Cp4.1LG01g03530.1 (mRNA) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG01g03530.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Aconitate hydratase
Location	Cp4.1LG01 : 1702572 .. 1703581 (-)
Sequence length	919

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAAAAAAAAAAAAAAAAAAAAAACATCATTAAAAACATGATTAAAAAGACATTATAGTGCCTCTGTTCATTGGTAATCTCAAGTAAAAAGGAAGCTGCTTTGGTGCTCTATAAATACACATAACCCAATGGCTCAGAATTCATCCCCAAAGAGAGCTTGGTGAGAATGGGTTTCAAGAGAGCGCCCATATGGTTGAGTGTGATGGTTCTTGTTCTTGTCCTTGTCCTTGTCCATATGGCTACAGGGAGACCCGTCCGGACTACTACTTCACCTATCGCTGATTGTAAGCTCTCATATGCCTTTTGCTTTCATCTCTTTAATTCTAACTAACTTTTATTGTGTTTTATGAGGGAATTTGTGGTTTTGTTGTGTAGTTGAGACCATGAATATGAGTGGGGAGACTGCGTTTGGGACTCAGCTTCTGAGTTCAGCTCGCCCCAGAGGAGGCAACTATATTGACAACCCACAGGCGGCGAACAAGGCCGCCATCCAAAGCTCTGGCTATCACCCATGATGGCTGTGTCAAATTTGAGTAACTGCAGTGATGTTCCTATGTTGGCTGAAGTGTTATGAACAAATAAGAGCTTGAGTTTTGTTGTGATGTTTTTTTCTAACTGTTTTGATTATGTGTTTTCTAGTCAGTGTTCTTTTTGGAATCTCGAGTTTAACGGTCTAAGTCTACTACTACTACATATTGGTTGCTTTTGTCTGTTACATATTTATGTTAACTTCACTATTTAAAAGGTTTTTACTATGGAGAGGGTCTAGCCCTACTCTAACTAGTGTCTTGCATTGTCTGTTGACTAATTGTGAGATCTTATATTGGTTGGAAAGAGAAATGAAATTTCTTATAAGGGCTTGGAAACAAAACATTTCTTATAAGAGTGTGAAAATCTCTTCATAGTATATGTGTTTTAAAACCGTGAGGCTAATGATGATACGTAACTGACCAAAGTGGACAATATTTGCTAGCGGTAGACTTGAGCTGTTTTATATCAATGTGGAC

mRNA sequence

AAAAAAAAAAAAAAAAAAAAAAAAAAACATCATTAAAAACATGATTAAAAAGACATTATAGTGCCTCTGTTCATTGGTAATCTCAAGTAAAAAGGAAGCTGCTTTGGTGCTCTATAAATACACATAACCCAATGGCTCAGAATTCATCCCCAAAGAGAGCTTGGTGAGAATGGGTTTCAAGAGAGCGCCCATATGGTTGAGTGTGATGGTTCTTGTTCTTGTCCTTGTCCTTGTCCATATGGCTACAGGGAGACCCGTCCGGACTACTACTTCACCTATCGCTGATTTTGAGACCATGAATATGAGTGGGGAGACTGCGTTTGGGACTCAGCTTCTGAGTTCAGCTCGCCCCAGAGGAGGCAACTATATTGACAACCCACAGGCGGCGAACAAGGCCGCCATCCAAAGCTCTGGCTATCACCCATGATGGCTGTGTCAAATTTGAGTAACTGCAGTGATGTTCCTATGTTGGCTGAAGTGTTATGAACAAATAAGAGCTTGAGTTTTGTTGTGATGTTTTTTTCTAACTGTTTTGATTATGTGTTTTCTAGTCAGTGTTCTTTTTGGAATCTCGAGTTTAACGGTCTAAGTCTACTACTACTACATATTGGTTGCTTTTGTCTGTTACATATTTATGTTAACTTCACTATTTAAAAGGTTTTTACTATGGAGAGGGTCTAGCCCTACTCTAACTAGTGTCTTGCATTGTCTGTTGACTAATTGTGAGATCTTATATTGGTTGGAAAGAGAAATGAAATTTCTTATAAGGGCTTGGAAACAAAACATTTCTTATAAGAGTGTGAAAATCTCTTCATAGTATATGTGTTTTAAAACCGTGAGGCTAATGATGATACGTAACTGACCAAAGTGGACAATATTTGCTAGCGGTAGACTTGAGCTGTTTTATATCAATGTGGAC

Coding sequence (CDS)

ATGGGTTTCAAGAGAGCGCCCATATGGTTGAGTGTGATGGTTCTTGTTCTTGTCCTTGTCCTTGTCCATATGGCTACAGGGAGACCCGTCCGGACTACTACTTCACCTATCGCTGATTTTGAGACCATGAATATGAGTGGGGAGACTGCGTTTGGGACTCAGCTTCTGAGTTCAGCTCGCCCCAGAGGAGGCAACTATATTGACAACCCACAGGCGGCGAACAAGGCCGCCATCCAAAGCTCTGGCTATCACCCATGA

Protein sequence

MGFKRAPIWLSVMVLVLVLVLVHMATGRPVRTTTSPIADFETMNMSGETAFGTQLLSSARPRGGNYIDNPQAANKAAIQSSGYHP

Homology

[Close]

BLAST of Cp4.1LG01g03530.1 vs. TrEMBL
Match: A0A0A0KXI8_CUCSA (Aconitate hydratase OS=Cucumis sativus GN=Csa_4G017200 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 5.8e-14
Identity = 48/85 (56.47%), Postives = 60/85 (70.59%), Query Frame = 1


Query: 1  MGFKRAPIWLSVMVLVLVLVLVHMATGRPVRTTTSPIADFETMNMSGETAFGTQLLSSAR 60
          MG KR  I+ SVM+L+L   L +MATGR +  +TS  ADFETMNM G+   G++ LSSA 
Sbjct: 1  MGLKRESIFFSVMLLLL---LSNMATGRVLFHSTSLHADFETMNMDGKNRDGSRFLSSAL 60

Query: 61 PRGGNYIDNPQAANKAAIQSSGYHP 86
          PRGGNYI+ P AA KAA+  +GY P
Sbjct: 61 PRGGNYINKPHAAEKAAVGRAGYQP 82

[Close]

BLAST of Cp4.1LG01g03530.1 vs. NCBI nr
Match: gi|700197974|gb|KGN53132.1| (Aconitate hydratase [Cucumis sativus])

HSP 1 Score: 84.7 bits (208), Expect = 8.3e-14
Identity = 48/85 (56.47%), Postives = 60/85 (70.59%), Query Frame = 1


Query: 1  MGFKRAPIWLSVMVLVLVLVLVHMATGRPVRTTTSPIADFETMNMSGETAFGTQLLSSAR 60
          MG KR  I+ SVM+L+L   L +MATGR +  +TS  ADFETMNM G+   G++ LSSA 
Sbjct: 1  MGLKRESIFFSVMLLLL---LSNMATGRVLFHSTSLHADFETMNMDGKNRDGSRFLSSAL 60

Query: 61 PRGGNYIDNPQAANKAAIQSSGYHP 86
          PRGGNYI+ P AA KAA+  +GY P
Sbjct: 61 PRGGNYINKPHAAEKAAVGRAGYQP 82

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g03530.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG01g03530.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KXI8_CUCSA	5.8e-14	56.47	Aconitate hydratase OS=Cucumis sativus GN=Csa_4G017200 PE=4 SV=1	[more]

BLAST of Cp4.1LG01g03530.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG01g03530.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700197974\|gb\|KGN53132.1\|	8.3e-14	56.47	Aconitate hydratase [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG01g03530	Cp4.1LG01g03530	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG01g03530.1:five_prime_utr:001	Cp4.1LG01g03530.1:five_prime_utr:001	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG01g03530.1:cds:001	Cp4.1LG01g03530.1:cds:001	CDS
Cp4.1LG01g03530.1:cds:002	Cp4.1LG01g03530.1:cds:002	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG01g03530.1:three_prime_utr:001	Cp4.1LG01g03530.1:three_prime_utr:001	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG01g03530.1	Cp4.1LG01g03530.1-protein	polypeptide