CSPI04G03860 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI04G03860
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Aconitate hydratase
Location	Chr4 : 2405930 .. 2407215 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGAAAAGAGAGAAAAGGTTTATAGAAAGAGAGTTTGAGGTCAATGGGTTTAAAGAGAGAGTCCATATTTTTTAGTGTTATGCTTCTTCTTCTTCTTTCAAATATGGCAACAGGGAGAGTACTCTTCCATTCTACTTCACTTCATGCAGATTGTAAGTCCCCATATGCCATTCTACTTCTCCTCTCTTTATTTTTAATTACCTCTTCATTGCAAATATTCATTACATTTGGAGTGATTCGGGAGTGAGTTTTTTCATTTTCAAAATCACTTTGAAAACTTGGTTTTAGAAATTTAAAATCAATTTTGATGGATGTGAATATCATTCATGTTTTAAAAGATTAATGGAATATTAATCTAAATAAGTTAACGATCGAGGATGAGAAAGTTGGTGACAGAGAGGAAAAAAAAGACCAATCCCTCTCTATTTCTTACATCTCAATTAATAGAGATTTTGCGATGTAGAATGGTACTATGACATTTAAAAATATAAAATCAATCATTAAATTAATTAATTTGAAATGTTTATCAACATGTTTCAAAGTCATTTTTAAACCATTCACAAAATTAATGGTGGAAAAAACCAAAAAGTAAAGAAATGTAATTACATGACTAACATTTTATATATATAAGTAACATTTCCATTATAAGAAAAGAAAGATGATCAAATTAGAGCTTTAGTTGTTCTTGAGTTTTGTGTGTTTTATGGTGTAACAGTTGAGACGATCAATATGGATGGGAAGAATAGGGATGGGAGTCGTTTTCTGAGTTCGGCTCTGCCTCGAGGTGGCAACTATATTAACAAACCCCATGCAGCAGAGAAGGCTGCGGTTGGACGCGCCGGCTACCAACCATGACGGCTATGGAAAATTGGTTATGAGAGAGTGTAGTACTTCATGATGATCATATATAATATAAATACACTGTGGCTGAAGTATCATGAATAAAAACATGGGTTTTAAGTCAACAACGTAAGCATTTTTATTTGTGAATGTTGTCTCAAATTAGTGTTTGACATGATGATATATACCATGAAACGTTTTGTAGTAGAATTATATTTTTGAAGTGATGCTGTTGATTTGGAGAAATTGGGCCAAAGTTATAGACAAAATATGGAAAAGTTGGGAGAACAGTGAAAGAGTTTGGACTTCAAACTCTAAGAAGCAAAGCATTGATGTATGAAGTATGGTAATATGATGCTTATTATTCAAGAAAAAAGTAATTCCGTGTGGAAGACCAAATACAAAGGAAATTAAGAATCATAACAATGTCGATCATAACAGACCGAG

mRNA sequence

ATGGGTTTAAAGAGAGAGTCCATATTTTTTAGTGTTATGCTTCTTCTTCTTCTTTCAAATATGGCAACAGGGAGAGTACTCTTCCATTCTACTTCACTTCATGCAGATTTTGAGACGATCAATATGGATGGGAAGAATAGGGATGGGAGTCGTTTTCTGAGTTCGGCTCTGCCTCGAGGTGGCAACTATATTAACAAACCCCATGCAGCAGAGAAGGCTGCGGTTGGACGCGCCGGCTACCAACCATGA

Coding sequence (CDS)

ATGGGTTTAAAGAGAGAGTCCATATTTTTTAGTGTTATGCTTCTTCTTCTTCTTTCAAATATGGCAACAGGGAGAGTACTCTTCCATTCTACTTCACTTCATGCAGATTTTGAGACGATCAATATGGATGGGAAGAATAGGGATGGGAGTCGTTTTCTGAGTTCGGCTCTGCCTCGAGGTGGCAACTATATTAACAAACCCCATGCAGCAGAGAAGGCTGCGGTTGGACGCGCCGGCTACCAACCATGA

Homology

[Close]

BLAST of CSPI04G03860 vs. TrEMBL
Match: A0A0A0KXI8_CUCSA (Aconitate hydratase OS=Cucumis sativus GN=Csa_4G017200 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 4.8e-37
Identity = 81/82 (98.78%), Postives = 82/82 (100.00%), Query Frame = 1


Query: 1  MGLKRESIFFSVMLLLLLSNMATGRVLFHSTSLHADFETINMDGKNRDGSRFLSSALPRG 60
          MGLKRESIFFSVMLLLLLSNMATGRVLFHSTSLHADFET+NMDGKNRDGSRFLSSALPRG
Sbjct: 1  MGLKRESIFFSVMLLLLLSNMATGRVLFHSTSLHADFETMNMDGKNRDGSRFLSSALPRG 60

Query: 61 GNYINKPHAAEKAAVGRAGYQP 83
          GNYINKPHAAEKAAVGRAGYQP
Sbjct: 61 GNYINKPHAAEKAAVGRAGYQP 82

[Close]

BLAST of CSPI04G03860 vs. NCBI nr
Match: gi|700197974|gb|KGN53132.1| (Aconitate hydratase [Cucumis sativus])

HSP 1 Score: 161.4 bits (407), Expect = 6.8e-37
Identity = 81/82 (98.78%), Postives = 82/82 (100.00%), Query Frame = 1


Query: 1  MGLKRESIFFSVMLLLLLSNMATGRVLFHSTSLHADFETINMDGKNRDGSRFLSSALPRG 60
          MGLKRESIFFSVMLLLLLSNMATGRVLFHSTSLHADFET+NMDGKNRDGSRFLSSALPRG
Sbjct: 1  MGLKRESIFFSVMLLLLLSNMATGRVLFHSTSLHADFETMNMDGKNRDGSRFLSSALPRG 60

Query: 61 GNYINKPHAAEKAAVGRAGYQP 83
          GNYINKPHAAEKAAVGRAGYQP
Sbjct: 61 GNYINKPHAAEKAAVGRAGYQP 82

The following BLAST results are available for this feature:

BLAST of CSPI04G03860 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI04G03860 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KXI8_CUCSA	4.8e-37	98.78	Aconitate hydratase OS=Cucumis sativus GN=Csa_4G017200 PE=4 SV=1	[more]

BLAST of CSPI04G03860 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI04G03860 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700197974\|gb\|KGN53132.1\|	6.8e-37	98.78	Aconitate hydratase [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G03860.1	CSPI04G03860.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI04G03860	Csa4G017200	Cucumber (Chinese Long) v2	cpicuB182
CSPI04G03860	ClCG07G016740	Watermelon (Charleston Gray)	cpiwcgB336
CSPI04G03860	CsaV3_4G003880	Cucumber (Chinese Long) v3	cpicucB213
CSPI04G03860	Cla97C07G143740	Watermelon (97103) v2	cpiwmbB326
CSPI04G03860	Bhi01G002013	Wax gourd	cpiwgoB370
CSPI04G03860	Cucsa.094330	Cucumber (Gy14) v1	cgycpiB103
CSPI04G03860	CmaCh04G003450	Cucurbita maxima (Rimu)	cmacpiB716
CSPI04G03860	CmoCh04G003620	Cucurbita moschata (Rifu)	cmocpiB708
CSPI04G03860	Cp4.1LG01g03530	Cucurbita pepo (Zucchini)	cpecpiB398
CSPI04G03860	CsGy4G003740	Cucumber (Gy14) v2	cgybcpiB168

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI04G03860	Melon (DHL92) v3.5.1	cpimeB310
CSPI04G03860	Watermelon (97103) v1	cpiwmB315
CSPI04G03860	Bottle gourd (USVL1VR-Ls)	cpilsiB303
CSPI04G03860	Melon (DHL92) v3.6.1	cpimedB301