CsaV3_4G003880 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G003880
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionAconitate hydratase
Locationchr4 : 2381938 .. 2383137 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GAAAGTTTGAAACTACGGCATAGAGTTCATCGAAAAGAGAGAAAAGGTTTTTAGAAAGAGAGTTTGAGGTCAATGGGTTTAAAGAGAGAGTCCATATTTTTTAGTGTTATGCTTCTTCTTCTTCTTTCAAATATGGCAACAGGGAGAGTACTCTTCCATTCTACTTCACTTCATGCAGATTGTAAGTCCCCATATGCCATTCTACTTCTCCTCTCTTTATTTTTAATTACCTCTTCATTGCAAATATTCATTACATTTGGAGTGATTCGGGAGTGAGTTTTTTCATTTTCAAAATCACTTTGAAAACTTGGTTTTAGAAATTTAAAATCAATTTTGATGGATGTGAATATCATTCATGTTTTAAAAGATTAATGGAATATTAATCTAAATAAGTTAACGATCGAGGATGAGAAAGTTGGTGACAGAGAGGAAAAAAAAGACCAATCCCTCTCTATTTCTTACATCTCAATTAATAGAGATTTTGCGATGTAGAATGGTACTATGACATTTAAAAATATAAAATCAATCATTAAATTAATTAATTTGAAATGTTTATCAACATGTTTCAAAGTCATTTCAAAACCAATCACAAAATTAATGGTGGAAAAAACCAAAAATTAAAGAAATGTAATTACATGACTAACATTTTATATATATAAGTAACATTTCCATTATAAGAAAAGAAAGATGATCAAATTAGAGCTTTAGTTGTTCTTGAGTTTTGTGTGTTTTATGGTGTAACAGTTGAGACGATGAATATGGATGGGAAGAATAGGGATGGGAGTCGTTTTCTGAGTTCGGCTCTGCCTCGAGGTGGCAACTATATTAACAAACCCCATGCAGCAGAGAAGGCTGCGGTTGGACGCGCCGGCTACCAACCATGACGGCTATGGAAAACTGGTTATGAGAGAGTGTAGTACTTCATGATGATCATATATAATATAAATACACTGTGGCTGAAGTATCATGAATAAAAACATGGGTTTTAAGTCAACAACGTAAGCATTTTTATTTGTGAATGTTGTCTCAAATTAGTGTTTGACATGATGATATATACCATGAAACGTTTTGTAGTAGAATTATATTTTTGAAGTGATGATGTTGTTGATTTGGAGAAATTGGGCCAAAGTTATAGACAAAATATGGAAAAGTTGGGAGAACAGTAAAAGAGTTTGGACTTCAAACTCTAAGAAGCAAAGC

mRNA sequence

ATGGGTTTAAAGAGAGAGTCCATATTTTTTAGTGTTATGCTTCTTCTTCTTCTTTCAAATATGGCAACAGGGAGAGTACTCTTCCATTCTACTTCACTTCATGCAGATTTTGAGACGATGAATATGGATGGGAAGAATAGGGATGGGAGTCGTTTTCTGAGTTCGGCTCTGCCTCGAGGTGGCAACTATATTAACAAACCCCATGCAGCAGAGAAGGCTGCGGTTGGACGCGCCGGCTACCAACCATGA

Coding sequence (CDS)

ATGGGTTTAAAGAGAGAGTCCATATTTTTTAGTGTTATGCTTCTTCTTCTTCTTTCAAATATGGCAACAGGGAGAGTACTCTTCCATTCTACTTCACTTCATGCAGATTTTGAGACGATGAATATGGATGGGAAGAATAGGGATGGGAGTCGTTTTCTGAGTTCGGCTCTGCCTCGAGGTGGCAACTATATTAACAAACCCCATGCAGCAGAGAAGGCTGCGGTTGGACGCGCCGGCTACCAACCATGA

Protein sequence

MGLKRESIFFSVMLLLLLSNMATGRVLFHSTSLHADFETMNMDGKNRDGSRFLSSALPRGGNYINKPHAAEKAAVGRAGYQP
Homology
[Close]
BLAST of CsaV3_4G003880 vs. NCBI nr
Match: KGN53132.1 (Aconitate hydratase [Cucumis sativus])

HSP 1 Score: 162.2 bits (409), Expect = 7.8e-37
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0 

Query: 1  MGLKRESIFFSVMLLLLLSNMATGRVLFHSTSLHADFETMNMDGKNRDGSRFLSSALPRG 60
          MGLKRESIFFSVMLLLLLSNMATGRVLFHSTSLHADFETMNMDGKNRDGSRFLSSALPRG
Sbjct: 1  MGLKRESIFFSVMLLLLLSNMATGRVLFHSTSLHADFETMNMDGKNRDGSRFLSSALPRG 60

Query: 61 GNYINKPHAAEKAAVGRAGYQP 83
          GNYINKPHAAEKAAVGRAGYQP
Sbjct: 61 GNYINKPHAAEKAAVGRAGYQP 82

[Close]
BLAST of CsaV3_4G003880 vs. TrEMBL
Match: tr|A0A0A0KXI8|A0A0A0KXI8_CUCSA (Aconitate hydratase OS=Cucumis sativus OX=3659 GN=Csa_4G017200 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 5.2e-37
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0 

Query: 1  MGLKRESIFFSVMLLLLLSNMATGRVLFHSTSLHADFETMNMDGKNRDGSRFLSSALPRG 60
          MGLKRESIFFSVMLLLLLSNMATGRVLFHSTSLHADFETMNMDGKNRDGSRFLSSALPRG
Sbjct: 1  MGLKRESIFFSVMLLLLLSNMATGRVLFHSTSLHADFETMNMDGKNRDGSRFLSSALPRG 60

Query: 61 GNYINKPHAAEKAAVGRAGYQP 83
          GNYINKPHAAEKAAVGRAGYQP
Sbjct: 61 GNYINKPHAAEKAAVGRAGYQP 82

The following BLAST results are available for this feature:
BLAST of CsaV3_4G003880 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN53132.17.8e-37100.00Aconitate hydratase [Cucumis sativus][more]
BLAST of CsaV3_4G003880 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G003880 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G003880 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KXI8|A0A0A0KXI8_CUCSA5.2e-37100.00Aconitate hydratase OS=Cucumis sativus OX=3659 GN=Csa_4G017200 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G003880.1CsaV3_4G003880.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_4G003880CSPI04G03860Wild cucumber (PI 183967)cpicucB213
CsaV3_4G003880Cucsa.094330Cucumber (Gy14) v1cgycucB102
CsaV3_4G003880CmaCh04G003450Cucurbita maxima (Rimu)cmacucB0842
CsaV3_4G003880CmoCh04G003620Cucurbita moschata (Rifu)cmocucB0828
CsaV3_4G003880Cp4.1LG01g03530Cucurbita pepo (Zucchini)cpecucB0498
CsaV3_4G003880CsGy4G003740Cucumber (Gy14) v2cgybcucB171
CsaV3_4G003880ClCG07G016740Watermelon (Charleston Gray)cucwcgB336
CsaV3_4G003880Cla97C07G143740Watermelon (97103) v2cucwmbB324
CsaV3_4G003880Bhi01G002013Wax gourdcucwgoB373
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_4G003880Bottle gourd (USVL1VR-Ls)cuclsiB322
CsaV3_4G003880Melon (DHL92) v3.5.1cucmeB315
CsaV3_4G003880Melon (DHL92) v3.6.1cucmedB307
CsaV3_4G003880Watermelon (97103) v1cucwmB324