Cp4.1LG01g03530 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g03530
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionAconitate hydratase
LocationCp4.1LG01 : 1702572 .. 1703581 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAAAAAAAAAAAAAAAAAAAAAAAACATCATTAAAAACATGATTAAAAAGACATTATAGTGCCTCTGTTCATTGGTAATCTCAAGTAAAAAGGAAGCTGCTTTGGTGCTCTATAAATACACATAACCCAATGGCTCAGAATTCATCCCCAAAGAGAGCTTGGTGAGAATGGGTTTCAAGAGAGCGCCCATATGGTTGAGTGTGATGGTTCTTGTTCTTGTCCTTGTCCTTGTCCATATGGCTACAGGGAGACCCGTCCGGACTACTACTTCACCTATCGCTGATTGTAAGCTCTCATATGCCTTTTGCTTTCATCTCTTTAATTCTAACTAACTTTTATTGTGTTTTATGAGGGAATTTGTGGTTTTGTTGTGTAGTTGAGACCATGAATATGAGTGGGGAGACTGCGTTTGGGACTCAGCTTCTGAGTTCAGCTCGCCCCAGAGGAGGCAACTATATTGACAACCCACAGGCGGCGAACAAGGCCGCCATCCAAAGCTCTGGCTATCACCCATGATGGCTGTGTCAAATTTGAGTAACTGCAGTGATGTTCCTATGTTGGCTGAAGTGTTATGAACAAATAAGAGCTTGAGTTTTGTTGTGATGTTTTTTTCTAACTGTTTTGATTATGTGTTTTCTAGTCAGTGTTCTTTTTGGAATCTCGAGTTTAACGGTCTAAGTCTACTACTACTACATATTGGTTGCTTTTGTCTGTTACATATTTATGTTAACTTCACTATTTAAAAGGTTTTTACTATGGAGAGGGTCTAGCCCTACTCTAACTAGTGTCTTGCATTGTCTGTTGACTAATTGTGAGATCTTATATTGGTTGGAAAGAGAAATGAAATTTCTTATAAGGGCTTGGAAACAAAACATTTCTTATAAGAGTGTGAAAATCTCTTCATAGTATATGTGTTTTAAAACCGTGAGGCTAATGATGATACGTAACTGACCAAAGTGGACAATATTTGCTAGCGGTAGACTTGAGCTGTTTTATATCAATGTGGAC

mRNA sequence

AAAAAAAAAAAAAAAAAAAAAAAAAAACATCATTAAAAACATGATTAAAAAGACATTATAGTGCCTCTGTTCATTGGTAATCTCAAGTAAAAAGGAAGCTGCTTTGGTGCTCTATAAATACACATAACCCAATGGCTCAGAATTCATCCCCAAAGAGAGCTTGGTGAGAATGGGTTTCAAGAGAGCGCCCATATGGTTGAGTGTGATGGTTCTTGTTCTTGTCCTTGTCCTTGTCCATATGGCTACAGGGAGACCCGTCCGGACTACTACTTCACCTATCGCTGATTTTGAGACCATGAATATGAGTGGGGAGACTGCGTTTGGGACTCAGCTTCTGAGTTCAGCTCGCCCCAGAGGAGGCAACTATATTGACAACCCACAGGCGGCGAACAAGGCCGCCATCCAAAGCTCTGGCTATCACCCATGATGGCTGTGTCAAATTTGAGTAACTGCAGTGATGTTCCTATGTTGGCTGAAGTGTTATGAACAAATAAGAGCTTGAGTTTTGTTGTGATGTTTTTTTCTAACTGTTTTGATTATGTGTTTTCTAGTCAGTGTTCTTTTTGGAATCTCGAGTTTAACGGTCTAAGTCTACTACTACTACATATTGGTTGCTTTTGTCTGTTACATATTTATGTTAACTTCACTATTTAAAAGGTTTTTACTATGGAGAGGGTCTAGCCCTACTCTAACTAGTGTCTTGCATTGTCTGTTGACTAATTGTGAGATCTTATATTGGTTGGAAAGAGAAATGAAATTTCTTATAAGGGCTTGGAAACAAAACATTTCTTATAAGAGTGTGAAAATCTCTTCATAGTATATGTGTTTTAAAACCGTGAGGCTAATGATGATACGTAACTGACCAAAGTGGACAATATTTGCTAGCGGTAGACTTGAGCTGTTTTATATCAATGTGGAC

Coding sequence (CDS)

ATGGGTTTCAAGAGAGCGCCCATATGGTTGAGTGTGATGGTTCTTGTTCTTGTCCTTGTCCTTGTCCATATGGCTACAGGGAGACCCGTCCGGACTACTACTTCACCTATCGCTGATTTTGAGACCATGAATATGAGTGGGGAGACTGCGTTTGGGACTCAGCTTCTGAGTTCAGCTCGCCCCAGAGGAGGCAACTATATTGACAACCCACAGGCGGCGAACAAGGCCGCCATCCAAAGCTCTGGCTATCACCCATGA

Protein sequence

MGFKRAPIWLSVMVLVLVLVLVHMATGRPVRTTTSPIADFETMNMSGETAFGTQLLSSARPRGGNYIDNPQAANKAAIQSSGYHP
Homology
[Close]
BLAST of Cp4.1LG01g03530 vs. TrEMBL
Match: A0A0A0KXI8_CUCSA (Aconitate hydratase OS=Cucumis sativus GN=Csa_4G017200 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 5.8e-14
Identity = 48/85 (56.47%), Postives = 60/85 (70.59%), Query Frame = 1 

Query: 1  MGFKRAPIWLSVMVLVLVLVLVHMATGRPVRTTTSPIADFETMNMSGETAFGTQLLSSAR 60
          MG KR  I+ SVM+L+L   L +MATGR +  +TS  ADFETMNM G+   G++ LSSA 
Sbjct: 1  MGLKRESIFFSVMLLLL---LSNMATGRVLFHSTSLHADFETMNMDGKNRDGSRFLSSAL 60

Query: 61 PRGGNYIDNPQAANKAAIQSSGYHP 86
          PRGGNYI+ P AA KAA+  +GY P
Sbjct: 61 PRGGNYINKPHAAEKAAVGRAGYQP 82

[Close]
BLAST of Cp4.1LG01g03530 vs. NCBI nr
Match: gi|700197974|gb|KGN53132.1| (Aconitate hydratase [Cucumis sativus])

HSP 1 Score: 84.7 bits (208), Expect = 8.3e-14
Identity = 48/85 (56.47%), Postives = 60/85 (70.59%), Query Frame = 1 

Query: 1  MGFKRAPIWLSVMVLVLVLVLVHMATGRPVRTTTSPIADFETMNMSGETAFGTQLLSSAR 60
          MG KR  I+ SVM+L+L   L +MATGR +  +TS  ADFETMNM G+   G++ LSSA 
Sbjct: 1  MGLKRESIFFSVMLLLL---LSNMATGRVLFHSTSLHADFETMNMDGKNRDGSRFLSSAL 60

Query: 61 PRGGNYIDNPQAANKAAIQSSGYHP 86
          PRGGNYI+ P AA KAA+  +GY P
Sbjct: 61 PRGGNYINKPHAAEKAAVGRAGYQP 82

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g03530 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g03530 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KXI8_CUCSA5.8e-1456.47Aconitate hydratase OS=Cucumis sativus GN=Csa_4G017200 PE=4 SV=1[more]
BLAST of Cp4.1LG01g03530 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g03530 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700197974|gb|KGN53132.1|8.3e-1456.47Aconitate hydratase [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g03530.1Cp4.1LG01g03530.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG01g03530Cucsa.094330Cucumber (Gy14) v1cgycpeB0191
Cp4.1LG01g03530CmaCh04G003450Cucurbita maxima (Rimu)cmacpeB720
Cp4.1LG01g03530CmoCh04G003620Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g03530Csa4G017200Cucumber (Chinese Long) v2cpecuB401
Cp4.1LG01g03530ClCG07G016740Watermelon (Charleston Gray)cpewcgB403
Cp4.1LG01g03530CSPI04G03860Wild cucumber (PI 183967)cpecpiB398
Cp4.1LG01g03530CsaV3_4G003880Cucumber (Chinese Long) v3cpecucB0498
Cp4.1LG01g03530Bhi01G002013Wax gourdcpewgoB0512
Cp4.1LG01g03530CsGy4G003740Cucumber (Gy14) v2cgybcpeB503
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g03530Silver-seed gourdcarcpeB0527
Cp4.1LG01g03530Silver-seed gourdcarcpeB1216
Cp4.1LG01g03530Cucurbita pepo (Zucchini)cpecpeB234
Cp4.1LG01g03530Cucurbita maxima (Rimu)cmacpeB351
Cp4.1LG01g03530Cucurbita moschata (Rifu)cmocpeB311