Cp4.1LG01g01260 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG01g01260
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	embryo defective 3006
Location	Cp4.1LG01 : 3102534 .. 3108288 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAATCCGTACGGAGCTCGGGTCGGCCCATCTGGCAATTAGTACTGGGCCACTTGGGCCGTTAATAACAAATTTGGGATTCAATTTTGTTATATTTACAATATTGACCCTCTATGTTTGAAATATTACATAATTACCAAGTTTCAACGCCAAAAACCTCCCGCCTTCGAATTCAACTTCTTCGTCTGTTCGTCTTTTTTTTGTCGTTGAAGCCGTGACTCGCCGGCACTGACCGGAGTCATCAGCAACTCGCTCACTTGCTGCCGTTTTCTAATTTCTGTTTTATGTTGTTATCGCGCCATTTTCGCAGAGTTATATGTTGGCGTGGAATTTAGCGAGGTAGGGTTGGGGATTGAAGTGTATAAACGTTTTGAAAATGGAGAAGAAGCACGAGATTGGTACTCCGCTTAGCTCCAGCCTGATTGATCTGACAAAGTCGTTCAAGCTCGCCGTTCGTTCTCTCCTGACTTCCTGTTCCAGGGAGGTAAGCACGAAAGTTGCTATAATGTGTATAATGTTCTATACTTTAGTAACCTTTTGTTCATATTTGTTTCTGGAAATGGTGTGGAATTGATGCTTTGGAATAAAAATTTCCTTATCAAGTGGCAATTTGGTTATGAGAGATATCTATAGGTTACTTTTCTTTTGAAAGAGACAGTAAATTTTGTATAGTTGTGCTTTTTTGTTTCGTAAAGGAGTTTCGGGAATGCTTTTCGGGATTTACGACCGCGGAGCAAGAAAATCTTCATCGTCTATTCGTTCAGGTACTACTGTGCTGCTCTTTTATGTCTTCCCCCATCCTCACAGGAAAGATGTGGTGAAAGAAAATTAACATCCTGTGGACACAGATGCTATAATTTAAATTGGAGATCTTGTGTTTCTTCTAATATGATTCTTGGACGTTTTCTTGCGTGGATCATTCTTAGTTTTGTGAATGTGCAAATCATGCGTTGTCTTCATGGTTAGCAGCATGTTATTTGGTTTACATGTTAAGAATTTACATATATTCTTATTGCTTTTAGTCTCTTTGGACATTGGAATAATGCATTTTGGTGTTCATCGAACTTTCAGGTTATAACTTCTTTGCATGGAAACATAGAGGTATATTTCCATTCAAGATTTTGCTTCGGAGTCCATCCTGACGATTCCATTTCGGGATCTCTTGTTTAGCAATATGATTATGTTGTTTCTTTCTTTTTCTCAACGTTAAGGCACTTAGAACATGTATGAGAGTGATATTGAAATTGCCAAATCACTTTTGTCATGTTCAAGTTACATGCCTTTAATCCTTCAAAATCATCATTCAAGAGCATCTTAGTATTAATTTTACAGTTTTAAATGTAATTTTAAATTCATCAAAATGGTTTTTGAATAATTAAAATCATGTTTGGGACTGATTTGAATACGACTAAAGCGATTTTAACCATTTCAAAATTGCTCCCGAACATCTTTAATGGCATAATGTGCTTATTCTATGCTTACGCTTACTGTTGTTCCAATTGGATGTTCTTTTTAGTTATAATCATGTCATAGAATAATCATAACTCTTTATAGTCTTTGGATTTTCTTCTCTAATTATTGTATACAAATTTTTAGCATGGAAGTTCTCATTTCTGCGCTGCAACGAGACACATGATTTAGAATAGAAAGAATATACTTATATATTGTTAATAGAAGATAACAAGCCATGATAACACAAAATTTGATTGCTTCTGTCTCTAAGAGATAGGAAATGGAAAAAAGAAAAGTTTCTAAAAAACACGCAATATTTGTGTATCAGTAGCATGCAAATTGCCTTCGCCTTTTGCAAAAAGTAACCCATGCAATCACCCGAACCTAGGCGTTTGCCATAGTCTAGTGCGGTTTTCCTCGTCCATTGCTGTTGGCTATTCACCTAACCCTGTCTTGAAATAAATCCTACAATAGGCTTCTCATCTTTTACATTTATGTGGTTATCGACAACATTTCATTTTAATTCTCTTTTTACATATTGCACTTCTGTTCAATAACACTGCCATTTCTGAAATATACAGGACGAGTTTGAGTCATTATGTATTGAAACCCAGGTAATTCTCCTGTCTGTTGACTTGTTTTGGTTATTTACAATTGGCTCTTGCTTGTTGGATGTGTCAGATTTGTTGGGATGGGGGGNAGTTGATTTTTTCGATCTGATCCAATTCAATGATTTTCTGTCTCCTTTTCATTTTTTTCCCTTCATGTGTATATATGTATATATATAATTTTAAGGCATAAGTTCAATAGGATTACAGTGAGGGCCTTCATTGAAATTATTGATGTATTAGTTCTAAAAAACTCAACCAGTTGCACAGTCTTGAATGTGTCAGATGCCTTTGTCCAAATAGGTGATGGTGGGTAAGAATTAGCGAAAATATGTGAGATTGATCGTGATGGTTCACATGATAGGATTACAGGAAAAGTAATCAACATTCTCTATTATTTCACTTCTTTAATGATAATTTTTCTTCTCAATTTCTAACTGCGTCACTTGTGCTTTGTCGTGAGTAATTGTAATTTGTTGGGGTTTTGTTTGAAGTGATGATGCATTGTTAATCATTTGTATCTATGTCAGGTGATTTTTCCTCTTCCATTGTGTGATTGTTTGCCTCATTGTAATAGTTTTGATTTATGCAGGTAGGACGTGTACTTGATAACGTTGAACAACTTTTGGAAGAACAAGATCTAGATCCATTGTACTCCAAGAAGTAGGTATCTTCTGCTGGGAGGTTACTTTCTCAATTAGTGGTCCAAATAAGTTGGGTTCTCTGATAGTTAAATCAATGATTTGATGTATAATTATATATAATGTTTGGATGAAAATTTGAAATGTGATTGGAAGTATAACAATTCATGGTGGTTTATGCAATTTTCCCTTGTTTTTCGTTACGCAAAGGCATGGGAAGTGATCTATTAAAGTCGGGCTTCCTTGGGCGGCCTTTACAGATTGAATTTCTCAGATGGAGTTAACAAATAACAATATCTAATGCAGGACTAATATAATGGATATTGCTAATTATCTGTCCATGACAAGGAAGAATGAGATCCAACACTTGAAGGACATGCTGAAAACGGTATGCAACTCTTGTAACAGTAGCGAACTTCTCTATCTAAAAACAAACCAGCTTAACTGACATTGTTACTCTTGTTTTATAATTATTTATTTCTGTGGGTGAGAGGGAGGGGGAGGGGGTCATTCTTAATTGATTCAAGTGTAATGGAAGAATTTAGGCCTTTCTTCATTGGTAAATCTTAGCATATCACCGCATTTCCCTTTAGAAGAACTGAATTCTTAAAGTCACAACATTACTGGTAGTTTTGTGTCCAATGGATCTTTTTTCTGTGATTGAAAATTGAAACAAATGAGTATGCTCTGATCCATCTGTAAGCACGCATCTTAGCTTTTAGGTAAAAAAGGCTCAATAATGCATTTGCTTTTGTTTGCTTGTATTTCTTGGGCGTGTCTCCCTGTGGTACTCTTTCTACTTTGTATTTTATGCATCTTCCTGTACCGTCCTTTCCACTTTAGTTCCCAAAAACAATCTGTGCTGTCTTTTCTTTTATGGTCCTTGCCAGCTGCCAATTAATGCTGTGTGGCTTCTCAAAGAATCATAGCAGATACTATCAATCAATTCCTTCACTAGATTTTTATGGTATACGTGGCAATTTCTTGACAAATTAAGTTTACAAGTTTCTTATGATTGAAACTTTTTCTAGTCTGAGGAACAGAACCGGCATATTCAAGCCCGTATCGATGTCCTTAAGAAAGGAGTGGAAGATGCCTCGGGCATGGCTGATGCTGTTGAGAAGGTGCAACTTTTATTTGCTTTCCAATGACCCAATGACCCAATTGGTATTTTTTAAGACAGTTTAATCTTAAAAAATGTGTTCATTAATGGCAAAGTCTGAAAATATTGATTGTTTTCTGATGAAAGTTCCAAGAATTTAAACCATCTTGAAGAGAAAATAAAATTCAAGAACTAGTTTCTAAGCCCTATATCTAATCCGCAAATGCTCACAGCTAAGAATCAGATGCAGAGCTTCTCCAACTGATGGTGATAACGGGACCTGCGACACATAACTCGCTGCTGCCTGTTGCCATCCTATTTGATTTCGTCCTGTTAAATGCCCTCTGGGATTGGCGTTGAATAATGAGGTCAGTATGTAATTCAGTAGATTTCTTTGTGTAAATTTCTTCAGCTTAGCTCAAGCTTAATATGTTTTATGTTGTGGATCATGTGTTCTTCTGTCAATTCAACCGCTTTGTCTTTCTATAAGAGAAATCTCTATATGGCTTTTGTTTTTCCTCTTCCACTCTCTGTGAAATCTCTATATGGCTTTTTTCTTTAGCTTAGTCCAATTTTATTTAGGTATATATGATCAGTCAGAATATTTATGGGCAACATTTCACAGAAATTTCTTGGTGATGCAAATATTCCACTCAATATTTGAATTTCATATCTCATAATTTCATTTGTCAATATATATTATAATCTTTATAAGAAAAGTAAGTGATTGACTTTTATGGGTGGGTGAATTATTTCCATGAAATGACTTTTGTTAACCAAATTAAGCGATTGACATTTGAATATCTCTAAATTTATGGTATTTGTCACTATTAAATTGTGATTTAGCATGACAACCGAATCTCAAATTCATTGAATTTTGGTTGATTAGATCATTCTAAGTAATGAGGAAATGTATTTAAATGATTAGAGAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNGCTGCTCAGAGTAACTGTTGTAATGAATTGATGTGATGATAACATGAAATGACGGACTTCAATACTCGAATATTTATTTGGATTAATCATTAAAATACAATACTTAATATGTCAATTTTTCATTCGCATTACTATCAGGATAATTTTAAAATATTTTTAAAAAAATTAAAATATAATATTGTAGCTTTTCAAACATCATTTTTAAAACAATATTATAGTCTTGTCCAAATAAATATAATATGCAATCTTTTTTGTCTTCTTATTAAAAATTGCAGCCACGAATGCAATAAGACCAACTTCAGCTCTTTTTGTTGCACCACGTGTCCCTCTCTCTCTCTCTCTCTCTCACATACATCATTTGATGCTAATTTTGCTCTCTCTCTCTCTCCCATAATATCTTTACAGCTAATATATCATTTGTTTTTCTTTTAAGAATATACGTTTTTTTGTCTTGTCTCTCTTTTTTTTTTTATGCAATAATTGTAATTTTCGACCTTGAAAAATAAATAAAGTTAATGTTGACAAATAAATACTAATGTAAATTACAAATTATTATTTAGTTCTTAAATTTTAAAATTTATAAATTTAATTCCTTAAAATAAGATATTTATTGTCTTTTTCAATATTTTTTTCCCTTTTTATATGTCTTGCCTTAACTTAAATAAGAATAATAAGTGAGCACAATATTTTTATTTTTATTTTTAAGATAACTTTCTCTCATTATTTTAATATTTTCTCTCACTTATTATTTTAATATGATTTAATTTATAGGCGTTGGAAACAAAAGTCAACGAAGGCAGCCACAGTCAGTACTTGCACAGAAGTCCAAACCATGAATCCCCCACATGATGGGGATGTCATTATTAGCCTTAAATTATTTAACTATCAAATATCAACAAAAACACTTTATAATATAATTTTTAAAGTGAAAATATCTGTTCTGGCCAATGTTTTAAAATCCATTGA

mRNA sequence

GAATCCGTACGGAGCTCGGGTCGGCCCATCTGGCAATTAGTACTGGGCCACTTGGGCCGTTAATAACAAATTTGGGATTCAATTTTGTTATATTTACAATATTGACCCTCTATGTTTGAAATATTACATAATTACCAAGTTTCAACGCCAAAAACCTCCCGCCTTCGAATTCAACTTCTTCGTCTGTTCGTCTTTTTTTTGTCGTTGAAGCCGTGACTCGCCGGCACTGACCGGAGTCATCAGCAACTCGCTCACTTGCTGCCGTTTTCTAATTTCTGTTTTATGTTGTTATCGCGCCATTTTCGCAGAGTTATATGTTGGCGTGGAATTTAGCGAGGTAGGGTTGGGGATTGAAGTGTATAAACGTTTTGAAAATGGAGAAGAAGCACGAGATTGGTACTCCGCTTAGCTCCAGCCTGATTGATCTGACAAAGTCGTTCAAGCTCGCCGTTCGTTCTCTCCTGACTTCCTGTTCCAGGGAGGAGTTTCGGGAATGCTTTTCGGGATTTACGACCGCGGAGCAAGAAAATCTTCATCGTCTATTCGTTCAGGTTATAACTTCTTTGCATGGAAACATAGAGGACGAGTTTGAGTCATTATGTATTGAAACCCAGGTAGGACGTGTACTTGATAACGTTGAACAACTTTTGGAAGAACAAGATCTAGATCCATTGTACTCCAAGAAGACTAATATAATGGATATTGCTAATTATCTGTCCATGACAAGGAAGAATGAGATCCAACACTTGAAGGACATGCTGAAAACGTCTGAGGAACAGAACCGGCATATTCAAGCCCGTATCGATGTCCTTAAGAAAGGAGTGGAAGATGCCTCGGGCATGGCTGATGCTGTTGAGAAGGTGCAACTTTTATTTGCTTTCCAATGACCCAATGACCCAATTGGTATTTTTTAAGACAGTTTAATCTTAAAAAATGTGTTCATTAATGGCAAAGTCTGAAAATATTGATTGTTTTCTGATGAAAGTTCCAAGAATTTAAACCATCTTGAAGAGAAAATAAAATTCAAGAACTAGTTTCTAAGCCCTATATCTAATCCGCAAATGCTCACAGCTAAGAATCAGATGCAGAGCTTCTCCAACTGATGGTGATAACGGGACCTGCGACACATAACTCGCTGCTGCCTGTTGCCATCCTATTTGATTTCGTCCTGTTAAATGCCCTCTGGGATTGGCGTTGAATAATGAGGCGTTGGAAACAAAAGTCAACGAAGGCAGCCACAGTCAGTACTTGCACAGAAGTCCAAACCATGAATCCCCCACATGATGGGGATGTCATTATTAGCCTTAAATTATTTAACTATCAAATATCAACAAAAACACTTTATAATATAATTTTTAAAGTGAAAATATCTGTTCTGGCCAATGTTTTAAAATCCATTGA

Coding sequence (CDS)

ATGGAGAAGAAGCACGAGATTGGTACTCCGCTTAGCTCCAGCCTGATTGATCTGACAAAGTCGTTCAAGCTCGCCGTTCGTTCTCTCCTGACTTCCTGTTCCAGGGAGGAGTTTCGGGAATGCTTTTCGGGATTTACGACCGCGGAGCAAGAAAATCTTCATCGTCTATTCGTTCAGGTTATAACTTCTTTGCATGGAAACATAGAGGACGAGTTTGAGTCATTATGTATTGAAACCCAGGTAGGACGTGTACTTGATAACGTTGAACAACTTTTGGAAGAACAAGATCTAGATCCATTGTACTCCAAGAAGACTAATATAATGGATATTGCTAATTATCTGTCCATGACAAGGAAGAATGAGATCCAACACTTGAAGGACATGCTGAAAACGTCTGAGGAACAGAACCGGCATATTCAAGCCCGTATCGATGTCCTTAAGAAAGGAGTGGAAGATGCCTCGGGCATGGCTGATGCTGTTGAGAAGGTGCAACTTTTATTTGCTTTCCAATGA

Protein sequence

MEKKHEIGTPLSSSLIDLTKSFKLAVRSLLTSCSREEFRECFSGFTTAEQENLHRLFVQVITSLHGNIEDEFESLCIETQVGRVLDNVEQLLEEQDLDPLYSKKTNIMDIANYLSMTRKNEIQHLKDMLKTSEEQNRHIQARIDVLKKGVEDASGMADAVEKVQLLFAFQ

Homology

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BLAST of Cp4.1LG01g01260 vs. TrEMBL
Match: A0A0A0KV94_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G056590 PE=4 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 6.5e-65
Identity = 131/164 (79.88%), Postives = 147/164 (89.63%), Query Frame = 1


Query: 1   MEKKHEIGTPLSSSLIDLTKSFKLAVRSLLTSCSREEFRECFSGFTTAEQENLHRLFVQV 60
           M +KHE+  P+SS  IDL KSFKLAVR LLTSCSREEFRECFS FTTAEQ+ LHRLF+QV
Sbjct: 1   MGEKHELDAPVSSRQIDLKKSFKLAVRPLLTSCSREEFRECFSRFTTAEQDYLHRLFIQV 60

Query: 61  ITSLHGNIEDEFESLCIETQVGRVLDNVEQLLEEQDLDPLYSKKTNIMDIANYLSMTRKN 120
           ITSLHGNIEDEFESLC+ETQVG V DNVEQLLEEQDLDPLYSKKTNI++I N+LSMT+K 
Sbjct: 61  ITSLHGNIEDEFESLCVETQVGLVFDNVEQLLEEQDLDPLYSKKTNIVEIYNFLSMTKKE 120

Query: 121 EIQHLKDMLKTSEEQNRHIQARIDVLKKGVEDASGMADAVEKVQ 165
           EIQHLKDMLKT+EEQN  IQ RID L+KGV+DASGMADAV+K++
Sbjct: 121 EIQHLKDMLKTAEEQNWVIQGRIDDLRKGVQDASGMADAVKKLR 164

[Close]

BLAST of Cp4.1LG01g01260 vs. TrEMBL
Match: V4T3P8_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012881mg PE=4 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 6.3e-44
Identity = 96/155 (61.94%), Postives = 123/155 (79.35%), Query Frame = 1


Query: 11  LSSSLIDLTKSFKLAVRSLLTSCSREEFRECFSGFTTAEQENLHRLFVQVITSLHGNIED 70
           + S   DL KSFKLA+RSLLT+CS+EEF + F  F+++EQ +LHRLFVQVITSLH NIE+
Sbjct: 9   IGSRQSDLNKSFKLAIRSLLTTCSKEEFGKAFDRFSSSEQNSLHRLFVQVITSLHENIEN 68

Query: 71  EFESLCIETQVGRVLDNVEQLLEEQDLDPLYSKKTNIMDIANYLSMTRKNEIQHLKDMLK 130
           EFESLC+ETQVG  LD VEQ +EEQ LDPL+S+KTN+MD+   L+  +KNEI +L  ML+
Sbjct: 69  EFESLCLETQVGAALDTVEQFMEEQSLDPLFSEKTNVMDVVCDLTTAKKNEICYLTCMLE 128

Query: 131 TSEEQNRHIQARIDVLKKGVEDASGMADAVEKVQL 166
             EEQNR  +AR+++LKKG +D SGM + VEK+QL
Sbjct: 129 RVEEQNRLRKARLELLKKGRQDFSGMTEVVEKLQL 163

[Close]

BLAST of Cp4.1LG01g01260 vs. TrEMBL
Match: B9N0P7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s24350g PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 1.1e-43
Identity = 96/162 (59.26%), Postives = 127/162 (78.40%), Query Frame = 1


Query: 6   EIGTPLSSSLIDLTKSFKLAVRSLLTSCSREEFRECFSGFTTAEQENLHRLFVQVITSLH 65
           +IG   S    DL +SFKLA+RSLLTSCS++E  + FS F+ AEQE+LHRLF+QVITSLH
Sbjct: 18  KIGGGGSRRQSDLNRSFKLAIRSLLTSCSKQELAKAFSKFSNAEQESLHRLFIQVITSLH 77

Query: 66  GNIEDEFESLCIETQVGRVLDNVEQLLEEQDLDPLYSKKTNIMDIANYLSMTRKNEIQHL 125
             +EDEFESLC+ETQVG  L+ VEQL+EEQ+LDPL+S+K+NIMD A  LSM +KNEI +L
Sbjct: 78  KMVEDEFESLCLETQVGTALETVEQLVEEQNLDPLFSEKSNIMDAAKSLSMEKKNEIHYL 137

Query: 126 KDMLKTSEEQNRHIQARIDVLKKGVEDASGMADAVEKVQLLF 168
             ML+ +EEQNR I+ R+++LK+ + D SG++  +EKV + F
Sbjct: 138 MGMLEKAEEQNRRIRDRVELLKQKMPDDSGISVVMEKVWISF 179

[Close]

BLAST of Cp4.1LG01g01260 vs. TrEMBL
Match: V4S9I0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012881mg PE=4 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 4.1e-43
Identity = 95/159 (59.75%), Postives = 124/159 (77.99%), Query Frame = 1


Query: 11  LSSSLIDLTKSFKLAVRSLLTSCSREEFRECFSGFTTAEQENLHRLFVQVITSLHGNIED 70
           + S   DL KSFKLA+RSLLT+CS+EEF + F  F+++EQ +LHRLFVQVITSLH NIE+
Sbjct: 9   IGSRQSDLNKSFKLAIRSLLTTCSKEEFGKAFDRFSSSEQNSLHRLFVQVITSLHENIEN 68

Query: 71  EFESLCIETQVGRVLDNVEQLLEEQDLDPLYSKKTNIMDIANYLSMTRKNEIQHLKDMLK 130
           EFESLC+ETQVG  LD VEQ +EEQ LDPL+S+KTN+MD+   L+  +KNEI +L  ML+
Sbjct: 69  EFESLCLETQVGAALDTVEQFMEEQSLDPLFSEKTNVMDVVCDLTTAKKNEICYLTCMLE 128

Query: 131 TSEEQNRHIQARIDVLKKGVEDASGMADAVEKVQLLFAF 170
             EEQNR  +AR+++LKKG +D SGM + VEK++   A+
Sbjct: 129 RVEEQNRLRKARLELLKKGRQDFSGMTEVVEKLRSGIAY 167

[Close]

BLAST of Cp4.1LG01g01260 vs. TrEMBL
Match: A0A067JYA6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23978 PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 2.9e-41
Identity = 94/155 (60.65%), Postives = 123/155 (79.35%), Query Frame = 1


Query: 10  PLSSSLIDLTKSFKLAVRSLLTSCSREEFRECFSGFTTAEQENLHRLFVQVITSLHGNIE 69
           P+SS   D ++SFKLA+RSLLTSC +EEF + FS F++ EQENLH LF+QVITSLH  IE
Sbjct: 4   PVSSRHSDFSQSFKLAIRSLLTSCPKEEFVKAFSNFSSKEQENLHYLFIQVITSLHKMIE 63

Query: 70  DEFESLCIETQVGRVLDNVEQLLEEQDLDPLYSKKTNIMDIANYLSMTRKNEIQHLKDML 129
           DEFESLC ETQV   LD V+QL+EEQ L+PL+SKKTNIMD+A  LS+ ++NEI+ L D L
Sbjct: 64  DEFESLCHETQVRTTLDTVDQLVEEQSLNPLFSKKTNIMDVARELSIAKENEIRFLTDTL 123

Query: 130 KTSEEQNRHIQARIDVLKKGVEDASGMADAVEKVQ 165
           + +E+QNR ++ RI++LKKG ++ SG  D VEK++
Sbjct: 124 EKAEKQNRLLRDRIELLKKGRQNVSGAID-VEKLR 157

[Close]

BLAST of Cp4.1LG01g01260 vs. TAIR10
Match: AT4G19350.1 (AT4G19350.1 embryo defective 3006)

HSP 1 Score: 150.2 bits (378), Expect = 1.1e-36
Identity = 82/163 (50.31%), Postives = 113/163 (69.33%), Query Frame = 1


Query: 1   MEKKHEIGTPLSSSLIDLTKSFKLAVRSLLTSCSREEFRECFSGFTTAEQENLHRLFVQV 60
           MEK         S    L KSFK  +R LLT+CS+++F + FS F+ AEQE L +L+ +V
Sbjct: 1   MEKPGHETDIAGSRRTHLKKSFKSTLRHLLTACSKQDFVDIFSKFSGAEQELLFQLYTRV 60

Query: 61  ITSLHGNIEDEFESLCIETQVGRVLDNVEQLLEEQDLDPLYSKKTNIMDIANYLSMTRKN 120
           + +LH  IE+EF+  C ETQVG +LD VE+L+EEQ LDPL+S KT++M IA  L+ ++KN
Sbjct: 61  VVNLHQTIEEEFDEQCHETQVGPILDTVEELVEEQSLDPLFSDKTDVMAIAYDLTTSKKN 120

Query: 121 EIQHLKDMLKTSEEQNRHIQARIDVLKKGVEDASGMADAVEKV 164
           EIQ L  +L+ +EEQNR  +ARI +LKK  +D SG AD +EK+
Sbjct: 121 EIQKLTVLLQRAEEQNRQKEARISMLKKQTQDLSGTADRIEKL 163

[Close]

BLAST of Cp4.1LG01g01260 vs. NCBI nr
Match: gi|659101941|ref|XP_008451871.1| (PREDICTED: uncharacterized protein LOC103493030 [Cucumis melo])

HSP 1 Score: 263.8 bits (673), Expect = 2.0e-67
Identity = 135/164 (82.32%), Postives = 151/164 (92.07%), Query Frame = 1


Query: 1   MEKKHEIGTPLSSSLIDLTKSFKLAVRSLLTSCSREEFRECFSGFTTAEQENLHRLFVQV 60
           M KKHEI TP++S  IDL KSFKLAVRSLLTSCSREEFRECFS FTTAEQ+ LHRLF+QV
Sbjct: 1   MGKKHEIDTPVTSRQIDLKKSFKLAVRSLLTSCSREEFRECFSRFTTAEQDYLHRLFIQV 60

Query: 61  ITSLHGNIEDEFESLCIETQVGRVLDNVEQLLEEQDLDPLYSKKTNIMDIANYLSMTRKN 120
           ITSLHGNIEDEFESLC+ETQVG VLDNVEQLLEEQDLDPLYSKKTNI++I+N+LSM +  
Sbjct: 61  ITSLHGNIEDEFESLCVETQVGLVLDNVEQLLEEQDLDPLYSKKTNIVEISNFLSMKKME 120

Query: 121 EIQHLKDMLKTSEEQNRHIQARIDVLKKGVEDASGMADAVEKVQ 165
           EIQHLKDMLKT+EEQNR IQ RIDVL+KGV+DASGMADAV+K++
Sbjct: 121 EIQHLKDMLKTAEEQNRVIQGRIDVLRKGVQDASGMADAVKKLR 164

[Close]

BLAST of Cp4.1LG01g01260 vs. NCBI nr
Match: gi|778691225|ref|XP_011653244.1| (PREDICTED: uncharacterized protein LOC101212745 [Cucumis sativus])

HSP 1 Score: 255.0 bits (650), Expect = 9.3e-65
Identity = 131/164 (79.88%), Postives = 147/164 (89.63%), Query Frame = 1


Query: 1   MEKKHEIGTPLSSSLIDLTKSFKLAVRSLLTSCSREEFRECFSGFTTAEQENLHRLFVQV 60
           M +KHE+  P+SS  IDL KSFKLAVR LLTSCSREEFRECFS FTTAEQ+ LHRLF+QV
Sbjct: 1   MGEKHELDAPVSSRQIDLKKSFKLAVRPLLTSCSREEFRECFSRFTTAEQDYLHRLFIQV 60

Query: 61  ITSLHGNIEDEFESLCIETQVGRVLDNVEQLLEEQDLDPLYSKKTNIMDIANYLSMTRKN 120
           ITSLHGNIEDEFESLC+ETQVG V DNVEQLLEEQDLDPLYSKKTNI++I N+LSMT+K 
Sbjct: 61  ITSLHGNIEDEFESLCVETQVGLVFDNVEQLLEEQDLDPLYSKKTNIVEIYNFLSMTKKE 120

Query: 121 EIQHLKDMLKTSEEQNRHIQARIDVLKKGVEDASGMADAVEKVQ 165
           EIQHLKDMLKT+EEQN  IQ RID L+KGV+DASGMADAV+K++
Sbjct: 121 EIQHLKDMLKTAEEQNWVIQGRIDDLRKGVQDASGMADAVKKLR 164

[Close]

BLAST of Cp4.1LG01g01260 vs. NCBI nr
Match: gi|567876603|ref|XP_006430891.1| (hypothetical protein CICLE_v10012881mg [Citrus clementina])

HSP 1 Score: 185.3 bits (469), Expect = 9.1e-44
Identity = 96/155 (61.94%), Postives = 123/155 (79.35%), Query Frame = 1


Query: 11  LSSSLIDLTKSFKLAVRSLLTSCSREEFRECFSGFTTAEQENLHRLFVQVITSLHGNIED 70
           + S   DL KSFKLA+RSLLT+CS+EEF + F  F+++EQ +LHRLFVQVITSLH NIE+
Sbjct: 9   IGSRQSDLNKSFKLAIRSLLTTCSKEEFGKAFDRFSSSEQNSLHRLFVQVITSLHENIEN 68

Query: 71  EFESLCIETQVGRVLDNVEQLLEEQDLDPLYSKKTNIMDIANYLSMTRKNEIQHLKDMLK 130
           EFESLC+ETQVG  LD VEQ +EEQ LDPL+S+KTN+MD+   L+  +KNEI +L  ML+
Sbjct: 69  EFESLCLETQVGAALDTVEQFMEEQSLDPLFSEKTNVMDVVCDLTTAKKNEICYLTCMLE 128

Query: 131 TSEEQNRHIQARIDVLKKGVEDASGMADAVEKVQL 166
             EEQNR  +AR+++LKKG +D SGM + VEK+QL
Sbjct: 129 RVEEQNRLRKARLELLKKGRQDFSGMTEVVEKLQL 163

[Close]

BLAST of Cp4.1LG01g01260 vs. NCBI nr
Match: gi|566168458|ref|XP_006385154.1| (hypothetical protein POPTR_0004s24350g [Populus trichocarpa])

HSP 1 Score: 184.5 bits (467), Expect = 1.5e-43
Identity = 96/162 (59.26%), Postives = 127/162 (78.40%), Query Frame = 1


Query: 6   EIGTPLSSSLIDLTKSFKLAVRSLLTSCSREEFRECFSGFTTAEQENLHRLFVQVITSLH 65
           +IG   S    DL +SFKLA+RSLLTSCS++E  + FS F+ AEQE+LHRLF+QVITSLH
Sbjct: 18  KIGGGGSRRQSDLNRSFKLAIRSLLTSCSKQELAKAFSKFSNAEQESLHRLFIQVITSLH 77

Query: 66  GNIEDEFESLCIETQVGRVLDNVEQLLEEQDLDPLYSKKTNIMDIANYLSMTRKNEIQHL 125
             +EDEFESLC+ETQVG  L+ VEQL+EEQ+LDPL+S+K+NIMD A  LSM +KNEI +L
Sbjct: 78  KMVEDEFESLCLETQVGTALETVEQLVEEQNLDPLFSEKSNIMDAAKSLSMEKKNEIHYL 137

Query: 126 KDMLKTSEEQNRHIQARIDVLKKGVEDASGMADAVEKVQLLF 168
             ML+ +EEQNR I+ R+++LK+ + D SG++  +EKV + F
Sbjct: 138 MGMLEKAEEQNRRIRDRVELLKQKMPDDSGISVVMEKVWISF 179

[Close]

BLAST of Cp4.1LG01g01260 vs. NCBI nr
Match: gi|568857589|ref|XP_006482347.1| (PREDICTED: uncharacterized protein LOC102612581 isoform X1 [Citrus sinensis])

HSP 1 Score: 183.7 bits (465), Expect = 2.6e-43
Identity = 94/155 (60.65%), Postives = 124/155 (80.00%), Query Frame = 1


Query: 11  LSSSLIDLTKSFKLAVRSLLTSCSREEFRECFSGFTTAEQENLHRLFVQVITSLHGNIED 70
           + S   DL KSFKLA+RSLLT+CS+EEF + F  F+++EQ +LHRLF QVITSLH NIE+
Sbjct: 9   IGSRQSDLNKSFKLAIRSLLTTCSKEEFGKAFDRFSSSEQNSLHRLFFQVITSLHENIEN 68

Query: 71  EFESLCIETQVGRVLDNVEQLLEEQDLDPLYSKKTNIMDIANYLSMTRKNEIQHLKDMLK 130
           EFESLC+ETQVG  LD VEQ +EEQ+LDPL+S+KTN+MD+   L+  +KNEI +L  +L+
Sbjct: 69  EFESLCLETQVGAALDTVEQFVEEQNLDPLFSEKTNVMDVVCDLTTAKKNEICYLTCILE 128

Query: 131 TSEEQNRHIQARIDVLKKGVEDASGMADAVEKVQL 166
             EEQNR ++AR+++LKKG +D SGM + VEK+QL
Sbjct: 129 RVEEQNRLLKARLELLKKGRQDFSGMTEVVEKLQL 163

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g01260 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG01g01260 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KV94_CUCSA	6.5e-65	79.88	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G056590 PE=4 SV=1	[more]
V4T3P8_9ROSI	6.3e-44	61.94	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012881mg PE=4 SV=1	[more]
B9N0P7_POPTR	1.1e-43	59.26	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s24350g PE=4 SV=1	[more]
V4S9I0_9ROSI	4.1e-43	59.75	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012881mg PE=4 SV=1	[more]
A0A067JYA6_JATCU	2.9e-41	60.65	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23978 PE=4 SV=1	[more]

BLAST of Cp4.1LG01g01260 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G19350.1	1.1e-36	50.31	embryo defective 3006	[more]

BLAST of Cp4.1LG01g01260 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659101941\|ref\|XP_008451871.1\|	2.0e-67	82.32	PREDICTED: uncharacterized protein LOC103493030 [Cucumis melo]	[more]
gi\|778691225\|ref\|XP_011653244.1\|	9.3e-65	79.88	PREDICTED: uncharacterized protein LOC101212745 [Cucumis sativus]	[more]
gi\|567876603\|ref\|XP_006430891.1\|	9.1e-44	61.94	hypothetical protein CICLE_v10012881mg [Citrus clementina]	[more]
gi\|566168458\|ref\|XP_006385154.1\|	1.5e-43	59.26	hypothetical protein POPTR_0004s24350g [Populus trichocarpa]	[more]
gi\|568857589\|ref\|XP_006482347.1\|	2.6e-43	60.65	PREDICTED: uncharacterized protein LOC102612581 isoform X1 [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007128	PMF1/Nnf1

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0000818	nuclear MIS12/MIND complex
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g01260.1	Cp4.1LG01g01260.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007128	Polyamine-modulated factor 1/Kinetochore protein NNF1	PFAM	PF03980	Nnf1	coord: 52..144 score: 1.
None	No IPR available	unknown	Coil	Coil	coord: 122..142 scor
None	No IPR available	PANTHER	PTHR15459	FAMILY NOT NAMED	coord: 13..163 score: 6.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG01g01260	CmaCh16G005060	Cucurbita maxima (Rimu)	cmacpeB353
Cp4.1LG01g01260	CmaCh04G006000	Cucurbita maxima (Rimu)	cmacpeB720
Cp4.1LG01g01260	CmoCh16G005540	Cucurbita moschata (Rifu)	cmocpeB315
Cp4.1LG01g01260	CmoCh04G006420	Cucurbita moschata (Rifu)	cmocpeB673
Cp4.1LG01g01260	Cla005458	Watermelon (97103) v1	cpewmB419
Cp4.1LG01g01260	Csa4G056590	Cucumber (Chinese Long) v2	cpecuB399
Cp4.1LG01g01260	MELO3C016218	Melon (DHL92) v3.5.1	cpemeB417
Cp4.1LG01g01260	ClCG07G011120	Watermelon (Charleston Gray)	cpewcgB411
Cp4.1LG01g01260	CSPI04G06920	Wild cucumber (PI 183967)	cpecpiB396
Cp4.1LG01g01260	Lsi07G007750	Bottle gourd (USVL1VR-Ls)	cpelsiB372
Cp4.1LG01g01260	MELO3C016218.2	Melon (DHL92) v3.6.1	cpemedB488
Cp4.1LG01g01260	CsaV3_4G007130	Cucumber (Chinese Long) v3	cpecucB0496
Cp4.1LG01g01260	Bhi01G002358	Wax gourd	cpewgoB0509
Cp4.1LG01g01260	CsGy4G006850	Cucumber (Gy14) v2	cgybcpeB501
Cp4.1LG01g01260	Carg11422	Silver-seed gourd	carcpeB0929
Cp4.1LG01g01260	Carg13145	Silver-seed gourd	carcpeB0061

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG01g01260	Cp4.1LG14g02780	Cucurbita pepo (Zucchini)	cpecpeB236

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG01g01260	Melon (DHL92) v3.5.1	cpemeB426