CSPI03G18880 (gene) Wild cucumber (PI 183967)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATTTTGGTTAAGTTATGCTTATTTTATTTCATTTTAAATTTAGCATTTCAAATTGTGTGCATTTTCGACGACTACAAAAACCTTTTTCCAACAAATCATATAAAATACCTCTCTTATTGTAACAACTTACAGTTCGATCACAAACCCTAACGATGGCGGCTCCAATCGAGTCTGTACAATGCTTCGGCCGGAAGAAGACGGCAGTTGCTGTAACATACTGCAAGCGTGGCCGAGGCTTGATCAAGATCAACGGCTGCCCAATTGAGCTCGTCGAACCTGAGATCTTACGCTTCAAGGCCTACGAACCCATCCTCCTTCTCGGCCGACACCGCTTCTCCGGCGTTGACATGCGAATCAGAGTCAAAGGCGGAGGCCACACCTCACAGATCTACGCTATCCGACAGAGCATCGCTAAGGCTCTCGTCGCCTTTTACCAGAAGTACGTCGACGAACAGAGCAAGAAGGAGATAAAGGACATTCTCGTCCGCTACGATCGGACTTTGCTCGTCGCTGATCCTAGACGCTGTGAGCCGAAGAAGTTTGGTGGTCGTGGAGCTCGTGCTAGATTCCAGAAATCATATCGTTGATCGAAGTGTTTTAGGCGTCCATGGCCCAGAGTCGCTTGTTGGTATTATTTATTTTTTGCTTTTCTGTTCCAATTACCTTCCATTTCAATTTTTTTATCCGTTTATGATTGTAGTATAAGATTTTTTGACCCGAGGCTTGAATTTCTGATTGCTGAGATCATTGCAATCGTAATGCCATTTTGGAACATCAAAGTTTTCTTCCATTTGTTAAGGATTCTGAATTTTCCTTCATGTGACATTATTATAACTACAGCAATGGGGTCTATTCCACATAATTTGTGTCCACCCA ATGGCGGCTCCAATCGAGTCTGTACAATGCTTCGGCCGGAAGAAGACGGCAGTTGCTGTAACATACTGCAAGCGTGGCCGAGGCTTGATCAAGATCAACGGCTGCCCAATTGAGCTCGTCGAACCTGAGATCTTACGCTTCAAGGCCTACGAACCCATCCTCCTTCTCGGCCGACACCGCTTCTCCGGCGTTGACATGCGAATCAGAGTCAAAGGCGGAGGCCACACCTCACAGATCTACGCTATCCGACAGAGCATCGCTAAGGCTCTCGTCGCCTTTTACCAGAAGTACGTCGACGAACAGAGCAAGAAGGAGATAAAGGACATTCTCGTCCGCTACGATCGGACTTTGCTCGTCGCTGATCCTAGACGCTGTGAGCCGAAGAAGTTTGGTGGTCGTGGAGCTCGTGCTAGATTCCAGAAATCATATCGTTGA ATGGCGGCTCCAATCGAGTCTGTACAATGCTTCGGCCGGAAGAAGACGGCAGTTGCTGTAACATACTGCAAGCGTGGCCGAGGCTTGATCAAGATCAACGGCTGCCCAATTGAGCTCGTCGAACCTGAGATCTTACGCTTCAAGGCCTACGAACCCATCCTCCTTCTCGGCCGACACCGCTTCTCCGGCGTTGACATGCGAATCAGAGTCAAAGGCGGAGGCCACACCTCACAGATCTACGCTATCCGACAGAGCATCGCTAAGGCTCTCGTCGCCTTTTACCAGAAGTACGTCGACGAACAGAGCAAGAAGGAGATAAAGGACATTCTCGTCCGCTACGATCGGACTTTGCTCGTCGCTGATCCTAGACGCTGTGAGCCGAAGAAGTTTGGTGGTCGTGGAGCTCGTGCTAGATTCCAGAAATCATATCGTTGA
BLAST of CSPI03G18880 vs. Swiss-Prot
Match: RS16_GOSHI (40S ribosomal protein S16 OS=Gossypium hirsutum GN=RPS16 PE=2 SV=1) HSP 1 Score: 272.3 bits (695), Expect = 3.0e-72 Identity = 135/140 (96.43%), Postives = 137/140 (97.86%), Query Frame = 1
BLAST of CSPI03G18880 vs. Swiss-Prot
Match: RS161_ARATH (40S ribosomal protein S16-1 OS=Arabidopsis thaliana GN=RPS16A PE=2 SV=1) HSP 1 Score: 261.2 bits (666), Expect = 6.9e-69 Identity = 124/139 (89.21%), Postives = 135/139 (97.12%), Query Frame = 1
BLAST of CSPI03G18880 vs. Swiss-Prot
Match: RS16_FRIAG (40S ribosomal protein S16 OS=Fritillaria agrestis GN=RPS16 PE=2 SV=1) HSP 1 Score: 261.2 bits (666), Expect = 6.9e-69 Identity = 128/145 (88.28%), Postives = 139/145 (95.86%), Query Frame = 1
BLAST of CSPI03G18880 vs. Swiss-Prot
Match: RS163_ARATH (40S ribosomal protein S16-3 OS=Arabidopsis thaliana GN=RPS16C PE=2 SV=1) HSP 1 Score: 260.8 bits (665), Expect = 9.1e-69 Identity = 123/139 (88.49%), Postives = 135/139 (97.12%), Query Frame = 1
BLAST of CSPI03G18880 vs. Swiss-Prot
Match: RS16_TORRU (40S ribosomal protein S16 OS=Tortula ruralis GN=RPS16 PE=2 SV=1) HSP 1 Score: 251.5 bits (641), Expect = 5.5e-66 Identity = 122/142 (85.92%), Postives = 137/142 (96.48%), Query Frame = 1
BLAST of CSPI03G18880 vs. TrEMBL
Match: A0A0A0L6F6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G202730 PE=3 SV=1) HSP 1 Score: 291.6 bits (745), Expect = 5.3e-76 Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 1
BLAST of CSPI03G18880 vs. TrEMBL
Match: I3NMP6_HEVBR (40S ribosomal protein S16A OS=Hevea brasiliensis GN=RPS16A PE=2 SV=1) HSP 1 Score: 288.5 bits (737), Expect = 4.5e-75 Identity = 142/143 (99.30%), Postives = 143/143 (100.00%), Query Frame = 1
BLAST of CSPI03G18880 vs. TrEMBL
Match: A0A067L229_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00289 PE=3 SV=1) HSP 1 Score: 288.5 bits (737), Expect = 4.5e-75 Identity = 142/143 (99.30%), Postives = 143/143 (100.00%), Query Frame = 1
BLAST of CSPI03G18880 vs. TrEMBL
Match: G9F9P5_HEVBR (Putative ribosomal protein S9 (Fragment) OS=Hevea brasiliensis PE=2 SV=1) HSP 1 Score: 287.3 bits (734), Expect = 1.0e-74 Identity = 141/143 (98.60%), Postives = 143/143 (100.00%), Query Frame = 1
BLAST of CSPI03G18880 vs. TrEMBL
Match: A0A061ETH8_THECC (Ribosomal protein S5 domain 2-like superfamily protein OS=Theobroma cacao GN=TCM_020568 PE=3 SV=1) HSP 1 Score: 287.3 bits (734), Expect = 1.0e-74 Identity = 140/144 (97.22%), Postives = 144/144 (100.00%), Query Frame = 1
BLAST of CSPI03G18880 vs. TAIR10
Match: AT2G09990.1 (AT2G09990.1 Ribosomal protein S5 domain 2-like superfamily protein) HSP 1 Score: 261.2 bits (666), Expect = 3.9e-70 Identity = 124/139 (89.21%), Postives = 135/139 (97.12%), Query Frame = 1
BLAST of CSPI03G18880 vs. TAIR10
Match: AT5G18380.1 (AT5G18380.1 Ribosomal protein S5 domain 2-like superfamily protein) HSP 1 Score: 260.8 bits (665), Expect = 5.1e-70 Identity = 123/139 (88.49%), Postives = 135/139 (97.12%), Query Frame = 1
BLAST of CSPI03G18880 vs. TAIR10
Match: AT3G04230.1 (AT3G04230.1 Ribosomal protein S5 domain 2-like superfamily protein) HSP 1 Score: 247.7 bits (631), Expect = 4.5e-66 Identity = 118/139 (84.89%), Postives = 130/139 (93.53%), Query Frame = 1
BLAST of CSPI03G18880 vs. NCBI nr
Match: gi|449438394|ref|XP_004136973.1| (PREDICTED: 40S ribosomal protein S16 [Cucumis sativus]) HSP 1 Score: 291.6 bits (745), Expect = 7.7e-76 Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 1
BLAST of CSPI03G18880 vs. NCBI nr
Match: gi|802563143|ref|XP_012066736.1| (PREDICTED: 40S ribosomal protein S16 [Jatropha curcas]) HSP 1 Score: 288.5 bits (737), Expect = 6.5e-75 Identity = 142/143 (99.30%), Postives = 143/143 (100.00%), Query Frame = 1
BLAST of CSPI03G18880 vs. NCBI nr
Match: gi|313586545|gb|ADR71283.1| (40S ribosomal protein S16A [Hevea brasiliensis]) HSP 1 Score: 288.5 bits (737), Expect = 6.5e-75 Identity = 142/143 (99.30%), Postives = 143/143 (100.00%), Query Frame = 1
BLAST of CSPI03G18880 vs. NCBI nr
Match: gi|225432586|ref|XP_002281350.1| (PREDICTED: 40S ribosomal protein S16 [Vitis vinifera]) HSP 1 Score: 287.3 bits (734), Expect = 1.4e-74 Identity = 141/144 (97.92%), Postives = 143/144 (99.31%), Query Frame = 1
BLAST of CSPI03G18880 vs. NCBI nr
Match: gi|590657854|ref|XP_007034683.1| (Ribosomal protein S5 domain 2-like superfamily protein [Theobroma cacao]) HSP 1 Score: 287.3 bits (734), Expect = 1.4e-74 Identity = 140/144 (97.22%), Postives = 144/144 (100.00%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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