Carg14168 (gene) Silver-seed gourd

Overview
NameCarg14168
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptionprotein SHI RELATED SEQUENCE 1-like
LocationCucurbita_argyrosperma_scaffold_045 : 357754 .. 358774 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGGTTTTTACCCACTAGGCGGCGGAAGAGAACCCAATTATCACCTTCCCACTACCACCACCACCACCACGGACGGATTATTTTGGTACAGAAATTATGAGAGCCTTGAAATATGGCAGCAACAGCAGGTGCAGCAGCAAGCGGGAGAAGGGTTTGTTTACTCGGGCGATGAATCGCCTCCAAGATCGTCGTTGGTGATGCTGAGATCCGGCAGAAACGGGGGAGGGCAAGTAATAAGCTGCCAAGACTGTGGAAATCAAGCCAAAAAGGATTGCCTTCACATGCGATGTAGAACTTGCTGTAAAAGTCGTGGCTTTGACTGTGAAACCCACGTCAAAAGTACTTGGGTTCCGGCCTCCAAACGCCGTGAGCGACACCTCCGCAGCGACGGCACTAATCTCAAACGACCTCGAGACAACACCGCCGCTTCCTCAGGTACAATCAAATTAATTCTTGCTGTTTTCAATTTTTTTTTATATATATTTTATTTTATTTTTAGATTTCTTGTGAGGGAGGGCTTTGTTTTGGAAGTTTTTCCAAATTCCAGCAAGACCCACATCGATTTTGGTCATGATTGACAGAATCAATCTCTCCCTTTCTCTAAAATGGTCTCTTTTTTTTCTTTTTTCTCTTTTTAAAATTTTGGTTTTAGGGTTAGAAATGGGGAATTTTCCGGTGGAAGTGAGCTCAACGGCGGTGTTTCGGTGCGTGCGAATGACAACGTTGGACGAAACCAACGACCAATTTGCTTACCAAACAGCCGTCAACATCGGAGGCCATACCTTCAAGGGCATTCTTTACGACCACGGCCCTGAACAACAACAACAACCACCACCACCACCACCACCCAACTCCGCCTCCCCCGACGGTGGCACCCTCCTCATCACCGCCCCCTCCACCACCATGGAATTGCCACCCATCAGCGCCGCATTGCTCGATCCTCCTCCGCCGTACCCAGCTCCTCTGAACACCTACGTCGCCGCCGGTACGCAATTTTTTCTTCCCCCAACGTCTTAA

mRNA sequence

ATGGCCGGTTTTTACCCACTAGGCGGCGGAAGAGAACCCAATTATCACCTTCCCACTACCACCACCACCACCACGGACGGATTATTTTGGTACAGAAATTATGAGAGCCTTGAAATATGGCAGCAACAGCAGGTGCAGCAGCAAGCGGGAGAAGGGTTTGTTTACTCGGGCGATGAATCGCCTCCAAGATCGTCGTTGGTGATGCTGAGATCCGGCAGAAACGGGGGAGGGCAAGTAATAAGCTGCCAAGACTGTGGAAATCAAGCCAAAAAGGATTGCCTTCACATGCGATGTAGAACTTGCTGTAAAAGTCGTGGCTTTGACTGTGAAACCCACGTCAAAAGTACTTGGGTTCCGGCCTCCAAACGCCGTGAGCGACACCTCCGCAGCGACGGCACTAATCTCAAACGACCTCGAGACAACACCGCCGCTTCCTCAGGGTTAGAAATGGGGAATTTTCCGGTGGAAGTGAGCTCAACGGCGGTGTTTCGGTGCGTGCGAATGACAACGTTGGACGAAACCAACGACCAATTTGCTTACCAAACAGCCGTCAACATCGGAGGCCATACCTTCAAGGGCATTCTTTACGACCACGGCCCTGAACAACAACAACAACCACCACCACCACCACCACCCAACTCCGCCTCCCCCGACGGTGGCACCCTCCTCATCACCGCCCCCTCCACCACCATGGAATTGCCACCCATCAGCGCCGCATTGCTCGATCCTCCTCCGCCGTACCCAGCTCCTCTGAACACCTACGTCGCCGCCGGTACGCAATTTTTTCTTCCCCCAACGTCTTAA

Coding sequence (CDS)

ATGGCCGGTTTTTACCCACTAGGCGGCGGAAGAGAACCCAATTATCACCTTCCCACTACCACCACCACCACCACGGACGGATTATTTTGGTACAGAAATTATGAGAGCCTTGAAATATGGCAGCAACAGCAGGTGCAGCAGCAAGCGGGAGAAGGGTTTGTTTACTCGGGCGATGAATCGCCTCCAAGATCGTCGTTGGTGATGCTGAGATCCGGCAGAAACGGGGGAGGGCAAGTAATAAGCTGCCAAGACTGTGGAAATCAAGCCAAAAAGGATTGCCTTCACATGCGATGTAGAACTTGCTGTAAAAGTCGTGGCTTTGACTGTGAAACCCACGTCAAAAGTACTTGGGTTCCGGCCTCCAAACGCCGTGAGCGACACCTCCGCAGCGACGGCACTAATCTCAAACGACCTCGAGACAACACCGCCGCTTCCTCAGGGTTAGAAATGGGGAATTTTCCGGTGGAAGTGAGCTCAACGGCGGTGTTTCGGTGCGTGCGAATGACAACGTTGGACGAAACCAACGACCAATTTGCTTACCAAACAGCCGTCAACATCGGAGGCCATACCTTCAAGGGCATTCTTTACGACCACGGCCCTGAACAACAACAACAACCACCACCACCACCACCACCCAACTCCGCCTCCCCCGACGGTGGCACCCTCCTCATCACCGCCCCCTCCACCACCATGGAATTGCCACCCATCAGCGCCGCATTGCTCGATCCTCCTCCGCCGTACCCAGCTCCTCTGAACACCTACGTCGCCGCCGGTACGCAATTTTTTCTTCCCCCAACGTCTTAA

Protein sequence

MAGFYPLGGGREPNYHLPTTTTTTTDGLFWYRNYESLEIWQQQQVQQQAGEGFVYSGDESPPRSSLVMLRSGRNGGGQVISCQDCGNQAKKDCLHMRCRTCCKSRGFDCETHVKSTWVPASKRRERHLRSDGTNLKRPRDNTAASSGLEMGNFPVEVSSTAVFRCVRMTTLDETNDQFAYQTAVNIGGHTFKGILYDHGPEQQQQPPPPPPPNSASPDGGTLLITAPSTTMELPPISAALLDPPPPYPAPLNTYVAAGTQFFLPPTS
Homology
[Close]
BLAST of Carg14168 vs. NCBI nr
Match: XP_023552309.1 (protein SHI RELATED SEQUENCE 1-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 427.9 bits (1099), Expect = 2.5e-116
Identity = 259/268 (96.64%), Postives = 259/268 (96.64%), Query Frame = 0 

Query: 1   MAGFYPLGGGREPNYHLP-TXXXXXXDGLFWYRNYESLEIWQQQQVQQQAGEGFVYSGDE 60
           MAGFYPLGGGREPNYHLP T      DGLFWYRNYESL IWQQQQVQQQAGEGFVYSGDE
Sbjct: 1   MAGFYPLGGGREPNYHLPTTTTTTITDGLFWYRNYESLGIWQQQQVQQQAGEGFVYSGDE 60

Query: 61  SPPRSSLVMLRSGRNGGGQVISCQDCGNQAKKDCLHMRCRTCCKSRGFDCETHVKSTWVP 120
           SPPRSSLVMLRSGRNGGGQVISCQDCGNQAKKDCLHMRCRTCCKSRGFDCETHVKSTWVP
Sbjct: 61  SPPRSSLVMLRSGRNGGGQVISCQDCGNQAKKDCLHMRCRTCCKSRGFDCETHVKSTWVP 120

Query: 121 ASKRRERHLRSDGTNLKRPRDNTAASSGLEMGNFPVEVSSTAVFRCVRMTTLDETNDQFA 180
           ASKRRERHLRSDGTNLKRPRDNTAASSGLEMGN PVEVSSTAVFRCVRMTTLDETNDQFA
Sbjct: 121 ASKRRERHLRSDGTNLKRPRDNTAASSGLEMGNLPVEVSSTAVFRCVRMTTLDETNDQFA 180

Query: 181 YQTAVNIGGHTFKGILYDHGPEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
           YQTAVNIGGHTFKGILYDHGPEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 181 YQTAVNIGGHTFKGILYDHGPEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 XXXXXXXYPAPLNTYVAAGTQFFLPPTS 268
           XXXXXXXYPAPLNTYVAAGTQFFLPPTS
Sbjct: 241 XXXXXXXYPAPLNTYVAAGTQFFLPPTS 268

[Close]
BLAST of Carg14168 vs. NCBI nr
Match: XP_022942307.1 (protein SHORT INTERNODES-like [Cucurbita moschata] >XP_022942308.1 protein SHORT INTERNODES-like [Cucurbita moschata])

HSP 1 Score: 426.0 bits (1094), Expect = 9.3e-116
Identity = 263/267 (98.50%), Postives = 264/267 (98.88%), Query Frame = 0 

Query: 1   MAGFYPLGGGREPNYHLPTXXXXXXDGLFWYRNYESLEIWQQQQVQQQAGEGFVYSGDES 60
           MAGF+PLGGGREPNYHLPTXXXXXXDGLFWYRNYESL IWQQQQVQQQAGEGFVYSGDES
Sbjct: 1   MAGFFPLGGGREPNYHLPTXXXXXXDGLFWYRNYESLGIWQQQQVQQQAGEGFVYSGDES 60

Query: 61  PPRSSLVMLRSGRNGGGQVISCQDCGNQAKKDCLHMRCRTCCKSRGFDCETHVKSTWVPA 120
           PPRSSLVMLRSGRNGGGQVISCQDCGNQAKKDCLHMRCRTCCKSRGFDCETHVKSTWVPA
Sbjct: 61  PPRSSLVMLRSGRNGGGQVISCQDCGNQAKKDCLHMRCRTCCKSRGFDCETHVKSTWVPA 120

Query: 121 SKRRERHLRSDGTNLKRPRDNTAASSGLEMGNFPVEVSSTAVFRCVRMTTLDETNDQFAY 180
           SKRRERHLRSDGTNLKRPRDNTAASSGLEM NFPVEVSSTAVFRCVRMTTLDETNDQFAY
Sbjct: 121 SKRRERHLRSDGTNLKRPRDNTAASSGLEMRNFPVEVSSTAVFRCVRMTTLDETNDQFAY 180

Query: 181 QTAVNIGGHTFKGILYDHGPEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
           QTAVNIGGHTFKGILYDHGPE XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 181 QTAVNIGGHTFKGILYDHGPE-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 XXXXXXYPAPLNTYVAAGTQFFLPPTS 268
           XXXXXXYPAPLNTYVAAGTQFFLPPTS
Sbjct: 241 XXXXXXYPAPLNTYVAAGTQFFLPPTS 266

[Close]
BLAST of Carg14168 vs. NCBI nr
Match: XP_022982329.1 (protein SHI RELATED SEQUENCE 1-like [Cucurbita maxima] >XP_022982338.1 protein SHI RELATED SEQUENCE 1-like [Cucurbita maxima])

HSP 1 Score: 421.4 bits (1082), Expect = 2.3e-114
Identity = 255/267 (95.51%), Postives = 257/267 (96.25%), Query Frame = 0 

Query: 1   MAGFYPLGGGREPNYHLPTXXXXXXDGLFWYRNYESLEIWQQQQVQQQAGEGFVYSGDES 60
           MAGF+PLGGGREPNYHLPT      DGLFWYRNYESL IWQQQQVQQQAGEGFVYSGDES
Sbjct: 1   MAGFFPLGGGREPNYHLPT--TTTTDGLFWYRNYESLGIWQQQQVQQQAGEGFVYSGDES 60

Query: 61  PPRSSLVMLRSGRNGGGQVISCQDCGNQAKKDCLHMRCRTCCKSRGFDCETHVKSTWVPA 120
           PPRSSLVMLRSGRNGGGQVISCQDCGNQAKKDCLHMRCRTCCKSRGFDCETHVKSTWVPA
Sbjct: 61  PPRSSLVMLRSGRNGGGQVISCQDCGNQAKKDCLHMRCRTCCKSRGFDCETHVKSTWVPA 120

Query: 121 SKRRERHLRSDGTNLKRPRDNTAASSGLEMGNFPVEVSSTAVFRCVRMTTLDETNDQFAY 180
           SKRRERHLRSD TNLKRPRDNTAASSGLEMGNFP+EVSSTAVFRCVRMTTLDETNDQFAY
Sbjct: 121 SKRRERHLRSDATNLKRPRDNTAASSGLEMGNFPMEVSSTAVFRCVRMTTLDETNDQFAY 180

Query: 181 QTAVNIGGHTFKGILYDHGPEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
           QTAVNIGGHTFKGILYDHGPE  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 181 QTAVNIGGHTFKGILYDHGPE--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 XXXXXXYPAPLNTYVAAGTQFFLPPTS 268
           XXXXXXYPAPLNTYVAAGTQFFLPPTS
Sbjct: 241 XXXXXXYPAPLNTYVAAGTQFFLPPTS 263

[Close]
BLAST of Carg14168 vs. NCBI nr
Match: XP_023552316.1 (protein SHI RELATED SEQUENCE 1-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 419.1 bits (1076), Expect = 1.1e-113
Identity = 257/268 (95.90%), Postives = 257/268 (95.90%), Query Frame = 0 

Query: 1   MAGFYPLGGGREPNYHLP-TXXXXXXDGLFWYRNYESLEIWQQQQVQQQAGEGFVYSGDE 60
           MAGFYPLGGGREPNYHLP T      DGLFWYRNYESL IWQQQQVQQQAGEGFVYSGDE
Sbjct: 1   MAGFYPLGGGREPNYHLPTTTTTTITDGLFWYRNYESLGIWQQQQVQQQAGEGFVYSGDE 60

Query: 61  SPPRSSLVMLRSGRNGGGQVISCQDCGNQAKKDCLHMRCRTCCKSRGFDCETHVKSTWVP 120
           SPPRSSLVMLRSGRNGGGQVISCQDCGNQAKKDCLHMRCRTCCKSRGFDCETHVKSTWVP
Sbjct: 61  SPPRSSLVMLRSGRNGGGQVISCQDCGNQAKKDCLHMRCRTCCKSRGFDCETHVKSTWVP 120

Query: 121 ASKRRERHLRSDGTNLKRPRDNTAASSGLEMGNFPVEVSSTAVFRCVRMTTLDETNDQFA 180
           ASKRRERHLRSDGTNLKRPRDNTAASS  EMGN PVEVSSTAVFRCVRMTTLDETNDQFA
Sbjct: 121 ASKRRERHLRSDGTNLKRPRDNTAASS--EMGNLPVEVSSTAVFRCVRMTTLDETNDQFA 180

Query: 181 YQTAVNIGGHTFKGILYDHGPEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
           YQTAVNIGGHTFKGILYDHGPEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 181 YQTAVNIGGHTFKGILYDHGPEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 XXXXXXXYPAPLNTYVAAGTQFFLPPTS 268
           XXXXXXXYPAPLNTYVAAGTQFFLPPTS
Sbjct: 241 XXXXXXXYPAPLNTYVAAGTQFFLPPTS 266

[Close]
BLAST of Carg14168 vs. NCBI nr
Match: XP_008465489.1 (PREDICTED: protein SHI RELATED SEQUENCE 1-like [Cucumis melo])

HSP 1 Score: 312.4 bits (799), Expect = 1.5e-81
Identity = 188/290 (64.83%), Postives = 206/290 (71.03%), Query Frame = 0 

Query: 1   MAGFYPL----GGGREPNYHLPT------XXXXXXDGLFWYRNYESLEIWQQQ------- 60
           MAGF+PL     GGR PNYH PT            +GLFWY+NYE LE W+ +       
Sbjct: 1   MAGFFPLDGGGSGGRVPNYHFPTPTTGGEIIHPTTEGLFWYKNYERLETWEGEXXXXXXX 60

Query: 61  -QVQQQAGEGFVYSGDESPPRSSLVMLRSGRNG---GGQVISCQDCGNQAKKDCLHMRCR 120
                   EGFVYSGDESP RSSLVM+RSGR G   GG V SCQDCGNQAKKDC HMRCR
Sbjct: 61  XXXXXXXXEGFVYSGDESPARSSLVMVRSGRGGXXXGGPVTSCQDCGNQAKKDCAHMRCR 120

Query: 121 TCCKSRGFDCETHVKSTWVPASKRRERHLRSDGTNLKRPRDN--TAASSGLEMGNFPVEV 180
           TCCKSRGF+CETHVKSTWVPASKRR+R LRSDG N KRP+D      SSGL+M NFP+EV
Sbjct: 121 TCCKSRGFECETHVKSTWVPASKRRDRLLRSDGLNSKRPKDTHYHPTSSGLDMANFPMEV 180

Query: 181 SSTAVFRCVRMTTLDETNDQFAYQTAVNIGGHTFKGILYDHGPEXXXXXXXXXXXXXXXX 240
           ++ AVFRCVRMTTLDET+DQ+AYQTAVNIGGH FKGILYDHGPE                
Sbjct: 181 TTPAVFRCVRMTTLDETDDQYAYQTAVNIGGHIFKGILYDHGPE---------------- 240

Query: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXYPAPLNTYVAAGTQFFLPPTS 268
                    XXXXXXXXXXXXXXXXXXXXYP PL+TY+ AGTQFFLPP+S
Sbjct: 241 ---------XXXXXXXXXXXXXXXXXXXXYPTPLSTYITAGTQFFLPPSS 265

[Close]
BLAST of Carg14168 vs. TAIR10
Match: AT5G66350.1 (Lateral root primordium (LRP) protein-related)

HSP 1 Score: 175.3 bits (443), Expect = 5.2e-44
Identity = 113/263 (42.97%), Postives = 138/263 (52.47%), Query Frame = 0 

Query: 1   MAGFYPL---GGGREPNYHLPTXXXXXXDGL---FWYRNYES--------------LEIW 60
           MAGF+ L   GGG  P+ H          G     W RN  S              LE+W
Sbjct: 1   MAGFFSLGHGGGGNTPDNHRTNTNNPSSSGTESWLWCRNPNSNADGGEAGPSYKGTLELW 60

Query: 61  QQQQVQ------------------QQAGEGFVYSGDESPPRS--SLVMLRSGRNGGGQVI 120
           Q    Q                    AG G   S       S  +L+M+RSG   GG   
Sbjct: 61  QHPNNQXXXXXXXXXXXXXLDLYTSAAGLGVGPSNRSLIETSGGALMMMRSGSGSGGP-- 120

Query: 121 SCQDCGNQAKKDCLHMRCRTCCKSRGFDCETHVKSTWVPASKRRERHLRSD--------- 180
           SCQDCGNQ+KK   HMRCRTCCKSRG DC THVKSTWVPA+KRRER  +           
Sbjct: 121 SCQDCGNQSKKXXSHMRCRTCCKSRGLDCPTHVKSTWVPAAKRRERQQQLSTGQQPQQLG 180

Query: 181 GTNLKRPRDNTAA--------------SSGLEMGNFPVEVSSTAVFRCVRMTTLDETNDQ 201
           G+  KR R+   A              +SGLE+GNFP EVSS+AVFRCVR++++D+  ++
Sbjct: 181 GSVPKRQRERIPARSTSMAYTRIPSNNTSGLEVGNFPPEVSSSAVFRCVRVSSVDDEEEE 240

[Close]
BLAST of Carg14168 vs. TAIR10
Match: AT3G51060.1 (Lateral root primordium (LRP) protein-related)

HSP 1 Score: 171.8 bits (434), Expect = 5.8e-43
Identity = 87/144 (60.42%), Postives = 105/144 (72.92%), Query Frame = 0 

Query: 80  ISCQDCGNQAKKDCLHMRCRTCCKSRGFDCETHVKSTWVPASKRRERHLR----SDGTNL 139
           +SCQDCGNQAKKDC HMRCRTCCKSRGF+C THV+STWVPA+KRRER  +       T L
Sbjct: 142 VSCQDCGNQAKKDCSHMRCRTCCKSRGFECSTHVRSTWVPAAKRRERQQQLATVQPQTQL 201

Query: 140 -------KRPRDNTAAS------------SGLEMGNFPVEVSSTAVFRCVRMTTLDETND 199
                  KR R+N  A+            SGLE+GNFP EVSS+AVFRCVR++++++  +
Sbjct: 202 PRGESVPKRHRENLPATSSSLVCTRIPSHSGLEVGNFPAEVSSSAVFRCVRVSSVEDGEE 261

Query: 200 QFAYQTAVNIGGHTFKGILYDHGP 201
           +FAYQTAV+IGGH FKGILYD GP
Sbjct: 262 EFAYQTAVSIGGHIFKGILYDLGP 285

[Close]
BLAST of Carg14168 vs. TAIR10
Match: AT1G19790.1 (SHI-related sequence 7)

HSP 1 Score: 164.9 bits (416), Expect = 7.0e-41
Identity = 88/176 (50.00%), Postives = 107/176 (60.80%), Query Frame = 0 

Query: 58  DESPPRSSLVMLRSGRNGGGQVISCQDCGNQAKKDCLHMRCRTCCKSRGFDCETHVKSTW 117
           D  P RSS       R G    ++CQDCGNQAKKDC HMRCRTCCKSRGFDC+THVKSTW
Sbjct: 98  DHEPVRSSTGGFTVTRQGN---MNCQDCGNQAKKDCPHMRCRTCCKSRGFDCQTHVKSTW 157

Query: 118 VPASKRRERHLRSDGTNLKRPRDN---------------------------------TAA 177
           V A+KRRER  +      KR RD                                   A+
Sbjct: 158 VSAAKRRERQAQLAVLPAKRIRDANSRXXXXXXXXXXXXXXXXXXXXXXXXXCTRVVNAS 217

Query: 178 SSGLEMGNFPVEVSSTAVFRCVRMTTLDETNDQFAYQTAVNIGGHTFKGILYDHGP 201
           SSGLE  + P E+SS AVFRC+R++++D+ ++++AYQTAV+IGGH FKGILYD GP
Sbjct: 218 SSGLETSHLPPEISSPAVFRCMRVSSIDDEDEEYAYQTAVSIGGHVFKGILYDQGP 270

[Close]
BLAST of Carg14168 vs. TAIR10
Match: AT1G75520.1 (SHI-related sequence 5)

HSP 1 Score: 150.6 bits (379), Expect = 1.4e-36
Identity = 118/235 (50.21%), Postives = 137/235 (58.30%), Query Frame = 0 

Query: 73  RNGGGQVISCQDCGNQAKKDCLHMRCRTCCKSRGFDCETHVKSTWVPASKRRER------ 132
           R GG   ++CQDCGNQAKKDC HMRCRTCCKSRGF C+THVKSTWVPA+KRRER      
Sbjct: 119 RQGG---MNCQDCGNQAKKDCPHMRCRTCCKSRGFHCQTHVKSTWVPAAKRRERLAQLAS 178

Query: 133 ---HLRSD---------------------------GTNLKRPR-DNTAASSGLEMG-NFP 192
              H  S                               L   R  N  ++SGLE+  + P
Sbjct: 179 LQHHSASSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLANTRVVNANSNSGLEVSQHLP 238

Query: 193 VEVSSTAVFRCVRMTTLDETNDQ--FAYQTAVNIGGHTFKGILYDHGPEXXXXXXXXXXX 252
            EV+S A+FRCVR+++++E  D   +AYQTAVNIGGH FKGILYD GPE           
Sbjct: 239 PEVNSPAIFRCVRVSSIEEDEDDQAYAYQTAVNIGGHIFKGILYDQGPE---HQDNHHLN 298

Query: 253 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYPAPLNTYVAAGTQFFLPPTS 268
                 XXXXXXXXXXXXXXXXXXX         YPA LN+++ AGT FF PP S
Sbjct: 299 LLASTAXXXXXXXXXXXXXXXXXXXGLMLDPSSLYPAQLNSFI-AGTPFFTPPRS 346

[Close]
BLAST of Carg14168 vs. TAIR10
Match: AT4G36260.1 (Lateral root primordium (LRP) protein-related)

HSP 1 Score: 148.7 bits (374), Expect = 5.2e-36
Identity = 81/155 (52.26%), Postives = 95/155 (61.29%), Query Frame = 0 

Query: 80  ISCQDCGNQAKKDCLHMRCRTCCKSRGFDCETHVKSTWVPASKRRERHLRSDGTNL---- 139
           ISC+DCGNQAKKDC HMRCRTCCKSRGFDC THV+STW+P ++                 
Sbjct: 92  ISCRDCGNQAKKDCTHMRCRTCCKSRGFDCSTHVRSTWIPVARXXXXXXXXXXXXXXXXX 151

Query: 140 ---------------KRPRDNT-----------AASSGLEMG--NFPVEVSSTAVFRCVR 199
                          KR RD T           + S+GLEMG  +FP EVSS A+FRCV+
Sbjct: 152 XXXXXXXXXXXXXIPKRHRDPTLPGTSSSSRLPSHSAGLEMGEASFPGEVSSDALFRCVK 211

Query: 200 MTTLDETND-QFAYQTAVNIGGHTFKGILYDHGPE 202
           M+ +D+  D Q+AYQT VNIGGH FKGILYD GPE
Sbjct: 212 MSGVDDGGDGQYAYQTTVNIGGHLFKGILYDQGPE 246

[Close]
BLAST of Carg14168 vs. Swiss-Prot
Match: sp|Q9XGX0|SHI_ARATH (Protein SHORT INTERNODES OS=Arabidopsis thaliana OX=3702 GN=SHI PE=1 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 9.4e-43
Identity = 113/263 (42.97%), Postives = 138/263 (52.47%), Query Frame = 0 

Query: 1   MAGFYPL---GGGREPNYHLPTXXXXXXDGL---FWYRNYES--------------LEIW 60
           MAGF+ L   GGG  P+ H          G     W RN  S              LE+W
Sbjct: 1   MAGFFSLGHGGGGNTPDNHRTNTNNPSSSGTESWLWCRNPNSNADGGEAGPSYKGTLELW 60

Query: 61  QQQQVQ------------------QQAGEGFVYSGDESPPRS--SLVMLRSGRNGGGQVI 120
           Q    Q                    AG G   S       S  +L+M+RSG   GG   
Sbjct: 61  QHPNNQXXXXXXXXXXXXXLDLYTSAAGLGVGPSNRSLIETSGGALMMMRSGSGSGGP-- 120

Query: 121 SCQDCGNQAKKDCLHMRCRTCCKSRGFDCETHVKSTWVPASKRRERHLRSD--------- 180
           SCQDCGNQ+KK   HMRCRTCCKSRG DC THVKSTWVPA+KRRER  +           
Sbjct: 121 SCQDCGNQSKKXXSHMRCRTCCKSRGLDCPTHVKSTWVPAAKRRERQQQLSTGQQPQQLG 180

Query: 181 GTNLKRPRDNTAA--------------SSGLEMGNFPVEVSSTAVFRCVRMTTLDETNDQ 201
           G+  KR R+   A              +SGLE+GNFP EVSS+AVFRCVR++++D+  ++
Sbjct: 181 GSVPKRQRERIPARSTSMAYTRIPSNNTSGLEVGNFPPEVSSSAVFRCVRVSSVDDEEEE 240

[Close]
BLAST of Carg14168 vs. Swiss-Prot
Match: sp|Q9SD40|SRS1_ARATH (Protein SHI RELATED SEQUENCE 1 OS=Arabidopsis thaliana OX=3702 GN=SRS1 PE=1 SV=2)

HSP 1 Score: 171.8 bits (434), Expect = 1.0e-41
Identity = 87/144 (60.42%), Postives = 105/144 (72.92%), Query Frame = 0 

Query: 80  ISCQDCGNQAKKDCLHMRCRTCCKSRGFDCETHVKSTWVPASKRRERHLR----SDGTNL 139
           +SCQDCGNQAKKDC HMRCRTCCKSRGF+C THV+STWVPA+KRRER  +       T L
Sbjct: 142 VSCQDCGNQAKKDCSHMRCRTCCKSRGFECSTHVRSTWVPAAKRRERQQQLATVQPQTQL 201

Query: 140 -------KRPRDNTAAS------------SGLEMGNFPVEVSSTAVFRCVRMTTLDETND 199
                  KR R+N  A+            SGLE+GNFP EVSS+AVFRCVR++++++  +
Sbjct: 202 PRGESVPKRHRENLPATSSSLVCTRIPSHSGLEVGNFPAEVSSSAVFRCVRVSSVEDGEE 261

Query: 200 QFAYQTAVNIGGHTFKGILYDHGP 201
           +FAYQTAV+IGGH FKGILYD GP
Sbjct: 262 EFAYQTAVSIGGHIFKGILYDLGP 285

[Close]
BLAST of Carg14168 vs. Swiss-Prot
Match: sp|Q9FXH7|SRS7_ARATH (Protein SHI RELATED SEQUENCE 7 OS=Arabidopsis thaliana OX=3702 GN=SRS7 PE=1 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 1.3e-39
Identity = 88/176 (50.00%), Postives = 107/176 (60.80%), Query Frame = 0 

Query: 58  DESPPRSSLVMLRSGRNGGGQVISCQDCGNQAKKDCLHMRCRTCCKSRGFDCETHVKSTW 117
           D  P RSS       R G    ++CQDCGNQAKKDC HMRCRTCCKSRGFDC+THVKSTW
Sbjct: 98  DHEPVRSSTGGFTVTRQGN---MNCQDCGNQAKKDCPHMRCRTCCKSRGFDCQTHVKSTW 157

Query: 118 VPASKRRERHLRSDGTNLKRPRDN---------------------------------TAA 177
           V A+KRRER  +      KR RD                                   A+
Sbjct: 158 VSAAKRRERQAQLAVLPAKRIRDANSRXXXXXXXXXXXXXXXXXXXXXXXXXCTRVVNAS 217

Query: 178 SSGLEMGNFPVEVSSTAVFRCVRMTTLDETNDQFAYQTAVNIGGHTFKGILYDHGP 201
           SSGLE  + P E+SS AVFRC+R++++D+ ++++AYQTAV+IGGH FKGILYD GP
Sbjct: 218 SSGLETSHLPPEISSPAVFRCMRVSSIDDEDEEYAYQTAVSIGGHVFKGILYDQGP 270

[Close]
BLAST of Carg14168 vs. Swiss-Prot
Match: sp|Q9LQZ5|SRS5_ARATH (Protein SHI RELATED SEQUENCE 5 OS=Arabidopsis thaliana OX=3702 GN=SRS5 PE=1 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 2.5e-35
Identity = 118/235 (50.21%), Postives = 137/235 (58.30%), Query Frame = 0 

Query: 73  RNGGGQVISCQDCGNQAKKDCLHMRCRTCCKSRGFDCETHVKSTWVPASKRRER------ 132
           R GG   ++CQDCGNQAKKDC HMRCRTCCKSRGF C+THVKSTWVPA+KRRER      
Sbjct: 119 RQGG---MNCQDCGNQAKKDCPHMRCRTCCKSRGFHCQTHVKSTWVPAAKRRERLAQLAS 178

Query: 133 ---HLRSD---------------------------GTNLKRPR-DNTAASSGLEMG-NFP 192
              H  S                               L   R  N  ++SGLE+  + P
Sbjct: 179 LQHHSASSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLANTRVVNANSNSGLEVSQHLP 238

Query: 193 VEVSSTAVFRCVRMTTLDETNDQ--FAYQTAVNIGGHTFKGILYDHGPEXXXXXXXXXXX 252
            EV+S A+FRCVR+++++E  D   +AYQTAVNIGGH FKGILYD GPE           
Sbjct: 239 PEVNSPAIFRCVRVSSIEEDEDDQAYAYQTAVNIGGHIFKGILYDQGPE---HQDNHHLN 298

Query: 253 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYPAPLNTYVAAGTQFFLPPTS 268
                 XXXXXXXXXXXXXXXXXXX         YPA LN+++ AGT FF PP S
Sbjct: 299 LLASTAXXXXXXXXXXXXXXXXXXXGLMLDPSSLYPAQLNSFI-AGTPFFTPPRS 346

[Close]
BLAST of Carg14168 vs. Swiss-Prot
Match: sp|O65517|SRS2_ARATH (Protein SHI RELATED SEQUENCE 2 OS=Arabidopsis thaliana OX=3702 GN=SRS2 PE=1 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 9.4e-35
Identity = 81/155 (52.26%), Postives = 95/155 (61.29%), Query Frame = 0 

Query: 80  ISCQDCGNQAKKDCLHMRCRTCCKSRGFDCETHVKSTWVPASKRRERHLRSDGTNL---- 139
           ISC+DCGNQAKKDC HMRCRTCCKSRGFDC THV+STW+P ++                 
Sbjct: 92  ISCRDCGNQAKKDCTHMRCRTCCKSRGFDCSTHVRSTWIPVARXXXXXXXXXXXXXXXXX 151

Query: 140 ---------------KRPRDNT-----------AASSGLEMG--NFPVEVSSTAVFRCVR 199
                          KR RD T           + S+GLEMG  +FP EVSS A+FRCV+
Sbjct: 152 XXXXXXXXXXXXXIPKRHRDPTLPGTSSSSRLPSHSAGLEMGEASFPGEVSSDALFRCVK 211

Query: 200 MTTLDETND-QFAYQTAVNIGGHTFKGILYDHGPE 202
           M+ +D+  D Q+AYQT VNIGGH FKGILYD GPE
Sbjct: 212 MSGVDDGGDGQYAYQTTVNIGGHLFKGILYDQGPE 246

[Close]
BLAST of Carg14168 vs. TrEMBL
Match: tr|A0A1S3CNX3|A0A1S3CNX3_CUCME (protein SHI RELATED SEQUENCE 1-like OS=Cucumis melo OX=3656 GN=LOC103503109 PE=4 SV=1)

HSP 1 Score: 312.4 bits (799), Expect = 9.9e-82
Identity = 188/290 (64.83%), Postives = 206/290 (71.03%), Query Frame = 0 

Query: 1   MAGFYPL----GGGREPNYHLPT------XXXXXXDGLFWYRNYESLEIWQQQ------- 60
           MAGF+PL     GGR PNYH PT            +GLFWY+NYE LE W+ +       
Sbjct: 1   MAGFFPLDGGGSGGRVPNYHFPTPTTGGEIIHPTTEGLFWYKNYERLETWEGEXXXXXXX 60

Query: 61  -QVQQQAGEGFVYSGDESPPRSSLVMLRSGRNG---GGQVISCQDCGNQAKKDCLHMRCR 120
                   EGFVYSGDESP RSSLVM+RSGR G   GG V SCQDCGNQAKKDC HMRCR
Sbjct: 61  XXXXXXXXEGFVYSGDESPARSSLVMVRSGRGGXXXGGPVTSCQDCGNQAKKDCAHMRCR 120

Query: 121 TCCKSRGFDCETHVKSTWVPASKRRERHLRSDGTNLKRPRDN--TAASSGLEMGNFPVEV 180
           TCCKSRGF+CETHVKSTWVPASKRR+R LRSDG N KRP+D      SSGL+M NFP+EV
Sbjct: 121 TCCKSRGFECETHVKSTWVPASKRRDRLLRSDGLNSKRPKDTHYHPTSSGLDMANFPMEV 180

Query: 181 SSTAVFRCVRMTTLDETNDQFAYQTAVNIGGHTFKGILYDHGPEXXXXXXXXXXXXXXXX 240
           ++ AVFRCVRMTTLDET+DQ+AYQTAVNIGGH FKGILYDHGPE                
Sbjct: 181 TTPAVFRCVRMTTLDETDDQYAYQTAVNIGGHIFKGILYDHGPE---------------- 240

Query: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXYPAPLNTYVAAGTQFFLPPTS 268
                    XXXXXXXXXXXXXXXXXXXXYP PL+TY+ AGTQFFLPP+S
Sbjct: 241 ---------XXXXXXXXXXXXXXXXXXXXYPTPLSTYITAGTQFFLPPSS 265

[Close]
BLAST of Carg14168 vs. TrEMBL
Match: tr|A0A0A0KUG2|A0A0A0KUG2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G043960 PE=4 SV=1)

HSP 1 Score: 261.2 bits (666), Expect = 2.6e-66
Identity = 159/289 (55.02%), Postives = 177/289 (61.25%), Query Frame = 0 

Query: 1   MAGFYPL----GGGREPNYHLPT------XXXXXXDGLFWYRNYESLEIWQQQ------- 60
           MAGF+PL     GGR PNYH PT            +GLFWY+NYE LE W+ +       
Sbjct: 1   MAGFFPLDGGGSGGRVPNYHFPTPTTGGEIIHPTTEGLFWYKNYERLETWEGEXXXXXXX 60

Query: 61  ---QVQQQAGEGFVYSGDESPPRSSLVMLRSGRNGGGQVISCQDCGNQAKKDCLHMRCRT 120
                                                 V SCQDCGNQAKKDC+HMRCRT
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVTSCQDCGNQAKKDCVHMRCRT 120

Query: 121 CCKSRGFDCETHVKSTWVPASKRRERHLRSDGTNLKRPRDN--TAASSGLEMGNFPVEVS 180
           CCKSRGF+CETHVKSTWVPASKRR+RHLRSDG N KRP+D      SSGL+MGNFP EV+
Sbjct: 121 CCKSRGFECETHVKSTWVPASKRRDRHLRSDGLNSKRPKDTHYHPTSSGLDMGNFPTEVT 180

Query: 181 STAVFRCVRMTTLDETNDQFAYQTAVNIGGHTFKGILYDHGPEXXXXXXXXXXXXXXXXX 240
           + AVFRCVRMT+LDET+DQ+AYQTAVNIGG  FKGILYDHGPE                 
Sbjct: 181 TPAVFRCVRMTSLDETDDQYAYQTAVNIGGRIFKGILYDHGPE----------------- 240

Query: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXYPAPLNTYVAAGTQFFLPPTS 268
                    XXXXXXXXXXXXXXX    YP PL+TY+ AGTQFFLPP+S
Sbjct: 241 ---------XXXXXXXXXXXXXXXPTPPYPTPLSTYITAGTQFFLPPSS 263

[Close]
BLAST of Carg14168 vs. TrEMBL
Match: tr|A0A2C9WCY1|A0A2C9WCY1_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_02G100100 PE=4 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 1.7e-49
Identity = 113/217 (52.07%), Postives = 137/217 (63.13%), Query Frame = 0 

Query: 29  FWYRN----YESLEIWQQQQVQQQ-------------AGEGF------VYSGDESPPRSS 88
           +WY+N    Y+  E+WQQQ+   Q             AG G       +   DES  RS+
Sbjct: 40  YWYKNEDIPYKGFELWQQQEFLYQRHQNPQQHLYSSAAGLGVGPSRSSINVSDESSSRSA 99

Query: 89  LVMLRSGRNGGGQVISCQDCGNQAKKDCLHMRCRTCCKSRGFDCETHVKSTWVPASKRRE 148
            +M+RS    G   +SCQDCGNQAKKDC+HMRCRTCC+SRG DC THVKSTWVPASKRRE
Sbjct: 100 FMMMRSSSGVG---VSCQDCGNQAKKDCIHMRCRTCCRSRGLDCPTHVKSTWVPASKRRE 159

Query: 149 RHLRSD--------GTNLKRPRDNTAASS-------------GLEMGNFPVEVSSTAVFR 202
           R  + +        G N KR  +N  +SS             GLE+GNFP EVSS AVFR
Sbjct: 160 RQQQLNALQQQQLRGENPKRLSENPCSSSLACIRLPNSASDAGLELGNFPAEVSSPAVFR 219

[Close]
BLAST of Carg14168 vs. TrEMBL
Match: tr|A0A2R6S2L9|A0A2R6S2L9_ACTCH (Protein SHI RELATED SEQUENCE like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc01042 PE=4 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 6.5e-49
Identity = 136/322 (42.24%), Postives = 162/322 (50.31%), Query Frame = 0 

Query: 1   MAGFYPLGGGREPNYH-----------LPTXXXXXXDGLFWYRN----YESLEIWQQQQ- 60
           MAGF+ LGGGRE N +                    +  F YRN    Y+  E+WQ QQ 
Sbjct: 1   MAGFFSLGGGRETNTNDQDHQQQTQNPNNPVAEISPENWFLYRNEDISYKGFELWQHQQQ 60

Query: 61  --------------------VQQQAGEGFVYSGD--ESPPRSSLVMLRSGRNGGGQVISC 120
                               +   AG   V      + P RS  VM+RSG  GGG  ISC
Sbjct: 61  PXXXXXXXXXXXXXXXQLHNLYSSAGGLTVGPSSLVDEPTRSGFVMMRSG--GGG--ISC 120

Query: 121 QDCGNQAKKDCLHMRCRTCCKSRGFDCETHVKSTWVPASKRRERHLRSDGTNLKRPRDNT 180
           QDCGNQAKKDC HMRCRTCCKSRGF C THVKSTWVPA+KRRER  R +  N KR R++ 
Sbjct: 121 QDCGNQAKKDCTHMRCRTCCKSRGFQCHTHVKSTWVPAAKRRERQQRVERENPKRMRESN 180

Query: 181 --------------AASSGLEMGNFPVEVSSTAVFRCVRMTTLDE-TNDQFAYQTAVNIG 240
                         A +SGLE+GNFP EV+S AVFRCVR++ ++   +D++AYQTAVNIG
Sbjct: 181 TPIASSSLVCTRLPAIASGLEVGNFPAEVNSAAVFRCVRVSAMNNGGDDEYAYQTAVNIG 240

Query: 241 GHTFKGILYDHGPE--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 268
           GH FKGILYD G E                                              
Sbjct: 241 GHLFKGILYDQGAESQYMAGESSSGTASGLNLIGTAAATDSSAVTATAADSPAAAFLDPS 300

[Close]
BLAST of Carg14168 vs. TrEMBL
Match: tr|A0A059AGY1|A0A059AGY1_EUCGR (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_J02389 PE=4 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 1.8e-46
Identity = 119/245 (48.57%), Postives = 144/245 (58.78%), Query Frame = 0 

Query: 1   MAGFYPLGGG----REPNYHLP-----------TXXXXXXDGLFWYRN---------YES 60
           MAGF+ +G G     +   H P                   G  WYRN         ++ 
Sbjct: 1   MAGFFSIGSGGRGTHKQQSHPPAVAEELETQQANNSISVDPGWLWYRNGVVSSSSSSHKG 60

Query: 61  LEIWQQQQVQQQ---AGEGFVYSGDESPPR---SSLVMLRSG-------RNGGGQVISCQ 120
            E+  Q Q QQQ     +  +Y      PR   S    LRSG       R GG   ISCQ
Sbjct: 61  FELCHQLQPQQQLQLQHQQDLYLSSPPSPRMNASDDESLRSGPSAFLLMREGG---ISCQ 120

Query: 121 DCGNQAKKDCLHMRCRTCCKSRGFDCETHVKSTWVPASKRRER---HLRSDGTNLKRPRD 180
           DCGNQAKKDC+H RCRTCCKSRG  C+THVKSTWVPAS+RRER    L   G  +KR R+
Sbjct: 121 DCGNQAKKDCVHFRCRTCCKSRGLPCDTHVKSTWVPASRRRERQQLQLLHGGDCVKRLRE 180

Query: 181 N----TAASSGLEMGNFPVEVSSTAVFRCVRMTTLDETNDQFAYQTAVNIGGHTFKGILY 202
           +     A SSGLEMGNFP EV+S+A+FRCVR++++D+ +DQ+AYQTAVNIGGH FKGILY
Sbjct: 181 DHDLPHANSSGLEMGNFPAEVNSSALFRCVRVSSIDDNDDQYAYQTAVNIGGHVFKGILY 240

The following BLAST results are available for this feature:
BLAST of Carg14168 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023552309.12.5e-11696.64protein SHI RELATED SEQUENCE 1-like isoform X1 [Cucurbita pepo subsp. pepo][more]
XP_022942307.19.3e-11698.50protein SHORT INTERNODES-like [Cucurbita moschata] >XP_022942308.1 protein SHORT... [more]
XP_022982329.12.3e-11495.51protein SHI RELATED SEQUENCE 1-like [Cucurbita maxima] >XP_022982338.1 protein S... [more]
XP_023552316.11.1e-11395.90protein SHI RELATED SEQUENCE 1-like isoform X2 [Cucurbita pepo subsp. pepo][more]
XP_008465489.11.5e-8164.83PREDICTED: protein SHI RELATED SEQUENCE 1-like [Cucumis melo][more]
BLAST of Carg14168 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G66350.15.2e-4442.97Lateral root primordium (LRP) protein-related[more]
AT3G51060.15.8e-4360.42Lateral root primordium (LRP) protein-related[more]
AT1G19790.17.0e-4150.00SHI-related sequence 7[more]
AT1G75520.11.4e-3650.21SHI-related sequence 5[more]
AT4G36260.15.2e-3652.26Lateral root primordium (LRP) protein-related[more]
BLAST of Carg14168 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9XGX0|SHI_ARATH9.4e-4342.97Protein SHORT INTERNODES OS=Arabidopsis thaliana OX=3702 GN=SHI PE=1 SV=1[more]
sp|Q9SD40|SRS1_ARATH1.0e-4160.42Protein SHI RELATED SEQUENCE 1 OS=Arabidopsis thaliana OX=3702 GN=SRS1 PE=1 SV=2[more]
sp|Q9FXH7|SRS7_ARATH1.3e-3950.00Protein SHI RELATED SEQUENCE 7 OS=Arabidopsis thaliana OX=3702 GN=SRS7 PE=1 SV=1[more]
sp|Q9LQZ5|SRS5_ARATH2.5e-3550.21Protein SHI RELATED SEQUENCE 5 OS=Arabidopsis thaliana OX=3702 GN=SRS5 PE=1 SV=1[more]
sp|O65517|SRS2_ARATH9.4e-3552.26Protein SHI RELATED SEQUENCE 2 OS=Arabidopsis thaliana OX=3702 GN=SRS2 PE=1 SV=1[more]
BLAST of Carg14168 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3CNX3|A0A1S3CNX3_CUCME9.9e-8264.83protein SHI RELATED SEQUENCE 1-like OS=Cucumis melo OX=3656 GN=LOC103503109 PE=4... [more]
tr|A0A0A0KUG2|A0A0A0KUG2_CUCSA2.6e-6655.02Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G043960 PE=4 SV=1[more]
tr|A0A2C9WCY1|A0A2C9WCY1_MANES1.7e-4952.07Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_02G100100 PE=4 SV=... [more]
tr|A0A2R6S2L9|A0A2R6S2L9_ACTCH6.5e-4942.24Protein SHI RELATED SEQUENCE like OS=Actinidia chinensis var. chinensis OX=15908... [more]
tr|A0A059AGY1|A0A059AGY1_EUCGR1.8e-4648.57Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_J02389 PE=4 SV... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007818SHI
IPR006511SHI_C
IPR006510Znf_LRP1
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg14168-RACarg14168-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006510Zinc finger, lateral root primordium type 1TIGRFAMTIGR01623TIGR01623coord: 81..123
e-value: 3.9E-28
score: 95.1
NoneNo IPR availablePFAMPF05142DUF702coord: 80..201
e-value: 3.3E-52
score: 176.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 192..223
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 202..216
NoneNo IPR availablePANTHERPTHR31604:SF14PROTEIN SHI RELATED SEQUENCE 1-RELATEDcoord: 1..267
IPR006511SHORT INTERNODES, C-terminalTIGRFAMTIGR01624TIGR01624coord: 153..200
e-value: 2.4E-23
score: 79.8
IPR007818SHI protein familyPANTHERPTHR31604FAMILY NOT NAMEDcoord: 1..267

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg14168Cla014559Watermelon (97103) v1carwmB0940
Carg14168Csa4G043960Cucumber (Chinese Long) v2carcuB0958
Carg14168ClCG07G008820Watermelon (Charleston Gray)carwcgB0916
Carg14168CSPI04G05220Wild cucumber (PI 183967)carcpiB0981
Carg14168Cucsa.201140Cucumber (Gy14) v1carcgyB1060
Carg14168CmaCh04G007690Cucurbita maxima (Rimu)carcmaB1288
Carg14168CmaCh16G006400Cucurbita maxima (Rimu)carcmaB1286
Carg14168CmoCh16G006990Cucurbita moschata (Rifu)carcmoB1258
Carg14168Lsi07G002300Bottle gourd (USVL1VR-Ls)carlsiB859
Carg14168Cp4.1LG19g09000Cucurbita pepo (Zucchini)carcpeB1304
Carg14168Cp4.1LG01g06910Cucurbita pepo (Zucchini)carcpeB1303
Carg14168Cp4.1LG14g01720Cucurbita pepo (Zucchini)carcpeB1301
Carg14168CsGy4G005130Cucumber (Gy14) v2carcgybB0931
Carg14168CsaV3_4G005360Cucumber (Chinese Long) v3carcucB0982
Carg14168Cla97C07G135860Watermelon (97103) v2carwmbB0989
Carg14168Bhi01G001886Wax gourdcarwgoB1086
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg14168Carg05760Silver-seed gourdcarcarB646
The following block(s) are covering this gene:
GeneOrganismBlock
Carg14168Watermelon (97103) v2carwmbB0987
Carg14168Silver-seed gourdcarcarB602
Carg14168Cucurbita maxima (Rimu)carcmaB1289
Carg14168Cucurbita moschata (Rifu)carcmoB1259
Carg14168Cucurbita pepo (Zucchini)carcpeB1300
Carg14168Cucurbita pepo (Zucchini)carcpeB1302
Carg14168Wild cucumber (PI 183967)carcpiB0982
Carg14168Melon (DHL92) v3.5.1carmeB0924
Carg14168Melon (DHL92) v3.6.1carmedB0930
Carg14168Watermelon (Charleston Gray)carwcgB0915
Carg14168Watermelon (97103) v1carwmB0942