CmoCh04G003620 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G003620
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionAconitate hydratase
LocationCmo_Chr04 : 1757644 .. 1759003 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAGACATTAGTGCCTCTGTTCATTGGTAATCTCAAGCAAAAAGGAAGCTGCTTTGGTGCTCTATAAATACCCATAACCCAATGGCTAAGAATTCATCCCCAAAGAGAGTTTGATGGGAATGGGTTTCAAGAGAGCGCCCATATTGTTGAGTGTGATGGTTCTTGTTCTTGTCCATATGGCCACAGGGAGACCTGTCCGGACTACTACTTTACCTATTGCTGATTGTAAGCTCTCATATGCCTTTTGCTTTCATCTCTTTAATTCTAACTTTTATTGTGTTTTATGAGGGAATTTGTGTTTTTGTTGCGTAGTTGAGACCATGAATATGAGTGGGGAGACTGCGTTTGGGACTCAGCTTCTGAGTTCAGCTCGCCCCAGAGGAGGCAACTATATTGACAACCCACAGGCGGCGAACAAGGCCGCCATCCAAACCTCTGGCTATCACCCATGATGGCTGTGATGTTCCTATGCTGGCTGAAGTGTTATGAACCAATAAGAGCTTGAGTTTTGTTGTGATGTTTTTTTTTTTGTAAGTGTTTTGATCCTATGTTTTCTAGTAATTGTTGTTTTTGGAATCTCGAGTGTAACCGTCTAAGTCCACTACTAGTAGATATTGTTTGCTTTTCTCTGTTACATATTTGTGTTATTTTTAAAACGTTTTTATTGTGGAGAGGGTTTAGCCTTACTCCAACCAGTGTCTTGTATTGTCTGTTCACTAATTGTGAGATCTCATATCGGTTGAAGAGATGAACGAAGCATTCCTTATAAGGGTGTGGAAACGAAGCATTCCTTATAAGTGTATGAAAATCTATCTTAGTATACATGTTTTAAAACTGTGAGACTAACGACGATACGTAACGGACCAAAGCAGACAATATTTGCTAGCGGTAGACTTGGGCTGTTTTGTATCAAAATGGACAATGTTTGTTAGCGATGGACTTGGGCTGCTACAAGACCTCTCTCTAGTAGACGTATTCTAAAATCATGAGGCTGACGACGATACATAACGAGCTAAAGCGGACAATAATATCTTCTAGCAGTGGACTGGGGTTGTTACAAAACCTCTCTCTAGTAGATGCGTTTTAAGATCATGAGGCAGACGACGATATATGACGAGCTAAAGTGGACAATAATATCTACTGGCAGTGGGCTGGAGTTCTTATAAAACCTCTCTTTAATAGACGTGTTTTAAAATTATGAGGCTGACAATAATACATACCGAGCTAAAGCGAATAATATCTGCTAGTAATAGACTTAGTTATTACATGAACGAGGAAGAGGAAGGAGAGCTAGAAAAAGAAAAAATATATGTTTATTAAAACAAAAACACAGTCCTCATGGAGTCTATGACATTAACC

mRNA sequence

AAAAGACATTAGTGCCTCTGTTCATTGGTAATCTCAAGCAAAAAGGAAGCTGCTTTGGTGCTCTATAAATACCCATAACCCAATGGCTAAGAATTCATCCCCAAAGAGAGTTTGATGGGAATGGGTTTCAAGAGAGCGCCCATATTGTTGAGTGTGATGGTTCTTGTTCTTGTCCATATGGCCACAGGGAGACCTGTCCGGACTACTACTTTACCTATTGCTGATTTTGAGACCATGAATATGAGTGGGGAGACTGCGTTTGGGACTCAGCTTCTGAGTTCAGCTCGCCCCAGAGGAGGCAACTATATTGACAACCCACAGGCGGCGAACAAGGCCGCCATCCAAACCTCTGGCTATCACCCATGATGGCTGTGATGTTCCTATGCTGGCTGAAGTGTTATGAACCAATAAGAGCTTGAGTTTTGTTGTGATGTTTTTTTTTTTGTAAGTGTTTTGATCCTATGTTTTCTAGTAATTGTTGTTTTTGGAATCTCGAGTGTAACCGTCTAAGTCCACTACTAGTAGATATTGTTTGCTTTTCTCTGTTACATATTTGTGTTATTTTTAAAACGTTTTTATTGTGGAGAGGGTTTAGCCTTACTCCAACCAGTGTCTTGTATTGTCTGTTCACTAATTGTGAGATCTCATATCGGTTGAAGAGATGAACGAAGCATTCCTTATAAGGGTGTGGAAACGAAGCATTCCTTATAAGTGTATGAAAATCTATCTTAGTATACATGTTTTAAAACTGTGAGACTAACGACGATACGTAACGGACCAAAGCAGACAATATTTGCTAGCGGTAGACTTGGGCTGTTTTGTATCAAAATGGACAATGTTTGTTAGCGATGGACTTGGGCTGCTACAAGACCTCTCTCTAGTAGACGTATTCTAAAATCATGAGGCTGACGACGATACATAACGAGCTAAAGCGGACAATAATATCTTCTAGCAGTGGACTGGGGTTGTTACAAAACCTCTCTCTAGTAGATGCGTTTTAAGATCATGAGGCAGACGACGATATATGACGAGCTAAAGTGGACAATAATATCTACTGGCAGTGGGCTGGAGTTCTTATAAAACCTCTCTTTAATAGACGTGTTTTAAAATTATGAGGCTGACAATAATACATACCGAGCTAAAGCGAATAATATCTGCTAGTAATAGACTTAGTTATTACATGAACGAGGAAGAGGAAGGAGAGCTAGAAAAAGAAAAAATATATGTTTATTAAAACAAAAACACAGTCCTCATGGAGTCTATGACATTAACC

Coding sequence (CDS)

ATGGGAATGGGTTTCAAGAGAGCGCCCATATTGTTGAGTGTGATGGTTCTTGTTCTTGTCCATATGGCCACAGGGAGACCTGTCCGGACTACTACTTTACCTATTGCTGATTTTGAGACCATGAATATGAGTGGGGAGACTGCGTTTGGGACTCAGCTTCTGAGTTCAGCTCGCCCCAGAGGAGGCAACTATATTGACAACCCACAGGCGGCGAACAAGGCCGCCATCCAAACCTCTGGCTATCACCCATGA
Homology
[Close]
BLAST of CmoCh04G003620 vs. TrEMBL
Match: A0A0A0KXI8_CUCSA (Aconitate hydratase OS=Cucumis sativus GN=Csa_4G017200 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 2.2e-13
Identity = 46/82 (56.10%), Postives = 58/82 (70.73%), Query Frame = 1 

Query: 3  MGFKRAPILLSVMVLVLV-HMATGRPVRTTTLPIADFETMNMSGETAFGTQLLSSARPRG 62
          MG KR  I  SVM+L+L+ +MATGR +  +T   ADFETMNM G+   G++ LSSA PRG
Sbjct: 1  MGLKRESIFFSVMLLLLLSNMATGRVLFHSTSLHADFETMNMDGKNRDGSRFLSSALPRG 60

Query: 63 GNYIDNPQAANKAAIQTSGYHP 84
          GNYI+ P AA KAA+  +GY P
Sbjct: 61 GNYINKPHAAEKAAVGRAGYQP 82

[Close]
BLAST of CmoCh04G003620 vs. NCBI nr
Match: gi|700197974|gb|KGN53132.1| (Aconitate hydratase [Cucumis sativus])

HSP 1 Score: 82.8 bits (203), Expect = 3.1e-13
Identity = 46/82 (56.10%), Postives = 58/82 (70.73%), Query Frame = 1 

Query: 3  MGFKRAPILLSVMVLVLV-HMATGRPVRTTTLPIADFETMNMSGETAFGTQLLSSARPRG 62
          MG KR  I  SVM+L+L+ +MATGR +  +T   ADFETMNM G+   G++ LSSA PRG
Sbjct: 1  MGLKRESIFFSVMLLLLLSNMATGRVLFHSTSLHADFETMNMDGKNRDGSRFLSSALPRG 60

Query: 63 GNYIDNPQAANKAAIQTSGYHP 84
          GNYI+ P AA KAA+  +GY P
Sbjct: 61 GNYINKPHAAEKAAVGRAGYQP 82

The following BLAST results are available for this feature:
BLAST of CmoCh04G003620 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh04G003620 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KXI8_CUCSA2.2e-1356.10Aconitate hydratase OS=Cucumis sativus GN=Csa_4G017200 PE=4 SV=1[more]
BLAST of CmoCh04G003620 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh04G003620 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700197974|gb|KGN53132.1|3.1e-1356.10Aconitate hydratase [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G003620.1CmoCh04G003620.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh04G003620Cucsa.094330Cucumber (Gy14) v1cgycmoB0197
CmoCh04G003620CmaCh04G003450Cucurbita maxima (Rimu)cmacmoB728
CmoCh04G003620Csa4G017200Cucumber (Chinese Long) v2cmocuB700
CmoCh04G003620ClCG07G016740Watermelon (Charleston Gray)cmowcgB671
CmoCh04G003620CSPI04G03860Wild cucumber (PI 183967)cmocpiB708
CmoCh04G003620Cp4.1LG01g03530Cucurbita pepo (Zucchini)cmocpeB673
CmoCh04G003620CsaV3_4G003880Cucumber (Chinese Long) v3cmocucB0828
CmoCh04G003620Cla97C07G143740Watermelon (97103) v2cmowmbB749
CmoCh04G003620Bhi01G002013Wax gourdcmowgoB0845
CmoCh04G003620CsGy4G003740Cucumber (Gy14) v2cgybcmoB516
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh04G003620Cucurbita moschata (Rifu)cmocmoB286
CmoCh04G003620Cucurbita maxima (Rimu)cmacmoB338
CmoCh04G003620Wild cucumber (PI 183967)cmocpiB704
CmoCh04G003620Cucumber (Chinese Long) v2cmocuB694
CmoCh04G003620Melon (DHL92) v3.5.1cmomeB685
CmoCh04G003620Watermelon (Charleston Gray)cmowcgB664
CmoCh04G003620Watermelon (97103) v1cmowmB702
CmoCh04G003620Cucurbita pepo (Zucchini)cmocpeB668
CmoCh04G003620Bottle gourd (USVL1VR-Ls)cmolsiB681
CmoCh04G003620Cucumber (Gy14) v2cgybcmoB394
CmoCh04G003620Melon (DHL92) v3.6.1cmomedB777
CmoCh04G003620Silver-seed gourdcarcmoB0514
CmoCh04G003620Silver-seed gourdcarcmoB1177
CmoCh04G003620Cucumber (Chinese Long) v3cmocucB0823
CmoCh04G003620Watermelon (97103) v2cmowmbB739
CmoCh04G003620Wax gourdcmowgoB0852