Cp4.1LG01g01990 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g01990
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
Description40S ribosomal protein S16
LocationCp4.1LG01 : 2659775 .. 2660674 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGCTTCAATCGAGTCTGTGCAATGCTTCGGCCGGAAGAAGACGGCAGTCGCTGTGACGTACTGCAAGCGCGGCCGAGGATTAATCAAGATCAATGGCTGCCCAATTGAGCTTGTCGAGCCAGAGATCTTGCGCTTCAAGGCTTACGAACCCATCCTCCTCCTCGGCCGCCATCGTTTCTCCGGCGTCGACATGCGAATCAGAGTCAAAGGCGGAGGCCACACCTCGCAGATCTATGCTATCCGTCAGAGCATTGCCAAGGCTCTTGTCGCCTTCTACCAGAAGTACGTCGACGAACAGAGCAAGAAGGAGATTAAGGACATTCTCGTCCGCTACGATCGGACTTTGCTCGTCGCCGATCCCAGACGTTGTGAGCCGAAGAAGTTTGGTGGTCGTGGAGCTCGTGCTAGGTTTCAGAAATCATATCGTTGATCTGAGATTTTTAGGCATCTATGGCAGAGAGTCGCTTGTTGGTAACGGTTATTTTTGGGATTTACGTTCTAATTACCTTCGGAGACATGAAATTTTGGATCTGTTTATGATTGTAGTATATGATAATTTGACATTGAGACTTGAGTTTTCTGATTCCTGAGATAATTGCAGCCAAAAGGCATTTTTGAATCGTCAGTTTTTTCTTCCAATCGTTAGTTGTTCATGTTAGACACAGAACACCCCTCATTCCTACCCTGCATCTCTTATGACATAAGAGCTACTTTACAGGTCGAAGACTGTCCTCACAAACCAGCAATTGGGTCTATTTACATACCTTTTGCTCATCCCAATTGAAGTTTTGAAGAGGTCATCCTATTTAGAACAATTTCAGAGTCAGCCTGCTGATGCTTCTTAAGCATTATACTTTTGTTGGTATAGATAGGATGTTATATACATTATGTTCTA

mRNA sequence

ATGGCGGCTTCAATCGAGTCTGTGCAATGCTTCGGCCGGAAGAAGACGGCAGTCGCTGTGACGTACTGCAAGCGCGGCCGAGGATTAATCAAGATCAATGGCTGCCCAATTGAGCTTGTCGAGCCAGAGATCTTGCGCTTCAAGGCTTACGAACCCATCCTCCTCCTCGGCCGCCATCGTTTCTCCGGCGTCGACATGCGAATCAGAGTCAAAGGCGGAGGCCACACCTCGCAGATCTATGCTATCCGTCAGAGCATTGCCAAGGCTCTTGTCGCCTTCTACCAGAAGTACGTCGACGAACAGAGCAAGAAGGAGATTAAGGACATTCTCGTCCGCTACGATCGGACTTTGCTCGTCGCCGATCCCAGACGTTGTGAGCCGAAGAAGTTTGGTGGTCGTGGAGCTCGTGCTAGGTCGAAGACTGTCCTCACAAACCAGCAATTGGGTCTATTTACATACCTTTTGCTCATCCCAATTGAAGTTTTGAAGAGGTCATCCTATTTAGAACAATTTCAGAGTCAGCCTGCTGATGCTTCTTAAGCATTATACTTTTGTTGGTATAGATAGGATGTTATATACATTATGTTCTA

Coding sequence (CDS)

ATGGCGGCTTCAATCGAGTCTGTGCAATGCTTCGGCCGGAAGAAGACGGCAGTCGCTGTGACGTACTGCAAGCGCGGCCGAGGATTAATCAAGATCAATGGCTGCCCAATTGAGCTTGTCGAGCCAGAGATCTTGCGCTTCAAGGCTTACGAACCCATCCTCCTCCTCGGCCGCCATCGTTTCTCCGGCGTCGACATGCGAATCAGAGTCAAAGGCGGAGGCCACACCTCGCAGATCTATGCTATCCGTCAGAGCATTGCCAAGGCTCTTGTCGCCTTCTACCAGAAGTACGTCGACGAACAGAGCAAGAAGGAGATTAAGGACATTCTCGTCCGCTACGATCGGACTTTGCTCGTCGCCGATCCCAGACGTTGTGAGCCGAAGAAGTTTGGTGGTCGTGGAGCTCGTGCTAGGTCGAAGACTGTCCTCACAAACCAGCAATTGGGTCTATTTACATACCTTTTGCTCATCCCAATTGAAGTTTTGAAGAGGTCATCCTATTTAGAACAATTTCAGAGTCAGCCTGCTGATGCTTCTTAA

Protein sequence

MAASIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARSKTVLTNQQLGLFTYLLLIPIEVLKRSSYLEQFQSQPADAS
Homology
[Close]
BLAST of Cp4.1LG01g01990 vs. Swiss-Prot
Match: RS16_GOSHI (40S ribosomal protein S16 OS=Gossypium hirsutum GN=RPS16 PE=2 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 1.5e-68
Identity = 129/135 (95.56%), Postives = 132/135 (97.78%), Query Frame = 1 

Query: 4   SIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFSG 63
           +IESVQCFGRKKTAVAVT+CKRGRGLIKINGCPIELVEPEILRFKA EPILLLGR RF+G
Sbjct: 5   AIESVQCFGRKKTAVAVTHCKRGRGLIKINGCPIELVEPEILRFKAVEPILLLGRQRFTG 64

Query: 64  VDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPR 123
           VDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILV YDRTLLVADPR
Sbjct: 65  VDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVGYDRTLLVADPR 124

Query: 124 RCEPKKFGGRGARAR 139
           RCEPKKFGGRGARAR
Sbjct: 125 RCEPKKFGGRGARAR 139

[Close]
BLAST of Cp4.1LG01g01990 vs. Swiss-Prot
Match: RS161_ARATH (40S ribosomal protein S16-1 OS=Arabidopsis thaliana GN=RPS16A PE=2 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 2.0e-65
Identity = 119/133 (89.47%), Postives = 129/133 (96.99%), Query Frame = 1 

Query: 6   ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFSGVD 65
           ESVQCFGRKKTAVAVT+CKRG GLIK+NGCPIEL +PEILRFK +EPILLLG+HRF+GV+
Sbjct: 8   ESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPILLLGKHRFAGVN 67

Query: 66  MRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 125
           MRIRV GGGHTSQ+YAIRQSIAKALVA+YQKYVDEQSKKEIKDILVRYDRTLLVADPRRC
Sbjct: 68  MRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 127

Query: 126 EPKKFGGRGARAR 139
           EPKKFGGRGAR+R
Sbjct: 128 EPKKFGGRGARSR 140

[Close]
BLAST of Cp4.1LG01g01990 vs. Swiss-Prot
Match: RS163_ARATH (40S ribosomal protein S16-3 OS=Arabidopsis thaliana GN=RPS16C PE=2 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 2.6e-65
Identity = 118/133 (88.72%), Postives = 129/133 (96.99%), Query Frame = 1 

Query: 6   ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFSGVD 65
           ESVQCFGRKKTAVAVT+CKRG GLIK+NGCPIEL +PEILRFK +EP+LLLG+HRF+GV+
Sbjct: 8   ESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPVLLLGKHRFAGVN 67

Query: 66  MRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 125
           MRIRV GGGHTSQ+YAIRQSIAKALVA+YQKYVDEQSKKEIKDILVRYDRTLLVADPRRC
Sbjct: 68  MRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 127

Query: 126 EPKKFGGRGARAR 139
           EPKKFGGRGAR+R
Sbjct: 128 EPKKFGGRGARSR 140

[Close]
BLAST of Cp4.1LG01g01990 vs. Swiss-Prot
Match: RS16_FRIAG (40S ribosomal protein S16 OS=Fritillaria agrestis GN=RPS16 PE=2 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 7.5e-65
Identity = 119/133 (89.47%), Postives = 130/133 (97.74%), Query Frame = 1 

Query: 6   ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFSGVD 65
           ESVQCFGRKKTAVAVT+CKRGRGLIK+NG PIELV+PEILR+KA+EPILLLGRHRF GVD
Sbjct: 7   ESVQCFGRKKTAVAVTHCKRGRGLIKVNGSPIELVKPEILRYKAFEPILLLGRHRFVGVD 66

Query: 66  MRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 125
           MRIRV+GGG TSQIYAIRQSIAKALVA+YQKYVDEQ+KKE+KDIL+RYDRTLLVADPRRC
Sbjct: 67  MRIRVRGGGKTSQIYAIRQSIAKALVAYYQKYVDEQAKKEVKDILMRYDRTLLVADPRRC 126

Query: 126 EPKKFGGRGARAR 139
           EPKKFGGRGAR+R
Sbjct: 127 EPKKFGGRGARSR 139

[Close]
BLAST of Cp4.1LG01g01990 vs. Swiss-Prot
Match: RS16_TORRU (40S ribosomal protein S16 OS=Tortula ruralis GN=RPS16 PE=2 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 2.0e-62
Identity = 116/136 (85.29%), Postives = 132/136 (97.06%), Query Frame = 1 

Query: 3   ASIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFS 62
           A++ESVQCFGRKKTAVAVTYC+RGRGLI++   PIELVEPEILR+KA+EP+LLLGR +F+
Sbjct: 2   AAVESVQCFGRKKTAVAVTYCRRGRGLIRLT-VPIELVEPEILRYKAFEPVLLLGRSKFA 61

Query: 63  GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADP 122
           GVDMRIRVKGGG+TSQIYAIRQSIAKALVA++QKYVDEQSKKEIKD+L+RYDRTLLVADP
Sbjct: 62  GVDMRIRVKGGGNTSQIYAIRQSIAKALVAYFQKYVDEQSKKEIKDVLLRYDRTLLVADP 121

Query: 123 RRCEPKKFGGRGARAR 139
           RRCEPKKFGGRGAR+R
Sbjct: 122 RRCEPKKFGGRGARSR 136

[Close]
BLAST of Cp4.1LG01g01990 vs. TrEMBL
Match: A0A0A0L6F6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G202730 PE=3 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 2.9e-71
Identity = 137/138 (99.28%), Postives = 137/138 (99.28%), Query Frame = 1 

Query: 1   MAASIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60
           MAA IESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR
Sbjct: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60

Query: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120
           FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA
Sbjct: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120

Query: 121 DPRRCEPKKFGGRGARAR 139
           DPRRCEPKKFGGRGARAR
Sbjct: 121 DPRRCEPKKFGGRGARAR 138

[Close]
BLAST of Cp4.1LG01g01990 vs. TrEMBL
Match: A0A067L229_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00289 PE=3 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 2.4e-70
Identity = 135/137 (98.54%), Postives = 136/137 (99.27%), Query Frame = 1 

Query: 2   AASIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF 61
           AA IESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF
Sbjct: 3   AAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF 62

Query: 62  SGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD 121
           +GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD
Sbjct: 63  AGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD 122

Query: 122 PRRCEPKKFGGRGARAR 139
           PRRCEPKKFGGRGARAR
Sbjct: 123 PRRCEPKKFGGRGARAR 139

[Close]
BLAST of Cp4.1LG01g01990 vs. TrEMBL
Match: I3NMP6_HEVBR (40S ribosomal protein S16A OS=Hevea brasiliensis GN=RPS16A PE=2 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 2.4e-70
Identity = 135/137 (98.54%), Postives = 136/137 (99.27%), Query Frame = 1 

Query: 2   AASIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF 61
           AA IESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF
Sbjct: 5   AAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF 64

Query: 62  SGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD 121
           +GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD
Sbjct: 65  AGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD 124

Query: 122 PRRCEPKKFGGRGARAR 139
           PRRCEPKKFGGRGARAR
Sbjct: 125 PRRCEPKKFGGRGARAR 141

[Close]
BLAST of Cp4.1LG01g01990 vs. TrEMBL
Match: G9F9P5_HEVBR (Putative ribosomal protein S9 (Fragment) OS=Hevea brasiliensis PE=2 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 5.4e-70
Identity = 134/137 (97.81%), Postives = 136/137 (99.27%), Query Frame = 1 

Query: 2   AASIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF 61
           +A IESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF
Sbjct: 1   SAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF 60

Query: 62  SGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD 121
           +GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD
Sbjct: 61  AGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD 120

Query: 122 PRRCEPKKFGGRGARAR 139
           PRRCEPKKFGGRGARAR
Sbjct: 121 PRRCEPKKFGGRGARAR 137

[Close]
BLAST of Cp4.1LG01g01990 vs. TrEMBL
Match: A0A061ETH8_THECC (Ribosomal protein S5 domain 2-like superfamily protein OS=Theobroma cacao GN=TCM_020568 PE=3 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 5.4e-70
Identity = 133/138 (96.38%), Postives = 137/138 (99.28%), Query Frame = 1 

Query: 1   MAASIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60
           MAA +ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILR+KAYEPILLLGRHR
Sbjct: 1   MAAPVESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRYKAYEPILLLGRHR 60

Query: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120
           F+GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQK+VDEQSKKEIKDILVRYDRTLLVA
Sbjct: 61  FAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKFVDEQSKKEIKDILVRYDRTLLVA 120

Query: 121 DPRRCEPKKFGGRGARAR 139
           DPRRCEPKKFGGRGARAR
Sbjct: 121 DPRRCEPKKFGGRGARAR 138

[Close]
BLAST of Cp4.1LG01g01990 vs. TAIR10
Match: AT2G09990.1 (AT2G09990.1 Ribosomal protein S5 domain 2-like superfamily protein)

HSP 1 Score: 250.0 bits (637), Expect = 1.1e-66
Identity = 119/133 (89.47%), Postives = 129/133 (96.99%), Query Frame = 1 

Query: 6   ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFSGVD 65
           ESVQCFGRKKTAVAVT+CKRG GLIK+NGCPIEL +PEILRFK +EPILLLG+HRF+GV+
Sbjct: 8   ESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPILLLGKHRFAGVN 67

Query: 66  MRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 125
           MRIRV GGGHTSQ+YAIRQSIAKALVA+YQKYVDEQSKKEIKDILVRYDRTLLVADPRRC
Sbjct: 68  MRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 127

Query: 126 EPKKFGGRGARAR 139
           EPKKFGGRGAR+R
Sbjct: 128 EPKKFGGRGARSR 140

[Close]
BLAST of Cp4.1LG01g01990 vs. TAIR10
Match: AT5G18380.1 (AT5G18380.1 Ribosomal protein S5 domain 2-like superfamily protein)

HSP 1 Score: 249.6 bits (636), Expect = 1.5e-66
Identity = 118/133 (88.72%), Postives = 129/133 (96.99%), Query Frame = 1 

Query: 6   ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFSGVD 65
           ESVQCFGRKKTAVAVT+CKRG GLIK+NGCPIEL +PEILRFK +EP+LLLG+HRF+GV+
Sbjct: 8   ESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPVLLLGKHRFAGVN 67

Query: 66  MRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 125
           MRIRV GGGHTSQ+YAIRQSIAKALVA+YQKYVDEQSKKEIKDILVRYDRTLLVADPRRC
Sbjct: 68  MRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 127

Query: 126 EPKKFGGRGARAR 139
           EPKKFGGRGAR+R
Sbjct: 128 EPKKFGGRGARSR 140

[Close]
BLAST of Cp4.1LG01g01990 vs. TAIR10
Match: AT3G04230.1 (AT3G04230.1 Ribosomal protein S5 domain 2-like superfamily protein)

HSP 1 Score: 235.3 bits (599), Expect = 2.8e-62
Identity = 112/133 (84.21%), Postives = 124/133 (93.23%), Query Frame = 1 

Query: 6   ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFSGVD 65
           ESVQCFGRKKTA AVTYCKRG G+IK+NG PIEL +PEILRFK +EP+LLLG+HRF+GVD
Sbjct: 8   ESVQCFGRKKTATAVTYCKRGSGMIKLNGSPIELYQPEILRFKIFEPVLLLGKHRFAGVD 67

Query: 66  MRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 125
           MRIR  GGG+TS++YAIRQSIAKALVA+YQKYVDEQSKKEIKDIL+RYDRTLLVADPRRC
Sbjct: 68  MRIRATGGGNTSRVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILMRYDRTLLVADPRRC 127

Query: 126 EPKKFGGRGARAR 139
           E KKFGG GARAR
Sbjct: 128 ESKKFGGPGARAR 140

[Close]
BLAST of Cp4.1LG01g01990 vs. NCBI nr
Match: gi|449438394|ref|XP_004136973.1| (PREDICTED: 40S ribosomal protein S16 [Cucumis sativus])

HSP 1 Score: 276.2 bits (705), Expect = 4.1e-71
Identity = 137/138 (99.28%), Postives = 137/138 (99.28%), Query Frame = 1 

Query: 1   MAASIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60
           MAA IESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR
Sbjct: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60

Query: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120
           FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA
Sbjct: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120

Query: 121 DPRRCEPKKFGGRGARAR 139
           DPRRCEPKKFGGRGARAR
Sbjct: 121 DPRRCEPKKFGGRGARAR 138

[Close]
BLAST of Cp4.1LG01g01990 vs. NCBI nr
Match: gi|802563143|ref|XP_012066736.1| (PREDICTED: 40S ribosomal protein S16 [Jatropha curcas])

HSP 1 Score: 273.1 bits (697), Expect = 3.5e-70
Identity = 135/137 (98.54%), Postives = 136/137 (99.27%), Query Frame = 1 

Query: 2   AASIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF 61
           AA IESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF
Sbjct: 3   AAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF 62

Query: 62  SGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD 121
           +GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD
Sbjct: 63  AGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD 122

Query: 122 PRRCEPKKFGGRGARAR 139
           PRRCEPKKFGGRGARAR
Sbjct: 123 PRRCEPKKFGGRGARAR 139

[Close]
BLAST of Cp4.1LG01g01990 vs. NCBI nr
Match: gi|313586545|gb|ADR71283.1| (40S ribosomal protein S16A [Hevea brasiliensis])

HSP 1 Score: 273.1 bits (697), Expect = 3.5e-70
Identity = 135/137 (98.54%), Postives = 136/137 (99.27%), Query Frame = 1 

Query: 2   AASIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF 61
           AA IESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF
Sbjct: 5   AAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF 64

Query: 62  SGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD 121
           +GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD
Sbjct: 65  AGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD 124

Query: 122 PRRCEPKKFGGRGARAR 139
           PRRCEPKKFGGRGARAR
Sbjct: 125 PRRCEPKKFGGRGARAR 141

[Close]
BLAST of Cp4.1LG01g01990 vs. NCBI nr
Match: gi|225432586|ref|XP_002281350.1| (PREDICTED: 40S ribosomal protein S16 [Vitis vinifera])

HSP 1 Score: 271.9 bits (694), Expect = 7.8e-70
Identity = 134/138 (97.10%), Postives = 136/138 (98.55%), Query Frame = 1 

Query: 1   MAASIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60
           MAA IESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIEL+EPEILR KAYEPILLLGRHR
Sbjct: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELIEPEILRHKAYEPILLLGRHR 60

Query: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120
           F+GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA
Sbjct: 61  FAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120

Query: 121 DPRRCEPKKFGGRGARAR 139
           DPRRCEPKKFGGRGARAR
Sbjct: 121 DPRRCEPKKFGGRGARAR 138

[Close]
BLAST of Cp4.1LG01g01990 vs. NCBI nr
Match: gi|590657854|ref|XP_007034683.1| (Ribosomal protein S5 domain 2-like superfamily protein [Theobroma cacao])

HSP 1 Score: 271.9 bits (694), Expect = 7.8e-70
Identity = 133/138 (96.38%), Postives = 137/138 (99.28%), Query Frame = 1 

Query: 1   MAASIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60
           MAA +ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILR+KAYEPILLLGRHR
Sbjct: 1   MAAPVESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRYKAYEPILLLGRHR 60

Query: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120
           F+GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQK+VDEQSKKEIKDILVRYDRTLLVA
Sbjct: 61  FAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKFVDEQSKKEIKDILVRYDRTLLVA 120

Query: 121 DPRRCEPKKFGGRGARAR 139
           DPRRCEPKKFGGRGARAR
Sbjct: 121 DPRRCEPKKFGGRGARAR 138

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g01990 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RS16_GOSHI1.5e-6895.5640S ribosomal protein S16 OS=Gossypium hirsutum GN=RPS16 PE=2 SV=1[more]
RS161_ARATH2.0e-6589.4740S ribosomal protein S16-1 OS=Arabidopsis thaliana GN=RPS16A PE=2 SV=1[more]
RS163_ARATH2.6e-6588.7240S ribosomal protein S16-3 OS=Arabidopsis thaliana GN=RPS16C PE=2 SV=1[more]
RS16_FRIAG7.5e-6589.4740S ribosomal protein S16 OS=Fritillaria agrestis GN=RPS16 PE=2 SV=1[more]
RS16_TORRU2.0e-6285.2940S ribosomal protein S16 OS=Tortula ruralis GN=RPS16 PE=2 SV=1[more]
BLAST of Cp4.1LG01g01990 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L6F6_CUCSA2.9e-7199.28Uncharacterized protein OS=Cucumis sativus GN=Csa_3G202730 PE=3 SV=1[more]
A0A067L229_JATCU2.4e-7098.54Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00289 PE=3 SV=1[more]
I3NMP6_HEVBR2.4e-7098.5440S ribosomal protein S16A OS=Hevea brasiliensis GN=RPS16A PE=2 SV=1[more]
G9F9P5_HEVBR5.4e-7097.81Putative ribosomal protein S9 (Fragment) OS=Hevea brasiliensis PE=2 SV=1[more]
A0A061ETH8_THECC5.4e-7096.38Ribosomal protein S5 domain 2-like superfamily protein OS=Theobroma cacao GN=TCM... [more]
BLAST of Cp4.1LG01g01990 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G09990.11.1e-6689.47 Ribosomal protein S5 domain 2-like superfamily protein[more]
AT5G18380.11.5e-6688.72 Ribosomal protein S5 domain 2-like superfamily protein[more]
AT3G04230.12.8e-6284.21 Ribosomal protein S5 domain 2-like superfamily protein[more]
BLAST of Cp4.1LG01g01990 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449438394|ref|XP_004136973.1|4.1e-7199.28PREDICTED: 40S ribosomal protein S16 [Cucumis sativus][more]
gi|802563143|ref|XP_012066736.1|3.5e-7098.54PREDICTED: 40S ribosomal protein S16 [Jatropha curcas][more]
gi|313586545|gb|ADR71283.1|3.5e-7098.5440S ribosomal protein S16A [Hevea brasiliensis][more]
gi|225432586|ref|XP_002281350.1|7.8e-7097.10PREDICTED: 40S ribosomal protein S16 [Vitis vinifera][more]
gi|590657854|ref|XP_007034683.1|7.8e-7096.38Ribosomal protein S5 domain 2-like superfamily protein [Theobroma cacao][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: INTERPRO
TermDefinition
IPR020574Ribosomal_S9_CS
IPR020568Ribosomal_S5_D2-typ_fold
IPR014721Ribosomal_S5_D2-typ_fold_subgr
IPR000754Ribosomal_S9
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
biological_process GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
cellular_component GO:0005840 ribosome
cellular_component GO:0022627 cytosolic small ribosomal subunit
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0003723 RNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g01990.1Cp4.1LG01g01990.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000754Ribosomal protein S9PANTHERPTHR21569RIBOSOMAL PROTEIN S9coord: 1..144
score: 8.3E
IPR000754Ribosomal protein S9PFAMPF00380Ribosomal_S9coord: 12..140
score: 1.5
IPR014721Ribosomal protein S5 domain 2-type fold, subgroupGENE3DG3DSA:3.30.230.10coord: 7..140
score: 1.9
IPR020568Ribosomal protein S5 domain 2-type foldunknownSSF54211Ribosomal protein S5 domain 2-likecoord: 7..140
score: 1.86
IPR020574Ribosomal protein S9, conserved sitePROSITEPS00360RIBOSOMAL_S9coord: 72..90
scor
NoneNo IPR availablePANTHERPTHR21569:SF6SUBFAMILY NOT NAMEDcoord: 1..144
score: 8.3E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG01g01990CmaCh04G005100Cucurbita maxima (Rimu)cmacpeB720
Cp4.1LG01g01990CmoCh04G005490Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g01990Cla013082Watermelon (97103) v1cpewmB431
Cp4.1LG01g01990Cla013050Watermelon (97103) v1cpewmB433
Cp4.1LG01g01990Csa3G215620Cucumber (Chinese Long) v2cpecuB395
Cp4.1LG01g01990MELO3C019490Melon (DHL92) v3.5.1cpemeB412
Cp4.1LG01g01990MELO3C019524Melon (DHL92) v3.5.1cpemeB411
Cp4.1LG01g01990ClCG05G010150Watermelon (Charleston Gray)cpewcgB392
Cp4.1LG01g01990ClCG05G009810Watermelon (Charleston Gray)cpewcgB394
Cp4.1LG01g01990CSPI03G18880Wild cucumber (PI 183967)cpecpiB394
Cp4.1LG01g01990MELO3C019490.2Melon (DHL92) v3.6.1cpemedB481
Cp4.1LG01g01990CsaV3_3G018990Cucumber (Chinese Long) v3cpecucB0494
Cp4.1LG01g01990Bhi01G001237Wax gourdcpewgoB0517
Cp4.1LG01g01990Bhi01G001267Wax gourdcpewgoB0516
Cp4.1LG01g01990CsGy3G018760Cucumber (Gy14) v2cgybcpeB372
Cp4.1LG01g01990Carg08179Silver-seed gourdcarcpeB0527
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g01990Cucurbita pepo (Zucchini)cpecpeB234
Cp4.1LG01g01990Cucurbita maxima (Rimu)cmacpeB351
Cp4.1LG01g01990Cucurbita moschata (Rifu)cmocpeB311
Cp4.1LG01g01990Wild cucumber (PI 183967)cpecpiB388
Cp4.1LG01g01990Cucumber (Chinese Long) v2cpecuB389
Cp4.1LG01g01990Bottle gourd (USVL1VR-Ls)cpelsiB369
Cp4.1LG01g01990Cucumber (Gy14) v2cgybcpeB362
Cp4.1LG01g01990Silver-seed gourdcarcpeB0927
Cp4.1LG01g01990Cucumber (Chinese Long) v3cpecucB0484