CmoCh04G003620.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G003620.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Aconitate hydratase
Location	Cmo_Chr04 : 1757644 .. 1759003 (-)
Sequence length	1273

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAGACATTAGTGCCTCTGTTCATTGGTAATCTCAAGCAAAAAGGAAGCTGCTTTGGTGCTCTATAAATACCCATAACCCAATGGCTAAGAATTCATCCCCAAAGAGAGTTTGATGGGAATGGGTTTCAAGAGAGCGCCCATATTGTTGAGTGTGATGGTTCTTGTTCTTGTCCATATGGCCACAGGGAGACCTGTCCGGACTACTACTTTACCTATTGCTGATTGTAAGCTCTCATATGCCTTTTGCTTTCATCTCTTTAATTCTAACTTTTATTGTGTTTTATGAGGGAATTTGTGTTTTTGTTGCGTAGTTGAGACCATGAATATGAGTGGGGAGACTGCGTTTGGGACTCAGCTTCTGAGTTCAGCTCGCCCCAGAGGAGGCAACTATATTGACAACCCACAGGCGGCGAACAAGGCCGCCATCCAAACCTCTGGCTATCACCCATGATGGCTGTGATGTTCCTATGCTGGCTGAAGTGTTATGAACCAATAAGAGCTTGAGTTTTGTTGTGATGTTTTTTTTTTTGTAAGTGTTTTGATCCTATGTTTTCTAGTAATTGTTGTTTTTGGAATCTCGAGTGTAACCGTCTAAGTCCACTACTAGTAGATATTGTTTGCTTTTCTCTGTTACATATTTGTGTTATTTTTAAAACGTTTTTATTGTGGAGAGGGTTTAGCCTTACTCCAACCAGTGTCTTGTATTGTCTGTTCACTAATTGTGAGATCTCATATCGGTTGAAGAGATGAACGAAGCATTCCTTATAAGGGTGTGGAAACGAAGCATTCCTTATAAGTGTATGAAAATCTATCTTAGTATACATGTTTTAAAACTGTGAGACTAACGACGATACGTAACGGACCAAAGCAGACAATATTTGCTAGCGGTAGACTTGGGCTGTTTTGTATCAAAATGGACAATGTTTGTTAGCGATGGACTTGGGCTGCTACAAGACCTCTCTCTAGTAGACGTATTCTAAAATCATGAGGCTGACGACGATACATAACGAGCTAAAGCGGACAATAATATCTTCTAGCAGTGGACTGGGGTTGTTACAAAACCTCTCTCTAGTAGATGCGTTTTAAGATCATGAGGCAGACGACGATATATGACGAGCTAAAGTGGACAATAATATCTACTGGCAGTGGGCTGGAGTTCTTATAAAACCTCTCTTTAATAGACGTGTTTTAAAATTATGAGGCTGACAATAATACATACCGAGCTAAAGCGAATAATATCTGCTAGTAATAGACTTAGTTATTACATGAACGAGGAAGAGGAAGGAGAGCTAGAAAAAGAAAAAATATATGTTTATTAAAACAAAAACACAGTCCTCATGGAGTCTATGACATTAACC

mRNA sequence

AAAAGACATTAGTGCCTCTGTTCATTGGTAATCTCAAGCAAAAAGGAAGCTGCTTTGGTGCTCTATAAATACCCATAACCCAATGGCTAAGAATTCATCCCCAAAGAGAGTTTGATGGGAATGGGTTTCAAGAGAGCGCCCATATTGTTGAGTGTGATGGTTCTTGTTCTTGTCCATATGGCCACAGGGAGACCTGTCCGGACTACTACTTTACCTATTGCTGATTTTGAGACCATGAATATGAGTGGGGAGACTGCGTTTGGGACTCAGCTTCTGAGTTCAGCTCGCCCCAGAGGAGGCAACTATATTGACAACCCACAGGCGGCGAACAAGGCCGCCATCCAAACCTCTGGCTATCACCCATGATGGCTGTGATGTTCCTATGCTGGCTGAAGTGTTATGAACCAATAAGAGCTTGAGTTTTGTTGTGATGTTTTTTTTTTTGTAAGTGTTTTGATCCTATGTTTTCTAGTAATTGTTGTTTTTGGAATCTCGAGTGTAACCGTCTAAGTCCACTACTAGTAGATATTGTTTGCTTTTCTCTGTTACATATTTGTGTTATTTTTAAAACGTTTTTATTGTGGAGAGGGTTTAGCCTTACTCCAACCAGTGTCTTGTATTGTCTGTTCACTAATTGTGAGATCTCATATCGGTTGAAGAGATGAACGAAGCATTCCTTATAAGGGTGTGGAAACGAAGCATTCCTTATAAGTGTATGAAAATCTATCTTAGTATACATGTTTTAAAACTGTGAGACTAACGACGATACGTAACGGACCAAAGCAGACAATATTTGCTAGCGGTAGACTTGGGCTGTTTTGTATCAAAATGGACAATGTTTGTTAGCGATGGACTTGGGCTGCTACAAGACCTCTCTCTAGTAGACGTATTCTAAAATCATGAGGCTGACGACGATACATAACGAGCTAAAGCGGACAATAATATCTTCTAGCAGTGGACTGGGGTTGTTACAAAACCTCTCTCTAGTAGATGCGTTTTAAGATCATGAGGCAGACGACGATATATGACGAGCTAAAGTGGACAATAATATCTACTGGCAGTGGGCTGGAGTTCTTATAAAACCTCTCTTTAATAGACGTGTTTTAAAATTATGAGGCTGACAATAATACATACCGAGCTAAAGCGAATAATATCTGCTAGTAATAGACTTAGTTATTACATGAACGAGGAAGAGGAAGGAGAGCTAGAAAAAGAAAAAATATATGTTTATTAAAACAAAAACACAGTCCTCATGGAGTCTATGACATTAACC

Coding sequence (CDS)

ATGGGAATGGGTTTCAAGAGAGCGCCCATATTGTTGAGTGTGATGGTTCTTGTTCTTGTCCATATGGCCACAGGGAGACCTGTCCGGACTACTACTTTACCTATTGCTGATTTTGAGACCATGAATATGAGTGGGGAGACTGCGTTTGGGACTCAGCTTCTGAGTTCAGCTCGCCCCAGAGGAGGCAACTATATTGACAACCCACAGGCGGCGAACAAGGCCGCCATCCAAACCTCTGGCTATCACCCATGA

Homology

[Close]

BLAST of CmoCh04G003620.1 vs. TrEMBL
Match: A0A0A0KXI8_CUCSA (Aconitate hydratase OS=Cucumis sativus GN=Csa_4G017200 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 2.2e-13
Identity = 46/82 (56.10%), Postives = 58/82 (70.73%), Query Frame = 1


Query: 3  MGFKRAPILLSVMVLVLV-HMATGRPVRTTTLPIADFETMNMSGETAFGTQLLSSARPRG 62
          MG KR  I  SVM+L+L+ +MATGR +  +T   ADFETMNM G+   G++ LSSA PRG
Sbjct: 1  MGLKRESIFFSVMLLLLLSNMATGRVLFHSTSLHADFETMNMDGKNRDGSRFLSSALPRG 60

Query: 63 GNYIDNPQAANKAAIQTSGYHP 84
          GNYI+ P AA KAA+  +GY P
Sbjct: 61 GNYINKPHAAEKAAVGRAGYQP 82

[Close]

BLAST of CmoCh04G003620.1 vs. NCBI nr
Match: gi|700197974|gb|KGN53132.1| (Aconitate hydratase [Cucumis sativus])

HSP 1 Score: 82.8 bits (203), Expect = 3.1e-13
Identity = 46/82 (56.10%), Postives = 58/82 (70.73%), Query Frame = 1


Query: 3  MGFKRAPILLSVMVLVLV-HMATGRPVRTTTLPIADFETMNMSGETAFGTQLLSSARPRG 62
          MG KR  I  SVM+L+L+ +MATGR +  +T   ADFETMNM G+   G++ LSSA PRG
Sbjct: 1  MGLKRESIFFSVMLLLLLSNMATGRVLFHSTSLHADFETMNMDGKNRDGSRFLSSALPRG 60

Query: 63 GNYIDNPQAANKAAIQTSGYHP 84
          GNYI+ P AA KAA+  +GY P
Sbjct: 61 GNYINKPHAAEKAAVGRAGYQP 82

The following BLAST results are available for this feature:

BLAST of CmoCh04G003620.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh04G003620.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KXI8_CUCSA	2.2e-13	56.10	Aconitate hydratase OS=Cucumis sativus GN=Csa_4G017200 PE=4 SV=1	[more]

BLAST of CmoCh04G003620.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh04G003620.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700197974\|gb\|KGN53132.1\|	3.1e-13	56.10	Aconitate hydratase [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh04G003620	CmoCh04G003620	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh04G003620.1	CmoCh04G003620.1-protein	polypeptide

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh04G003620.1.three_prime_UTR.1	CmoCh04G003620.1.three_prime_UTR.1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh04G003620.1.CDS.2	CmoCh04G003620.1.CDS.2	CDS
CmoCh04G003620.1.CDS.1	CmoCh04G003620.1.CDS.1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh04G003620.1.five_prime_UTR.1	CmoCh04G003620.1.five_prime_UTR.1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh04G003620.1.exon.2	CmoCh04G003620.1.exon.2	exon
CmoCh04G003620.1.exon.1	CmoCh04G003620.1.exon.1	exon