ClCG05G009810 (gene) Watermelon (Charleston Gray)

Overview
NameClCG05G009810
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
Description40S ribosomal protein S16
LocationCG_Chr05 : 10864253 .. 10864687 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGCTCCAATCGAGTCTGTGCAATGCTTCGGCCGGAAGAAGACGGCAGTCGCTGTGACATACTGCAAGCGTGGCCGAGGCTTGATCAAGATCAATGGCTGCCCAATCGAGCTCGTTGAACCTGAGATCTTGCGCTTCAAGGCCTACGAACCCATCCTCCTCCTCGGCCGCCATCGCTTCTCCGGCGTCGACATGCGAATCAGAGTCAAAGGCGGAGGCCACACCTCACAGATCTACGCCATCCGCCAGAGCATCGCTAAGGCTCTCGTCGCCTTTTACCAGAAGTACGTCGACGAACAGAGCAAGAAGGAGATCAAGGACATCCTCGTCCGCTACGATCGGACTTTGCTCGTCGCTGATCCCAGACGCTGTGAGCCGAAGAAGTTTGGTGGTCGTGGAGCTCGTGCTAGATTCCAGAAATCTTATCGTTGA

mRNA sequence

ATGGCGGCTCCAATCGAGTCTGTGCAATGCTTCGGCCGGAAGAAGACGGCAGTCGCTGTGACATACTGCAAGCGTGGCCGAGGCTTGATCAAGATCAATGGCTGCCCAATCGAGCTCGTTGAACCTGAGATCTTGCGCTTCAAGGCCTACGAACCCATCCTCCTCCTCGGCCGCCATCGCTTCTCCGGCGTCGACATGCGAATCAGAGTCAAAGGCGGAGGCCACACCTCACAGATCTACGCCATCCGCCAGAGCATCGCTAAGGCTCTCGTCGCCTTTTACCAGAAGTACGTCGACGAACAGAGCAAGAAGGAGATCAAGGACATCCTCGTCCGCTACGATCGGACTTTGCTCGTCGCTGATCCCAGACGCTGTGAGCCGAAGAAGTTTGGTGGTCGTGGAGCTCGTGCTAGATTCCAGAAATCTTATCGTTGA

Coding sequence (CDS)

ATGGCGGCTCCAATCGAGTCTGTGCAATGCTTCGGCCGGAAGAAGACGGCAGTCGCTGTGACATACTGCAAGCGTGGCCGAGGCTTGATCAAGATCAATGGCTGCCCAATCGAGCTCGTTGAACCTGAGATCTTGCGCTTCAAGGCCTACGAACCCATCCTCCTCCTCGGCCGCCATCGCTTCTCCGGCGTCGACATGCGAATCAGAGTCAAAGGCGGAGGCCACACCTCACAGATCTACGCCATCCGCCAGAGCATCGCTAAGGCTCTCGTCGCCTTTTACCAGAAGTACGTCGACGAACAGAGCAAGAAGGAGATCAAGGACATCCTCGTCCGCTACGATCGGACTTTGCTCGTCGCTGATCCCAGACGCTGTGAGCCGAAGAAGTTTGGTGGTCGTGGAGCTCGTGCTAGATTCCAGAAATCTTATCGTTGA

Protein sequence

MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR
Homology
[Close]
BLAST of ClCG05G009810 vs. Swiss-Prot
Match: RS16_GOSHI (40S ribosomal protein S16 OS=Gossypium hirsutum GN=RPS16 PE=2 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 8.7e-72
Identity = 135/140 (96.43%), Postives = 135/140 (96.43%), Query Frame = 1 

Query: 5   IESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFSGV 64
           IESVQCFGRKKTAVAVT+CKRGRGLIKINGCPIELVEPEILRFKA EPILLLGR RF+GV
Sbjct: 6   IESVQCFGRKKTAVAVTHCKRGRGLIKINGCPIELVEPEILRFKAVEPILLLGRQRFTGV 65

Query: 65  DMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRR 124
           DMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILV YDRTLLVADPRR
Sbjct: 66  DMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVGYDRTLLVADPRR 125

Query: 125 CEPKKFGGRGARARFQKSYR 145
           CEPKKFGGRGARARFQKSYR
Sbjct: 126 CEPKKFGGRGARARFQKSYR 145

[Close]
BLAST of ClCG05G009810 vs. Swiss-Prot
Match: RS16_FRIAG (40S ribosomal protein S16 OS=Fritillaria agrestis GN=RPS16 PE=2 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 1.5e-68
Identity = 128/145 (88.28%), Postives = 137/145 (94.48%), Query Frame = 1 

Query: 1   MAAPI-ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRH 60
           MA P  ESVQCFGRKKTAVAVT+CKRGRGLIK+NG PIELV+PEILR+KA+EPILLLGRH
Sbjct: 1   MATPATESVQCFGRKKTAVAVTHCKRGRGLIKVNGSPIELVKPEILRYKAFEPILLLGRH 60

Query: 61  RFSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLV 120
           RF GVDMRIRV+GGG TSQIYAIRQSIAKALVA+YQKYVDEQ+KKE+KDIL+RYDRTLLV
Sbjct: 61  RFVGVDMRIRVRGGGKTSQIYAIRQSIAKALVAYYQKYVDEQAKKEVKDILMRYDRTLLV 120

Query: 121 ADPRRCEPKKFGGRGARARFQKSYR 145
           ADPRRCEPKKFGGRGAR+RFQKSYR
Sbjct: 121 ADPRRCEPKKFGGRGARSRFQKSYR 145

[Close]
BLAST of ClCG05G009810 vs. Swiss-Prot
Match: RS161_ARATH (40S ribosomal protein S16-1 OS=Arabidopsis thaliana GN=RPS16A PE=2 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 2.0e-68
Identity = 124/139 (89.21%), Postives = 133/139 (95.68%), Query Frame = 1 

Query: 6   ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFSGVD 65
           ESVQCFGRKKTAVAVT+CKRG GLIK+NGCPIEL +PEILRFK +EPILLLG+HRF+GV+
Sbjct: 8   ESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPILLLGKHRFAGVN 67

Query: 66  MRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 125
           MRIRV GGGHTSQ+YAIRQSIAKALVA+YQKYVDEQSKKEIKDILVRYDRTLLVADPRRC
Sbjct: 68  MRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 127

Query: 126 EPKKFGGRGARARFQKSYR 145
           EPKKFGGRGAR+R+QKSYR
Sbjct: 128 EPKKFGGRGARSRYQKSYR 146

[Close]
BLAST of ClCG05G009810 vs. Swiss-Prot
Match: RS163_ARATH (40S ribosomal protein S16-3 OS=Arabidopsis thaliana GN=RPS16C PE=2 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 2.6e-68
Identity = 123/139 (88.49%), Postives = 133/139 (95.68%), Query Frame = 1 

Query: 6   ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFSGVD 65
           ESVQCFGRKKTAVAVT+CKRG GLIK+NGCPIEL +PEILRFK +EP+LLLG+HRF+GV+
Sbjct: 8   ESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPVLLLGKHRFAGVN 67

Query: 66  MRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 125
           MRIRV GGGHTSQ+YAIRQSIAKALVA+YQKYVDEQSKKEIKDILVRYDRTLLVADPRRC
Sbjct: 68  MRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 127

Query: 126 EPKKFGGRGARARFQKSYR 145
           EPKKFGGRGAR+R+QKSYR
Sbjct: 128 EPKKFGGRGARSRYQKSYR 146

[Close]
BLAST of ClCG05G009810 vs. Swiss-Prot
Match: RS16_TORRU (40S ribosomal protein S16 OS=Tortula ruralis GN=RPS16 PE=2 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 1.2e-65
Identity = 122/142 (85.92%), Postives = 135/142 (95.07%), Query Frame = 1 

Query: 3   APIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFS 62
           A +ESVQCFGRKKTAVAVTYC+RGRGLI++   PIELVEPEILR+KA+EP+LLLGR +F+
Sbjct: 2   AAVESVQCFGRKKTAVAVTYCRRGRGLIRLT-VPIELVEPEILRYKAFEPVLLLGRSKFA 61

Query: 63  GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADP 122
           GVDMRIRVKGGG+TSQIYAIRQSIAKALVA++QKYVDEQSKKEIKD+L+RYDRTLLVADP
Sbjct: 62  GVDMRIRVKGGGNTSQIYAIRQSIAKALVAYFQKYVDEQSKKEIKDVLLRYDRTLLVADP 121

Query: 123 RRCEPKKFGGRGARARFQKSYR 145
           RRCEPKKFGGRGAR+RFQKSYR
Sbjct: 122 RRCEPKKFGGRGARSRFQKSYR 142

[Close]
BLAST of ClCG05G009810 vs. TrEMBL
Match: A0A0A0L6F6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G202730 PE=3 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 1.2e-75
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 1 

Query: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60
           MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR
Sbjct: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60

Query: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120
           FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA
Sbjct: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120

Query: 121 DPRRCEPKKFGGRGARARFQKSYR 145
           DPRRCEPKKFGGRGARARFQKSYR
Sbjct: 121 DPRRCEPKKFGGRGARARFQKSYR 144

[Close]
BLAST of ClCG05G009810 vs. TrEMBL
Match: I3NMP6_HEVBR (40S ribosomal protein S16A OS=Hevea brasiliensis GN=RPS16A PE=2 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 1.0e-74
Identity = 142/143 (99.30%), Postives = 143/143 (100.00%), Query Frame = 1 

Query: 2   AAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF 61
           AAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF
Sbjct: 5   AAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF 64

Query: 62  SGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD 121
           +GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD
Sbjct: 65  AGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD 124

Query: 122 PRRCEPKKFGGRGARARFQKSYR 145
           PRRCEPKKFGGRGARARFQKSYR
Sbjct: 125 PRRCEPKKFGGRGARARFQKSYR 147

[Close]
BLAST of ClCG05G009810 vs. TrEMBL
Match: A0A067L229_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00289 PE=3 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 1.0e-74
Identity = 142/143 (99.30%), Postives = 143/143 (100.00%), Query Frame = 1 

Query: 2   AAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF 61
           AAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF
Sbjct: 3   AAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF 62

Query: 62  SGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD 121
           +GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD
Sbjct: 63  AGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD 122

Query: 122 PRRCEPKKFGGRGARARFQKSYR 145
           PRRCEPKKFGGRGARARFQKSYR
Sbjct: 123 PRRCEPKKFGGRGARARFQKSYR 145

[Close]
BLAST of ClCG05G009810 vs. TrEMBL
Match: A5ASC2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g02990 PE=3 SV=1)

HSP 1 Score: 286.2 bits (731), Expect = 2.2e-74
Identity = 141/144 (97.92%), Postives = 143/144 (99.31%), Query Frame = 1 

Query: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60
           MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIEL+EPEILR KAYEPILLLGRHR
Sbjct: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELIEPEILRHKAYEPILLLGRHR 60

Query: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120
           F+GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA
Sbjct: 61  FAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120

Query: 121 DPRRCEPKKFGGRGARARFQKSYR 145
           DPRRCEPKKFGGRGARARFQKSYR
Sbjct: 121 DPRRCEPKKFGGRGARARFQKSYR 144

[Close]
BLAST of ClCG05G009810 vs. TrEMBL
Match: G9F9P5_HEVBR (Putative ribosomal protein S9 (Fragment) OS=Hevea brasiliensis PE=2 SV=1)

HSP 1 Score: 286.2 bits (731), Expect = 2.2e-74
Identity = 141/143 (98.60%), Postives = 143/143 (100.00%), Query Frame = 1 

Query: 2   AAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF 61
           +APIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF
Sbjct: 1   SAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF 60

Query: 62  SGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD 121
           +GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD
Sbjct: 61  AGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD 120

Query: 122 PRRCEPKKFGGRGARARFQKSYR 145
           PRRCEPKKFGGRGARARFQKSYR
Sbjct: 121 PRRCEPKKFGGRGARARFQKSYR 143

[Close]
BLAST of ClCG05G009810 vs. TAIR10
Match: AT2G09990.1 (AT2G09990.1 Ribosomal protein S5 domain 2-like superfamily protein)

HSP 1 Score: 259.6 bits (662), Expect = 1.1e-69
Identity = 124/139 (89.21%), Postives = 133/139 (95.68%), Query Frame = 1 

Query: 6   ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFSGVD 65
           ESVQCFGRKKTAVAVT+CKRG GLIK+NGCPIEL +PEILRFK +EPILLLG+HRF+GV+
Sbjct: 8   ESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPILLLGKHRFAGVN 67

Query: 66  MRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 125
           MRIRV GGGHTSQ+YAIRQSIAKALVA+YQKYVDEQSKKEIKDILVRYDRTLLVADPRRC
Sbjct: 68  MRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 127

Query: 126 EPKKFGGRGARARFQKSYR 145
           EPKKFGGRGAR+R+QKSYR
Sbjct: 128 EPKKFGGRGARSRYQKSYR 146

[Close]
BLAST of ClCG05G009810 vs. TAIR10
Match: AT5G18380.1 (AT5G18380.1 Ribosomal protein S5 domain 2-like superfamily protein)

HSP 1 Score: 259.2 bits (661), Expect = 1.5e-69
Identity = 123/139 (88.49%), Postives = 133/139 (95.68%), Query Frame = 1 

Query: 6   ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFSGVD 65
           ESVQCFGRKKTAVAVT+CKRG GLIK+NGCPIEL +PEILRFK +EP+LLLG+HRF+GV+
Sbjct: 8   ESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPVLLLGKHRFAGVN 67

Query: 66  MRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 125
           MRIRV GGGHTSQ+YAIRQSIAKALVA+YQKYVDEQSKKEIKDILVRYDRTLLVADPRRC
Sbjct: 68  MRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 127

Query: 126 EPKKFGGRGARARFQKSYR 145
           EPKKFGGRGAR+R+QKSYR
Sbjct: 128 EPKKFGGRGARSRYQKSYR 146

[Close]
BLAST of ClCG05G009810 vs. TAIR10
Match: AT3G04230.1 (AT3G04230.1 Ribosomal protein S5 domain 2-like superfamily protein)

HSP 1 Score: 246.1 bits (627), Expect = 1.3e-65
Identity = 118/139 (84.89%), Postives = 128/139 (92.09%), Query Frame = 1 

Query: 6   ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFSGVD 65
           ESVQCFGRKKTA AVTYCKRG G+IK+NG PIEL +PEILRFK +EP+LLLG+HRF+GVD
Sbjct: 8   ESVQCFGRKKTATAVTYCKRGSGMIKLNGSPIELYQPEILRFKIFEPVLLLGKHRFAGVD 67

Query: 66  MRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 125
           MRIR  GGG+TS++YAIRQSIAKALVA+YQKYVDEQSKKEIKDIL+RYDRTLLVADPRRC
Sbjct: 68  MRIRATGGGNTSRVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILMRYDRTLLVADPRRC 127

Query: 126 EPKKFGGRGARARFQKSYR 145
           E KKFGG GARARFQKSYR
Sbjct: 128 ESKKFGGPGARARFQKSYR 146

[Close]
BLAST of ClCG05G009810 vs. NCBI nr
Match: gi|449438394|ref|XP_004136973.1| (PREDICTED: 40S ribosomal protein S16 [Cucumis sativus])

HSP 1 Score: 290.4 bits (742), Expect = 1.7e-75
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 1 

Query: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60
           MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR
Sbjct: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60

Query: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120
           FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA
Sbjct: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120

Query: 121 DPRRCEPKKFGGRGARARFQKSYR 145
           DPRRCEPKKFGGRGARARFQKSYR
Sbjct: 121 DPRRCEPKKFGGRGARARFQKSYR 144

[Close]
BLAST of ClCG05G009810 vs. NCBI nr
Match: gi|802563143|ref|XP_012066736.1| (PREDICTED: 40S ribosomal protein S16 [Jatropha curcas])

HSP 1 Score: 287.3 bits (734), Expect = 1.4e-74
Identity = 142/143 (99.30%), Postives = 143/143 (100.00%), Query Frame = 1 

Query: 2   AAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF 61
           AAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF
Sbjct: 3   AAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF 62

Query: 62  SGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD 121
           +GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD
Sbjct: 63  AGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD 122

Query: 122 PRRCEPKKFGGRGARARFQKSYR 145
           PRRCEPKKFGGRGARARFQKSYR
Sbjct: 123 PRRCEPKKFGGRGARARFQKSYR 145

[Close]
BLAST of ClCG05G009810 vs. NCBI nr
Match: gi|313586545|gb|ADR71283.1| (40S ribosomal protein S16A [Hevea brasiliensis])

HSP 1 Score: 287.3 bits (734), Expect = 1.4e-74
Identity = 142/143 (99.30%), Postives = 143/143 (100.00%), Query Frame = 1 

Query: 2   AAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF 61
           AAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF
Sbjct: 5   AAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF 64

Query: 62  SGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD 121
           +GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD
Sbjct: 65  AGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD 124

Query: 122 PRRCEPKKFGGRGARARFQKSYR 145
           PRRCEPKKFGGRGARARFQKSYR
Sbjct: 125 PRRCEPKKFGGRGARARFQKSYR 147

[Close]
BLAST of ClCG05G009810 vs. NCBI nr
Match: gi|225432586|ref|XP_002281350.1| (PREDICTED: 40S ribosomal protein S16 [Vitis vinifera])

HSP 1 Score: 286.2 bits (731), Expect = 3.2e-74
Identity = 141/144 (97.92%), Postives = 143/144 (99.31%), Query Frame = 1 

Query: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60
           MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIEL+EPEILR KAYEPILLLGRHR
Sbjct: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELIEPEILRHKAYEPILLLGRHR 60

Query: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120
           F+GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA
Sbjct: 61  FAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120

Query: 121 DPRRCEPKKFGGRGARARFQKSYR 145
           DPRRCEPKKFGGRGARARFQKSYR
Sbjct: 121 DPRRCEPKKFGGRGARARFQKSYR 144

[Close]
BLAST of ClCG05G009810 vs. NCBI nr
Match: gi|590657854|ref|XP_007034683.1| (Ribosomal protein S5 domain 2-like superfamily protein [Theobroma cacao])

HSP 1 Score: 286.2 bits (731), Expect = 3.2e-74
Identity = 140/144 (97.22%), Postives = 144/144 (100.00%), Query Frame = 1 

Query: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60
           MAAP+ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILR+KAYEPILLLGRHR
Sbjct: 1   MAAPVESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRYKAYEPILLLGRHR 60

Query: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120
           F+GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQK+VDEQSKKEIKDILVRYDRTLLVA
Sbjct: 61  FAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKFVDEQSKKEIKDILVRYDRTLLVA 120

Query: 121 DPRRCEPKKFGGRGARARFQKSYR 145
           DPRRCEPKKFGGRGARARFQKSYR
Sbjct: 121 DPRRCEPKKFGGRGARARFQKSYR 144

The following BLAST results are available for this feature:
BLAST of ClCG05G009810 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RS16_GOSHI8.7e-7296.4340S ribosomal protein S16 OS=Gossypium hirsutum GN=RPS16 PE=2 SV=1[more]
RS16_FRIAG1.5e-6888.2840S ribosomal protein S16 OS=Fritillaria agrestis GN=RPS16 PE=2 SV=1[more]
RS161_ARATH2.0e-6889.2140S ribosomal protein S16-1 OS=Arabidopsis thaliana GN=RPS16A PE=2 SV=1[more]
RS163_ARATH2.6e-6888.4940S ribosomal protein S16-3 OS=Arabidopsis thaliana GN=RPS16C PE=2 SV=1[more]
RS16_TORRU1.2e-6585.9240S ribosomal protein S16 OS=Tortula ruralis GN=RPS16 PE=2 SV=1[more]
BLAST of ClCG05G009810 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L6F6_CUCSA1.2e-75100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G202730 PE=3 SV=1[more]
I3NMP6_HEVBR1.0e-7499.3040S ribosomal protein S16A OS=Hevea brasiliensis GN=RPS16A PE=2 SV=1[more]
A0A067L229_JATCU1.0e-7499.30Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00289 PE=3 SV=1[more]
A5ASC2_VITVI2.2e-7497.92Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g02990 PE=3 SV=... [more]
G9F9P5_HEVBR2.2e-7498.60Putative ribosomal protein S9 (Fragment) OS=Hevea brasiliensis PE=2 SV=1[more]
BLAST of ClCG05G009810 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G09990.11.1e-6989.21 Ribosomal protein S5 domain 2-like superfamily protein[more]
AT5G18380.11.5e-6988.49 Ribosomal protein S5 domain 2-like superfamily protein[more]
AT3G04230.11.3e-6584.89 Ribosomal protein S5 domain 2-like superfamily protein[more]
BLAST of ClCG05G009810 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449438394|ref|XP_004136973.1|1.7e-75100.00PREDICTED: 40S ribosomal protein S16 [Cucumis sativus][more]
gi|802563143|ref|XP_012066736.1|1.4e-7499.30PREDICTED: 40S ribosomal protein S16 [Jatropha curcas][more]
gi|313586545|gb|ADR71283.1|1.4e-7499.3040S ribosomal protein S16A [Hevea brasiliensis][more]
gi|225432586|ref|XP_002281350.1|3.2e-7497.92PREDICTED: 40S ribosomal protein S16 [Vitis vinifera][more]
gi|590657854|ref|XP_007034683.1|3.2e-7497.22Ribosomal protein S5 domain 2-like superfamily protein [Theobroma cacao][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000754Ribosomal_S9
IPR014721Ribosomal_S5_D2-typ_fold_subgr
IPR020568Ribosomal_S5_D2-typ_fold
IPR020574Ribosomal_S9_CS
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
biological_process GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
cellular_component GO:0005840 ribosome
cellular_component GO:0005829 cytosol
cellular_component GO:0022627 cytosolic small ribosomal subunit
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0003723 RNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG05G009810.1ClCG05G009810.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000754Ribosomal protein S9PANTHERPTHR21569RIBOSOMAL PROTEIN S9coord: 1..144
score: 2.8E
IPR000754Ribosomal protein S9PFAMPF00380Ribosomal_S9coord: 12..144
score: 1.8
IPR014721Ribosomal protein S5 domain 2-type fold, subgroupGENE3DG3DSA:3.30.230.10coord: 7..144
score: 2.0
IPR020568Ribosomal protein S5 domain 2-type foldunknownSSF54211Ribosomal protein S5 domain 2-likecoord: 7..144
score: 1.25
IPR020574Ribosomal protein S9, conserved sitePROSITEPS00360RIBOSOMAL_S9coord: 72..90
scor
NoneNo IPR availablePANTHERPTHR21569:SF6SUBFAMILY NOT NAMEDcoord: 1..144
score: 2.8E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG05G009810Csa3G215620Cucumber (Chinese Long) v2cuwcgB224
ClCG05G009810MELO3C019490Melon (DHL92) v3.5.1mewcgB427
ClCG05G009810Cla013050Watermelon (97103) v1wcgwmB286
ClCG05G009810Cla97C05G092200Watermelon (97103) v2wcgwmbB229
ClCG05G009810Bhi01G001237Wax gourdwcgwgoB427
ClCG05G009810CSPI03G18880Wild cucumber (PI 183967)cpiwcgB228
ClCG05G009810CmaCh04G005100Cucurbita maxima (Rimu)cmawcgB659
ClCG05G009810CmoCh04G005490Cucurbita moschata (Rifu)cmowcgB660
ClCG05G009810CmoCh04G005160Cucurbita moschata (Rifu)cmowcgB658
ClCG05G009810Cp4.1LG01g02420Cucurbita pepo (Zucchini)cpewcgB392
ClCG05G009810Cp4.1LG01g01990Cucurbita pepo (Zucchini)cpewcgB394
ClCG05G009810CsGy3G018760Cucumber (Gy14) v2cgybwcgB206
ClCG05G009810MELO3C019490.2Melon (DHL92) v3.6.1medwcgB417
ClCG05G009810Carg08179Silver-seed gourdcarwcgB0370
ClCG05G009810Carg08151Silver-seed gourdcarwcgB0369
ClCG05G009810CsaV3_3G018990Cucumber (Chinese Long) v3cucwcgB228
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG05G009810Cucumber (Gy14) v2cgybwcgB214
ClCG05G009810Silver-seed gourdcarwcgB0636
ClCG05G009810Cucumber (Chinese Long) v3cucwcgB238
ClCG05G009810Cucurbita maxima (Rimu)cmawcgB297
ClCG05G009810Cucurbita moschata (Rifu)cmowcgB291
ClCG05G009810Wild cucumber (PI 183967)cpiwcgB237
ClCG05G009810Cucumber (Chinese Long) v2cuwcgB230
ClCG05G009810Cucurbita pepo (Zucchini)cpewcgB208
ClCG05G009810Bottle gourd (USVL1VR-Ls)lsiwcgB332