Csa4G017200 (gene) Cucumber (Chinese Long) v2

NameCsa4G017200
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr4 : 2354884 .. 2355833 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GAAAAGAGAGAAAAGGTTTTTAGAAAGAGAGTTTGAGGTCAATGGGTTTAAAGAGAGAGTCCATATTTTTTAGTGTTATGCTTCTTCTTCTTCTTTCAAATATGGCAACAGGGAGAGTACTCTTCCATTCTACTTCACTTCATGCAGATTGTAAGTCCCCATATGCCATTCTACTTCTCCTCTCTTTATTTTTAATTACCTCTTCATTGCAAATATTCATTACATTTGGAGTGATTCGGGAGTGAGTTTTTTCATTTTCAAAATCACTTTGAAAACTTGGTTTTAGAAATTTAAAATCAATTTTGATGGATGTGAATATCATTCATGTTTTAAAAGATTAATGGAATATTAATCTAAATAAGTTAACGATCGAGGATGAGAAAGTTGGTGACAGAGAGGAAAAAAAAGACCAATCCCTCTCTATTTCTTACATCTCAATTAATAGAGATTTTGCGATGTAGAATGGTACTATGACATTTAAAAATATAAAATCAATCATTAAATTAATTAATTTGAAATGTTTATCAACATGTTTCAAAGTCATTTCAAAACCAATCACAAAATTAATGGTGGAAAAAACCAAAAATTAAAGAAATGTAATTACATGACTAACATTTTATATATATAAGTAACATTTCCATTATAAGAAAAGAAAGATGATCAAATTAGAGCTTTAGTTGTTCTTGAGTTTTGTGTGTTTTATGGTGTAACAGTTGAGACGATGAATATGGATGGGAAGAATAGGGATGGGAGTCGTTTTCTGAGTTCGGCTCTGCCTCGAGGTGGCAACTATATTAACAAACCCCATGCAGCAGAGAAGGCTGCGGTTGGACGCGCCGGCTACCAACCATGACGGCTATGGAAAACTGGTTATGAGAGAGTGTAGTACTTCATGATGATCATATATAATATAAATACACTGTGGCTGAAGTATCATGAATAAAAACATG

mRNA sequence

ATGGGTTTAAAGAGAGAGTCCATATTTTTTAGTGTTATGCTTCTTCTTCTTCTTTCAAATATGGCAACAGGGAGAGTACTCTTCCATTCTACTTCACTTCATGCAGATTTTGAGACGATGAATATGGATGGGAAGAATAGGGATGGGAGTCGTTTTCTGAGTTCGGCTCTGCCTCGAGGTGGCAACTATATTAACAAACCCCATGCAGCAGAGAAGGCTGCGGTTGGACGCGCCGGCTACCAACCATGA

Coding sequence (CDS)

ATGGGTTTAAAGAGAGAGTCCATATTTTTTAGTGTTATGCTTCTTCTTCTTCTTTCAAATATGGCAACAGGGAGAGTACTCTTCCATTCTACTTCACTTCATGCAGATTTTGAGACGATGAATATGGATGGGAAGAATAGGGATGGGAGTCGTTTTCTGAGTTCGGCTCTGCCTCGAGGTGGCAACTATATTAACAAACCCCATGCAGCAGAGAAGGCTGCGGTTGGACGCGCCGGCTACCAACCATGA

Protein sequence

MGLKRESIFFSVMLLLLLSNMATGRVLFHSTSLHADFETMNMDGKNRDGSRFLSSALPRGGNYINKPHAAEKAAVGRAGYQP*
BLAST of Csa4G017200 vs. TrEMBL
Match: A0A0A0KXI8_CUCSA (Aconitate hydratase OS=Cucumis sativus GN=Csa_4G017200 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 1.9e-38
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 1

Query: 1  MGLKRESIFFSVMLLLLLSNMATGRVLFHSTSLHADFETMNMDGKNRDGSRFLSSALPRG 60
          MGLKRESIFFSVMLLLLLSNMATGRVLFHSTSLHADFETMNMDGKNRDGSRFLSSALPRG
Sbjct: 1  MGLKRESIFFSVMLLLLLSNMATGRVLFHSTSLHADFETMNMDGKNRDGSRFLSSALPRG 60

Query: 61 GNYINKPHAAEKAAVGRAGYQP 83
          GNYINKPHAAEKAAVGRAGYQP
Sbjct: 61 GNYINKPHAAEKAAVGRAGYQP 82

BLAST of Csa4G017200 vs. NCBI nr
Match: gi|700197974|gb|KGN53132.1| (Aconitate hydratase [Cucumis sativus])

HSP 1 Score: 166.0 bits (419), Expect = 2.8e-38
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 1

Query: 1  MGLKRESIFFSVMLLLLLSNMATGRVLFHSTSLHADFETMNMDGKNRDGSRFLSSALPRG 60
          MGLKRESIFFSVMLLLLLSNMATGRVLFHSTSLHADFETMNMDGKNRDGSRFLSSALPRG
Sbjct: 1  MGLKRESIFFSVMLLLLLSNMATGRVLFHSTSLHADFETMNMDGKNRDGSRFLSSALPRG 60

Query: 61 GNYINKPHAAEKAAVGRAGYQP 83
          GNYINKPHAAEKAAVGRAGYQP
Sbjct: 61 GNYINKPHAAEKAAVGRAGYQP 82

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0KXI8_CUCSA1.9e-38100.00Aconitate hydratase OS=Cucumis sativus GN=Csa_4G017200 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|700197974|gb|KGN53132.1|2.8e-38100.00Aconitate hydratase [Cucumis sativus][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU134182cucumber EST collection version 3.0transcribed_cluster

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa4G017200.1Csa4G017200.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU134182CU134182transcribed_cluster


The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa4G017200Melon (DHL92) v3.5.1cumeB312
Csa4G017200Watermelon (97103) v1cuwmB312
Csa4G017200Bottle gourd (USVL1VR-Ls)culsiB303
Csa4G017200Melon (DHL92) v3.6.1cumedB297