CmaCh04G005100 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh04G005100
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Component of cytosolic 80S ribosome and 40S small subunit
Location	Cma_Chr04 : 2607841 .. 2608275 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGCTTCAATCGAGTCTGTGCAATGCTTCGGCCGGAAGAAGACGGCTGTCGCTGTGACGTACTGCAAACGCGGCCGGGGCTTAATCAAGATCAATGGCTGCCCAATTGAGCTTGTCGAGCCAGAGATCTTGCGATTCAAGGCCTACGAACCCATCCTCCTCCTCGGCCGCCATCGTTTCTCCGGCGTCGACATGCGAATCAGAGTCAAAGGCGGAGGCCACACCTCGCAGATCTATGCTATCCGTCAGAGCATTGCCAAGGCTCTTGTCGCCTTCTACCAGAAGTACGTCGACGAACAGAGCAAGAAGGAGATTAAGGACATTCTAGTCCGCTACGATCGGACTTTGCTCGTCGCCGATCCCAGACGCTGTGAGCCGAAGAAGTTTGGTGGTCGTGGAGCTCGTGCTAGGTTTCAGAAATCATATCGTTGA

mRNA sequence

ATGGCGGCTTCAATCGAGTCTGTGCAATGCTTCGGCCGGAAGAAGACGGCTGTCGCTGTGACGTACTGCAAACGCGGCCGGGGCTTAATCAAGATCAATGGCTGCCCAATTGAGCTTGTCGAGCCAGAGATCTTGCGATTCAAGGCCTACGAACCCATCCTCCTCCTCGGCCGCCATCGTTTCTCCGGCGTCGACATGCGAATCAGAGTCAAAGGCGGAGGCCACACCTCGCAGATCTATGCTATCCGTCAGAGCATTGCCAAGGCTCTTGTCGCCTTCTACCAGAAGTACGTCGACGAACAGAGCAAGAAGGAGATTAAGGACATTCTAGTCCGCTACGATCGGACTTTGCTCGTCGCCGATCCCAGACGCTGTGAGCCGAAGAAGTTTGGTGGTCGTGGAGCTCGTGCTAGGTTTCAGAAATCATATCGTTGA

Coding sequence (CDS)

ATGGCGGCTTCAATCGAGTCTGTGCAATGCTTCGGCCGGAAGAAGACGGCTGTCGCTGTGACGTACTGCAAACGCGGCCGGGGCTTAATCAAGATCAATGGCTGCCCAATTGAGCTTGTCGAGCCAGAGATCTTGCGATTCAAGGCCTACGAACCCATCCTCCTCCTCGGCCGCCATCGTTTCTCCGGCGTCGACATGCGAATCAGAGTCAAAGGCGGAGGCCACACCTCGCAGATCTATGCTATCCGTCAGAGCATTGCCAAGGCTCTTGTCGCCTTCTACCAGAAGTACGTCGACGAACAGAGCAAGAAGGAGATTAAGGACATTCTAGTCCGCTACGATCGGACTTTGCTCGTCGCCGATCCCAGACGCTGTGAGCCGAAGAAGTTTGGTGGTCGTGGAGCTCGTGCTAGGTTTCAGAAATCATATCGTTGA

Protein sequence

MAASIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR

Homology

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BLAST of CmaCh04G005100 vs. Swiss-Prot
Match: RS16_GOSHI (40S ribosomal protein S16 OS=Gossypium hirsutum GN=RPS16 PE=2 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 5.1e-72
Identity = 135/141 (95.74%), Postives = 138/141 (97.87%), Query Frame = 1


Query: 4   SIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFSG 63
           +IESVQCFGRKKTAVAVT+CKRGRGLIKINGCPIELVEPEILRFKA EPILLLGR RF+G
Sbjct: 5   AIESVQCFGRKKTAVAVTHCKRGRGLIKINGCPIELVEPEILRFKAVEPILLLGRQRFTG 64

Query: 64  VDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPR 123
           VDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILV YDRTLLVADPR
Sbjct: 65  VDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVGYDRTLLVADPR 124

Query: 124 RCEPKKFGGRGARARFQKSYR 145
           RCEPKKFGGRGARARFQKSYR
Sbjct: 125 RCEPKKFGGRGARARFQKSYR 145

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BLAST of CmaCh04G005100 vs. Swiss-Prot
Match: RS161_ARATH (40S ribosomal protein S16-1 OS=Arabidopsis thaliana GN=RPS16A PE=2 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 1.5e-68
Identity = 124/139 (89.21%), Postives = 135/139 (97.12%), Query Frame = 1


Query: 6   ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFSGVD 65
           ESVQCFGRKKTAVAVT+CKRG GLIK+NGCPIEL +PEILRFK +EPILLLG+HRF+GV+
Sbjct: 8   ESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPILLLGKHRFAGVN 67

Query: 66  MRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 125
           MRIRV GGGHTSQ+YAIRQSIAKALVA+YQKYVDEQSKKEIKDILVRYDRTLLVADPRRC
Sbjct: 68  MRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 127

Query: 126 EPKKFGGRGARARFQKSYR 145
           EPKKFGGRGAR+R+QKSYR
Sbjct: 128 EPKKFGGRGARSRYQKSYR 146

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BLAST of CmaCh04G005100 vs. Swiss-Prot
Match: RS163_ARATH (40S ribosomal protein S16-3 OS=Arabidopsis thaliana GN=RPS16C PE=2 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 2.0e-68
Identity = 123/139 (88.49%), Postives = 135/139 (97.12%), Query Frame = 1


Query: 6   ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFSGVD 65
           ESVQCFGRKKTAVAVT+CKRG GLIK+NGCPIEL +PEILRFK +EP+LLLG+HRF+GV+
Sbjct: 8   ESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPVLLLGKHRFAGVN 67

Query: 66  MRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 125
           MRIRV GGGHTSQ+YAIRQSIAKALVA+YQKYVDEQSKKEIKDILVRYDRTLLVADPRRC
Sbjct: 68  MRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 127

Query: 126 EPKKFGGRGARARFQKSYR 145
           EPKKFGGRGAR+R+QKSYR
Sbjct: 128 EPKKFGGRGARSRYQKSYR 146

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BLAST of CmaCh04G005100 vs. Swiss-Prot
Match: RS16_FRIAG (40S ribosomal protein S16 OS=Fritillaria agrestis GN=RPS16 PE=2 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 2.6e-68
Identity = 125/139 (89.93%), Postives = 136/139 (97.84%), Query Frame = 1


Query: 6   ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFSGVD 65
           ESVQCFGRKKTAVAVT+CKRGRGLIK+NG PIELV+PEILR+KA+EPILLLGRHRF GVD
Sbjct: 7   ESVQCFGRKKTAVAVTHCKRGRGLIKVNGSPIELVKPEILRYKAFEPILLLGRHRFVGVD 66

Query: 66  MRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 125
           MRIRV+GGG TSQIYAIRQSIAKALVA+YQKYVDEQ+KKE+KDIL+RYDRTLLVADPRRC
Sbjct: 67  MRIRVRGGGKTSQIYAIRQSIAKALVAYYQKYVDEQAKKEVKDILMRYDRTLLVADPRRC 126

Query: 126 EPKKFGGRGARARFQKSYR 145
           EPKKFGGRGAR+RFQKSYR
Sbjct: 127 EPKKFGGRGARSRFQKSYR 145

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BLAST of CmaCh04G005100 vs. Swiss-Prot
Match: RS16_TORRU (40S ribosomal protein S16 OS=Tortula ruralis GN=RPS16 PE=2 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 7.1e-66
Identity = 122/142 (85.92%), Postives = 138/142 (97.18%), Query Frame = 1


Query: 3   ASIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFS 62
           A++ESVQCFGRKKTAVAVTYC+RGRGLI++   PIELVEPEILR+KA+EP+LLLGR +F+
Sbjct: 2   AAVESVQCFGRKKTAVAVTYCRRGRGLIRLT-VPIELVEPEILRYKAFEPVLLLGRSKFA 61

Query: 63  GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADP 122
           GVDMRIRVKGGG+TSQIYAIRQSIAKALVA++QKYVDEQSKKEIKD+L+RYDRTLLVADP
Sbjct: 62  GVDMRIRVKGGGNTSQIYAIRQSIAKALVAYFQKYVDEQSKKEIKDVLLRYDRTLLVADP 121

Query: 123 RRCEPKKFGGRGARARFQKSYR 145
           RRCEPKKFGGRGAR+RFQKSYR
Sbjct: 122 RRCEPKKFGGRGARSRFQKSYR 142

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BLAST of CmaCh04G005100 vs. TrEMBL
Match: A0A0A0L6F6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G202730 PE=3 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 1.0e-74
Identity = 143/144 (99.31%), Postives = 143/144 (99.31%), Query Frame = 1


Query: 1   MAASIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60
           MAA IESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR
Sbjct: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60

Query: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120
           FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA
Sbjct: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120

Query: 121 DPRRCEPKKFGGRGARARFQKSYR 145
           DPRRCEPKKFGGRGARARFQKSYR
Sbjct: 121 DPRRCEPKKFGGRGARARFQKSYR 144

[Close]

BLAST of CmaCh04G005100 vs. TrEMBL
Match: I3NMP6_HEVBR (40S ribosomal protein S16A OS=Hevea brasiliensis GN=RPS16A PE=2 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 8.5e-74
Identity = 141/143 (98.60%), Postives = 142/143 (99.30%), Query Frame = 1


Query: 2   AASIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF 61
           AA IESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF
Sbjct: 5   AAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF 64

Query: 62  SGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD 121
           +GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD
Sbjct: 65  AGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD 124

Query: 122 PRRCEPKKFGGRGARARFQKSYR 145
           PRRCEPKKFGGRGARARFQKSYR
Sbjct: 125 PRRCEPKKFGGRGARARFQKSYR 147

[Close]

BLAST of CmaCh04G005100 vs. TrEMBL
Match: A0A067L229_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00289 PE=3 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 8.5e-74
Identity = 141/143 (98.60%), Postives = 142/143 (99.30%), Query Frame = 1


Query: 2   AASIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF 61
           AA IESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF
Sbjct: 3   AAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF 62

Query: 62  SGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD 121
           +GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD
Sbjct: 63  AGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD 122

Query: 122 PRRCEPKKFGGRGARARFQKSYR 145
           PRRCEPKKFGGRGARARFQKSYR
Sbjct: 123 PRRCEPKKFGGRGARARFQKSYR 145

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BLAST of CmaCh04G005100 vs. TrEMBL
Match: A0A061ETH8_THECC (Ribosomal protein S5 domain 2-like superfamily protein OS=Theobroma cacao GN=TCM_020568 PE=3 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 1.9e-73
Identity = 139/144 (96.53%), Postives = 143/144 (99.31%), Query Frame = 1


Query: 1   MAASIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60
           MAA +ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILR+KAYEPILLLGRHR
Sbjct: 1   MAAPVESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRYKAYEPILLLGRHR 60

Query: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120
           F+GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQK+VDEQSKKEIKDILVRYDRTLLVA
Sbjct: 61  FAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKFVDEQSKKEIKDILVRYDRTLLVA 120

Query: 121 DPRRCEPKKFGGRGARARFQKSYR 145
           DPRRCEPKKFGGRGARARFQKSYR
Sbjct: 121 DPRRCEPKKFGGRGARARFQKSYR 144

[Close]

BLAST of CmaCh04G005100 vs. TrEMBL
Match: G9F9P5_HEVBR (Putative ribosomal protein S9 (Fragment) OS=Hevea brasiliensis PE=2 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 1.9e-73
Identity = 140/143 (97.90%), Postives = 142/143 (99.30%), Query Frame = 1


Query: 2   AASIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF 61
           +A IESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF
Sbjct: 1   SAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF 60

Query: 62  SGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD 121
           +GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD
Sbjct: 61  AGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD 120

Query: 122 PRRCEPKKFGGRGARARFQKSYR 145
           PRRCEPKKFGGRGARARFQKSYR
Sbjct: 121 PRRCEPKKFGGRGARARFQKSYR 143

[Close]

BLAST of CmaCh04G005100 vs. TAIR10
Match: AT2G09990.1 (AT2G09990.1 Ribosomal protein S5 domain 2-like superfamily protein)

HSP 1 Score: 260.0 bits (663), Expect = 8.7e-70
Identity = 124/139 (89.21%), Postives = 135/139 (97.12%), Query Frame = 1


Query: 6   ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFSGVD 65
           ESVQCFGRKKTAVAVT+CKRG GLIK+NGCPIEL +PEILRFK +EPILLLG+HRF+GV+
Sbjct: 8   ESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPILLLGKHRFAGVN 67

Query: 66  MRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 125
           MRIRV GGGHTSQ+YAIRQSIAKALVA+YQKYVDEQSKKEIKDILVRYDRTLLVADPRRC
Sbjct: 68  MRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 127

Query: 126 EPKKFGGRGARARFQKSYR 145
           EPKKFGGRGAR+R+QKSYR
Sbjct: 128 EPKKFGGRGARSRYQKSYR 146

[Close]

BLAST of CmaCh04G005100 vs. TAIR10
Match: AT5G18380.1 (AT5G18380.1 Ribosomal protein S5 domain 2-like superfamily protein)

HSP 1 Score: 259.6 bits (662), Expect = 1.1e-69
Identity = 123/139 (88.49%), Postives = 135/139 (97.12%), Query Frame = 1


Query: 6   ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFSGVD 65
           ESVQCFGRKKTAVAVT+CKRG GLIK+NGCPIEL +PEILRFK +EP+LLLG+HRF+GV+
Sbjct: 8   ESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPVLLLGKHRFAGVN 67

Query: 66  MRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 125
           MRIRV GGGHTSQ+YAIRQSIAKALVA+YQKYVDEQSKKEIKDILVRYDRTLLVADPRRC
Sbjct: 68  MRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 127

Query: 126 EPKKFGGRGARARFQKSYR 145
           EPKKFGGRGAR+R+QKSYR
Sbjct: 128 EPKKFGGRGARSRYQKSYR 146

[Close]

BLAST of CmaCh04G005100 vs. TAIR10
Match: AT3G04230.1 (AT3G04230.1 Ribosomal protein S5 domain 2-like superfamily protein)

HSP 1 Score: 246.5 bits (628), Expect = 9.9e-66
Identity = 118/139 (84.89%), Postives = 130/139 (93.53%), Query Frame = 1


Query: 6   ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFSGVD 65
           ESVQCFGRKKTA AVTYCKRG G+IK+NG PIEL +PEILRFK +EP+LLLG+HRF+GVD
Sbjct: 8   ESVQCFGRKKTATAVTYCKRGSGMIKLNGSPIELYQPEILRFKIFEPVLLLGKHRFAGVD 67

Query: 66  MRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 125
           MRIR  GGG+TS++YAIRQSIAKALVA+YQKYVDEQSKKEIKDIL+RYDRTLLVADPRRC
Sbjct: 68  MRIRATGGGNTSRVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILMRYDRTLLVADPRRC 127

Query: 126 EPKKFGGRGARARFQKSYR 145
           E KKFGG GARARFQKSYR
Sbjct: 128 ESKKFGGPGARARFQKSYR 146

[Close]

BLAST of CmaCh04G005100 vs. NCBI nr
Match: gi|449438394|ref|XP_004136973.1| (PREDICTED: 40S ribosomal protein S16 [Cucumis sativus])

HSP 1 Score: 287.3 bits (734), Expect = 1.4e-74
Identity = 143/144 (99.31%), Postives = 143/144 (99.31%), Query Frame = 1


Query: 1   MAASIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60
           MAA IESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR
Sbjct: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60

Query: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120
           FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA
Sbjct: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120

Query: 121 DPRRCEPKKFGGRGARARFQKSYR 145
           DPRRCEPKKFGGRGARARFQKSYR
Sbjct: 121 DPRRCEPKKFGGRGARARFQKSYR 144

[Close]

BLAST of CmaCh04G005100 vs. NCBI nr
Match: gi|802563143|ref|XP_012066736.1| (PREDICTED: 40S ribosomal protein S16 [Jatropha curcas])

HSP 1 Score: 284.3 bits (726), Expect = 1.2e-73
Identity = 141/143 (98.60%), Postives = 142/143 (99.30%), Query Frame = 1


Query: 2   AASIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF 61
           AA IESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF
Sbjct: 3   AAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF 62

Query: 62  SGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD 121
           +GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD
Sbjct: 63  AGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD 122

Query: 122 PRRCEPKKFGGRGARARFQKSYR 145
           PRRCEPKKFGGRGARARFQKSYR
Sbjct: 123 PRRCEPKKFGGRGARARFQKSYR 145

[Close]

BLAST of CmaCh04G005100 vs. NCBI nr
Match: gi|313586545|gb|ADR71283.1| (40S ribosomal protein S16A [Hevea brasiliensis])

HSP 1 Score: 284.3 bits (726), Expect = 1.2e-73
Identity = 141/143 (98.60%), Postives = 142/143 (99.30%), Query Frame = 1


Query: 2   AASIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF 61
           AA IESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF
Sbjct: 5   AAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF 64

Query: 62  SGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD 121
           +GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD
Sbjct: 65  AGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD 124

Query: 122 PRRCEPKKFGGRGARARFQKSYR 145
           PRRCEPKKFGGRGARARFQKSYR
Sbjct: 125 PRRCEPKKFGGRGARARFQKSYR 147

[Close]

BLAST of CmaCh04G005100 vs. NCBI nr
Match: gi|225432586|ref|XP_002281350.1| (PREDICTED: 40S ribosomal protein S16 [Vitis vinifera])

HSP 1 Score: 283.1 bits (723), Expect = 2.7e-73
Identity = 140/144 (97.22%), Postives = 142/144 (98.61%), Query Frame = 1


Query: 1   MAASIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60
           MAA IESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIEL+EPEILR KAYEPILLLGRHR
Sbjct: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELIEPEILRHKAYEPILLLGRHR 60

Query: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120
           F+GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA
Sbjct: 61  FAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120

Query: 121 DPRRCEPKKFGGRGARARFQKSYR 145
           DPRRCEPKKFGGRGARARFQKSYR
Sbjct: 121 DPRRCEPKKFGGRGARARFQKSYR 144

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BLAST of CmaCh04G005100 vs. NCBI nr
Match: gi|590657854|ref|XP_007034683.1| (Ribosomal protein S5 domain 2-like superfamily protein [Theobroma cacao])

HSP 1 Score: 283.1 bits (723), Expect = 2.7e-73
Identity = 139/144 (96.53%), Postives = 143/144 (99.31%), Query Frame = 1


Query: 1   MAASIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60
           MAA +ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILR+KAYEPILLLGRHR
Sbjct: 1   MAAPVESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRYKAYEPILLLGRHR 60

Query: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120
           F+GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQK+VDEQSKKEIKDILVRYDRTLLVA
Sbjct: 61  FAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKFVDEQSKKEIKDILVRYDRTLLVA 120

Query: 121 DPRRCEPKKFGGRGARARFQKSYR 145
           DPRRCEPKKFGGRGARARFQKSYR
Sbjct: 121 DPRRCEPKKFGGRGARARFQKSYR 144

The following BLAST results are available for this feature:

BLAST of CmaCh04G005100 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RS16_GOSHI	5.1e-72	95.74	40S ribosomal protein S16 OS=Gossypium hirsutum GN=RPS16 PE=2 SV=1	[more]
RS161_ARATH	1.5e-68	89.21	40S ribosomal protein S16-1 OS=Arabidopsis thaliana GN=RPS16A PE=2 SV=1	[more]
RS163_ARATH	2.0e-68	88.49	40S ribosomal protein S16-3 OS=Arabidopsis thaliana GN=RPS16C PE=2 SV=1	[more]
RS16_FRIAG	2.6e-68	89.93	40S ribosomal protein S16 OS=Fritillaria agrestis GN=RPS16 PE=2 SV=1	[more]
RS16_TORRU	7.1e-66	85.92	40S ribosomal protein S16 OS=Tortula ruralis GN=RPS16 PE=2 SV=1	[more]

BLAST of CmaCh04G005100 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L6F6_CUCSA	1.0e-74	99.31	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G202730 PE=3 SV=1	[more]
I3NMP6_HEVBR	8.5e-74	98.60	40S ribosomal protein S16A OS=Hevea brasiliensis GN=RPS16A PE=2 SV=1	[more]
A0A067L229_JATCU	8.5e-74	98.60	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00289 PE=3 SV=1	[more]
A0A061ETH8_THECC	1.9e-73	96.53	Ribosomal protein S5 domain 2-like superfamily protein OS=Theobroma cacao GN=TCM...	[more]
G9F9P5_HEVBR	1.9e-73	97.90	Putative ribosomal protein S9 (Fragment) OS=Hevea brasiliensis PE=2 SV=1	[more]

BLAST of CmaCh04G005100 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G09990.1	8.7e-70	89.21	Ribosomal protein S5 domain 2-like superfamily protein	[more]
AT5G18380.1	1.1e-69	88.49	Ribosomal protein S5 domain 2-like superfamily protein	[more]
AT3G04230.1	9.9e-66	84.89	Ribosomal protein S5 domain 2-like superfamily protein	[more]

BLAST of CmaCh04G005100 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449438394\|ref\|XP_004136973.1\|	1.4e-74	99.31	PREDICTED: 40S ribosomal protein S16 [Cucumis sativus]	[more]
gi\|802563143\|ref\|XP_012066736.1\|	1.2e-73	98.60	PREDICTED: 40S ribosomal protein S16 [Jatropha curcas]	[more]
gi\|313586545\|gb\|ADR71283.1\|	1.2e-73	98.60	40S ribosomal protein S16A [Hevea brasiliensis]	[more]
gi\|225432586\|ref\|XP_002281350.1\|	2.7e-73	97.22	PREDICTED: 40S ribosomal protein S16 [Vitis vinifera]	[more]
gi\|590657854\|ref\|XP_007034683.1\|	2.7e-73	96.53	Ribosomal protein S5 domain 2-like superfamily protein [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000754	Ribosomal_S9
IPR014721	Ribosomal_S5_D2-typ_fold_subgr
IPR020568	Ribosomal_S5_D2-typ_fold
IPR020574	Ribosomal_S9_CS

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
biological_process	GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
cellular_component	GO:0005840	ribosome
cellular_component	GO:0022627	cytosolic small ribosomal subunit
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G005100.1	CmaCh04G005100.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000754	Ribosomal protein S9	PANTHER	PTHR21569	RIBOSOMAL PROTEIN S9	coord: 1..144 score: 1.2E
IPR000754	Ribosomal protein S9	PFAM	PF00380	Ribosomal_S9	coord: 12..144 score: 1.8
IPR014721	Ribosomal protein S5 domain 2-type fold, subgroup	GENE3D	G3DSA:3.30.230.10		coord: 7..144 score: 2.0
IPR020568	Ribosomal protein S5 domain 2-type fold	unknown	SSF54211	Ribosomal protein S5 domain 2-like	coord: 7..144 score: 1.25
IPR020574	Ribosomal protein S9, conserved site	PROSITE	PS00360	RIBOSOMAL_S9	coord: 72..90 scor
None	No IPR available	PANTHER	PTHR21569:SF6	SUBFAMILY NOT NAMED	coord: 1..144 score: 1.2E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh04G005100	Cla013050	Watermelon (97103) v1	cmawmB703
CmaCh04G005100	Csa3G215620	Cucumber (Chinese Long) v2	cmacuB705
CmaCh04G005100	MELO3C019490	Melon (DHL92) v3.5.1	cmameB691
CmaCh04G005100	ClCG05G009810	Watermelon (Charleston Gray)	cmawcgB659
CmaCh04G005100	CSPI03G18880	Wild cucumber (PI 183967)	cmacpiB713
CmaCh04G005100	CmoCh04G005490	Cucurbita moschata (Rifu)	cmacmoB728
CmaCh04G005100	Cp4.1LG01g01990	Cucurbita pepo (Zucchini)	cmacpeB720
CmaCh04G005100	MELO3C019490.2	Melon (DHL92) v3.6.1	cmamedB777
CmaCh04G005100	CsaV3_3G018990	Cucumber (Chinese Long) v3	cmacucB0840
CmaCh04G005100	Cla97C05G092200	Watermelon (97103) v2	cmawmbB763
CmaCh04G005100	Bhi01G001237	Wax gourd	cmawgoB0852
CmaCh04G005100	CsGy3G018760	Cucumber (Gy14) v2	cgybcmaB419
CmaCh04G005100	Carg08179	Silver-seed gourd	carcmaB0529

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh04G005100	Silver-seed gourd	carcmaB0925
CmaCh04G005100	Cucumber (Chinese Long) v3	cmacucB0829
CmaCh04G005100	Cucurbita maxima (Rimu)	cmacmaB351
CmaCh04G005100	Cucurbita moschata (Rifu)	cmacmoB701
CmaCh04G005100	Wild cucumber (PI 183967)	cmacpiB705
CmaCh04G005100	Cucumber (Chinese Long) v2	cmacuB697
CmaCh04G005100	Cucurbita pepo (Zucchini)	cmacpeB715
CmaCh04G005100	Bottle gourd (USVL1VR-Ls)	cmalsiB690
CmaCh04G005100	Cucumber (Gy14) v2	cgybcmaB410