Carg08179 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg08179
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	40S ribosomal protein S16
Location	Cucurbita_argyrosperma_scaffold_050 : 1161762 .. 1162196 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGCTTCAATCGAGTCTGTGCAATGCTTCGGCCGGAAGAAGACGGCTGTCGCTGTGACGTACTGCAAACGCGGCCGGGGCTTAATCAAGATCAATGGCTGCCCAATTGAGCTTGTCGAGCCAGAGATCTTGCGATTCAAGGCCTACGAACCCATCCTCCTCCTCGGCCGCCATCGTTTCTCCGGCGTCGACATGCGAATCAGAGTCAAAGGCGGAGGCCACACCTCGCAGATCTATGCTATCCGTCAGAGCATTGCCAAGGCTCTTGTCGCCTTCTACCAGAAGTACGTCGACGAACAGAGCAAGAAGGAGATTAAGGACATTCTCGTCCGCTACGATCGGACTTTGCTCGTCGCCGATCCCAGGCGCTGCGAGCCGAAGAAGTTTGGTGGTCGTGGAGCTCGTGCTAGGTTTCAGAAATCATATCGTTGA

mRNA sequence

ATGGCGGCTTCAATCGAGTCTGTGCAATGCTTCGGCCGGAAGAAGACGGCTGTCGCTGTGACGTACTGCAAACGCGGCCGGGGCTTAATCAAGATCAATGGCTGCCCAATTGAGCTTGTCGAGCCAGAGATCTTGCGATTCAAGGCCTACGAACCCATCCTCCTCCTCGGCCGCCATCGTTTCTCCGGCGTCGACATGCGAATCAGAGTCAAAGGCGGAGGCCACACCTCGCAGATCTATGCTATCCGTCAGAGCATTGCCAAGGCTCTTGTCGCCTTCTACCAGAAGTACGTCGACGAACAGAGCAAGAAGGAGATTAAGGACATTCTCGTCCGCTACGATCGGACTTTGCTCGTCGCCGATCCCAGGCGCTGCGAGCCGAAGAAGTTTGGTGGTCGTGGAGCTCGTGCTAGGTTTCAGAAATCATATCGTTGA

Coding sequence (CDS)

ATGGCGGCTTCAATCGAGTCTGTGCAATGCTTCGGCCGGAAGAAGACGGCTGTCGCTGTGACGTACTGCAAACGCGGCCGGGGCTTAATCAAGATCAATGGCTGCCCAATTGAGCTTGTCGAGCCAGAGATCTTGCGATTCAAGGCCTACGAACCCATCCTCCTCCTCGGCCGCCATCGTTTCTCCGGCGTCGACATGCGAATCAGAGTCAAAGGCGGAGGCCACACCTCGCAGATCTATGCTATCCGTCAGAGCATTGCCAAGGCTCTTGTCGCCTTCTACCAGAAGTACGTCGACGAACAGAGCAAGAAGGAGATTAAGGACATTCTCGTCCGCTACGATCGGACTTTGCTCGTCGCCGATCCCAGGCGCTGCGAGCCGAAGAAGTTTGGTGGTCGTGGAGCTCGTGCTAGGTTTCAGAAATCATATCGTTGA

Protein sequence

MAASIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR

Homology

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BLAST of Carg08179 vs. NCBI nr
Match: XP_022922707.1 (40S ribosomal protein S16 [Cucurbita moschata] >XP_022983252.1 40S ribosomal protein S16 [Cucurbita maxima] >XP_022984711.1 40S ribosomal protein S16 [Cucurbita maxima] >XP_023533765.1 40S ribosomal protein S16 [Cucurbita pepo subsp. pepo] >XP_023529226.1 40S ribosomal protein S16 [Cucurbita pepo subsp. pepo] >XP_023552530.1 40S ribosomal protein S16 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 289.3 bits (739), Expect = 7.3e-75
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0


Query: 1   MAASIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60
           MAASIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR
Sbjct: 1   MAASIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60

Query: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120
           FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA
Sbjct: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120

Query: 121 DPRRCEPKKFGGRGARARFQKSYR 145
           DPRRCEPKKFGGRGARARFQKSYR
Sbjct: 121 DPRRCEPKKFGGRGARARFQKSYR 144

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BLAST of Carg08179 vs. NCBI nr
Match: XP_022942745.1 (40S ribosomal protein S16-like [Cucurbita moschata])

HSP 1 Score: 288.5 bits (737), Expect = 1.3e-74
Identity = 143/144 (99.31%), Postives = 144/144 (100.00%), Query Frame = 0


Query: 1   MAASIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60
           MAASIESVQCFGRKKTAVAVTYCKRGRG+IKINGCPIELVEPEILRFKAYEPILLLGRHR
Sbjct: 1   MAASIESVQCFGRKKTAVAVTYCKRGRGIIKINGCPIELVEPEILRFKAYEPILLLGRHR 60

Query: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120
           FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA
Sbjct: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120

Query: 121 DPRRCEPKKFGGRGARARFQKSYR 145
           DPRRCEPKKFGGRGARARFQKSYR
Sbjct: 121 DPRRCEPKKFGGRGARARFQKSYR 144

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BLAST of Carg08179 vs. NCBI nr
Match: XP_004136973.1 (PREDICTED: 40S ribosomal protein S16 [Cucumis sativus] >XP_004140706.1 PREDICTED: 40S ribosomal protein S16 [Cucumis sativus] >XP_004149967.1 PREDICTED: 40S ribosomal protein S16 [Cucumis sativus] >XP_008454961.1 PREDICTED: 40S ribosomal protein S16 [Cucumis melo] >XP_008456099.1 PREDICTED: 40S ribosomal protein S16 [Cucumis melo] >XP_008456141.1 PREDICTED: 40S ribosomal protein S16 [Cucumis melo] >XP_022136342.1 40S ribosomal protein S16 [Momordica charantia] >XP_022149129.1 40S ribosomal protein S16 [Momordica charantia] >XP_022943042.1 40S ribosomal protein S16-like [Cucurbita moschata] >XP_022943043.1 40S ribosomal protein S16-like [Cucurbita moschata] >XP_022952362.1 40S ribosomal protein S16-like [Cucurbita moschata] >XP_022927908.1 40S ribosomal protein S16-like [Cucurbita moschata] >XP_022983243.1 40S ribosomal protein S16-like [Cucurbita maxima] >XP_022972375.1 40S ribosomal protein S16-like [Cucurbita maxima] >XP_023535994.1 40S ribosomal protein S16-like [Cucurbita pepo subsp. pepo] >XP_023553863.1 40S ribosomal protein S16-like [Cucurbita pepo subsp. pepo] >KGN43920.1 hypothetical protein Csa_7G073560 [Cucumis sativus] >KGN57515.1 hypothetical protein Csa_3G202730 [Cucumis sativus] >KGN57574.1 hypothetical protein Csa_3G215620 [Cucumis sativus])

HSP 1 Score: 287.3 bits (734), Expect = 2.8e-74
Identity = 143/144 (99.31%), Postives = 143/144 (99.31%), Query Frame = 0


Query: 1   MAASIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60
           MAA IESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR
Sbjct: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60

Query: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120
           FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA
Sbjct: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120

Query: 121 DPRRCEPKKFGGRGARARFQKSYR 145
           DPRRCEPKKFGGRGARARFQKSYR
Sbjct: 121 DPRRCEPKKFGGRGARARFQKSYR 144

[Close]

BLAST of Carg08179 vs. NCBI nr
Match: XP_022149351.1 (40S ribosomal protein S16-like [Momordica charantia])

HSP 1 Score: 287.0 bits (733), Expect = 3.6e-74
Identity = 142/144 (98.61%), Postives = 143/144 (99.31%), Query Frame = 0


Query: 1   MAASIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60
           MAA IESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIEL+EPEILRFKAYEPILLLGRHR
Sbjct: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELIEPEILRFKAYEPILLLGRHR 60

Query: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120
           FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA
Sbjct: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120

Query: 121 DPRRCEPKKFGGRGARARFQKSYR 145
           DPRRCEPKKFGGRGARARFQKSYR
Sbjct: 121 DPRRCEPKKFGGRGARARFQKSYR 144

[Close]

BLAST of Carg08179 vs. NCBI nr
Match: XP_022989000.1 (40S ribosomal protein S16-like [Cucurbita maxima])

HSP 1 Score: 286.2 bits (731), Expect = 6.2e-74
Identity = 142/144 (98.61%), Postives = 143/144 (99.31%), Query Frame = 0


Query: 1   MAASIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60
           MA+ IESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR
Sbjct: 1   MASPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60

Query: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120
           FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA
Sbjct: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120

Query: 121 DPRRCEPKKFGGRGARARFQKSYR 145
           DPRRCEPKKFGGRGARARFQKSYR
Sbjct: 121 DPRRCEPKKFGGRGARARFQKSYR 144

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BLAST of Carg08179 vs. TAIR10
Match: AT2G09990.1 (Ribosomal protein S5 domain 2-like superfamily protein)

HSP 1 Score: 260.0 bits (663), Expect = 8.7e-70
Identity = 124/139 (89.21%), Postives = 135/139 (97.12%), Query Frame = 0


Query: 6   ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFSGVD 65
           ESVQCFGRKKTAVAVT+CKRG GLIK+NGCPIEL +PEILRFK +EPILLLG+HRF+GV+
Sbjct: 8   ESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPILLLGKHRFAGVN 67

Query: 66  MRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 125
           MRIRV GGGHTSQ+YAIRQSIAKALVA+YQKYVDEQSKKEIKDILVRYDRTLLVADPRRC
Sbjct: 68  MRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 127

Query: 126 EPKKFGGRGARARFQKSYR 145
           EPKKFGGRGAR+R+QKSYR
Sbjct: 128 EPKKFGGRGARSRYQKSYR 146

[Close]

BLAST of Carg08179 vs. TAIR10
Match: AT5G18380.1 (Ribosomal protein S5 domain 2-like superfamily protein)

HSP 1 Score: 259.6 bits (662), Expect = 1.1e-69
Identity = 123/139 (88.49%), Postives = 135/139 (97.12%), Query Frame = 0


Query: 6   ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFSGVD 65
           ESVQCFGRKKTAVAVT+CKRG GLIK+NGCPIEL +PEILRFK +EP+LLLG+HRF+GV+
Sbjct: 8   ESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPVLLLGKHRFAGVN 67

Query: 66  MRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 125
           MRIRV GGGHTSQ+YAIRQSIAKALVA+YQKYVDEQSKKEIKDILVRYDRTLLVADPRRC
Sbjct: 68  MRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 127

Query: 126 EPKKFGGRGARARFQKSYR 145
           EPKKFGGRGAR+R+QKSYR
Sbjct: 128 EPKKFGGRGARSRYQKSYR 146

[Close]

BLAST of Carg08179 vs. TAIR10
Match: AT3G04230.1 (Ribosomal protein S5 domain 2-like superfamily protein)

HSP 1 Score: 246.5 bits (628), Expect = 9.9e-66
Identity = 118/139 (84.89%), Postives = 130/139 (93.53%), Query Frame = 0


Query: 6   ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFSGVD 65
           ESVQCFGRKKTA AVTYCKRG G+IK+NG PIEL +PEILRFK +EP+LLLG+HRF+GVD
Sbjct: 8   ESVQCFGRKKTATAVTYCKRGSGMIKLNGSPIELYQPEILRFKIFEPVLLLGKHRFAGVD 67

Query: 66  MRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 125
           MRIR  GGG+TS++YAIRQSIAKALVA+YQKYVDEQSKKEIKDIL+RYDRTLLVADPRRC
Sbjct: 68  MRIRATGGGNTSRVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILMRYDRTLLVADPRRC 127

Query: 126 EPKKFGGRGARARFQKSYR 145
           E KKFGG GARARFQKSYR
Sbjct: 128 ESKKFGGPGARARFQKSYR 146

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BLAST of Carg08179 vs. Swiss-Prot
Match: sp|P46293|RS16_GOSHI (40S ribosomal protein S16 OS=Gossypium hirsutum OX=3635 GN=RPS16 PE=2 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 5.2e-72
Identity = 135/141 (95.74%), Postives = 138/141 (97.87%), Query Frame = 0


Query: 4   SIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFSG 63
           +IESVQCFGRKKTAVAVT+CKRGRGLIKINGCPIELVEPEILRFKA EPILLLGR RF+G
Sbjct: 5   AIESVQCFGRKKTAVAVTHCKRGRGLIKINGCPIELVEPEILRFKAVEPILLLGRQRFTG 64

Query: 64  VDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPR 123
           VDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILV YDRTLLVADPR
Sbjct: 65  VDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVGYDRTLLVADPR 124

Query: 124 RCEPKKFGGRGARARFQKSYR 145
           RCEPKKFGGRGARARFQKSYR
Sbjct: 125 RCEPKKFGGRGARARFQKSYR 145

[Close]

BLAST of Carg08179 vs. Swiss-Prot
Match: sp|Q9SK22|RS161_ARATH (40S ribosomal protein S16-1 OS=Arabidopsis thaliana OX=3702 GN=RPS16A PE=2 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 1.6e-68
Identity = 124/139 (89.21%), Postives = 135/139 (97.12%), Query Frame = 0


Query: 6   ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFSGVD 65
           ESVQCFGRKKTAVAVT+CKRG GLIK+NGCPIEL +PEILRFK +EPILLLG+HRF+GV+
Sbjct: 8   ESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPILLLGKHRFAGVN 67

Query: 66  MRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 125
           MRIRV GGGHTSQ+YAIRQSIAKALVA+YQKYVDEQSKKEIKDILVRYDRTLLVADPRRC
Sbjct: 68  MRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 127

Query: 126 EPKKFGGRGARARFQKSYR 145
           EPKKFGGRGAR+R+QKSYR
Sbjct: 128 EPKKFGGRGARSRYQKSYR 146

[Close]

BLAST of Carg08179 vs. Swiss-Prot
Match: sp|Q42340|RS163_ARATH (40S ribosomal protein S16-3 OS=Arabidopsis thaliana OX=3702 GN=RPS16C PE=2 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 2.0e-68
Identity = 123/139 (88.49%), Postives = 135/139 (97.12%), Query Frame = 0


Query: 6   ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFSGVD 65
           ESVQCFGRKKTAVAVT+CKRG GLIK+NGCPIEL +PEILRFK +EP+LLLG+HRF+GV+
Sbjct: 8   ESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPVLLLGKHRFAGVN 67

Query: 66  MRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 125
           MRIRV GGGHTSQ+YAIRQSIAKALVA+YQKYVDEQSKKEIKDILVRYDRTLLVADPRRC
Sbjct: 68  MRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 127

Query: 126 EPKKFGGRGARARFQKSYR 145
           EPKKFGGRGAR+R+QKSYR
Sbjct: 128 EPKKFGGRGARSRYQKSYR 146

[Close]

BLAST of Carg08179 vs. Swiss-Prot
Match: sp|O22647|RS16_FRIAG (40S ribosomal protein S16 OS=Fritillaria agrestis OX=64177 GN=RPS16 PE=2 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 2.7e-68
Identity = 125/139 (89.93%), Postives = 136/139 (97.84%), Query Frame = 0


Query: 6   ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFSGVD 65
           ESVQCFGRKKTAVAVT+CKRGRGLIK+NG PIELV+PEILR+KA+EPILLLGRHRF GVD
Sbjct: 7   ESVQCFGRKKTAVAVTHCKRGRGLIKVNGSPIELVKPEILRYKAFEPILLLGRHRFVGVD 66

Query: 66  MRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 125
           MRIRV+GGG TSQIYAIRQSIAKALVA+YQKYVDEQ+KKE+KDIL+RYDRTLLVADPRRC
Sbjct: 67  MRIRVRGGGKTSQIYAIRQSIAKALVAYYQKYVDEQAKKEVKDILMRYDRTLLVADPRRC 126

Query: 126 EPKKFGGRGARARFQKSYR 145
           EPKKFGGRGAR+RFQKSYR
Sbjct: 127 EPKKFGGRGARSRFQKSYR 145

[Close]

BLAST of Carg08179 vs. Swiss-Prot
Match: sp|Q9XEK7|RS16_TORRU (40S ribosomal protein S16 OS=Tortula ruralis OX=38588 GN=RPS16 PE=2 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 7.3e-66
Identity = 122/142 (85.92%), Postives = 138/142 (97.18%), Query Frame = 0


Query: 3   ASIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFS 62
           A++ESVQCFGRKKTAVAVTYC+RGRGLI++   PIELVEPEILR+KA+EP+LLLGR +F+
Sbjct: 2   AAVESVQCFGRKKTAVAVTYCRRGRGLIRLT-VPIELVEPEILRYKAFEPVLLLGRSKFA 61

Query: 63  GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADP 122
           GVDMRIRVKGGG+TSQIYAIRQSIAKALVA++QKYVDEQSKKEIKD+L+RYDRTLLVADP
Sbjct: 62  GVDMRIRVKGGGNTSQIYAIRQSIAKALVAYFQKYVDEQSKKEIKDVLLRYDRTLLVADP 121

Query: 123 RRCEPKKFGGRGARARFQKSYR 145
           RRCEPKKFGGRGAR+RFQKSYR
Sbjct: 122 RRCEPKKFGGRGARSRFQKSYR 142

[Close]

BLAST of Carg08179 vs. TrEMBL
Match: tr|A0A0A0L6F6|A0A0A0L6F6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G202730 PE=3 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 1.8e-74
Identity = 143/144 (99.31%), Postives = 143/144 (99.31%), Query Frame = 0


Query: 1   MAASIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60
           MAA IESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR
Sbjct: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60

Query: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120
           FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA
Sbjct: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120

Query: 121 DPRRCEPKKFGGRGARARFQKSYR 145
           DPRRCEPKKFGGRGARARFQKSYR
Sbjct: 121 DPRRCEPKKFGGRGARARFQKSYR 144

[Close]

BLAST of Carg08179 vs. TrEMBL
Match: tr|A0A1S3C210|A0A1S3C210_CUCME (40S ribosomal protein S16 OS=Cucumis melo OX=3656 GN=LOC103496134 PE=3 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 1.8e-74
Identity = 143/144 (99.31%), Postives = 143/144 (99.31%), Query Frame = 0


Query: 1   MAASIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60
           MAA IESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR
Sbjct: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60

Query: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120
           FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA
Sbjct: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120

Query: 121 DPRRCEPKKFGGRGARARFQKSYR 145
           DPRRCEPKKFGGRGARARFQKSYR
Sbjct: 121 DPRRCEPKKFGGRGARARFQKSYR 144

[Close]

BLAST of Carg08179 vs. TrEMBL
Match: tr|A0A067L229|A0A067L229_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_00289 PE=3 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 1.6e-73
Identity = 141/143 (98.60%), Postives = 142/143 (99.30%), Query Frame = 0


Query: 2   AASIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF 61
           AA IESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF
Sbjct: 3   AAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF 62

Query: 62  SGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD 121
           +GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD
Sbjct: 63  AGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD 122

Query: 122 PRRCEPKKFGGRGARARFQKSYR 145
           PRRCEPKKFGGRGARARFQKSYR
Sbjct: 123 PRRCEPKKFGGRGARARFQKSYR 145

[Close]

BLAST of Carg08179 vs. TrEMBL
Match: tr|I3NMP6|I3NMP6_HEVBR (40S ribosomal protein S16A OS=Hevea brasiliensis OX=3981 GN=RPS16A PE=2 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 1.6e-73
Identity = 141/143 (98.60%), Postives = 142/143 (99.30%), Query Frame = 0


Query: 2   AASIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF 61
           AA IESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF
Sbjct: 5   AAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF 64

Query: 62  SGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD 121
           +GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD
Sbjct: 65  AGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD 124

Query: 122 PRRCEPKKFGGRGARARFQKSYR 145
           PRRCEPKKFGGRGARARFQKSYR
Sbjct: 125 PRRCEPKKFGGRGARARFQKSYR 147

[Close]

BLAST of Carg08179 vs. TrEMBL
Match: tr|A0A2C9V586|A0A2C9V586_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_10G109900 PE=3 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 1.6e-73
Identity = 141/143 (98.60%), Postives = 142/143 (99.30%), Query Frame = 0


Query: 2   AASIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF 61
           AA IESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF
Sbjct: 5   AAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF 64

Query: 62  SGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD 121
           +GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD
Sbjct: 65  AGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD 124

Query: 122 PRRCEPKKFGGRGARARFQKSYR 145
           PRRCEPKKFGGRGARARFQKSYR
Sbjct: 125 PRRCEPKKFGGRGARARFQKSYR 147

The following BLAST results are available for this feature:

BLAST of Carg08179 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022922707.1	7.3e-75	100.00	40S ribosomal protein S16 [Cucurbita moschata] >XP_022983252.1 40S ribosomal pro...	[more]
XP_022942745.1	1.3e-74	99.31	40S ribosomal protein S16-like [Cucurbita moschata]	[more]
XP_004136973.1	2.8e-74	99.31	PREDICTED: 40S ribosomal protein S16 [Cucumis sativus] >XP_004140706.1 PREDICTED...	[more]
XP_022149351.1	3.6e-74	98.61	40S ribosomal protein S16-like [Momordica charantia]	[more]
XP_022989000.1	6.2e-74	98.61	40S ribosomal protein S16-like [Cucurbita maxima]	[more]

BLAST of Carg08179 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G09990.1	8.7e-70	89.21	Ribosomal protein S5 domain 2-like superfamily protein	[more]
AT5G18380.1	1.1e-69	88.49	Ribosomal protein S5 domain 2-like superfamily protein	[more]
AT3G04230.1	9.9e-66	84.89	Ribosomal protein S5 domain 2-like superfamily protein	[more]

BLAST of Carg08179 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P46293\|RS16_GOSHI	5.2e-72	95.74	40S ribosomal protein S16 OS=Gossypium hirsutum OX=3635 GN=RPS16 PE=2 SV=1	[more]
sp\|Q9SK22\|RS161_ARATH	1.6e-68	89.21	40S ribosomal protein S16-1 OS=Arabidopsis thaliana OX=3702 GN=RPS16A PE=2 SV=1	[more]
sp\|Q42340\|RS163_ARATH	2.0e-68	88.49	40S ribosomal protein S16-3 OS=Arabidopsis thaliana OX=3702 GN=RPS16C PE=2 SV=1	[more]
sp\|O22647\|RS16_FRIAG	2.7e-68	89.93	40S ribosomal protein S16 OS=Fritillaria agrestis OX=64177 GN=RPS16 PE=2 SV=1	[more]
sp\|Q9XEK7\|RS16_TORRU	7.3e-66	85.92	40S ribosomal protein S16 OS=Tortula ruralis OX=38588 GN=RPS16 PE=2 SV=1	[more]

BLAST of Carg08179 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L6F6\|A0A0A0L6F6_CUCSA	1.8e-74	99.31	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G202730 PE=3 SV=1	[more]
tr\|A0A1S3C210\|A0A1S3C210_CUCME	1.8e-74	99.31	40S ribosomal protein S16 OS=Cucumis melo OX=3656 GN=LOC103496134 PE=3 SV=1	[more]
tr\|A0A067L229\|A0A067L229_JATCU	1.6e-73	98.60	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_00289 PE=3 SV=1	[more]
tr\|I3NMP6\|I3NMP6_HEVBR	1.6e-73	98.60	40S ribosomal protein S16A OS=Hevea brasiliensis OX=3981 GN=RPS16A PE=2 SV=1	[more]
tr\|A0A2C9V586\|A0A2C9V586_MANES	1.6e-73	98.60	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_10G109900 PE=3 SV=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **INTERPRO**
Term	Definition
IPR020568	Ribosomal_S5_D2-typ_fold
IPR020574	Ribosomal_S9_CS
IPR000754	Ribosomal_S9
IPR014721	Ribosomal_S5_D2-typ_fold_subgr

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg08179-RA	Carg08179-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014721	Ribosomal protein S5 domain 2-type fold, subgroup	GENE3D	G3DSA:3.30.230.10		coord: 2..144 e-value: 3.7E-70 score: 236.6
IPR000754	Ribosomal protein S9	PFAM	PF00380	Ribosomal_S9	coord: 12..144 e-value: 9.7E-32 score: 110.0
IPR000754	Ribosomal protein S9	PANTHER	PTHR21569	RIBOSOMAL PROTEIN S9	coord: 6..144
None	No IPR available	PANTHER	PTHR21569:SF7	SUBFAMILY NOT NAMED	coord: 6..144
IPR020574	Ribosomal protein S9, conserved site	PROSITE	PS00360	RIBOSOMAL_S9	coord: 72..90
IPR020568	Ribosomal protein S5 domain 2-type fold	SUPERFAMILY	SSF54211	Ribosomal protein S5 domain 2-like	coord: 7..144

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg08179	Cla013050	Watermelon (97103) v1	carwmB0371
Carg08179	Cla013082	Watermelon (97103) v1	carwmB0370
Carg08179	MELO3C019524	Melon (DHL92) v3.5.1	carmeB0379
Carg08179	MELO3C019490	Melon (DHL92) v3.5.1	carmeB0380
Carg08179	ClCG05G010150	Watermelon (Charleston Gray)	carwcgB0369
Carg08179	ClCG05G009810	Watermelon (Charleston Gray)	carwcgB0370
Carg08179	CmaCh04G005100	Cucurbita maxima (Rimu)	carcmaB0529
Carg08179	CmoCh04G005490	Cucurbita moschata (Rifu)	carcmoB0514
Carg08179	Cp4.1LG01g01990	Cucurbita pepo (Zucchini)	carcpeB0527
Carg08179	MELO3C019490.2	Melon (DHL92) v3.6.1	carmedB0384
Carg08179	Cla97C05G092540	Watermelon (97103) v2	carwmbB0395
Carg08179	Cla97C05G092200	Watermelon (97103) v2	carwmbB0396
Carg08179	Bhi01G001267	Wax gourd	carwgoB0458
Carg08179	Bhi01G001237	Wax gourd	carwgoB0459

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg08179	Silver-seed gourd	carcarB403
Carg08179	Cucumber (Gy14) v2	carcgybB0380
Carg08179	Cucurbita maxima (Rimu)	carcmaB0526
Carg08179	Cucurbita moschata (Rifu)	carcmoB0509
Carg08179	Cucurbita pepo (Zucchini)	carcpeB0523
Carg08179	Wild cucumber (PI 183967)	carcpiB0405
Carg08179	Cucumber (Chinese Long) v2	carcuB0400
Carg08179	Cucumber (Chinese Long) v3	carcucB0403
Carg08179	Bottle gourd (USVL1VR-Ls)	carlsiB346