CmoCh04G005490 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G005490
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	30S rib
Location	Cmo_Chr04 : 2723964 .. 2724398 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGCTTCAATCGAGTCTGTGCAATGCTTCGGCCGGAAGAAGACGGCTGTCGCTGTGACGTACTGCAAACGCGGCCGGGGCATAATCAAGATCAATGGCTGCCCAATTGAGCTTGTCGAGCCAGAGATCTTGCGATTCAAGGCCTACGAACCCATCCTCCTCCTCGGCCGCCATCGTTTCTCCGGCGTCGACATGCGAATCAGAGTCAAAGGCGGAGGCCACACCTCGCAGATCTATGCTATCCGTCAGAGCATTGCCAAGGCTCTTGTCGCCTTCTACCAGAAGTACGTGGACGAACAGAGCAAGAAGGAGATTAAGGACATTCTCGTTCGCTACGATCGGACTTTGCTCGTCGCCGATCCCAGGCGCTGCGAGCCGAAGAAGTTTGGTGGTCGTGGAGCTCGTGCTAGGTTTCAGAAATCATATCGTTGA

mRNA sequence

ATGGCGGCTTCAATCGAGTCTGTGCAATGCTTCGGCCGGAAGAAGACGGCTGTCGCTGTGACGTACTGCAAACGCGGCCGGGGCATAATCAAGATCAATGGCTGCCCAATTGAGCTTGTCGAGCCAGAGATCTTGCGATTCAAGGCCTACGAACCCATCCTCCTCCTCGGCCGCCATCGTTTCTCCGGCGTCGACATGCGAATCAGAGTCAAAGGCGGAGGCCACACCTCGCAGATCTATGCTATCCGTCAGAGCATTGCCAAGGCTCTTGTCGCCTTCTACCAGAAGTACGTGGACGAACAGAGCAAGAAGGAGATTAAGGACATTCTCGTTCGCTACGATCGGACTTTGCTCGTCGCCGATCCCAGGCGCTGCGAGCCGAAGAAGTTTGGTGGTCGTGGAGCTCGTGCTAGGTTTCAGAAATCATATCGTTGA

Coding sequence (CDS)

ATGGCGGCTTCAATCGAGTCTGTGCAATGCTTCGGCCGGAAGAAGACGGCTGTCGCTGTGACGTACTGCAAACGCGGCCGGGGCATAATCAAGATCAATGGCTGCCCAATTGAGCTTGTCGAGCCAGAGATCTTGCGATTCAAGGCCTACGAACCCATCCTCCTCCTCGGCCGCCATCGTTTCTCCGGCGTCGACATGCGAATCAGAGTCAAAGGCGGAGGCCACACCTCGCAGATCTATGCTATCCGTCAGAGCATTGCCAAGGCTCTTGTCGCCTTCTACCAGAAGTACGTGGACGAACAGAGCAAGAAGGAGATTAAGGACATTCTCGTTCGCTACGATCGGACTTTGCTCGTCGCCGATCCCAGGCGCTGCGAGCCGAAGAAGTTTGGTGGTCGTGGAGCTCGTGCTAGGTTTCAGAAATCATATCGTTGA

Homology

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BLAST of CmoCh04G005490 vs. Swiss-Prot
Match: RS16_GOSHI (40S ribosomal protein S16 OS=Gossypium hirsutum GN=RPS16 PE=2 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 8.7e-72
Identity = 134/141 (95.04%), Postives = 138/141 (97.87%), Query Frame = 1


Query: 4   SIESVQCFGRKKTAVAVTYCKRGRGIIKINGCPIELVEPEILRFKAYEPILLLGRHRFSG 63
           +IESVQCFGRKKTAVAVT+CKRGRG+IKINGCPIELVEPEILRFKA EPILLLGR RF+G
Sbjct: 5   AIESVQCFGRKKTAVAVTHCKRGRGLIKINGCPIELVEPEILRFKAVEPILLLGRQRFTG 64

Query: 64  VDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPR 123
           VDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILV YDRTLLVADPR
Sbjct: 65  VDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVGYDRTLLVADPR 124

Query: 124 RCEPKKFGGRGARARFQKSYR 145
           RCEPKKFGGRGARARFQKSYR
Sbjct: 125 RCEPKKFGGRGARARFQKSYR 145

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BLAST of CmoCh04G005490 vs. Swiss-Prot
Match: RS161_ARATH (40S ribosomal protein S16-1 OS=Arabidopsis thaliana GN=RPS16A PE=2 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 2.6e-68
Identity = 123/139 (88.49%), Postives = 135/139 (97.12%), Query Frame = 1


Query: 6   ESVQCFGRKKTAVAVTYCKRGRGIIKINGCPIELVEPEILRFKAYEPILLLGRHRFSGVD 65
           ESVQCFGRKKTAVAVT+CKRG G+IK+NGCPIEL +PEILRFK +EPILLLG+HRF+GV+
Sbjct: 8   ESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPILLLGKHRFAGVN 67

Query: 66  MRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 125
           MRIRV GGGHTSQ+YAIRQSIAKALVA+YQKYVDEQSKKEIKDILVRYDRTLLVADPRRC
Sbjct: 68  MRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 127

Query: 126 EPKKFGGRGARARFQKSYR 145
           EPKKFGGRGAR+R+QKSYR
Sbjct: 128 EPKKFGGRGARSRYQKSYR 146

[Close]

BLAST of CmoCh04G005490 vs. Swiss-Prot
Match: RS163_ARATH (40S ribosomal protein S16-3 OS=Arabidopsis thaliana GN=RPS16C PE=2 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 3.4e-68
Identity = 122/139 (87.77%), Postives = 135/139 (97.12%), Query Frame = 1


Query: 6   ESVQCFGRKKTAVAVTYCKRGRGIIKINGCPIELVEPEILRFKAYEPILLLGRHRFSGVD 65
           ESVQCFGRKKTAVAVT+CKRG G+IK+NGCPIEL +PEILRFK +EP+LLLG+HRF+GV+
Sbjct: 8   ESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPVLLLGKHRFAGVN 67

Query: 66  MRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 125
           MRIRV GGGHTSQ+YAIRQSIAKALVA+YQKYVDEQSKKEIKDILVRYDRTLLVADPRRC
Sbjct: 68  MRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 127

Query: 126 EPKKFGGRGARARFQKSYR 145
           EPKKFGGRGAR+R+QKSYR
Sbjct: 128 EPKKFGGRGARSRYQKSYR 146

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BLAST of CmoCh04G005490 vs. Swiss-Prot
Match: RS16_FRIAG (40S ribosomal protein S16 OS=Fritillaria agrestis GN=RPS16 PE=2 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 4.5e-68
Identity = 124/139 (89.21%), Postives = 136/139 (97.84%), Query Frame = 1


Query: 6   ESVQCFGRKKTAVAVTYCKRGRGIIKINGCPIELVEPEILRFKAYEPILLLGRHRFSGVD 65
           ESVQCFGRKKTAVAVT+CKRGRG+IK+NG PIELV+PEILR+KA+EPILLLGRHRF GVD
Sbjct: 7   ESVQCFGRKKTAVAVTHCKRGRGLIKVNGSPIELVKPEILRYKAFEPILLLGRHRFVGVD 66

Query: 66  MRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 125
           MRIRV+GGG TSQIYAIRQSIAKALVA+YQKYVDEQ+KKE+KDIL+RYDRTLLVADPRRC
Sbjct: 67  MRIRVRGGGKTSQIYAIRQSIAKALVAYYQKYVDEQAKKEVKDILMRYDRTLLVADPRRC 126

Query: 126 EPKKFGGRGARARFQKSYR 145
           EPKKFGGRGAR+RFQKSYR
Sbjct: 127 EPKKFGGRGARSRFQKSYR 145

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BLAST of CmoCh04G005490 vs. Swiss-Prot
Match: RS16_TORRU (40S ribosomal protein S16 OS=Tortula ruralis GN=RPS16 PE=2 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 1.2e-65
Identity = 121/142 (85.21%), Postives = 138/142 (97.18%), Query Frame = 1


Query: 3   ASIESVQCFGRKKTAVAVTYCKRGRGIIKINGCPIELVEPEILRFKAYEPILLLGRHRFS 62
           A++ESVQCFGRKKTAVAVTYC+RGRG+I++   PIELVEPEILR+KA+EP+LLLGR +F+
Sbjct: 2   AAVESVQCFGRKKTAVAVTYCRRGRGLIRLT-VPIELVEPEILRYKAFEPVLLLGRSKFA 61

Query: 63  GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADP 122
           GVDMRIRVKGGG+TSQIYAIRQSIAKALVA++QKYVDEQSKKEIKD+L+RYDRTLLVADP
Sbjct: 62  GVDMRIRVKGGGNTSQIYAIRQSIAKALVAYFQKYVDEQSKKEIKDVLLRYDRTLLVADP 121

Query: 123 RRCEPKKFGGRGARARFQKSYR 145
           RRCEPKKFGGRGAR+RFQKSYR
Sbjct: 122 RRCEPKKFGGRGARSRFQKSYR 142

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BLAST of CmoCh04G005490 vs. TrEMBL
Match: A0A0A0L6F6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G202730 PE=3 SV=1)

HSP 1 Score: 286.6 bits (732), Expect = 1.7e-74
Identity = 142/144 (98.61%), Postives = 143/144 (99.31%), Query Frame = 1


Query: 1   MAASIESVQCFGRKKTAVAVTYCKRGRGIIKINGCPIELVEPEILRFKAYEPILLLGRHR 60
           MAA IESVQCFGRKKTAVAVTYCKRGRG+IKINGCPIELVEPEILRFKAYEPILLLGRHR
Sbjct: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60

Query: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120
           FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA
Sbjct: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120

Query: 121 DPRRCEPKKFGGRGARARFQKSYR 145
           DPRRCEPKKFGGRGARARFQKSYR
Sbjct: 121 DPRRCEPKKFGGRGARARFQKSYR 144

[Close]

BLAST of CmoCh04G005490 vs. TrEMBL
Match: I3NMP6_HEVBR (40S ribosomal protein S16A OS=Hevea brasiliensis GN=RPS16A PE=2 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 1.4e-73
Identity = 140/143 (97.90%), Postives = 142/143 (99.30%), Query Frame = 1


Query: 2   AASIESVQCFGRKKTAVAVTYCKRGRGIIKINGCPIELVEPEILRFKAYEPILLLGRHRF 61
           AA IESVQCFGRKKTAVAVTYCKRGRG+IKINGCPIELVEPEILRFKAYEPILLLGRHRF
Sbjct: 5   AAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF 64

Query: 62  SGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD 121
           +GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD
Sbjct: 65  AGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD 124

Query: 122 PRRCEPKKFGGRGARARFQKSYR 145
           PRRCEPKKFGGRGARARFQKSYR
Sbjct: 125 PRRCEPKKFGGRGARARFQKSYR 147

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BLAST of CmoCh04G005490 vs. TrEMBL
Match: A0A067L229_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00289 PE=3 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 1.4e-73
Identity = 140/143 (97.90%), Postives = 142/143 (99.30%), Query Frame = 1


Query: 2   AASIESVQCFGRKKTAVAVTYCKRGRGIIKINGCPIELVEPEILRFKAYEPILLLGRHRF 61
           AA IESVQCFGRKKTAVAVTYCKRGRG+IKINGCPIELVEPEILRFKAYEPILLLGRHRF
Sbjct: 3   AAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF 62

Query: 62  SGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD 121
           +GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD
Sbjct: 63  AGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD 122

Query: 122 PRRCEPKKFGGRGARARFQKSYR 145
           PRRCEPKKFGGRGARARFQKSYR
Sbjct: 123 PRRCEPKKFGGRGARARFQKSYR 145

[Close]

BLAST of CmoCh04G005490 vs. TrEMBL
Match: A0A061ETH8_THECC (Ribosomal protein S5 domain 2-like superfamily protein OS=Theobroma cacao GN=TCM_020568 PE=3 SV=1)

HSP 1 Score: 282.3 bits (721), Expect = 3.2e-73
Identity = 138/144 (95.83%), Postives = 143/144 (99.31%), Query Frame = 1


Query: 1   MAASIESVQCFGRKKTAVAVTYCKRGRGIIKINGCPIELVEPEILRFKAYEPILLLGRHR 60
           MAA +ESVQCFGRKKTAVAVTYCKRGRG+IKINGCPIELVEPEILR+KAYEPILLLGRHR
Sbjct: 1   MAAPVESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRYKAYEPILLLGRHR 60

Query: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120
           F+GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQK+VDEQSKKEIKDILVRYDRTLLVA
Sbjct: 61  FAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKFVDEQSKKEIKDILVRYDRTLLVA 120

Query: 121 DPRRCEPKKFGGRGARARFQKSYR 145
           DPRRCEPKKFGGRGARARFQKSYR
Sbjct: 121 DPRRCEPKKFGGRGARARFQKSYR 144

[Close]

BLAST of CmoCh04G005490 vs. TrEMBL
Match: G9F9P5_HEVBR (Putative ribosomal protein S9 (Fragment) OS=Hevea brasiliensis PE=2 SV=1)

HSP 1 Score: 282.3 bits (721), Expect = 3.2e-73
Identity = 139/143 (97.20%), Postives = 142/143 (99.30%), Query Frame = 1


Query: 2   AASIESVQCFGRKKTAVAVTYCKRGRGIIKINGCPIELVEPEILRFKAYEPILLLGRHRF 61
           +A IESVQCFGRKKTAVAVTYCKRGRG+IKINGCPIELVEPEILRFKAYEPILLLGRHRF
Sbjct: 1   SAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF 60

Query: 62  SGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD 121
           +GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD
Sbjct: 61  AGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD 120

Query: 122 PRRCEPKKFGGRGARARFQKSYR 145
           PRRCEPKKFGGRGARARFQKSYR
Sbjct: 121 PRRCEPKKFGGRGARARFQKSYR 143

[Close]

BLAST of CmoCh04G005490 vs. TAIR10
Match: AT2G09990.1 (AT2G09990.1 Ribosomal protein S5 domain 2-like superfamily protein)

HSP 1 Score: 259.2 bits (661), Expect = 1.5e-69
Identity = 123/139 (88.49%), Postives = 135/139 (97.12%), Query Frame = 1


Query: 6   ESVQCFGRKKTAVAVTYCKRGRGIIKINGCPIELVEPEILRFKAYEPILLLGRHRFSGVD 65
           ESVQCFGRKKTAVAVT+CKRG G+IK+NGCPIEL +PEILRFK +EPILLLG+HRF+GV+
Sbjct: 8   ESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPILLLGKHRFAGVN 67

Query: 66  MRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 125
           MRIRV GGGHTSQ+YAIRQSIAKALVA+YQKYVDEQSKKEIKDILVRYDRTLLVADPRRC
Sbjct: 68  MRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 127

Query: 126 EPKKFGGRGARARFQKSYR 145
           EPKKFGGRGAR+R+QKSYR
Sbjct: 128 EPKKFGGRGARSRYQKSYR 146

[Close]

BLAST of CmoCh04G005490 vs. TAIR10
Match: AT5G18380.1 (AT5G18380.1 Ribosomal protein S5 domain 2-like superfamily protein)

HSP 1 Score: 258.8 bits (660), Expect = 1.9e-69
Identity = 122/139 (87.77%), Postives = 135/139 (97.12%), Query Frame = 1


Query: 6   ESVQCFGRKKTAVAVTYCKRGRGIIKINGCPIELVEPEILRFKAYEPILLLGRHRFSGVD 65
           ESVQCFGRKKTAVAVT+CKRG G+IK+NGCPIEL +PEILRFK +EP+LLLG+HRF+GV+
Sbjct: 8   ESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPVLLLGKHRFAGVN 67

Query: 66  MRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 125
           MRIRV GGGHTSQ+YAIRQSIAKALVA+YQKYVDEQSKKEIKDILVRYDRTLLVADPRRC
Sbjct: 68  MRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 127

Query: 126 EPKKFGGRGARARFQKSYR 145
           EPKKFGGRGAR+R+QKSYR
Sbjct: 128 EPKKFGGRGARSRYQKSYR 146

[Close]

BLAST of CmoCh04G005490 vs. TAIR10
Match: AT3G04230.1 (AT3G04230.1 Ribosomal protein S5 domain 2-like superfamily protein)

HSP 1 Score: 246.1 bits (627), Expect = 1.3e-65
Identity = 118/139 (84.89%), Postives = 130/139 (93.53%), Query Frame = 1


Query: 6   ESVQCFGRKKTAVAVTYCKRGRGIIKINGCPIELVEPEILRFKAYEPILLLGRHRFSGVD 65
           ESVQCFGRKKTA AVTYCKRG G+IK+NG PIEL +PEILRFK +EP+LLLG+HRF+GVD
Sbjct: 8   ESVQCFGRKKTATAVTYCKRGSGMIKLNGSPIELYQPEILRFKIFEPVLLLGKHRFAGVD 67

Query: 66  MRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 125
           MRIR  GGG+TS++YAIRQSIAKALVA+YQKYVDEQSKKEIKDIL+RYDRTLLVADPRRC
Sbjct: 68  MRIRATGGGNTSRVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILMRYDRTLLVADPRRC 127

Query: 126 EPKKFGGRGARARFQKSYR 145
           E KKFGG GARARFQKSYR
Sbjct: 128 ESKKFGGPGARARFQKSYR 146

[Close]

BLAST of CmoCh04G005490 vs. NCBI nr
Match: gi|449438394|ref|XP_004136973.1| (PREDICTED: 40S ribosomal protein S16 [Cucumis sativus])

HSP 1 Score: 286.6 bits (732), Expect = 2.4e-74
Identity = 142/144 (98.61%), Postives = 143/144 (99.31%), Query Frame = 1


Query: 1   MAASIESVQCFGRKKTAVAVTYCKRGRGIIKINGCPIELVEPEILRFKAYEPILLLGRHR 60
           MAA IESVQCFGRKKTAVAVTYCKRGRG+IKINGCPIELVEPEILRFKAYEPILLLGRHR
Sbjct: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60

Query: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120
           FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA
Sbjct: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120

Query: 121 DPRRCEPKKFGGRGARARFQKSYR 145
           DPRRCEPKKFGGRGARARFQKSYR
Sbjct: 121 DPRRCEPKKFGGRGARARFQKSYR 144

[Close]

BLAST of CmoCh04G005490 vs. NCBI nr
Match: gi|802563143|ref|XP_012066736.1| (PREDICTED: 40S ribosomal protein S16 [Jatropha curcas])

HSP 1 Score: 283.5 bits (724), Expect = 2.1e-73
Identity = 140/143 (97.90%), Postives = 142/143 (99.30%), Query Frame = 1


Query: 2   AASIESVQCFGRKKTAVAVTYCKRGRGIIKINGCPIELVEPEILRFKAYEPILLLGRHRF 61
           AA IESVQCFGRKKTAVAVTYCKRGRG+IKINGCPIELVEPEILRFKAYEPILLLGRHRF
Sbjct: 3   AAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF 62

Query: 62  SGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD 121
           +GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD
Sbjct: 63  AGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD 122

Query: 122 PRRCEPKKFGGRGARARFQKSYR 145
           PRRCEPKKFGGRGARARFQKSYR
Sbjct: 123 PRRCEPKKFGGRGARARFQKSYR 145

[Close]

BLAST of CmoCh04G005490 vs. NCBI nr
Match: gi|313586545|gb|ADR71283.1| (40S ribosomal protein S16A [Hevea brasiliensis])

HSP 1 Score: 283.5 bits (724), Expect = 2.1e-73
Identity = 140/143 (97.90%), Postives = 142/143 (99.30%), Query Frame = 1


Query: 2   AASIESVQCFGRKKTAVAVTYCKRGRGIIKINGCPIELVEPEILRFKAYEPILLLGRHRF 61
           AA IESVQCFGRKKTAVAVTYCKRGRG+IKINGCPIELVEPEILRFKAYEPILLLGRHRF
Sbjct: 5   AAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF 64

Query: 62  SGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD 121
           +GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD
Sbjct: 65  AGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD 124

Query: 122 PRRCEPKKFGGRGARARFQKSYR 145
           PRRCEPKKFGGRGARARFQKSYR
Sbjct: 125 PRRCEPKKFGGRGARARFQKSYR 147

[Close]

BLAST of CmoCh04G005490 vs. NCBI nr
Match: gi|225432586|ref|XP_002281350.1| (PREDICTED: 40S ribosomal protein S16 [Vitis vinifera])

HSP 1 Score: 282.3 bits (721), Expect = 4.6e-73
Identity = 139/144 (96.53%), Postives = 142/144 (98.61%), Query Frame = 1


Query: 1   MAASIESVQCFGRKKTAVAVTYCKRGRGIIKINGCPIELVEPEILRFKAYEPILLLGRHR 60
           MAA IESVQCFGRKKTAVAVTYCKRGRG+IKINGCPIEL+EPEILR KAYEPILLLGRHR
Sbjct: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELIEPEILRHKAYEPILLLGRHR 60

Query: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120
           F+GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA
Sbjct: 61  FAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120

Query: 121 DPRRCEPKKFGGRGARARFQKSYR 145
           DPRRCEPKKFGGRGARARFQKSYR
Sbjct: 121 DPRRCEPKKFGGRGARARFQKSYR 144

[Close]

BLAST of CmoCh04G005490 vs. NCBI nr
Match: gi|590657854|ref|XP_007034683.1| (Ribosomal protein S5 domain 2-like superfamily protein [Theobroma cacao])

HSP 1 Score: 282.3 bits (721), Expect = 4.6e-73
Identity = 138/144 (95.83%), Postives = 143/144 (99.31%), Query Frame = 1


Query: 1   MAASIESVQCFGRKKTAVAVTYCKRGRGIIKINGCPIELVEPEILRFKAYEPILLLGRHR 60
           MAA +ESVQCFGRKKTAVAVTYCKRGRG+IKINGCPIELVEPEILR+KAYEPILLLGRHR
Sbjct: 1   MAAPVESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRYKAYEPILLLGRHR 60

Query: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120
           F+GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQK+VDEQSKKEIKDILVRYDRTLLVA
Sbjct: 61  FAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKFVDEQSKKEIKDILVRYDRTLLVA 120

Query: 121 DPRRCEPKKFGGRGARARFQKSYR 145
           DPRRCEPKKFGGRGARARFQKSYR
Sbjct: 121 DPRRCEPKKFGGRGARARFQKSYR 144

The following BLAST results are available for this feature:

BLAST of CmoCh04G005490 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RS16_GOSHI	8.7e-72	95.04	40S ribosomal protein S16 OS=Gossypium hirsutum GN=RPS16 PE=2 SV=1	[more]
RS161_ARATH	2.6e-68	88.49	40S ribosomal protein S16-1 OS=Arabidopsis thaliana GN=RPS16A PE=2 SV=1	[more]
RS163_ARATH	3.4e-68	87.77	40S ribosomal protein S16-3 OS=Arabidopsis thaliana GN=RPS16C PE=2 SV=1	[more]
RS16_FRIAG	4.5e-68	89.21	40S ribosomal protein S16 OS=Fritillaria agrestis GN=RPS16 PE=2 SV=1	[more]
RS16_TORRU	1.2e-65	85.21	40S ribosomal protein S16 OS=Tortula ruralis GN=RPS16 PE=2 SV=1	[more]

BLAST of CmoCh04G005490 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L6F6_CUCSA	1.7e-74	98.61	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G202730 PE=3 SV=1	[more]
I3NMP6_HEVBR	1.4e-73	97.90	40S ribosomal protein S16A OS=Hevea brasiliensis GN=RPS16A PE=2 SV=1	[more]
A0A067L229_JATCU	1.4e-73	97.90	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00289 PE=3 SV=1	[more]
A0A061ETH8_THECC	3.2e-73	95.83	Ribosomal protein S5 domain 2-like superfamily protein OS=Theobroma cacao GN=TCM...	[more]
G9F9P5_HEVBR	3.2e-73	97.20	Putative ribosomal protein S9 (Fragment) OS=Hevea brasiliensis PE=2 SV=1	[more]

BLAST of CmoCh04G005490 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G09990.1	1.5e-69	88.49	Ribosomal protein S5 domain 2-like superfamily protein	[more]
AT5G18380.1	1.9e-69	87.77	Ribosomal protein S5 domain 2-like superfamily protein	[more]
AT3G04230.1	1.3e-65	84.89	Ribosomal protein S5 domain 2-like superfamily protein	[more]

BLAST of CmoCh04G005490 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449438394\|ref\|XP_004136973.1\|	2.4e-74	98.61	PREDICTED: 40S ribosomal protein S16 [Cucumis sativus]	[more]
gi\|802563143\|ref\|XP_012066736.1\|	2.1e-73	97.90	PREDICTED: 40S ribosomal protein S16 [Jatropha curcas]	[more]
gi\|313586545\|gb\|ADR71283.1\|	2.1e-73	97.90	40S ribosomal protein S16A [Hevea brasiliensis]	[more]
gi\|225432586\|ref\|XP_002281350.1\|	4.6e-73	96.53	PREDICTED: 40S ribosomal protein S16 [Vitis vinifera]	[more]
gi\|590657854\|ref\|XP_007034683.1\|	4.6e-73	95.83	Ribosomal protein S5 domain 2-like superfamily protein [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000754	Ribosomal_S9
IPR014721	Ribosomal_S5_D2-typ_fold_subgr
IPR020568	Ribosomal_S5_D2-typ_fold
IPR020574	Ribosomal_S9_CS

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
biological_process	GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
cellular_component	GO:0005840	ribosome
cellular_component	GO:0022627	cytosolic small ribosomal subunit
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G005490.1	CmoCh04G005490.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000754	Ribosomal protein S9	PANTHER	PTHR21569	RIBOSOMAL PROTEIN S9	coord: 1..144 score: 6.1E
IPR000754	Ribosomal protein S9	PFAM	PF00380	Ribosomal_S9	coord: 12..144 score: 4.1
IPR014721	Ribosomal protein S5 domain 2-type fold, subgroup	GENE3D	G3DSA:3.30.230.10		coord: 7..144 score: 4.6
IPR020568	Ribosomal protein S5 domain 2-type fold	unknown	SSF54211	Ribosomal protein S5 domain 2-like	coord: 7..144 score: 1.29
IPR020574	Ribosomal protein S9, conserved site	PROSITE	PS00360	RIBOSOMAL_S9	coord: 72..90 scor
None	No IPR available	PANTHER	PTHR21569:SF6	SUBFAMILY NOT NAMED	coord: 1..144 score: 6.1E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G005490	CmaCh04G005100	Cucurbita maxima (Rimu)	cmacmoB728
CmoCh04G005490	Cla013050	Watermelon (97103) v1	cmowmB699
CmoCh04G005490	Cla013082	Watermelon (97103) v1	cmowmB697
CmoCh04G005490	Csa3G215620	Cucumber (Chinese Long) v2	cmocuB696
CmoCh04G005490	MELO3C019490	Melon (DHL92) v3.5.1	cmomeB683
CmoCh04G005490	MELO3C019524	Melon (DHL92) v3.5.1	cmomeB682
CmoCh04G005490	ClCG05G009810	Watermelon (Charleston Gray)	cmowcgB660
CmoCh04G005490	ClCG05G010150	Watermelon (Charleston Gray)	cmowcgB658
CmoCh04G005490	CSPI03G18880	Wild cucumber (PI 183967)	cmocpiB706
CmoCh04G005490	Cp4.1LG01g01990	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G005490	MELO3C019490.2	Melon (DHL92) v3.6.1	cmomedB774
CmoCh04G005490	CsaV3_3G018990	Cucumber (Chinese Long) v3	cmocucB0825
CmoCh04G005490	Cla97C05G092200	Watermelon (97103) v2	cmowmbB735
CmoCh04G005490	Bhi01G001237	Wax gourd	cmowgoB0849
CmoCh04G005490	CsGy3G018760	Cucumber (Gy14) v2	cgybcmoB396
CmoCh04G005490	Carg08179	Silver-seed gourd	carcmoB0514

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G005490	Cucurbita maxima (Rimu)	cmacmoB338
CmoCh04G005490	Wild cucumber (PI 183967)	cmocpiB698
CmoCh04G005490	Cucumber (Chinese Long) v2	cmocuB687
CmoCh04G005490	Cucurbita pepo (Zucchini)	cmocpeB668
CmoCh04G005490	Bottle gourd (USVL1VR-Ls)	cmolsiB683
CmoCh04G005490	Cucumber (Gy14) v2	cgybcmoB386
CmoCh04G005490	Silver-seed gourd	carcmoB0899
CmoCh04G005490	Cucumber (Chinese Long) v3	cmocucB0814
CmoCh04G005490	Cucurbita moschata (Rifu)	cmocmoB286