CmoCh16G006990 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh16G006990
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	SHI-related sequence 5
Location	Cmo_Chr16 : 3464046 .. 3465386 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGGTAATCAATCATCTCTGCAACAAAATCAGAACATACGAAGAAGAAAGCGTTTTGTTCTTTATTTAAGTTAGCGCCACCGTTCCCCATGGCGGCGTTGCAGGTTCCATTTTTACACACACACACAGAATCTGATTCCCAATTTAATTCATACCCTTTTCTCCGCCCTGCCTTCCGATCGCCGTTCAGAGGCTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTGATATGGATTTTAATTCAAAATTAGGCATAATCTCTCCGGTGGAATTATGGCCGGTTTTTTCCCACTAGGCGGCGGAGGCGGCGGCAGCAGCGGCGGTGAGATTATTCATCCAACCGACGGATTACTTTGGTACAAGAATTATGAGAGCTTCGAAACAGAACAACAGCAACAAGGTGGAGAAGGGTTTGTTTACTCCGGCGAAAATTCGCCGGCGAGATCGTCGCTGGTGATGGTGAGATCCGGCGGAGGGAAGGTTATTAGCTGCCAAGATTGTGGGAATCAAGCGAAAAAAGATTGCGTTCATATGCGATGTAGAACATGTTGTAAAAGCCGTGGGTTTTTGTGTGAAACCCACGTTAAAAGTACATGGGTACCAGCCTCCAAACGCCGTGAGCGGCTGATCCGTACTGCCGGCGGTGACTCCAAACGCCCTAGAGACACCCACGCCGCTTCTTCAGGTACAATTAATTTCTTATTTTTAATTCAATTTTAGTTTTTGAACAAAACCCACATCGATTTTGTTCATGATTTACAGAACCAATTTTTTTTTTTGGTTTTAGGGTTTGAAATAGGGAATTTCCCGGCGGAAGTAAACTCCACGGCGGTGTTCCGATGCGTACGGATGACAACATTAGACGAACCCACCGGCACCGATCAATATGCTTATCAAACCGCCGTCAACATCGGTGGCCATATCTTCAAGGGCATTCTTTACGACCACGGCCCTGATCAACAACACCACCACCACAACCCACCCATCTCCGCCTCCCCGGACGGCGGAGCCCTCCTCATCACCACCGCCGAGTCCGCCGCACCGCTGGATCCTCCGCCGTCATACCCAGCTCCACTCAACAGCTACATCCCCGCCGGTACGCAATTTTTTCAGCCCCCGACATCTTAGCCGACGGTTTTCCGTTAGGGCATTGTGATTAAAAGAGAAATAGTGGAAATTGCAGGCAAAGTATATAATTTTTCATGAATAAATTTAAAAAAAACTGTAATTTTTATTTTATTTTTTGCATTAATTTGCCGCCATTGTTGGAACTTGGTGTCCTGCTTCCCCGTACGGTCGCCGGCGTTCGAATTTCTACTTAATTCGCCGATTTAACCCTAACC

mRNA sequence

GGGTAATCAATCATCTCTGCAACAAAATCAGAACATACGAAGAAGAAAGCGTTTTGTTCTTTATTTAAGTTAGCGCCACCGTTCCCCATGGCGGCGTTGCAGGCATAATCTCTCCGGTGGAATTATGGCCGGTTTTTTCCCACTAGGCGGCGGAGGCGGCGGCAGCAGCGGCGGTGAGATTATTCATCCAACCGACGGATTACTTTGGTACAAGAATTATGAGAGCTTCGAAACAGAACAACAGCAACAAGGTGGAGAAGGGTTTGTTTACTCCGGCGAAAATTCGCCGGCGAGATCGTCGCTGGTGATGGTGAGATCCGGCGGAGGGAAGGTTATTAGCTGCCAAGATTGTGGGAATCAAGCGAAAAAAGATTGCGTTCATATGCGATGTAGAACATGTTGTAAAAGCCGTGGGTTTTTGTGTGAAACCCACGTTAAAAGTACATGGGTACCAGCCTCCAAACGCCGTGAGCGGCTGATCCGTACTGCCGGCGGTGACTCCAAACGCCCTAGAGACACCCACGCCGCTTCTTCAGGGTTTGAAATAGGGAATTTCCCGGCGGAAGTAAACTCCACGGCGGTGTTCCGATGCGTACGGATGACAACATTAGACGAACCCACCGGCACCGATCAATATGCTTATCAAACCGCCGTCAACATCGGTGGCCATATCTTCAAGGGCATTCTTTACGACCACGGCCCTGATCAACAACACCACCACCACAACCCACCCATCTCCGCCTCCCCGGACGGCGGAGCCCTCCTCATCACCACCGCCGAGTCCGCCGCACCGCTGGATCCTCCGCCGTCATACCCAGCTCCACTCAACAGCTACATCCCCGCCGGTACGCAATTTTTTCAGCCCCCGACATCTTAGCCGACGGTTTTCCGTTAGGGCATTGTGATTAAAAGAGAAATAGTGGAAATTGCAGGCAAAGTATATAATTTTTCATGAATAAATTTAAAAAAAACTGTAATTTTTATTTTATTTTTTGCATTAATTTGCCGCCATTGTTGGAACTTGGTGTCCTGCTTCCCCGTACGGTCGCCGGCGTTCGAATTTCTACTTAATTCGCCGATTTAACCCTAACC

Coding sequence (CDS)

ATGGCCGGTTTTTTCCCACTAGGCGGCGGAGGCGGCGGCAGCAGCGGCGGTGAGATTATTCATCCAACCGACGGATTACTTTGGTACAAGAATTATGAGAGCTTCGAAACAGAACAACAGCAACAAGGTGGAGAAGGGTTTGTTTACTCCGGCGAAAATTCGCCGGCGAGATCGTCGCTGGTGATGGTGAGATCCGGCGGAGGGAAGGTTATTAGCTGCCAAGATTGTGGGAATCAAGCGAAAAAAGATTGCGTTCATATGCGATGTAGAACATGTTGTAAAAGCCGTGGGTTTTTGTGTGAAACCCACGTTAAAAGTACATGGGTACCAGCCTCCAAACGCCGTGAGCGGCTGATCCGTACTGCCGGCGGTGACTCCAAACGCCCTAGAGACACCCACGCCGCTTCTTCAGGGTTTGAAATAGGGAATTTCCCGGCGGAAGTAAACTCCACGGCGGTGTTCCGATGCGTACGGATGACAACATTAGACGAACCCACCGGCACCGATCAATATGCTTATCAAACCGCCGTCAACATCGGTGGCCATATCTTCAAGGGCATTCTTTACGACCACGGCCCTGATCAACAACACCACCACCACAACCCACCCATCTCCGCCTCCCCGGACGGCGGAGCCCTCCTCATCACCACCGCCGAGTCCGCCGCACCGCTGGATCCTCCGCCGTCATACCCAGCTCCACTCAACAGCTACATCCCCGCCGGTACGCAATTTTTTCAGCCCCCGACATCTTAG

Homology

[Close]

BLAST of CmoCh16G006990 vs. Swiss-Prot
Match: SRS1_ARATH (Protein SHI RELATED SEQUENCE 1 OS=Arabidopsis thaliana GN=SRS1 PE=1 SV=2)

HSP 1 Score: 188.0 bits (476), Expect = 1.3e-46
Identity = 118/264 (44.70%), Postives = 154/264 (58.33%), Query Frame = 1


Query: 47  FVYSGENSPA----RSSLVMVRSGGGKV----ISCQDCGNQAKKDCVHMRCRTCCKSRGF 106
           F  SGE S A     ++++M+RSGG       +SCQDCGNQAKKDC HMRCRTCCKSRGF
Sbjct: 110 FDISGETSTAGAGRAAAMMMIRSGGSGGGSGGVSCQDCGNQAKKDCSHMRCRTCCKSRGF 169

Query: 107 LCETHVKSTWVPASKRRERLIRTA---------GGDS--KRPRDTHAAS----------- 166
            C THV+STWVPA+KRRER  + A          G+S  KR R+   A+           
Sbjct: 170 ECSTHVRSTWVPAAKRRERQQQLATVQPQTQLPRGESVPKRHRENLPATSSSLVCTRIPS 229

Query: 167 -SGFEIGNFPAEVNSTAVFRCVRMTTLDEPTGTDQYAYQTAVNIGGHIFKGILYDHGPDQ 226
            SG E+GNFPAEV+S+AVFRCVR++++++  G +++AYQTAV+IGGHIFKGILYD GP  
Sbjct: 230 HSGLEVGNFPAEVSSSAVFRCVRVSSVED--GEEEFAYQTAVSIGGHIFKGILYDLGPGS 289

Query: 227 QHHHHNPPISASPD--------------GGALLITTAESAAP---------------LDP 251
                   ++A                  G++ + TA S+ P               +DP
Sbjct: 290 SGGGGYNVVAAGESSSGGGGAQQLNLITAGSVTVATASSSTPNLGGIGSSSAAAATYIDP 349

[Close]

BLAST of CmoCh16G006990 vs. Swiss-Prot
Match: SRS5_ARATH (Protein SHI RELATED SEQUENCE 5 OS=Arabidopsis thaliana GN=SRS5 PE=2 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 1.4e-45
Identity = 134/350 (38.29%), Postives = 169/350 (48.29%), Query Frame = 1


Query: 1   MAGFFPLGGGGGGSSGG-------------------------EIIHPTDGL-LWYKNYES 60
           MAGFF LGG    S+                           EI +   G  +W   Y  
Sbjct: 1   MAGFFYLGGRDNNSNNNKQDHHQVDKDHHHQDKSNYLYLYKDEIYNNNKGFEIWPPQYFQ 60

Query: 61  FETEQQQQGGE------------GFVYSGE-----NSPARS------------SLVMVRS 120
            +  QQQQ  +            G V SG      N+ +RS               + R 
Sbjct: 61  QQEHQQQQQQQQHASAPANFYSFGMVPSGSSSNNNNNRSRSLYFNVVSDHEPGGFTVTRQ 120

Query: 121 GGGKVISCQDCGNQAKKDCVHMRCRTCCKSRGFLCETHVKSTWVPASKRRERLIRTA--- 180
           GG   ++CQDCGNQAKKDC HMRCRTCCKSRGF C+THVKSTWVPA+KRRERL + A   
Sbjct: 121 GG---MNCQDCGNQAKKDCPHMRCRTCCKSRGFHCQTHVKSTWVPAAKRRERLAQLASLQ 180

Query: 181 -------------------GGDSKRPRDTHA---------------ASSGFEIG-NFPAE 240
                              GGD+   +D                  ++SG E+  + P E
Sbjct: 181 HHSASSRETQNAKRLREASGGDNNDDKDHSGGGGSALANTRVVNANSNSGLEVSQHLPPE 240

Query: 241 VNSTAVFRCVRMTTLDEPTGTDQYAYQTAVNIGGHIFKGILYDHGPDQQHHHHNPPISAS 251
           VNS A+FRCVR+++++E      YAYQTAVNIGGHIFKGILYD GP+ Q +HH   ++++
Sbjct: 241 VNSPAIFRCVRVSSIEEDEDDQAYAYQTAVNIGGHIFKGILYDQGPEHQDNHHLNLLAST 300

[Close]

BLAST of CmoCh16G006990 vs. Swiss-Prot
Match: SHI_ARATH (Protein SHORT INTERNODES OS=Arabidopsis thaliana GN=SHI PE=1 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 3.0e-43
Identity = 129/338 (38.17%), Postives = 169/338 (50.00%), Query Frame = 1


Query: 1   MAGFFPLGGGGGGSS--------GGEIIHPTDGLLWYKNYES------------------ 60
           MAGFF LG GGGG++               T+  LW +N  S                  
Sbjct: 1   MAGFFSLGHGGGGNTPDNHRTNTNNPSSSGTESWLWCRNPNSNADGGEAGPSYKGTLELW 60

Query: 61  ---------FETEQQQQ---------GGEGFVYSGEN--SPARSSLVMVRSGGGKV-ISC 120
                    F+ +QQQQ          G G   S  +    +  +L+M+RSG G    SC
Sbjct: 61  QHPNNQEIIFQQQQQQQQRLDLYTSAAGLGVGPSNRSLIETSGGALMMMRSGSGSGGPSC 120

Query: 121 QDCGNQAKKDCVHMRCRTCCKSRGFLCETHVKSTWVPASKRRERLIRTAGGDS------- 180
           QDCGNQ+KKDC HMRCRTCCKSRG  C THVKSTWVPA+KRRER  + + G         
Sbjct: 121 QDCGNQSKKDCSHMRCRTCCKSRGLDCPTHVKSTWVPAAKRRERQQQLSTGQQPQQLGGS 180

Query: 181 --KRPRDTHAA--------------SSGFEIGNFPAEVNSTAVFRCVRMTTLDEPTGTDQ 240
             KR R+   A              +SG E+GNFP EV+S+AVFRCVR++++D+    ++
Sbjct: 181 VPKRQRERIPARSTSMAYTRIPSNNTSGLEVGNFPPEVSSSAVFRCVRVSSVDDE--EEE 240

Query: 241 YAYQTAVNIGGHIFKGILYDHGPDQQHHHHNPPISASPDGGAL---LITTAESAAPLDPP 246
           YAY+TAV+IGGH+FKG+LYD GP ++         +S  GG+    LIT   SA+   P 
Sbjct: 241 YAYKTAVSIGGHVFKGVLYDQGPAER---------SSSGGGSQPLNLITAGPSASSSSPN 300

[Close]

BLAST of CmoCh16G006990 vs. Swiss-Prot
Match: SRS7_ARATH (Protein SHI RELATED SEQUENCE 7 OS=Arabidopsis thaliana GN=SRS7 PE=2 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 3.3e-42
Identity = 103/248 (41.53%), Postives = 135/248 (54.44%), Query Frame = 1


Query: 52  ENSPARSS---LVMVRSGGGKVISCQDCGNQAKKDCVHMRCRTCCKSRGFLCETHVKSTW 111
           ++ P RSS     + R G    ++CQDCGNQAKKDC HMRCRTCCKSRGF C+THVKSTW
Sbjct: 98  DHEPVRSSTGGFTVTRQGN---MNCQDCGNQAKKDCPHMRCRTCCKSRGFDCQTHVKSTW 157

Query: 112 VPASKRRERLIRTAGGDSKRPRDT---------------------------------HAA 171
           V A+KRRER  + A   +KR RD                                  +A+
Sbjct: 158 VSAAKRRERQAQLAVLPAKRIRDANSRGGGDDDDDDKEDEKNDSCGGGSALACTRVVNAS 217

Query: 172 SSGFEIGNFPAEVNSTAVFRCVRMTTLDEPTGTDQYAYQTAVNIGGHIFKGILYDHGPDQ 231
           SSG E  + P E++S AVFRC+R++++D+    ++YAYQTAV+IGGH+FKGILYD GP  
Sbjct: 218 SSGLETSHLPPEISSPAVFRCMRVSSIDDE--DEEYAYQTAVSIGGHVFKGILYDQGPSS 277

Query: 232 QHH-------------HHNPPISASPDGGALLITTAESA--APLDPPPSYPA---PLNSY 246
            HH             HH   + ++P        TA +     +DP   Y A   P N++
Sbjct: 278 DHHRYSSSLNGETSHQHHLNLMDSTPSAATTNAVTAVNTNNGSIDPSSLYTAVATPFNAF 337

[Close]

BLAST of CmoCh16G006990 vs. Swiss-Prot
Match: SRS2_ARATH (Protein SHI RELATED SEQUENCE 2 OS=Arabidopsis thaliana GN=SRS2 PE=2 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 8.4e-38
Identity = 119/326 (36.50%), Postives = 156/326 (47.85%), Query Frame = 1


Query: 1   MAGFFPLGGGGGGSSGGEIIHPTD---GLLWYK---NYESFETEQQQQ----GGEGFVYS 60
           MAG F LGG    +   E  +        +WY+   N  +      QQ      E  +  
Sbjct: 1   MAGIFSLGGNNNNNGDEEEENQQQQKTNWVWYRSNANTNNINPSSSQQVWQIPPEQMLMH 60

Query: 61  GENSPARSSLVM-----------VRSGGGKVISCQDCGNQAKKDCVHMRCRTCCKSRGFL 120
             + P + SL +             S     ISC+DCGNQAKKDC HMRCRTCCKSRGF 
Sbjct: 61  HHSHPQQQSLDLYPGHQIDVSDLATSSRSITISCRDCGNQAKKDCTHMRCRTCCKSRGFD 120

Query: 121 CETHVKSTWVPASKRRERL----IRTAGGDS---------------KRPRD--------- 180
           C THV+STW+P ++RRER     + T+GG                 KR RD         
Sbjct: 121 CSTHVRSTWIPVARRRERQQQLHMSTSGGGGGSGSGGAGGGGSSIPKRHRDPTLPGTSSS 180

Query: 181 --THAASSGFEIG--NFPAEVNSTAVFRCVRMTTLDEPTGTDQYAYQTAVNIGGHIFKGI 240
               + S+G E+G  +FP EV+S A+FRCV+M+ +D+  G  QYAYQT VNIGGH+FKGI
Sbjct: 181 SRLPSHSAGLEMGEASFPGEVSSDALFRCVKMSGVDD-GGDGQYAYQTTVNIGGHLFKGI 240

Query: 241 LYDHGPDQQH---------------------HHHNPPISASPDGGALLITTAESAAPLDP 249
           LYD GP+  +                     H  NPP+     GG        SA  +DP
Sbjct: 241 LYDQGPESSYMSGGSGGSDHQSSSAGGGGGGHPFNPPVVTDGGGG------VSSAMFVDP 300

[Close]

BLAST of CmoCh16G006990 vs. TrEMBL
Match: A0A0A0KUG2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G043960 PE=4 SV=1)

HSP 1 Score: 326.2 bits (835), Expect = 3.4e-86
Identity = 184/281 (65.48%), Postives = 202/281 (71.89%), Query Frame = 1


Query: 1   MAGFFPLGGGGGG-----------SSGGEIIHPT-DGLLWYKNYESFET----EQQQQ-- 60
           MAGFFPL GGG G           ++GGEIIHPT +GL WYKNYE  ET    EQQQQ  
Sbjct: 1   MAGFFPLDGGGSGGRVPNYHFPTPTTGGEIIHPTTEGLFWYKNYERLETWEGEEQQQQQQ 60

Query: 61  -----GGEGFVYSGENSPARSSLVMVRSG------GGKVISCQDCGNQAKKDCVHMRCRT 120
                GGEGFVYSG+ SPARSSLVMVRSG      GG V SCQDCGNQAKKDCVHMRCRT
Sbjct: 61  PAQEQGGEGFVYSGDESPARSSLVMVRSGRGGGGGGGPVTSCQDCGNQAKKDCVHMRCRT 120

Query: 121 CCKSRGFLCETHVKSTWVPASKRRERLIRTAGGDSKRPRDT--HAASSGFEIGNFPAEVN 180
           CCKSRGF CETHVKSTWVPASKRR+R +R+ G +SKRP+DT  H  SSG ++GNFP EV 
Sbjct: 121 CCKSRGFECETHVKSTWVPASKRRDRHLRSDGLNSKRPKDTHYHPTSSGLDMGNFPTEVT 180

Query: 181 STAVFRCVRMTTLDEPTGTDQYAYQTAVNIGGHIFKGILYDHGPDQQHHHHNPPISASPD 240
           + AVFRCVRMT+LDE    DQYAYQTAVNIGG IFKGILYDHGP+Q      PP S+S  
Sbjct: 181 TPAVFRCVRMTSLDET--DDQYAYQTAVNIGGRIFKGILYDHGPEQP----PPPPSSS-- 240

Query: 241 GGALLITTAESAAPLDPPPSYPAPLNSYIPAGTQFFQPPTS 251
                     SAA LDP P YP PL++YI AGTQFF PP+S
Sbjct: 241 ----------SAALLDPTPPYPTPLSTYITAGTQFFLPPSS 263

[Close]

BLAST of CmoCh16G006990 vs. TrEMBL
Match: A0A0A0KGL4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G504650 PE=4 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 6.9e-55
Identity = 156/337 (46.29%), Postives = 188/337 (55.79%), Query Frame = 1


Query: 1   MAGFFPLGGGGGG-------SSGGEIIHPT--DGLLWYK--NYESFETEQQQQGGEGF-- 60
           M+GFF LGGGGGG       +   + IHP     L WYK  N E ++ +QQQQ       
Sbjct: 1   MSGFFTLGGGGGGRDEEQNNNRPNQFIHPPPDSSLFWYKAGNVELWQQQQQQQHHHHHQE 60

Query: 61  ----------------------VYSGENSPARS-SLVMVRSG-GGKVISCQDCGNQAKKD 120
                                 V + + S +RS + +M+ SG GG  ISCQDCGNQAKKD
Sbjct: 61  QPLFQTQSRTTTTTTPYSAPLAVRNSDESSSRSGNFMMISSGSGGGGISCQDCGNQAKKD 120

Query: 121 CVHMRCRTCCKSRGFLCETHVKSTWVPASKRRERLIRTA-----------------GGDS 180
           C HMRCRTCCKSRGF CETHVKSTWVPA+KRRER  + A                 GGD+
Sbjct: 121 CSHMRCRTCCKSRGFHCETHVKSTWVPAAKRRERQDKLAALQTHHHHHHQQQLQLHGGDN 180

Query: 181 --KRPRDTHAAS------------SGFEIGNFPAEVNSTAVFRCVRMTTLDEPTGTDQYA 240
             KR RD +++S            SG EIGNFPAE+NS AVFRCVR+++ D+    DQYA
Sbjct: 181 NPKRHRDYNSSSLACTLIPTNNNTSGLEIGNFPAELNSPAVFRCVRVSSADDT--DDQYA 240

Query: 241 YQTAVNIGGHIFKGILYDHGPDQQHHHHNPPISASPDG--------------GALLITT- 251
           YQTAVNIGGH+FKGILYD GP+   +++ PP   S  G              GA   TT 
Sbjct: 241 YQTAVNIGGHVFKGILYDQGPE---NNYIPPGETSSGGGGSSSGVQPLNFIAGAADATTG 300

[Close]

BLAST of CmoCh16G006990 vs. TrEMBL
Match: B9T5Y4_RICCO (Transcription factor, putative OS=Ricinus communis GN=RCOM_0415480 PE=4 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 1.1e-52
Identity = 152/353 (43.06%), Postives = 180/353 (50.99%), Query Frame = 1


Query: 1   MAGFFPLGGGGGGSSGGEIIH-------------PTDGLLWYKN----YESFET--EQQQ 60
           MAG F LGGGGG  S  E                P +   WYKN    Y+ FE   +QQQ
Sbjct: 1   MAGLFSLGGGGGRGSNQEDDQQHNNNPPPPPTEIPQESWFWYKNEDVPYKGFELWQQQQQ 60

Query: 61  QGGEGF-----------VYSG----------------ENSPARSSLVMVRSG-GGKVISC 120
           Q  E F           +YS                 + S +RS+ +M+RS  GG  +SC
Sbjct: 61  QQQEFFRHQSLQQQQQDLYSSAAGLGVGPSRSSINFSDESSSRSAFMMMRSSSGGSSMSC 120

Query: 121 QDCGNQAKKDCVHMRCRTCCKSRGFLCETHVKSTWVPASKRRERLIRTAG---------- 180
           QDCGNQAKKDCVHMRCRTCCKSRGF C+THVKSTWVPASKRRER  +             
Sbjct: 121 QDCGNQAKKDCVHMRCRTCCKSRGFDCQTHVKSTWVPASKRRERQQQLVAIQQQQHQQQQ 180

Query: 181 ------GDSKRPRDTHAA----------------SSGFEIGNFPAEVNSTAVFRCVRMTT 240
                  + KR R+   +                SSG E+GNFP+EV+S AVFRCV+++ 
Sbjct: 181 QQQQQQQNPKRLRENPTSSSLACTPATNTRLPNNSSGLELGNFPSEVSSPAVFRCVKVSG 240

Query: 241 LDEPTGTDQYAYQTAVNIGGHIFKGILYDHGPDQQHHHHNPPISASPDGGAL----LITT 251
           +DE    DQYAYQTAVNIGGH+FKGILYDHGP+  +       S    GG L    LIT 
Sbjct: 241 IDE--NDDQYAYQTAVNIGGHVFKGILYDHGPESTYMPAAETSSGGGSGGGLQPLNLITA 300

[Close]

BLAST of CmoCh16G006990 vs. TrEMBL
Match: U5L3K7_SOLLC (Expression of terpenoids 3 (Fragment) OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 2.7e-51
Identity = 126/249 (50.60%), Postives = 149/249 (59.84%), Query Frame = 1


Query: 58  SSLVMVRSGGGKVISCQDCGNQAKKDCVHMRCRTCCKSRGFLCETHVKSTWVPASKRRER 117
           S LVM+RSGGG  ISCQDCGNQAKKDC HMRCRTCCKSRGF C+THV+STWVPA+KRRER
Sbjct: 13  SGLVMMRSGGGG-ISCQDCGNQAKKDCPHMRCRTCCKSRGFQCQTHVRSTWVPAAKRRER 72

Query: 118 ------------------------LIRTAGGDSKRPRDTHAAS------------SGFEI 177
                                    ++    + KRPR+  +AS            SG E+
Sbjct: 73  QQQLSTLQQQQEEEEQQQQQQQQQTLQLHRDNPKRPREDPSASSLVCTRILPSSTSGLEV 132

Query: 178 GNFPAEVNSTAVFRCVRMTTLDEPTGTDQYAYQTAVNIGGHIFKGILYDHGPDQQH---- 237
           GNFPA+V S AVF CVRM+++D+    DQ+AYQTAVNIGGH+FKGILYD GPD Q+    
Sbjct: 133 GNFPAKVTSNAVFHCVRMSSVDD--ADDQFAYQTAVNIGGHVFKGILYDQGPDNQYMGGG 192

Query: 238 ----------HHHN------PPISASPDGGALLITTAESAAPLDPPPSYPAPLNSYIPAG 251
                     H HN         SA+  GGA     A  A+P   P  YPAPLN+++ AG
Sbjct: 193 ESSSGGGSASHQHNLIGAAGTATSAATSGGA-----APEASPYLDPSLYPAPLNTFM-AG 252

[Close]

BLAST of CmoCh16G006990 vs. TrEMBL
Match: K4BAY3_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 3.5e-51
Identity = 149/354 (42.09%), Postives = 178/354 (50.28%), Query Frame = 1


Query: 1   MAGFFPLGGGGGGSSGGE-----IIHPTDGLLWYKN---------YESFETEQQQQG--- 60
           MAGFF LGGG   ++  +       +P      Y+N         Y  FE  Q       
Sbjct: 8   MAGFFSLGGGAAATTSQDQQQETTNNPESNWFLYRNDHHQELPTTYRGFELWQNTNSQPQ 67

Query: 61  -------------------GEGFVYSGENSPAR------------SSLVMVRSGGGKVIS 120
                              G G  +SG  S AR            S LVM+RSGGG  IS
Sbjct: 68  IRNPINPLQDLYPTAAVGLGIGPSHSGFPSMARPNHDPPSGGGGGSGLVMMRSGGGG-IS 127

Query: 121 CQDCGNQAKKDCVHMRCRTCCKSRGFLCETHVKSTWVPASKRRER--------------- 180
           CQDCGNQAKKDC HMRCRTCCKSRGF C+THV+STWVPA+KRRER               
Sbjct: 128 CQDCGNQAKKDCPHMRCRTCCKSRGFQCQTHVRSTWVPAAKRRERQQQLSTLQQQQEEEE 187

Query: 181 ---------LIRTAGGDSKRPRDTHAAS------------SGFEIGNFPAEVNSTAVFRC 240
                     ++    + KRPR+  +AS            SG E+GNFPA+V S AVF C
Sbjct: 188 QQQQQQQQQTLQLHRDNPKRPREDPSASSLVCTRILPSSTSGLEVGNFPAKVTSNAVFHC 247

Query: 241 VRMTTLDEPTGTDQYAYQTAVNIGGHIFKGILYDHGPDQQH--------------HHHN- 251
           VRM+++D+    DQ+AYQTAVNIGGH+FKGILYD GPD Q+              H HN 
Sbjct: 248 VRMSSVDD--ADDQFAYQTAVNIGGHVFKGILYDQGPDNQYMGGGESSSGGGSASHQHNL 307

[Close]

BLAST of CmoCh16G006990 vs. TAIR10
Match: AT3G51060.1 (AT3G51060.1 Lateral root primordium (LRP) protein-related)

HSP 1 Score: 188.0 bits (476), Expect = 7.3e-48
Identity = 118/264 (44.70%), Postives = 154/264 (58.33%), Query Frame = 1


Query: 47  FVYSGENSPA----RSSLVMVRSGGGKV----ISCQDCGNQAKKDCVHMRCRTCCKSRGF 106
           F  SGE S A     ++++M+RSGG       +SCQDCGNQAKKDC HMRCRTCCKSRGF
Sbjct: 110 FDISGETSTAGAGRAAAMMMIRSGGSGGGSGGVSCQDCGNQAKKDCSHMRCRTCCKSRGF 169

Query: 107 LCETHVKSTWVPASKRRERLIRTA---------GGDS--KRPRDTHAAS----------- 166
            C THV+STWVPA+KRRER  + A          G+S  KR R+   A+           
Sbjct: 170 ECSTHVRSTWVPAAKRRERQQQLATVQPQTQLPRGESVPKRHRENLPATSSSLVCTRIPS 229

Query: 167 -SGFEIGNFPAEVNSTAVFRCVRMTTLDEPTGTDQYAYQTAVNIGGHIFKGILYDHGPDQ 226
            SG E+GNFPAEV+S+AVFRCVR++++++  G +++AYQTAV+IGGHIFKGILYD GP  
Sbjct: 230 HSGLEVGNFPAEVSSSAVFRCVRVSSVED--GEEEFAYQTAVSIGGHIFKGILYDLGPGS 289

Query: 227 QHHHHNPPISASPD--------------GGALLITTAESAAP---------------LDP 251
                   ++A                  G++ + TA S+ P               +DP
Sbjct: 290 SGGGGYNVVAAGESSSGGGGAQQLNLITAGSVTVATASSSTPNLGGIGSSSAAAATYIDP 349

[Close]

BLAST of CmoCh16G006990 vs. TAIR10
Match: AT1G75520.1 (AT1G75520.1 SHI-related sequence 5)

HSP 1 Score: 184.5 bits (467), Expect = 8.0e-47
Identity = 134/350 (38.29%), Postives = 169/350 (48.29%), Query Frame = 1


Query: 1   MAGFFPLGGGGGGSSGG-------------------------EIIHPTDGL-LWYKNYES 60
           MAGFF LGG    S+                           EI +   G  +W   Y  
Sbjct: 1   MAGFFYLGGRDNNSNNNKQDHHQVDKDHHHQDKSNYLYLYKDEIYNNNKGFEIWPPQYFQ 60

Query: 61  FETEQQQQGGE------------GFVYSGE-----NSPARS------------SLVMVRS 120
            +  QQQQ  +            G V SG      N+ +RS               + R 
Sbjct: 61  QQEHQQQQQQQQHASAPANFYSFGMVPSGSSSNNNNNRSRSLYFNVVSDHEPGGFTVTRQ 120

Query: 121 GGGKVISCQDCGNQAKKDCVHMRCRTCCKSRGFLCETHVKSTWVPASKRRERLIRTA--- 180
           GG   ++CQDCGNQAKKDC HMRCRTCCKSRGF C+THVKSTWVPA+KRRERL + A   
Sbjct: 121 GG---MNCQDCGNQAKKDCPHMRCRTCCKSRGFHCQTHVKSTWVPAAKRRERLAQLASLQ 180

Query: 181 -------------------GGDSKRPRDTHA---------------ASSGFEIG-NFPAE 240
                              GGD+   +D                  ++SG E+  + P E
Sbjct: 181 HHSASSRETQNAKRLREASGGDNNDDKDHSGGGGSALANTRVVNANSNSGLEVSQHLPPE 240

Query: 241 VNSTAVFRCVRMTTLDEPTGTDQYAYQTAVNIGGHIFKGILYDHGPDQQHHHHNPPISAS 251
           VNS A+FRCVR+++++E      YAYQTAVNIGGHIFKGILYD GP+ Q +HH   ++++
Sbjct: 241 VNSPAIFRCVRVSSIEEDEDDQAYAYQTAVNIGGHIFKGILYDQGPEHQDNHHLNLLAST 300

[Close]

BLAST of CmoCh16G006990 vs. TAIR10
Match: AT5G66350.1 (AT5G66350.1 Lateral root primordium (LRP) protein-related)

HSP 1 Score: 176.8 bits (447), Expect = 1.7e-44
Identity = 129/338 (38.17%), Postives = 169/338 (50.00%), Query Frame = 1


Query: 1   MAGFFPLGGGGGGSS--------GGEIIHPTDGLLWYKNYES------------------ 60
           MAGFF LG GGGG++               T+  LW +N  S                  
Sbjct: 1   MAGFFSLGHGGGGNTPDNHRTNTNNPSSSGTESWLWCRNPNSNADGGEAGPSYKGTLELW 60

Query: 61  ---------FETEQQQQ---------GGEGFVYSGEN--SPARSSLVMVRSGGGKV-ISC 120
                    F+ +QQQQ          G G   S  +    +  +L+M+RSG G    SC
Sbjct: 61  QHPNNQEIIFQQQQQQQQRLDLYTSAAGLGVGPSNRSLIETSGGALMMMRSGSGSGGPSC 120

Query: 121 QDCGNQAKKDCVHMRCRTCCKSRGFLCETHVKSTWVPASKRRERLIRTAGGDS------- 180
           QDCGNQ+KKDC HMRCRTCCKSRG  C THVKSTWVPA+KRRER  + + G         
Sbjct: 121 QDCGNQSKKDCSHMRCRTCCKSRGLDCPTHVKSTWVPAAKRRERQQQLSTGQQPQQLGGS 180

Query: 181 --KRPRDTHAA--------------SSGFEIGNFPAEVNSTAVFRCVRMTTLDEPTGTDQ 240
             KR R+   A              +SG E+GNFP EV+S+AVFRCVR++++D+    ++
Sbjct: 181 VPKRQRERIPARSTSMAYTRIPSNNTSGLEVGNFPPEVSSSAVFRCVRVSSVDDE--EEE 240

Query: 241 YAYQTAVNIGGHIFKGILYDHGPDQQHHHHNPPISASPDGGAL---LITTAESAAPLDPP 246
           YAY+TAV+IGGH+FKG+LYD GP ++         +S  GG+    LIT   SA+   P 
Sbjct: 241 YAYKTAVSIGGHVFKGVLYDQGPAER---------SSSGGGSQPLNLITAGPSASSSSPN 300

[Close]

BLAST of CmoCh16G006990 vs. TAIR10
Match: AT1G19790.1 (AT1G19790.1 SHI-related sequence 7)

HSP 1 Score: 173.3 bits (438), Expect = 1.9e-43
Identity = 103/248 (41.53%), Postives = 135/248 (54.44%), Query Frame = 1


Query: 52  ENSPARSS---LVMVRSGGGKVISCQDCGNQAKKDCVHMRCRTCCKSRGFLCETHVKSTW 111
           ++ P RSS     + R G    ++CQDCGNQAKKDC HMRCRTCCKSRGF C+THVKSTW
Sbjct: 98  DHEPVRSSTGGFTVTRQGN---MNCQDCGNQAKKDCPHMRCRTCCKSRGFDCQTHVKSTW 157

Query: 112 VPASKRRERLIRTAGGDSKRPRDT---------------------------------HAA 171
           V A+KRRER  + A   +KR RD                                  +A+
Sbjct: 158 VSAAKRRERQAQLAVLPAKRIRDANSRGGGDDDDDDKEDEKNDSCGGGSALACTRVVNAS 217

Query: 172 SSGFEIGNFPAEVNSTAVFRCVRMTTLDEPTGTDQYAYQTAVNIGGHIFKGILYDHGPDQ 231
           SSG E  + P E++S AVFRC+R++++D+    ++YAYQTAV+IGGH+FKGILYD GP  
Sbjct: 218 SSGLETSHLPPEISSPAVFRCMRVSSIDDE--DEEYAYQTAVSIGGHVFKGILYDQGPSS 277

Query: 232 QHH-------------HHNPPISASPDGGALLITTAESA--APLDPPPSYPA---PLNSY 246
            HH             HH   + ++P        TA +     +DP   Y A   P N++
Sbjct: 278 DHHRYSSSLNGETSHQHHLNLMDSTPSAATTNAVTAVNTNNGSIDPSSLYTAVATPFNAF 337

[Close]

BLAST of CmoCh16G006990 vs. TAIR10
Match: AT4G36260.1 (AT4G36260.1 Lateral root primordium (LRP) protein-related)

HSP 1 Score: 158.7 bits (400), Expect = 4.7e-39
Identity = 119/326 (36.50%), Postives = 156/326 (47.85%), Query Frame = 1


Query: 1   MAGFFPLGGGGGGSSGGEIIHPTD---GLLWYK---NYESFETEQQQQ----GGEGFVYS 60
           MAG F LGG    +   E  +        +WY+   N  +      QQ      E  +  
Sbjct: 1   MAGIFSLGGNNNNNGDEEEENQQQQKTNWVWYRSNANTNNINPSSSQQVWQIPPEQMLMH 60

Query: 61  GENSPARSSLVM-----------VRSGGGKVISCQDCGNQAKKDCVHMRCRTCCKSRGFL 120
             + P + SL +             S     ISC+DCGNQAKKDC HMRCRTCCKSRGF 
Sbjct: 61  HHSHPQQQSLDLYPGHQIDVSDLATSSRSITISCRDCGNQAKKDCTHMRCRTCCKSRGFD 120

Query: 121 CETHVKSTWVPASKRRERL----IRTAGGDS---------------KRPRD--------- 180
           C THV+STW+P ++RRER     + T+GG                 KR RD         
Sbjct: 121 CSTHVRSTWIPVARRRERQQQLHMSTSGGGGGSGSGGAGGGGSSIPKRHRDPTLPGTSSS 180

Query: 181 --THAASSGFEIG--NFPAEVNSTAVFRCVRMTTLDEPTGTDQYAYQTAVNIGGHIFKGI 240
               + S+G E+G  +FP EV+S A+FRCV+M+ +D+  G  QYAYQT VNIGGH+FKGI
Sbjct: 181 SRLPSHSAGLEMGEASFPGEVSSDALFRCVKMSGVDD-GGDGQYAYQTTVNIGGHLFKGI 240

Query: 241 LYDHGPDQQH---------------------HHHNPPISASPDGGALLITTAESAAPLDP 249
           LYD GP+  +                     H  NPP+     GG        SA  +DP
Sbjct: 241 LYDQGPESSYMSGGSGGSDHQSSSAGGGGGGHPFNPPVVTDGGGG------VSSAMFVDP 300

[Close]

BLAST of CmoCh16G006990 vs. NCBI nr
Match: gi|449457620|ref|XP_004146546.1| (PREDICTED: protein SHI RELATED SEQUENCE 1-like [Cucumis sativus])

HSP 1 Score: 326.2 bits (835), Expect = 4.8e-86
Identity = 184/281 (65.48%), Postives = 202/281 (71.89%), Query Frame = 1


Query: 1   MAGFFPLGGGGGG-----------SSGGEIIHPT-DGLLWYKNYESFET----EQQQQ-- 60
           MAGFFPL GGG G           ++GGEIIHPT +GL WYKNYE  ET    EQQQQ  
Sbjct: 1   MAGFFPLDGGGSGGRVPNYHFPTPTTGGEIIHPTTEGLFWYKNYERLETWEGEEQQQQQQ 60

Query: 61  -----GGEGFVYSGENSPARSSLVMVRSG------GGKVISCQDCGNQAKKDCVHMRCRT 120
                GGEGFVYSG+ SPARSSLVMVRSG      GG V SCQDCGNQAKKDCVHMRCRT
Sbjct: 61  PAQEQGGEGFVYSGDESPARSSLVMVRSGRGGGGGGGPVTSCQDCGNQAKKDCVHMRCRT 120

Query: 121 CCKSRGFLCETHVKSTWVPASKRRERLIRTAGGDSKRPRDT--HAASSGFEIGNFPAEVN 180
           CCKSRGF CETHVKSTWVPASKRR+R +R+ G +SKRP+DT  H  SSG ++GNFP EV 
Sbjct: 121 CCKSRGFECETHVKSTWVPASKRRDRHLRSDGLNSKRPKDTHYHPTSSGLDMGNFPTEVT 180

Query: 181 STAVFRCVRMTTLDEPTGTDQYAYQTAVNIGGHIFKGILYDHGPDQQHHHHNPPISASPD 240
           + AVFRCVRMT+LDE    DQYAYQTAVNIGG IFKGILYDHGP+Q      PP S+S  
Sbjct: 181 TPAVFRCVRMTSLDET--DDQYAYQTAVNIGGRIFKGILYDHGPEQP----PPPPSSS-- 240

Query: 241 GGALLITTAESAAPLDPPPSYPAPLNSYIPAGTQFFQPPTS 251
                     SAA LDP P YP PL++YI AGTQFF PP+S
Sbjct: 241 ----------SAALLDPTPPYPTPLSTYITAGTQFFLPPSS 263

[Close]

BLAST of CmoCh16G006990 vs. NCBI nr
Match: gi|659131063|ref|XP_008465489.1| (PREDICTED: protein SHI RELATED SEQUENCE 1-like [Cucumis melo])

HSP 1 Score: 323.9 bits (829), Expect = 2.4e-85
Identity = 180/282 (63.83%), Postives = 200/282 (70.92%), Query Frame = 1


Query: 1   MAGFFPLGGGGGG-----------SSGGEIIHPT-DGLLWYKNYESFETEQ--------- 60
           MAGFFPL GGG G           ++GGEIIHPT +GL WYKNYE  ET +         
Sbjct: 1   MAGFFPLDGGGSGGRVPNYHFPTPTTGGEIIHPTTEGLFWYKNYERLETWEGEEEHQQQQ 60

Query: 61  ---QQQGGEGFVYSGENSPARSSLVMVRSG------GGKVISCQDCGNQAKKDCVHMRCR 120
              Q+QGGEGFVYSG+ SPARSSLVMVRSG      GG V SCQDCGNQAKKDC HMRCR
Sbjct: 61  QPAQEQGGEGFVYSGDESPARSSLVMVRSGRGGGSGGGPVTSCQDCGNQAKKDCAHMRCR 120

Query: 121 TCCKSRGFLCETHVKSTWVPASKRRERLIRTAGGDSKRPRDT--HAASSGFEIGNFPAEV 180
           TCCKSRGF CETHVKSTWVPASKRR+RL+R+ G +SKRP+DT  H  SSG ++ NFP EV
Sbjct: 121 TCCKSRGFECETHVKSTWVPASKRRDRLLRSDGLNSKRPKDTHYHPTSSGLDMANFPMEV 180

Query: 181 NSTAVFRCVRMTTLDEPTGTDQYAYQTAVNIGGHIFKGILYDHGPDQQHHHHNPPISASP 240
            + AVFRCVRMTTLDE    DQYAYQTAVNIGGHIFKGILYDHGP+Q      PP S+S 
Sbjct: 181 TTPAVFRCVRMTTLDET--DDQYAYQTAVNIGGHIFKGILYDHGPEQP----PPPPSSS- 240

Query: 241 DGGALLITTAESAAPLDPPPSYPAPLNSYIPAGTQFFQPPTS 251
                      +AA LD  P YP PL++YI AGTQFF PP+S
Sbjct: 241 ----------SAAALLDSTPPYPTPLSTYITAGTQFFLPPSS 265

[Close]

BLAST of CmoCh16G006990 vs. NCBI nr
Match: gi|720049664|ref|XP_010271515.1| (PREDICTED: protein SHI RELATED SEQUENCE 1-like [Nelumbo nucifera])

HSP 1 Score: 226.5 bits (576), Expect = 5.2e-56
Identity = 155/319 (48.59%), Postives = 186/319 (58.31%), Query Frame = 1


Query: 1   MAGFFPLGGGGGGSSGGEIIH---PTDGLLWYKNYE-----SFETEQQ---QQGGEGFVY 60
           MAGF  LGGGGGG  G +  H   P + L  Y+N E      FE  QQ   Q+ G+  +Y
Sbjct: 1   MAGF-SLGGGGGGG-GNQQQHNEIPPESLFLYRNEEISYNKGFELWQQHLHQRHGQQDIY 60

Query: 61  SG-------------ENSPARSSLVMVRSGG--GKVISCQDCGNQAKKDCVHMRCRTCCK 120
           S              + SP+R++LVM+R GG  G  +SCQDCGNQAKKDCVHMRCRTCCK
Sbjct: 61  SSALGVGPSRSANISDESPSRAALVMMRQGGSGGGGMSCQDCGNQAKKDCVHMRCRTCCK 120

Query: 121 SRGFLCETHVKSTWVPASKRRERLIRTA----------GGDSKRPRDTHAASS------- 180
           SRGF C+THVKSTWVPAS+RRER  + A          G + KR R+  +ASS       
Sbjct: 121 SRGFQCQTHVKSTWVPASRRRERQQQLAAVEQQQQQLRGENPKRQRENPSASSLACTRLP 180

Query: 181 ----GFEIGNFPAEVNSTAVFRCVRMTTLDEPTGTDQYAYQTAVNIGGHIFKGILYDHGP 240
               G E+GNFPAEVNS AVFRCVR++ +DE     QYAYQTAVNI GH+FKGILYD GP
Sbjct: 181 TTTSGLEVGNFPAEVNSPAVFRCVRVSAMDEADA--QYAYQTAVNIRGHVFKGILYDQGP 240

Query: 241 DQQHHHHNPPISASPDGG----------ALLITT------------AESAAPLDPPPSYP 251
           +    H+ P  S+S  GG          A   TT            + +AA LDP   YP
Sbjct: 241 EG---HYVPGESSSGGGGIPLNLITAGTAATTTTTTTNVSTSTAAASAAAALLDPSSLYP 300

[Close]

BLAST of CmoCh16G006990 vs. NCBI nr
Match: gi|449464562|ref|XP_004149998.1| (PREDICTED: protein SHI RELATED SEQUENCE 1 [Cucumis sativus])

HSP 1 Score: 222.2 bits (565), Expect = 9.8e-55
Identity = 156/337 (46.29%), Postives = 188/337 (55.79%), Query Frame = 1


Query: 1   MAGFFPLGGGGGG-------SSGGEIIHPT--DGLLWYK--NYESFETEQQQQGGEGF-- 60
           M+GFF LGGGGGG       +   + IHP     L WYK  N E ++ +QQQQ       
Sbjct: 1   MSGFFTLGGGGGGRDEEQNNNRPNQFIHPPPDSSLFWYKAGNVELWQQQQQQQHHHHHQE 60

Query: 61  ----------------------VYSGENSPARS-SLVMVRSG-GGKVISCQDCGNQAKKD 120
                                 V + + S +RS + +M+ SG GG  ISCQDCGNQAKKD
Sbjct: 61  QPLFQTQSRTTTTTTPYSAPLAVRNSDESSSRSGNFMMISSGSGGGGISCQDCGNQAKKD 120

Query: 121 CVHMRCRTCCKSRGFLCETHVKSTWVPASKRRERLIRTA-----------------GGDS 180
           C HMRCRTCCKSRGF CETHVKSTWVPA+KRRER  + A                 GGD+
Sbjct: 121 CSHMRCRTCCKSRGFHCETHVKSTWVPAAKRRERQDKLAALQTHHHHHHQQQLQLHGGDN 180

Query: 181 --KRPRDTHAAS------------SGFEIGNFPAEVNSTAVFRCVRMTTLDEPTGTDQYA 240
             KR RD +++S            SG EIGNFPAE+NS AVFRCVR+++ D+    DQYA
Sbjct: 181 NPKRHRDYNSSSLACTLIPTNNNTSGLEIGNFPAELNSPAVFRCVRVSSADDT--DDQYA 240

Query: 241 YQTAVNIGGHIFKGILYDHGPDQQHHHHNPPISASPDG--------------GALLITT- 251
           YQTAVNIGGH+FKGILYD GP+   +++ PP   S  G              GA   TT 
Sbjct: 241 YQTAVNIGGHVFKGILYDQGPE---NNYIPPGETSSGGGGSSSGVQPLNFIAGAADATTG 300

[Close]

BLAST of CmoCh16G006990 vs. NCBI nr
Match: gi|659080422|ref|XP_008440782.1| (PREDICTED: protein SHI RELATED SEQUENCE 1 [Cucumis melo])

HSP 1 Score: 219.5 bits (558), Expect = 6.4e-54
Identity = 154/334 (46.11%), Postives = 186/334 (55.69%), Query Frame = 1


Query: 1   MAGFFPLGGGGGG-------SSGGEIIHPT--DGLLWYK--NYESFETEQQQQ------- 60
           M+GFF LGGGGGG       +   + IHP     L WYK  N E ++ +QQ         
Sbjct: 1   MSGFFTLGGGGGGREEEQNNNRPNQFIHPPPDSSLFWYKAGNVELWQQQQQHHHHHQEQP 60

Query: 61  ---------------GGEGFVYSGENSPARS-SLVMVRSG-GGKVISCQDCGNQAKKDCV 120
                               V + + S +RS + +M+ SG GG  ISCQDCGNQAKKDC 
Sbjct: 61  LFQTQSRTTTTTTPYSAPLTVRNSDESSSRSGNFMMISSGSGGGGISCQDCGNQAKKDCS 120

Query: 121 HMRCRTCCKSRGFLCETHVKSTWVPASKRRERLIRTA----------------GGDS--K 180
           HMRCRTCCKSRGF CETHVKSTWVPA+KRRER  + A                GGD+  K
Sbjct: 121 HMRCRTCCKSRGFHCETHVKSTWVPAAKRRERQDKLAALQTHHHHQQQQLQLHGGDNNPK 180

Query: 181 RPRDTHAAS------------SGFEIGNFPAEVNSTAVFRCVRMTTLDEPTGTDQYAYQT 240
           R RD +++S            SG EIGNFPAE+NS AVFRCVR+++ D+    DQYAYQT
Sbjct: 181 RHRDYNSSSLACTLIPTNNNTSGLEIGNFPAELNSPAVFRCVRVSSADDT--DDQYAYQT 240

Query: 241 AVNIGGHIFKGILYDHGPDQQHHHHNPPISASPDG--------------GALLITT---- 251
           AVNIGGH+FKGILYD GP+   +++ PP   S  G              GA   TT    
Sbjct: 241 AVNIGGHVFKGILYDQGPE---NNYIPPGETSSGGGGSSSGVQPLNFITGAADTTTGSGG 300

The following BLAST results are available for this feature:

BLAST of CmoCh16G006990 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SRS1_ARATH	1.3e-46	44.70	Protein SHI RELATED SEQUENCE 1 OS=Arabidopsis thaliana GN=SRS1 PE=1 SV=2	[more]
SRS5_ARATH	1.4e-45	38.29	Protein SHI RELATED SEQUENCE 5 OS=Arabidopsis thaliana GN=SRS5 PE=2 SV=1	[more]
SHI_ARATH	3.0e-43	38.17	Protein SHORT INTERNODES OS=Arabidopsis thaliana GN=SHI PE=1 SV=1	[more]
SRS7_ARATH	3.3e-42	41.53	Protein SHI RELATED SEQUENCE 7 OS=Arabidopsis thaliana GN=SRS7 PE=2 SV=1	[more]
SRS2_ARATH	8.4e-38	36.50	Protein SHI RELATED SEQUENCE 2 OS=Arabidopsis thaliana GN=SRS2 PE=2 SV=1	[more]

BLAST of CmoCh16G006990 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KUG2_CUCSA	3.4e-86	65.48	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G043960 PE=4 SV=1	[more]
A0A0A0KGL4_CUCSA	6.9e-55	46.29	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G504650 PE=4 SV=1	[more]
B9T5Y4_RICCO	1.1e-52	43.06	Transcription factor, putative OS=Ricinus communis GN=RCOM_0415480 PE=4 SV=1	[more]
U5L3K7_SOLLC	2.7e-51	50.60	Expression of terpenoids 3 (Fragment) OS=Solanum lycopersicum PE=2 SV=1	[more]
K4BAY3_SOLLC	3.5e-51	42.09	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]

BLAST of CmoCh16G006990 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G51060.1	7.3e-48	44.70	Lateral root primordium (LRP) protein-related	[more]
AT1G75520.1	8.0e-47	38.29	SHI-related sequence 5	[more]
AT5G66350.1	1.7e-44	38.17	Lateral root primordium (LRP) protein-related	[more]
AT1G19790.1	1.9e-43	41.53	SHI-related sequence 7	[more]
AT4G36260.1	4.7e-39	36.50	Lateral root primordium (LRP) protein-related	[more]

BLAST of CmoCh16G006990 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449457620\|ref\|XP_004146546.1\|	4.8e-86	65.48	PREDICTED: protein SHI RELATED SEQUENCE 1-like [Cucumis sativus]	[more]
gi\|659131063\|ref\|XP_008465489.1\|	2.4e-85	63.83	PREDICTED: protein SHI RELATED SEQUENCE 1-like [Cucumis melo]	[more]
gi\|720049664\|ref\|XP_010271515.1\|	5.2e-56	48.59	PREDICTED: protein SHI RELATED SEQUENCE 1-like [Nelumbo nucifera]	[more]
gi\|449464562\|ref\|XP_004149998.1\|	9.8e-55	46.29	PREDICTED: protein SHI RELATED SEQUENCE 1 [Cucumis sativus]	[more]
gi\|659080422\|ref\|XP_008440782.1\|	6.4e-54	46.11	PREDICTED: protein SHI RELATED SEQUENCE 1 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR006510	Znf_LRP1
IPR006511	SHI_C
IPR007818	SHI

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh16G006990.1	CmoCh16G006990.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006510	Zinc finger, lateral root primordium type 1	TIGRFAMs	TIGR01623	TIGR01623	coord: 72..114 score: 2.7
IPR006511	Lateral Root Primordium type 1, C-terminal	TIGRFAMs	TIGR01624	TIGR01624	coord: 144..193 score: 3.5
IPR007818	Protein of unknown function DUF702	PFAM	PF05142	DUF702	coord: 71..194 score: 6.5
None	No IPR available	PANTHER	PTHR31604	FAMILY NOT NAMED	coord: 44..250 score: 4.0E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh16G006990	Cucsa.201140	Cucumber (Gy14) v1	cgycmoB0595
CmoCh16G006990	CmaCh16G006400	Cucurbita maxima (Rimu)	cmacmoB322
CmoCh16G006990	CmaCh04G007690	Cucurbita maxima (Rimu)	cmacmoB700
CmoCh16G006990	Cla014559	Watermelon (97103) v1	cmowmB301
CmoCh16G006990	Csa6G504650	Cucumber (Chinese Long) v2	cmocuB334
CmoCh16G006990	Csa4G043960	Cucumber (Chinese Long) v2	cmocuB325
CmoCh16G006990	MELO3C007877	Melon (DHL92) v3.5.1	cmomeB303
CmoCh16G006990	ClCG07G008820	Watermelon (Charleston Gray)	cmowcgB294
CmoCh16G006990	CSPI06G31480	Wild cucumber (PI 183967)	cmocpiB342
CmoCh16G006990	CSPI04G05220	Wild cucumber (PI 183967)	cmocpiB332
CmoCh16G006990	Lsi07G002300	Bottle gourd (USVL1VR-Ls)	cmolsiB315
CmoCh16G006990	Lsi01G006310	Bottle gourd (USVL1VR-Ls)	cmolsiB292
CmoCh16G006990	Cp4.1LG14g01720	Cucurbita pepo (Zucchini)	cmocpeB307
CmoCh16G006990	Cp4.1LG01g06910	Cucurbita pepo (Zucchini)	cmocpeB316
CmoCh16G006990	MELO3C007877.2	Melon (DHL92) v3.6.1	cmomedB347
CmoCh16G006990	CsaV3_4G005360	Cucumber (Chinese Long) v3	cmocucB0388
CmoCh16G006990	CsaV3_6G046800	Cucumber (Chinese Long) v3	cmocucB0405
CmoCh16G006990	Cla97C07G135860	Watermelon (97103) v2	cmowmbB336
CmoCh16G006990	Cla97C01G019470	Watermelon (97103) v2	cmowmbB309
CmoCh16G006990	Bhi03G000673	Wax gourd	cmowgoB0445
CmoCh16G006990	Bhi01G001886	Wax gourd	cmowgoB0428
CmoCh16G006990	CsGy4G005130	Cucumber (Gy14) v2	cgybcmoB467
CmoCh16G006990	CsGy6G031000	Cucumber (Gy14) v2	cgybcmoB730
CmoCh16G006990	Carg14168	Silver-seed gourd	carcmoB1258
CmoCh16G006990	Carg05760	Silver-seed gourd	carcmoB1366

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh16G006990	CmoCh03G007340	Cucurbita moschata (Rifu)	cmocmoB284

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh16G006990	Cucurbita moschata (Rifu)	cmocmoB285
CmoCh16G006990	Melon (DHL92) v3.5.1	cmomeB294
CmoCh16G006990	Watermelon (Charleston Gray)	cmowcgB288
CmoCh16G006990	Watermelon (97103) v1	cmowmB317
CmoCh16G006990	Cucurbita pepo (Zucchini)	cmocpeB312
CmoCh16G006990	Melon (DHL92) v3.6.1	cmomedB336
CmoCh16G006990	Silver-seed gourd	carcmoB0546