESSSRSAFMMMRSVSGAGGGSGGAG 120

Query: 121 VISCQDCGNQAKKDCLHMRCRTCCKSRGFDCETHVKSTWVPASKRRER------------ 180
            +SCQDCGNQAKKDC+HMRCRTCCKSRGFDC+THVKSTWVPASKRRER            
Sbjct: 121 GMSCQDCGNQAKKDCMHMRCRTCCKSRGFDCQTHVKSTWVPASKRRERQQLAALQQQQQQ 180

Query: 181 -HLRSDGTNLKRPRDNTAASS------------GLEMGNLPVEVSSTAVFRCVRMTTLDE 240
             LR D  N KR R+N  +SS            GL++GN P EVSS A FRCVR++ +DE
Sbjct: 181 LQLRGD-QNPKRHRENPTSSSLACTRLPSNNTTGLDVGNFPAEVSSPATFRCVRVSGIDE 240

Query: 241 TNDQFAYQTAVNIGGHTFKGILYDHGPEQQQQPPPPPPPNSASPDGGAL------LITAP 269
            +DQ+AYQTAVNIGGH FKGILYDHG E         P   +S  GG++      LITA 
Sbjct: 241 NDDQYAYQTAVNIGGHVFKGILYDHGSESSY-----IPAGESSSGGGSVGVQPLNLITAG 300

[Close]

BLAST of Cp4.1LG01g06910 vs. TrEMBL
Match: A0A0D2QE61_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G011800 PE=4 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 3.7e-54
Identity = 135/297 (45.45%), Postives = 167/297 (56.23%), Query Frame = 1


Query: 1   MAGFYPLGGGREPNYHLPTTTTTTITDGLFWYRN----YESLGIWQQQQVQQQAGEGFVY 60
           MAGF+  G  ++ N   PT  T    +  FW RN    Y+   +WQQQQ Q+Q  +  +Y
Sbjct: 1   MAGFFLRGQDQQDNNSPPTDQT----ENWFWCRNEDIPYKGFELWQQQQQQEQQQQQHIY 60

Query: 61  S-----GDESPPRSSLVMLRSGRN-------GGGQV--ISCQDCGNQAKKDCLHMRCRTC 120
                 G  S   S+ +M+ SG         GGG    ISCQDCGNQAKKDC HMRCRTC
Sbjct: 61  MSGLGVGGPSRGSSNFMMMTSGGGNDGGGGGGGGNTSGISCQDCGNQAKKDCPHMRCRTC 120

Query: 121 CKSRGFDCETHVKSTWVPASKRRERHLRSD-------------GTNLKRPRDNTAASSGL 180
           CKSRGFDC+THVKSTWVPAS+RRER  +                   KR R+N    +GL
Sbjct: 121 CKSRGFDCQTHVKSTWVPASRRRERQQQQQQLVSPQQHQQIIRAEQSKRHRENP---TGL 180

Query: 181 EMGNLPVEVSSTAVFRCVRMTTLDETNDQFAYQTAVNIGGHTFKGILYDHGPEQQQQPPP 240
           E+GN P E+SS AVFRCVR++ +++ +DQ+AYQTAVNIGGH FKGILY  GPE       
Sbjct: 181 ELGNFPAELSSEAVFRCVRVSNVEDADDQYAYQTAVNIGGHVFKGILYSQGPETNYDMAG 240

Query: 241 PPPPNSASPDGGALLITAPSTTMELPPISTALLDPPPPYPAPLNTYVAAGTQFFLPP 267
                + +  G A      ++    P  +T  +DP   YP  LNT   AGTQFF  P
Sbjct: 241 AATTTTTTAGGVAATAATTASGGASPSSTTPFIDPSSLYPT-LNTNFMAGTQFFPNP 289

[Close]

BLAST of Cp4.1LG01g06910 vs. TAIR10
Match: AT3G51060.1 (AT3G51060.1 Lateral root primordium (LRP) protein-related)

HSP 1 Score: 192.6 bits (488), Expect = 3.2e-49
Identity = 136/317 (42.90%), Postives = 177/317 (55.84%), Query Frame = 1


Query: 14  NYHLPTTTTTTITDGLFWYRNYESLGIWQQQQVQQQ-------AGEG--------FVYSG 73
           N + P+++   +     W  + +   ++Q QQ QQ+       AG G        F  SG
Sbjct: 55  NANAPSSSNAALGTLELWQNHNQQEIMFQHQQHQQRLDLYSSAAGLGVGPSNHNQFDISG 114

Query: 74  DESPP----RSSLVMLRSGRNGGGQV-ISCQDCGNQAKKDCLHMRCRTCCKSRGFDCETH 133
           + S       ++++M+RSG +GGG   +SCQDCGNQAKKDC HMRCRTCCKSRGF+C TH
Sbjct: 115 ETSTAGAGRAAAMMMIRSGGSGGGSGGVSCQDCGNQAKKDCSHMRCRTCCKSRGFECSTH 174

Query: 134 VKSTWVPASKRRERHLR----SDGTNL-------KRPRDNTAAS------------SGLE 193
           V+STWVPA+KRRER  +       T L       KR R+N  A+            SGLE
Sbjct: 175 VRSTWVPAAKRRERQQQLATVQPQTQLPRGESVPKRHRENLPATSSSLVCTRIPSHSGLE 234

Query: 194 MGNLPVEVSSTAVFRCVRMTTLDETNDQFAYQTAVNIGGHTFKGILYDHGPEQQQQP--P 253
           +GN P EVSS+AVFRCVR++++++  ++FAYQTAV+IGGH FKGILYD GP         
Sbjct: 235 VGNFPAEVSSSAVFRCVRVSSVEDGEEEFAYQTAVSIGGHIFKGILYDLGPGSSGGGGYN 294

Query: 254 PPPPPNSASPDGGAL---LITAPSTTMELPPIST--------------ALLDPPPPYPAP 269
                 S+S  GGA    LITA S T+     ST                +DP   YP P
Sbjct: 295 VVAAGESSSGGGGAQQLNLITAGSVTVATASSSTPNLGGIGSSSAAAATYIDPAALYPTP 354

[Close]

BLAST of Cp4.1LG01g06910 vs. TAIR10
Match: AT5G66350.1 (AT5G66350.1 Lateral root primordium (LRP) protein-related)

HSP 1 Score: 188.3 bits (477), Expect = 6.0e-48
Identity = 133/329 (40.43%), Postives = 178/329 (54.10%), Query Frame = 1


Query: 1   MAGFYPLG---GGREPNYHLPTTT--TTTITDGLFWYR-------------NYE-SLGIW 60
           MAGF+ LG   GG  P+ H   T   +++ T+   W R             +Y+ +L +W
Sbjct: 1   MAGFFSLGHGGGGNTPDNHRTNTNNPSSSGTESWLWCRNPNSNADGGEAGPSYKGTLELW 60

Query: 61  Q---------QQQVQQQ---------AGEGFVYSGDESPPRS--SLVMLRSGRNGGGQVI 120
           Q         QQQ QQQ         AG G   S       S  +L+M+RSG   GG   
Sbjct: 61  QHPNNQEIIFQQQQQQQQRLDLYTSAAGLGVGPSNRSLIETSGGALMMMRSGSGSGGP-- 120

Query: 121 SCQDCGNQAKKDCLHMRCRTCCKSRGFDCETHVKSTWVPASKRRERHLRSD--------- 180
           SCQDCGNQ+KKDC HMRCRTCCKSRG DC THVKSTWVPA+KRRER  +           
Sbjct: 121 SCQDCGNQSKKDCSHMRCRTCCKSRGLDCPTHVKSTWVPAAKRRERQQQLSTGQQPQQLG 180

Query: 181 GTNLKRPRDNTAA--------------SSGLEMGNLPVEVSSTAVFRCVRMTTLDETNDQ 240
           G+  KR R+   A              +SGLE+GN P EVSS+AVFRCVR++++D+  ++
Sbjct: 181 GSVPKRQRERIPARSTSMAYTRIPSNNTSGLEVGNFPPEVSSSAVFRCVRVSSVDDEEEE 240

Query: 241 FAYQTAVNIGGHTFKGILYDHGPEQQQQPPPPPPPNSASPDGGALLITAPSTTME---LP 264
           +AY+TAV+IGGH FKG+LYD GP ++        P +    G +   ++P+ +     + 
Sbjct: 241 YAYKTAVSIGGHVFKGVLYDQGPAERSSSGGGSQPLNLITAGPSASSSSPNVSCNNGVVG 300

[Close]

BLAST of Cp4.1LG01g06910 vs. TAIR10
Match: AT1G75520.1 (AT1G75520.1 SHI-related sequence 5)

HSP 1 Score: 174.9 bits (442), Expect = 6.8e-44
Identity = 130/314 (41.40%), Postives = 157/314 (50.00%), Query Frame = 1


Query: 32  YRNYESLGIW----------QQQQVQQQAGE--------GFVYSGDESP-----PRSSLV 91
           Y N +   IW          QQQQ QQQ           G V SG  S       RS   
Sbjct: 45  YNNNKGFEIWPPQYFQQQEHQQQQQQQQHASAPANFYSFGMVPSGSSSNNNNNRSRSLYF 104

Query: 92  MLRSGRNGGGQVIS------CQDCGNQAKKDCLHMRCRTCCKSRGFDCETHVKSTWVPAS 151
            + S    GG  ++      CQDCGNQAKKDC HMRCRTCCKSRGF C+THVKSTWVPA+
Sbjct: 105 NVVSDHEPGGFTVTRQGGMNCQDCGNQAKKDCPHMRCRTCCKSRGFHCQTHVKSTWVPAA 164

Query: 152 KRRER---------HLRS--DGTNLKRPRD--------------------------NTAA 211
           KRRER         H  S  +  N KR R+                          N  +
Sbjct: 165 KRRERLAQLASLQHHSASSRETQNAKRLREASGGDNNDDKDHSGGGGSALANTRVVNANS 224

Query: 212 SSGLEMG-NLPVEVSSTAVFRCVRMTTLDETNDQ--FAYQTAVNIGGHTFKGILYDHGPE 269
           +SGLE+  +LP EV+S A+FRCVR+++++E  D   +AYQTAVNIGGH FKGILYD GPE
Sbjct: 225 NSGLEVSQHLPPEVNSPAIFRCVRVSSIEEDEDDQAYAYQTAVNIGGHIFKGILYDQGPE 284

[Close]

BLAST of Cp4.1LG01g06910 vs. TAIR10
Match: AT1G19790.1 (AT1G19790.1 SHI-related sequence 7)

HSP 1 Score: 164.5 bits (415), Expect = 9.2e-41
Identity = 108/246 (43.90%), Postives = 135/246 (54.88%), Query Frame = 1


Query: 59  DESPPRSSLVMLRSGRNGGGQVISCQDCGNQAKKDCLHMRCRTCCKSRGFDCETHVKSTW 118
           D  P RSS       R G    ++CQDCGNQAKKDC HMRCRTCCKSRGFDC+THVKSTW
Sbjct: 98  DHEPVRSSTGGFTVTRQGN---MNCQDCGNQAKKDCPHMRCRTCCKSRGFDCQTHVKSTW 157

Query: 119 VPASKRRER----------HLRS-----------------------DGTNLKRPRDNTAA 178
           V A+KRRER           +R                         G+ L   R   A+
Sbjct: 158 VSAAKRRERQAQLAVLPAKRIRDANSRGGGDDDDDDKEDEKNDSCGGGSALACTRVVNAS 217

Query: 179 SSGLEMGNLPVEVSSTAVFRCVRMTTLDETNDQFAYQTAVNIGGHTFKGILYDHGPEQQQ 238
           SSGLE  +LP E+SS AVFRC+R++++D+ ++++AYQTAV+IGGH FKGILYD GP    
Sbjct: 218 SSGLETSHLPPEISSPAVFRCMRVSSIDDEDEEYAYQTAVSIGGHVFKGILYDQGPSSDH 277

Query: 239 QPPPPPPPNSASPDGGA-LLITAPS--TTMELPPIST--ALLDPPPPYPA---PLNTYVA 264
                      S      L+ + PS  TT  +  ++T    +DP   Y A   P N +VA
Sbjct: 278 HRYSSSLNGETSHQHHLNLMDSTPSAATTNAVTAVNTNNGSIDPSSLYTAVATPFNAFVA 337

[Close]

BLAST of Cp4.1LG01g06910 vs. TAIR10
Match: AT4G36260.1 (AT4G36260.1 Lateral root primordium (LRP) protein-related)

HSP 1 Score: 161.4 bits (407), Expect = 7.8e-40
Identity = 121/319 (37.93%), Postives = 155/319 (48.59%), Query Frame = 1


Query: 1   MAGFYPLGGGREPNYHLPTTTTTTITDGLFWYR---NYESLGIWQQQQVQQQAGEGFVYS 60
           MAG + LGG    N                WYR   N  ++     QQV Q   E  +  
Sbjct: 1   MAGIFSLGGNNNNNGDEEEENQQQQKTNWVWYRSNANTNNINPSSSQQVWQIPPEQMLMH 60

Query: 61  GDESPPRSSLVMLRSGR--------NGGGQVISCQDCGNQAKKDCLHMRCRTCCKSRGFD 120
               P + SL +    +        +     ISC+DCGNQAKKDC HMRCRTCCKSRGFD
Sbjct: 61  HHSHPQQQSLDLYPGHQIDVSDLATSSRSITISCRDCGNQAKKDCTHMRCRTCCKSRGFD 120

Query: 121 CETHVKSTWVPASKRRER----HLRSDG---------------TNLKRPRDNT------- 180
           C THV+STW+P ++RRER    H+ + G               +  KR RD T       
Sbjct: 121 CSTHVRSTWIPVARRRERQQQLHMSTSGGGGGSGSGGAGGGGSSIPKRHRDPTLPGTSSS 180

Query: 181 ----AASSGLEMG--NLPVEVSSTAVFRCVRMTTLDETND-QFAYQTAVNIGGHTFKGIL 240
               + S+GLEMG  + P EVSS A+FRCV+M+ +D+  D Q+AYQT VNIGGH FKGIL
Sbjct: 181 SRLPSHSAGLEMGEASFPGEVSSDALFRCVKMSGVDDGGDGQYAYQTTVNIGGHLFKGIL 240

Query: 241 YDHGPEQQQQP----PPPPPPNSASPDGGALLITAPSTTMELPPISTALLDPPPP---YP 267
           YD GPE               +SA   GG      P  T     +S+A+   P     Y 
Sbjct: 241 YDQGPESSYMSGGSGGSDHQSSSAGGGGGGHPFNPPVVTDGGGGVSSAMFVDPNSGGYYS 300

[Close]

BLAST of Cp4.1LG01g06910 vs. NCBI nr
Match: gi|449457620|ref|XP_004146546.1| (PREDICTED: protein SHI RELATED SEQUENCE 1-like [Cucumis sativus])

HSP 1 Score: 362.1 bits (928), Expect = 8.5e-97
Identity = 190/289 (65.74%), Postives = 210/289 (72.66%), Query Frame = 1


Query: 1   MAGFYPL----GGGREPNYHLPTTTTT-----TITDGLFWYRNYESLGIW-------QQQ 60
           MAGF+PL     GGR PNYH PT TT        T+GLFWY+NYE L  W       QQQ
Sbjct: 1   MAGFFPLDGGGSGGRVPNYHFPTPTTGGEIIHPTTEGLFWYKNYERLETWEGEEQQQQQQ 60

Query: 61  QVQQQAGEGFVYSGDESPPRSSLVMLRSGRNGGG---QVISCQDCGNQAKKDCLHMRCRT 120
             Q+Q GEGFVYSGDESP RSSLVM+RSGR GGG    V SCQDCGNQAKKDC+HMRCRT
Sbjct: 61  PAQEQGGEGFVYSGDESPARSSLVMVRSGRGGGGGGGPVTSCQDCGNQAKKDCVHMRCRT 120

Query: 121 CCKSRGFDCETHVKSTWVPASKRRERHLRSDGTNLKRPRDN--TAASSGLEMGNLPVEVS 180
           CCKSRGF+CETHVKSTWVPASKRR+RHLRSDG N KRP+D      SSGL+MGN P EV+
Sbjct: 121 CCKSRGFECETHVKSTWVPASKRRDRHLRSDGLNSKRPKDTHYHPTSSGLDMGNFPTEVT 180

Query: 181 STAVFRCVRMTTLDETNDQFAYQTAVNIGGHTFKGILYDHGPEQQQQPPPPPPPNSASPD 240
           + AVFRCVRMT+LDET+DQ+AYQTAVNIGG  FKGILYDHGPEQ     PPPPP+S+   
Sbjct: 181 TPAVFRCVRMTSLDETDDQYAYQTAVNIGGRIFKGILYDHGPEQ-----PPPPPSSS--- 240

Query: 241 GGALLITAPSTTMELPPISTALLDPPPPYPAPLNTYVAAGTQFFLPPTS 269
                             S ALLDP PPYP PL+TY+ AGTQFFLPP+S
Sbjct: 241 ------------------SAALLDPTPPYPTPLSTYITAGTQFFLPPSS 263

[Close]

BLAST of Cp4.1LG01g06910 vs. NCBI nr
Match: gi|659131063|ref|XP_008465489.1| (PREDICTED: protein SHI RELATED SEQUENCE 1-like [Cucumis melo])

HSP 1 Score: 357.5 bits (916), Expect = 2.1e-95
Identity = 189/290 (65.17%), Postives = 210/290 (72.41%), Query Frame = 1


Query: 1   MAGFYPL----GGGREPNYHLPTTTTT-----TITDGLFWYRNYESLGIW--------QQ 60
           MAGF+PL     GGR PNYH PT TT        T+GLFWY+NYE L  W        QQ
Sbjct: 1   MAGFFPLDGGGSGGRVPNYHFPTPTTGGEIIHPTTEGLFWYKNYERLETWEGEEEHQQQQ 60

Query: 61  QQVQQQAGEGFVYSGDESPPRSSLVMLRSGR---NGGGQVISCQDCGNQAKKDCLHMRCR 120
           Q  Q+Q GEGFVYSGDESP RSSLVM+RSGR   +GGG V SCQDCGNQAKKDC HMRCR
Sbjct: 61  QPAQEQGGEGFVYSGDESPARSSLVMVRSGRGGGSGGGPVTSCQDCGNQAKKDCAHMRCR 120

Query: 121 TCCKSRGFDCETHVKSTWVPASKRRERHLRSDGTNLKRPRDN--TAASSGLEMGNLPVEV 180
           TCCKSRGF+CETHVKSTWVPASKRR+R LRSDG N KRP+D      SSGL+M N P+EV
Sbjct: 121 TCCKSRGFECETHVKSTWVPASKRRDRLLRSDGLNSKRPKDTHYHPTSSGLDMANFPMEV 180

Query: 181 SSTAVFRCVRMTTLDETNDQFAYQTAVNIGGHTFKGILYDHGPEQQQQPPPPPPPNSASP 240
           ++ AVFRCVRMTTLDET+DQ+AYQTAVNIGGH FKGILYDHGPEQ     PPPPP+S+S 
Sbjct: 181 TTPAVFRCVRMTTLDETDDQYAYQTAVNIGGHIFKGILYDHGPEQ-----PPPPPSSSS- 240

Query: 241 DGGALLITAPSTTMELPPISTALLDPPPPYPAPLNTYVAAGTQFFLPPTS 269
                              + ALLD  PPYP PL+TY+ AGTQFFLPP+S
Sbjct: 241 -------------------AAALLDSTPPYPTPLSTYITAGTQFFLPPSS 265

[Close]

BLAST of Cp4.1LG01g06910 vs. NCBI nr
Match: gi|223526448|gb|EEF28724.1| (transcription factor, putative [Ricinus communis])

HSP 1 Score: 235.7 bits (600), Expect = 9.2e-59
Identity = 156/355 (43.94%), Postives = 188/355 (52.96%), Query Frame = 1


Query: 1   MAGFYPLGGG----------REPNYHLPTTTTTTITDGLFWYRN----YESLGIWQQQQV 60
           MAG + LGGG          ++ N + P   T    +  FWY+N    Y+   +WQQQQ 
Sbjct: 1   MAGLFSLGGGGGRGSNQEDDQQHNNNPPPPPTEIPQESWFWYKNEDVPYKGFELWQQQQQ 60

Query: 61  QQQ-------------------AGEGF------VYSGDESPPRSSLVMLRSGRNGGGQVI 120
           QQQ                   AG G       +   DES  RS+ +M+RS  + GG  +
Sbjct: 61  QQQEFFRHQSLQQQQQDLYSSAAGLGVGPSRSSINFSDESSSRSAFMMMRS--SSGGSSM 120

Query: 121 SCQDCGNQAKKDCLHMRCRTCCKSRGFDCETHVKSTWVPASKRRER-------------- 180
           SCQDCGNQAKKDC+HMRCRTCCKSRGFDC+THVKSTWVPASKRRER              
Sbjct: 121 SCQDCGNQAKKDCVHMRCRTCCKSRGFDCQTHVKSTWVPASKRRERQQQLVAIQQQQHQQ 180

Query: 181 --HLRSDGTNLKRPRDNTAA----------------SSGLEMGNLPVEVSSTAVFRCVRM 240
               +    N KR R+N  +                SSGLE+GN P EVSS AVFRCV++
Sbjct: 181 QQQQQQQQQNPKRLRENPTSSSLACTPATNTRLPNNSSGLELGNFPSEVSSPAVFRCVKV 240

Query: 241 TTLDETNDQFAYQTAVNIGGHTFKGILYDHGPEQQQQPPPPPPPNSASPDGGAL----LI 269
           + +DE +DQ+AYQTAVNIGGH FKGILYDHGPE      P    +S    GG L    LI
Sbjct: 241 SGIDENDDQYAYQTAVNIGGHVFKGILYDHGPESTYM--PAAETSSGGGSGGGLQPLNLI 300

[Close]

BLAST of Cp4.1LG01g06910 vs. NCBI nr
Match: gi|1000938729|ref|XP_015583530.1| (PREDICTED: protein SHORT INTERNODES isoform X1 [Ricinus communis])

HSP 1 Score: 233.0 bits (593), Expect = 6.0e-58
Identity = 152/349 (43.55%), Postives = 184/349 (52.72%), Query Frame = 1


Query: 1   MAGFYPLGGG----------REPNYHLPTTTTTTITDGLFWYRN----YESLGIWQQQQV 60
           MAG + LGGG          ++ N + P   T    +  FWY+N    Y+   +WQQQQ 
Sbjct: 1   MAGLFSLGGGGGRGSNQEDDQQHNNNPPPPPTEIPQESWFWYKNEDVPYKGFELWQQQQQ 60

Query: 61  QQQ-------------------AGEGF------VYSGDESPPRSSLVMLRSGRNGGGQVI 120
           QQQ                   AG G       +   DES  RS+ +M+RS  + GG  +
Sbjct: 61  QQQEFFRHQSLQQQQQDLYSSAAGLGVGPSRSSINFSDESSSRSAFMMMRS--SSGGSSM 120

Query: 121 SCQDCGNQAKKDCLHMRCRTCCKSRGFDCETHVKSTWVPASKRRER-------------- 180
           SCQDCGNQAKKDC+HMRCRTCCKSRGFDC+THVKSTWVPASKRRER              
Sbjct: 121 SCQDCGNQAKKDCVHMRCRTCCKSRGFDCQTHVKSTWVPASKRRERQQQLVAIQQQQHQQ 180

Query: 181 --HLRSDGTNLKRPRDNTAA----------------SSGLEMGNLPVEVSSTAVFRCVRM 240
               +    N KR R+N  +                SSGLE+GN P EVSS AVFRCV++
Sbjct: 181 QQQQQQQQQNPKRLRENPTSSSLACTPATNTRLPNNSSGLELGNFPSEVSSPAVFRCVKV 240

Query: 241 TTLDETNDQFAYQTAVNIGGHTFKGILYDHGPEQQQQPPPPPPPNSASPDGGAL----LI 263
           + +DE +DQ+AYQTAVNIGGH FKGILYDHGPE      P    +S    GG L    LI
Sbjct: 241 SGIDENDDQYAYQTAVNIGGHVFKGILYDHGPESTYM--PAAETSSGGGSGGGLQPLNLI 300

[Close]

BLAST of Cp4.1LG01g06910 vs. NCBI nr
Match: gi|743839240|ref|XP_011025892.1| (PREDICTED: protein SHI RELATED SEQUENCE 1-like [Populus euphratica])

HSP 1 Score: 231.5 bits (589), Expect = 1.7e-57
Identity = 152/336 (45.24%), Postives = 189/336 (56.25%), Query Frame = 1


Query: 1   MAGFYPLGGG------REPNYHLPTTTTTTITDGLFWYRN----YESLGIWQQQQVQQ-- 60
           MAG + LG G      +E   +     T    +  FWY++    Y+S  +WQQQQ Q+  
Sbjct: 1   MAGLFSLGRGSSSSNNQEDQQNNNNPPTEIPQESWFWYKSEDIPYKSFELWQQQQHQELL 60

Query: 61  ----QAGEGFVYSG----------------DESPPRSS-----LVMLRSGRNGGGQV--I 120
               Q  +  +YS                 DES  RS+      +M+R G +G G    I
Sbjct: 61  HQRHQNPQQDLYSSAAGLGVGPSRTSINISDESSSRSAAAAEAFMMMRPGGSGTGGAGSI 120

Query: 121 SCQDCGNQAKKDCLHMRCRTCCKSRGFDCETHVKSTWVPASKRRER-----------HLR 180
           SCQDCGNQAKKDC+HMRCRTCCKSRGF+C+THVKSTWVPASKRRER            L+
Sbjct: 121 SCQDCGNQAKKDCMHMRCRTCCKSRGFECQTHVKSTWVPASKRRERQQQLNLLQQQQQLQ 180

Query: 181 SDGTNLKRPRDNTAAS----------SGLEMGNLPVEVSSTAVFRCVRMTTLDETNDQFA 240
             G N KR R+N ++S          SGLE+GN P EVSS A+FRCVR++ +DE+ +  A
Sbjct: 181 IRGENPKRQRENPSSSLACTRLANSMSGLELGNFPSEVSSPALFRCVRVSGIDESEEMLA 240

Query: 241 YQTAVNIGGHTFKGILYDHGPEQQQQPPPPPPPNSASPDGGAL----LITAPSTT----M 269
           YQTAVNIGGH FKGILYDHGP+          P   S  GG +    LITA + T    +
Sbjct: 241 YQTAVNIGGHVFKGILYDHGPDSNYM-----APGETSSGGGGVQPLNLITAGTATGGGGV 300

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g06910 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SRS1_ARATH	5.6e-48	42.90	Protein SHI RELATED SEQUENCE 1 OS=Arabidopsis thaliana GN=SRS1 PE=1 SV=2	[more]
SHI_ARATH	1.1e-46	40.43	Protein SHORT INTERNODES OS=Arabidopsis thaliana GN=SHI PE=1 SV=1	[more]
SRS5_ARATH	1.2e-42	41.40	Protein SHI RELATED SEQUENCE 5 OS=Arabidopsis thaliana GN=SRS5 PE=2 SV=1	[more]
SRS7_ARATH	1.6e-39	43.90	Protein SHI RELATED SEQUENCE 7 OS=Arabidopsis thaliana GN=SRS7 PE=2 SV=1	[more]
SRS2_ARATH	1.4e-38	37.93	Protein SHI RELATED SEQUENCE 2 OS=Arabidopsis thaliana GN=SRS2 PE=2 SV=1	[more]

BLAST of Cp4.1LG01g06910 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KUG2_CUCSA	5.9e-97	65.74	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G043960 PE=4 SV=1	[more]
B9T5Y4_RICCO	6.4e-59	43.94	Transcription factor, putative OS=Ricinus communis GN=RCOM_0415480 PE=4 SV=1	[more]
U5G8I9_POPTR	1.0e-56	44.78	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s13610g PE=4 SV=1	[more]
A0A067K8V2_JATCU	5.6e-55	43.10	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13664 PE=4 SV=1	[more]
A0A0D2QE61_GOSRA	3.7e-54	45.45	Uncharacterized protein OS=Gossypium raimondii GN=B456_003G011800 PE=4 SV=1	[more]

BLAST of Cp4.1LG01g06910 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G51060.1	3.2e-49	42.90	Lateral root primordium (LRP) protein-related	[more]
AT5G66350.1	6.0e-48	40.43	Lateral root primordium (LRP) protein-related	[more]
AT1G75520.1	6.8e-44	41.40	SHI-related sequence 5	[more]
AT1G19790.1	9.2e-41	43.90	SHI-related sequence 7	[more]
AT4G36260.1	7.8e-40	37.93	Lateral root primordium (LRP) protein-related	[more]

BLAST of Cp4.1LG01g06910 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449457620\|ref\|XP_004146546.1\|	8.5e-97	65.74	PREDICTED: protein SHI RELATED SEQUENCE 1-like [Cucumis sativus]	[more]
gi\|659131063\|ref\|XP_008465489.1\|	2.1e-95	65.17	PREDICTED: protein SHI RELATED SEQUENCE 1-like [Cucumis melo]	[more]
gi\|223526448\|gb\|EEF28724.1\|	9.2e-59	43.94	transcription factor, putative [Ricinus communis]	[more]
gi\|1000938729\|ref\|XP_015583530.1\|	6.0e-58	43.55	PREDICTED: protein SHORT INTERNODES isoform X1 [Ricinus communis]	[more]
gi\|743839240\|ref\|XP_011025892.1\|	1.7e-57	45.24	PREDICTED: protein SHI RELATED SEQUENCE 1-like [Populus euphratica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007818	SHI
IPR006511	SHI_C
IPR006510	Znf_LRP1

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006661	phosphatidylinositol biosynthetic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0016874	ligase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g06910.1	Cp4.1LG01g06910.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006510	Zinc finger, lateral root primordium type 1	TIGRFAMs	TIGR01623	TIGR01623	coord: 82..124 score: 3.9
IPR006511	Lateral Root Primordium type 1, C-terminal	TIGRFAMs	TIGR01624	TIGR01624	coord: 154..201 score: 6.3
IPR007818	Protein of unknown function DUF702	PFAM	PF05142	DUF702	coord: 81..202 score: 5.7
None	No IPR available	PANTHER	PTHR31604	FAMILY NOT NAMED	coord: 1..268 score: 2.1E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG01g06910	Cucsa.201140	Cucumber (Gy14) v1	cgycpeB0569
Cp4.1LG01g06910	CmaCh04G007690	Cucurbita maxima (Rimu)	cmacpeB731
Cp4.1LG01g06910	CmaCh07G004520	Cucurbita maxima (Rimu)	cmacpeB876
Cp4.1LG01g06910	CmaCh16G006400	Cucurbita maxima (Rimu)	cmacpeB354
Cp4.1LG01g06910	CmoCh07G004500	Cucurbita moschata (Rifu)	cmocpeB813
Cp4.1LG01g06910	CmoCh16G006990	Cucurbita moschata (Rifu)	cmocpeB316
Cp4.1LG01g06910	CmoCh04G008220	Cucurbita moschata (Rifu)	cmocpeB684
Cp4.1LG01g06910	Cla014559	Watermelon (97103) v1	cpewmB420
Cp4.1LG01g06910	Csa4G043960	Cucumber (Chinese Long) v2	cpecuB400
Cp4.1LG01g06910	ClCG07G008820	Watermelon (Charleston Gray)	cpewcgB412
Cp4.1LG01g06910	CSPI04G05220	Wild cucumber (PI 183967)	cpecpiB397
Cp4.1LG01g06910	Lsi07G002300	Bottle gourd (USVL1VR-Ls)	cpelsiB373
Cp4.1LG01g06910	MELO3C007877.2	Melon (DHL92) v3.6.1	cpemedB510
Cp4.1LG01g06910	CsaV3_6G046800	Cucumber (Chinese Long) v3	cpecucB0580
Cp4.1LG01g06910	CsaV3_4G005360	Cucumber (Chinese Long) v3	cpecucB0497
Cp4.1LG01g06910	Bhi01G001886	Wax gourd	cpewgoB0522
Cp4.1LG01g06910	CsGy6G031000	Cucumber (Gy14) v2	cgybcpeB807
Cp4.1LG01g06910	CsGy4G005130	Cucumber (Gy14) v2	cgybcpeB502
Cp4.1LG01g06910	Carg05760	Silver-seed gourd	carcpeB1418
Cp4.1LG01g06910	Carg14168	Silver-seed gourd	carcpeB1303

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG01g06910	Cp4.1LG10g00380	Cucurbita pepo (Zucchini)	cpecpeB073
Cp4.1LG01g06910	Cp4.1LG14g01720	Cucurbita pepo (Zucchini)	cpecpeB237
Cp4.1LG01g06910	Cp4.1LG19g09000	Cucurbita pepo (Zucchini)	cpecpeB385

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG01g06910	Cucurbita pepo (Zucchini)	cpecpeB233
Cp4.1LG01g06910	Cucurbita maxima (Rimu)	cmacpeB350
Cp4.1LG01g06910	Cucurbita maxima (Rimu)	cmacpeB720
Cp4.1LG01g06910	Cucurbita moschata (Rifu)	cmocpeB673
Cp4.1LG01g06910	Melon (DHL92) v3.5.1	cpemeB424
Cp4.1LG01g06910	Melon (DHL92) v3.6.1	cpemedB496
Cp4.1LG01g06910	Silver-seed gourd	carcpeB1302
Cp4.1LG01g06910	Wax gourd	cpewgoB0510