CmaCh16G005060 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh16G005060
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Embryo defective 3006 protein, putative
Location	Cma_Chr16 : 2604070 .. 2607982 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATAAGAAGCACGAGATTGGTACGCCGGTGAGCTCCAGCCAGATCGATCTGAAAAAGTCATTCAAGCTTGCTGTTCGTTCTCTTCTCACTTCCTGTTCCAGGGGGGTAAGAACGAAAGTTTCTGCAATATGTATAATGTCTTGTTCATACTTTTTATGGAAATGGTGCGGAATTGGTACTTAGGAATGAGAATTTGCATTCCAACTGGAAATTTGGTCACGAGAGATTTTTTAGGCTACTTTTATTTTGAAGGAGATGGTAAAATTTCTATAGTTGTGCTTTTTTGTTACATAATTAAGGAGTTCCGGGAATGCTTTTCGAGATTTACGACTGCGGAGCAAGAATATCTTCATCGTCTTTTCATTCAGGTATTAGTATGCTGCCTTTTATGCTCCCTGCTCCCTCTCCGGAAATCTGAGGTGAAAGCAAACTAGTATCATTTGGACACAATGTAATTATTTAACTTAAATTGGAGCATGCCGAGCTTATTGTAATACAGTTCTAGGACGTTTTCTTGCTTAGATCCTTCATAATTTTGTTGCATGTGCAAATCCTGTACTGTCTTAAATGGTTAACAATGTTATTTGCTTTACTTGTTTAGAATTTGCATATTTTCTTATTGCTTCTAGTCTCCTTGGTCATTGGAATAATGAATTGTGGTGTTCATTAAACTTTCAGGTTATAACTTCTTTGCATGGAAACATAGAGGTATATTTCTATTCAAGACTTTGCTTCAGAATCCATCCTGATAATTCCATTTCGGGAATTCTTAATTAGTAATGTGATTATGTTTCTTCCTGTGTGTGTATATATTGTGAGATCTAACCGTGGTTGGAGAGGGTAACGAAGCATTTCTTATAAGGGTGTGGAAACCTCTCCCTAGTAGACGCATTTTAAATTTGTGAGGCTGAAGGTGATATGTAATGATCTAAAGCGGACACTATCTACTAGCAATGAGCTTAGGTCATTACATACATACTTATATATATATGTATGTACATATACACGGTAACTAGAAGGTAAATAGAAGATAGGCGTACATGTTAACCAAAAATTTGATTACATTCTTTTTCTGAAGTGTTAAAGGAATGGGAAAGGAAAATTTTCTAAAAAATATGTAAAAAGTGGTGAATATTTTCTTTCGGTACAGTGCAGCGTCCTCAGTGGGATGCAAAAAGCAACCCAGGCAACCACCTGAGAGAAGGTGCTTGCCATAGACTAGTGCAGTCTATGTCACCCATTGCAGTAGGCAATCACATAAGCTTGTCTCAAAATAAATCTCACAATAAGCTTCTCTCCTATTACATTATGTGATCGTCAACAGCATTTCATTTTTAATTCTTTTTTTTACATATTGCAATTTTTGGTCAATAACACTACCATTTTCTGAAATGTTCAGGACGAGTTTGAGTCATTATGTGTTGAAACAAAGGTAATTCTCCTGCCTCTAACAACGAAATAATACTTCTTTTTATTCCTTTTTCAGTACATATATATTTCAAGGTATGGCATGATTCCTTGGTCAGGTTCAATATGATTAAGGGGAGGACCTTCATTGAAACTATTGATATATTAGTTTTGAAAAACTCAACTTAGTTTCAATGTGTAAGATATCGGAGTCCAAACAAGCAATCACGGGTTTCAATTAAAAAAAATAAGAAAAACATGAGTGATGAGAAAGAACTAGTAAAATGGGTGAGTTGATCATGATGGTAAATGTTATCGACATTATGTAATGTTTCATGCTATAAAATGATTATCTTCTCCTCAATTTCCAATTTTATATGTTGGGATTTGTTTGAAGTGATGTATTGCTAGCCATTTGTGTCTGTATGCAGATGACTTTCCCTCTTAACATCGTGTCACTGTTCTGCTTGCATTATAATAGTTTTGCATTATGCAGGTGGGACTTGTACTTGATAATGTTGAACAACTTTTGGAAGAGCAAGATCTAGACCCATTGTATTCCAAAAAGTAGGTATCTTCTGCTGCAAGGTTATTTTCTGGATCATATTTTAATTTTCTAATTAGATATTGGCTAAAAAGATACTTTTGATCCTACAACTTTCATGAAAATAATTAGTTTTTGAACTTTAATTTATAATAAATTAGCCTAATACTTTCAATTTTGTGACAATTTAGTTTTTTTAGCCTAATACTTTCAATTTTGTGACAATTTAGTTTTTAAACTTTAATATTTGTCCTTAATAGTTTAAAACTTATGACAATAACATAACAAATCTTATCAAATTTAAGTGTGAATTTCTTTTTATAAAATTTTTATGACGGAAAGACTTTGTCTTGGTTGGTTATGAACCCATTTGGTCCAAAATAAGTTAATCTATCAATATATGAAAAGTGATTAAATATTTACAATAATTTTTACAATGGAATCTAAATTGTTATAAATTTTTTAATTACGTGAACTAGATTGATATAAAATTTAAAGTAAGAGGTCAAAATTGTTACAAACTAAAATTTAGGAATTAACCGGTTAAGTTTAGAAACTAATATTTTTTAAATCTTAAATATATTTTATGAATGAAGAATCACTTGAAACACACGATGATTATACAACAGTTAGAATGTTAACTAGGCTAAACCCTTCTGTTATAACACTTTTAGTGAAATAGAAGTATAAATTTTGTGACATTTCTGTTCGAGAATTTGATTGCGATGATTATTATAATTGGGAGATGGTTTGTACATTTTGTAATACACTACTTATGGCGTCGTGGGTACAATTGTAAAATTCTTTGTAAATTTGTGGTTAAATGCCCTCGTATTCCCTTCTAGTTTTTCTTTTTTGTGCAATGGGATGGGAATGGGGTTTCACAGTCGTCGGGTTTTCATAGCTTTACATAATGGAAATTGCAGGACAAACATAATGGAAATTGCCAATTATCTATCCATGACAAAGAAGAATGAGATCCAACACTTGAAGGACATGCTAAAAACGGTGAGCAACACTTGTAACTAATCAAACCAACTTAACTCATCTTTTCTTCATCAGTAAATCTAAATAAAGGTTTTCTCTAGGCTGAGGAACAGAACCGGCATGTTCAAGGCCGTATTGATATCCTAAGGAAAGGAGTGCAAGATGCCTCGGCCATGGAAGATGCTGTTGAAAAGGTGCAGTTTTTATTTGGTTACCTTTTTCCACCTCTTCCAAATGGATAAATAATTTAAGAATGCTGACGAAAGTAAACTTTGATTGCCTATCAAACATCAAAAATCCAGAATGCTAACCAAACATGCTTAAACCATTGCAAAGAAATTCAAACTCAACACATAGTTTCTAACCTGTATATCTGAACTCATGCAATCGTCCACAGCTAAGAAACAGATGCAGAGCTTATGCAGATGATGGTGTTAGCAGGACCACCTTCGATACTTAACCGATGCTCCTCCGACTCGCTGTTTCCATCCCATGTGTTTACATCCAAGAATTGCTGTTAAATAACCAGGTCAGTATTTAATCTAGTACTAGATTTCACTTGGGTAGTTTTATGTGCCAATTTCTTCAGCTTAGCTCAAGCTTTATATTTATTATTTATGTCACGTCTGCAATTTGACATGTTTTATTCTGTATAATTCATACACTGTATTGTAACAAAGGAATATTAAATGCCCCATCAAGCATCAGCTATGTTAGAACTCTATATGGCCCTTGTTTTTCTCTTTCACTCTCTACTAGGGATATCTTTGGTAGGCTTTAACATCCTCTTTGCAATGGAATTTGTACACGCAATTCATGATGAGTCGAAAATGTATGGGCAACATCTCATAAAGGACACCCTAACCATTAGTATTTTTTTTATGATGCAAACATTCCACGATTAGATGCTTACGTAGTATATACATCTATATATTAGATATTTATGTGTATGTGGTGTAGGTGTCATTATGA

mRNA sequence

ATGGATAAGAAGCACGAGATTGGTACGCCGGTGAGCTCCAGCCAGATCGATCTGAAAAAGTCATTCAAGCTTGCTGTTCGTTCTCTTCTCACTTCCTGTTCCAGGGGGGAGTTCCGGGAATGCTTTTCGAGATTTACGACTGCGGAGCAAGAATATCTTCATCGTCTTTTCATTCAGGTTATAACTTCTTTGCATGGAAACATAGAGGACGAGTTTGAGTCATTATGTGTTGAAACAAAGGTGGGACTTGTACTTGATAATGTTGAACAACTTTTGGAAGAGCAAGATCTAGACCCATTGTATTCCAAAAAGACAAACATAATGGAAATTGCCAATTATCTATCCATGACAAAGAAGAATGAGATCCAACACTTGAAGGACATGCTAAAAACGGCTGAGGAACAGAACCGGCATGTTCAAGGCCGTATTGATATCCTAAGGAAAGGAGTGCAAGATGCCTCGGCCATGGAAGATGCTGTTGAAAAGGTGTCATTATGA

Coding sequence (CDS)

ATGGATAAGAAGCACGAGATTGGTACGCCGGTGAGCTCCAGCCAGATCGATCTGAAAAAGTCATTCAAGCTTGCTGTTCGTTCTCTTCTCACTTCCTGTTCCAGGGGGGAGTTCCGGGAATGCTTTTCGAGATTTACGACTGCGGAGCAAGAATATCTTCATCGTCTTTTCATTCAGGTTATAACTTCTTTGCATGGAAACATAGAGGACGAGTTTGAGTCATTATGTGTTGAAACAAAGGTGGGACTTGTACTTGATAATGTTGAACAACTTTTGGAAGAGCAAGATCTAGACCCATTGTATTCCAAAAAGACAAACATAATGGAAATTGCCAATTATCTATCCATGACAAAGAAGAATGAGATCCAACACTTGAAGGACATGCTAAAAACGGCTGAGGAACAGAACCGGCATGTTCAAGGCCGTATTGATATCCTAAGGAAAGGAGTGCAAGATGCCTCGGCCATGGAAGATGCTGTTGAAAAGGTGTCATTATGA

Protein sequence

MDKKHEIGTPVSSSQIDLKKSFKLAVRSLLTSCSRGEFRECFSRFTTAEQEYLHRLFIQVITSLHGNIEDEFESLCVETKVGLVLDNVEQLLEEQDLDPLYSKKTNIMEIANYLSMTKKNEIQHLKDMLKTAEEQNRHVQGRIDILRKGVQDASAMEDAVEKVSL

Homology

[Close]

BLAST of CmaCh16G005060 vs. TrEMBL
Match: A0A0A0KV94_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G056590 PE=4 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 2.5e-69
Identity = 140/163 (85.89%), Postives = 149/163 (91.41%), Query Frame = 1


Query: 1   MDKKHEIGTPVSSSQIDLKKSFKLAVRSLLTSCSRGEFRECFSRFTTAEQEYLHRLFIQV 60
           M +KHE+  PVSS QIDLKKSFKLAVR LLTSCSR EFRECFSRFTTAEQ+YLHRLFIQV
Sbjct: 1   MGEKHELDAPVSSRQIDLKKSFKLAVRPLLTSCSREEFRECFSRFTTAEQDYLHRLFIQV 60

Query: 61  ITSLHGNIEDEFESLCVETKVGLVLDNVEQLLEEQDLDPLYSKKTNIMEIANYLSMTKKN 120
           ITSLHGNIEDEFESLCVET+VGLV DNVEQLLEEQDLDPLYSKKTNI+EI N+LSMTKK 
Sbjct: 61  ITSLHGNIEDEFESLCVETQVGLVFDNVEQLLEEQDLDPLYSKKTNIVEIYNFLSMTKKE 120

Query: 121 EIQHLKDMLKTAEEQNRHVQGRIDILRKGVQDASAMEDAVEKV 164
           EIQHLKDMLKTAEEQN  +QGRID LRKGVQDAS M DAV+K+
Sbjct: 121 EIQHLKDMLKTAEEQNWVIQGRIDDLRKGVQDASGMADAVKKL 163

[Close]

BLAST of CmaCh16G005060 vs. TrEMBL
Match: B9N0P7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s24350g PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 1.5e-42
Identity = 94/158 (59.49%), Postives = 123/158 (77.85%), Query Frame = 1


Query: 6   EIGTPVSSSQIDLKKSFKLAVRSLLTSCSRGEFRECFSRFTTAEQEYLHRLFIQVITSLH 65
           +IG   S  Q DL +SFKLA+RSLLTSCS+ E  + FS+F+ AEQE LHRLFIQVITSLH
Sbjct: 18  KIGGGGSRRQSDLNRSFKLAIRSLLTSCSKQELAKAFSKFSNAEQESLHRLFIQVITSLH 77

Query: 66  GNIEDEFESLCVETKVGLVLDNVEQLLEEQDLDPLYSKKTNIMEIANYLSMTKKNEIQHL 125
             +EDEFESLC+ET+VG  L+ VEQL+EEQ+LDPL+S+K+NIM+ A  LSM KKNEI +L
Sbjct: 78  KMVEDEFESLCLETQVGTALETVEQLVEEQNLDPLFSEKSNIMDAAKSLSMEKKNEIHYL 137

Query: 126 KDMLKTAEEQNRHVQGRIDILRKGVQDASAMEDAVEKV 164
             ML+ AEEQNR ++ R+++L++ + D S +   +EKV
Sbjct: 138 MGMLEKAEEQNRRIRDRVELLKQKMPDDSGISVVMEKV 175

[Close]

BLAST of CmaCh16G005060 vs. TrEMBL
Match: V4T3P8_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012881mg PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 2.6e-42
Identity = 92/155 (59.35%), Postives = 120/155 (77.42%), Query Frame = 1


Query: 11  VSSSQIDLKKSFKLAVRSLLTSCSRGEFRECFSRFTTAEQEYLHRLFIQVITSLHGNIED 70
           + S Q DL KSFKLA+RSLLT+CS+ EF + F RF+++EQ  LHRLF+QVITSLH NIE+
Sbjct: 9   IGSRQSDLNKSFKLAIRSLLTTCSKEEFGKAFDRFSSSEQNSLHRLFVQVITSLHENIEN 68

Query: 71  EFESLCVETKVGLVLDNVEQLLEEQDLDPLYSKKTNIMEIANYLSMTKKNEIQHLKDMLK 130
           EFESLC+ET+VG  LD VEQ +EEQ LDPL+S+KTN+M++   L+  KKNEI +L  ML+
Sbjct: 69  EFESLCLETQVGAALDTVEQFMEEQSLDPLFSEKTNVMDVVCDLTTAKKNEICYLTCMLE 128

Query: 131 TAEEQNRHVQGRIDILRKGVQDASAMEDAVEKVSL 166
             EEQNR  + R+++L+KG QD S M + VEK+ L
Sbjct: 129 RVEEQNRLRKARLELLKKGRQDFSGMTEVVEKLQL 163

[Close]

BLAST of CmaCh16G005060 vs. TrEMBL
Match: V4S9I0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012881mg PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 7.5e-42
Identity = 91/153 (59.48%), Postives = 119/153 (77.78%), Query Frame = 1


Query: 11  VSSSQIDLKKSFKLAVRSLLTSCSRGEFRECFSRFTTAEQEYLHRLFIQVITSLHGNIED 70
           + S Q DL KSFKLA+RSLLT+CS+ EF + F RF+++EQ  LHRLF+QVITSLH NIE+
Sbjct: 9   IGSRQSDLNKSFKLAIRSLLTTCSKEEFGKAFDRFSSSEQNSLHRLFVQVITSLHENIEN 68

Query: 71  EFESLCVETKVGLVLDNVEQLLEEQDLDPLYSKKTNIMEIANYLSMTKKNEIQHLKDMLK 130
           EFESLC+ET+VG  LD VEQ +EEQ LDPL+S+KTN+M++   L+  KKNEI +L  ML+
Sbjct: 69  EFESLCLETQVGAALDTVEQFMEEQSLDPLFSEKTNVMDVVCDLTTAKKNEICYLTCMLE 128

Query: 131 TAEEQNRHVQGRIDILRKGVQDASAMEDAVEKV 164
             EEQNR  + R+++L+KG QD S M + VEK+
Sbjct: 129 RVEEQNRLRKARLELLKKGRQDFSGMTEVVEKL 161

[Close]

BLAST of CmaCh16G005060 vs. TrEMBL
Match: A0A0D2T2S6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G218800 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 4.9e-41
Identity = 94/165 (56.97%), Postives = 121/165 (73.33%), Query Frame = 1


Query: 1   MDKKHEIG--TPVSSSQIDLKKSFKLAVRSLLTSCSRGEFRECFSRFTTAEQEYLHRLFI 60
           MD ++  G  T +   Q DLKKSFKLAVRSLLT+C   EF + F +F++ EQE+LH+LFI
Sbjct: 1   MDSRNGGGPVTTIGKRQSDLKKSFKLAVRSLLTTCPTQEFSKAFPKFSSIEQEHLHQLFI 60

Query: 61  QVITSLHGNIEDEFESLCVETKVGLVLDNVEQLLEEQDLDPLYSKKTNIMEIANYLSMTK 120
           QVITSLHGNIEDEFESLC ET+VG  LD VEQL+EEQ LDPL S +TN+M+  + LS  K
Sbjct: 61  QVITSLHGNIEDEFESLCNETQVGDALDTVEQLVEEQSLDPLSSDRTNVMDAVHNLSAAK 120

Query: 121 KNEIQHLKDMLKTAEEQNRHVQGRIDILRKGVQDASAMEDAVEKV 164
           K EI +L+ +L+ AEE NR +Q R+D+LR   Q+   ++D + KV
Sbjct: 121 KAEIHYLRGLLERAEEHNRLIQARVDLLRNKTQEVPDIKDFIGKV 165

[Close]

BLAST of CmaCh16G005060 vs. TAIR10
Match: AT4G19350.1 (AT4G19350.1 embryo defective 3006)

HSP 1 Score: 149.1 bits (375), Expect = 2.5e-36
Identity = 78/152 (51.32%), Postives = 110/152 (72.37%), Query Frame = 1


Query: 13  SSQIDLKKSFKLAVRSLLTSCSRGEFRECFSRFTTAEQEYLHRLFIQVITSLHGNIEDEF 72
           S +  LKKSFK  +R LLT+CS+ +F + FS+F+ AEQE L +L+ +V+ +LH  IE+EF
Sbjct: 13  SRRTHLKKSFKSTLRHLLTACSKQDFVDIFSKFSGAEQELLFQLYTRVVVNLHQTIEEEF 72

Query: 73  ESLCVETKVGLVLDNVEQLLEEQDLDPLYSKKTNIMEIANYLSMTKKNEIQHLKDMLKTA 132
           +  C ET+VG +LD VE+L+EEQ LDPL+S KT++M IA  L+ +KKNEIQ L  +L+ A
Sbjct: 73  DEQCHETQVGPILDTVEELVEEQSLDPLFSDKTDVMAIAYDLTTSKKNEIQKLTVLLQRA 132

Query: 133 EEQNRHVQGRIDILRKGVQDASAMEDAVEKVS 165
           EEQNR  + RI +L+K  QD S   D +EK++
Sbjct: 133 EEQNRQKEARISMLKKQTQDLSGTADRIEKLN 164

[Close]

BLAST of CmaCh16G005060 vs. NCBI nr
Match: gi|659101941|ref|XP_008451871.1| (PREDICTED: uncharacterized protein LOC103493030 [Cucumis melo])

HSP 1 Score: 278.1 bits (710), Expect = 1.0e-71
Identity = 143/163 (87.73%), Postives = 153/163 (93.87%), Query Frame = 1


Query: 1   MDKKHEIGTPVSSSQIDLKKSFKLAVRSLLTSCSRGEFRECFSRFTTAEQEYLHRLFIQV 60
           M KKHEI TPV+S QIDLKKSFKLAVRSLLTSCSR EFRECFSRFTTAEQ+YLHRLFIQV
Sbjct: 1   MGKKHEIDTPVTSRQIDLKKSFKLAVRSLLTSCSREEFRECFSRFTTAEQDYLHRLFIQV 60

Query: 61  ITSLHGNIEDEFESLCVETKVGLVLDNVEQLLEEQDLDPLYSKKTNIMEIANYLSMTKKN 120
           ITSLHGNIEDEFESLCVET+VGLVLDNVEQLLEEQDLDPLYSKKTNI+EI+N+LSM K  
Sbjct: 61  ITSLHGNIEDEFESLCVETQVGLVLDNVEQLLEEQDLDPLYSKKTNIVEISNFLSMKKME 120

Query: 121 EIQHLKDMLKTAEEQNRHVQGRIDILRKGVQDASAMEDAVEKV 164
           EIQHLKDMLKTAEEQNR +QGRID+LRKGVQDAS M DAV+K+
Sbjct: 121 EIQHLKDMLKTAEEQNRVIQGRIDVLRKGVQDASGMADAVKKL 163

[Close]

BLAST of CmaCh16G005060 vs. NCBI nr
Match: gi|778691225|ref|XP_011653244.1| (PREDICTED: uncharacterized protein LOC101212745 [Cucumis sativus])

HSP 1 Score: 269.6 bits (688), Expect = 3.6e-69
Identity = 140/163 (85.89%), Postives = 149/163 (91.41%), Query Frame = 1


Query: 1   MDKKHEIGTPVSSSQIDLKKSFKLAVRSLLTSCSRGEFRECFSRFTTAEQEYLHRLFIQV 60
           M +KHE+  PVSS QIDLKKSFKLAVR LLTSCSR EFRECFSRFTTAEQ+YLHRLFIQV
Sbjct: 1   MGEKHELDAPVSSRQIDLKKSFKLAVRPLLTSCSREEFRECFSRFTTAEQDYLHRLFIQV 60

Query: 61  ITSLHGNIEDEFESLCVETKVGLVLDNVEQLLEEQDLDPLYSKKTNIMEIANYLSMTKKN 120
           ITSLHGNIEDEFESLCVET+VGLV DNVEQLLEEQDLDPLYSKKTNI+EI N+LSMTKK 
Sbjct: 61  ITSLHGNIEDEFESLCVETQVGLVFDNVEQLLEEQDLDPLYSKKTNIVEIYNFLSMTKKE 120

Query: 121 EIQHLKDMLKTAEEQNRHVQGRIDILRKGVQDASAMEDAVEKV 164
           EIQHLKDMLKTAEEQN  +QGRID LRKGVQDAS M DAV+K+
Sbjct: 121 EIQHLKDMLKTAEEQNWVIQGRIDDLRKGVQDASGMADAVKKL 163

[Close]

BLAST of CmaCh16G005060 vs. NCBI nr
Match: gi|566168458|ref|XP_006385154.1| (hypothetical protein POPTR_0004s24350g [Populus trichocarpa])

HSP 1 Score: 180.6 bits (457), Expect = 2.2e-42
Identity = 94/158 (59.49%), Postives = 123/158 (77.85%), Query Frame = 1


Query: 6   EIGTPVSSSQIDLKKSFKLAVRSLLTSCSRGEFRECFSRFTTAEQEYLHRLFIQVITSLH 65
           +IG   S  Q DL +SFKLA+RSLLTSCS+ E  + FS+F+ AEQE LHRLFIQVITSLH
Sbjct: 18  KIGGGGSRRQSDLNRSFKLAIRSLLTSCSKQELAKAFSKFSNAEQESLHRLFIQVITSLH 77

Query: 66  GNIEDEFESLCVETKVGLVLDNVEQLLEEQDLDPLYSKKTNIMEIANYLSMTKKNEIQHL 125
             +EDEFESLC+ET+VG  L+ VEQL+EEQ+LDPL+S+K+NIM+ A  LSM KKNEI +L
Sbjct: 78  KMVEDEFESLCLETQVGTALETVEQLVEEQNLDPLFSEKSNIMDAAKSLSMEKKNEIHYL 137

Query: 126 KDMLKTAEEQNRHVQGRIDILRKGVQDASAMEDAVEKV 164
             ML+ AEEQNR ++ R+++L++ + D S +   +EKV
Sbjct: 138 MGMLEKAEEQNRRIRDRVELLKQKMPDDSGISVVMEKV 175

[Close]

BLAST of CmaCh16G005060 vs. NCBI nr
Match: gi|567876603|ref|XP_006430891.1| (hypothetical protein CICLE_v10012881mg [Citrus clementina])

HSP 1 Score: 179.9 bits (455), Expect = 3.7e-42
Identity = 92/155 (59.35%), Postives = 120/155 (77.42%), Query Frame = 1


Query: 11  VSSSQIDLKKSFKLAVRSLLTSCSRGEFRECFSRFTTAEQEYLHRLFIQVITSLHGNIED 70
           + S Q DL KSFKLA+RSLLT+CS+ EF + F RF+++EQ  LHRLF+QVITSLH NIE+
Sbjct: 9   IGSRQSDLNKSFKLAIRSLLTTCSKEEFGKAFDRFSSSEQNSLHRLFVQVITSLHENIEN 68

Query: 71  EFESLCVETKVGLVLDNVEQLLEEQDLDPLYSKKTNIMEIANYLSMTKKNEIQHLKDMLK 130
           EFESLC+ET+VG  LD VEQ +EEQ LDPL+S+KTN+M++   L+  KKNEI +L  ML+
Sbjct: 69  EFESLCLETQVGAALDTVEQFMEEQSLDPLFSEKTNVMDVVCDLTTAKKNEICYLTCMLE 128

Query: 131 TAEEQNRHVQGRIDILRKGVQDASAMEDAVEKVSL 166
             EEQNR  + R+++L+KG QD S M + VEK+ L
Sbjct: 129 RVEEQNRLRKARLELLKKGRQDFSGMTEVVEKLQL 163

[Close]

BLAST of CmaCh16G005060 vs. NCBI nr
Match: gi|729328777|ref|XP_010535940.1| (PREDICTED: uncharacterized protein LOC104811080 [Tarenaya hassleriana])

HSP 1 Score: 179.5 bits (454), Expect = 4.8e-42
Identity = 94/157 (59.87%), Postives = 123/157 (78.34%), Query Frame = 1


Query: 7   IGTPVSSSQIDLKKSFKLAVRSLLTSCSRGEFRECFSRFTTAEQEYLHRLFIQVITSLHG 66
           +G P  S Q+DL KSFKLAVRSLLT+CS+ +F + FS+F+ AEQ+ L+ L+IQVI SL+ 
Sbjct: 8   MGIP-GSRQVDLNKSFKLAVRSLLTACSKQDFVKAFSKFSGAEQDRLYGLYIQVIASLYQ 67

Query: 67  NIEDEFESLCVETKVGLVLDNVEQLLEEQDLDPLYSKKTNIMEIANYLSMTKKNEIQHLK 126
           NIE+EFE+LC ET+VG +LD VEQL EEQ LDPLY+ KTN+M+IA  LS  KK EIQ L 
Sbjct: 68  NIENEFEALCQETQVGAILDTVEQLAEEQSLDPLYTDKTNVMDIAKDLSTAKKQEIQQLT 127

Query: 127 DMLKTAEEQNRHVQGRIDILRKGVQDASAMEDAVEKV 164
           D+L+ AEE NR ++ R+++LRK  Q++S M DAVEK+
Sbjct: 128 DLLQRAEEHNRLMEARVNLLRKKAQESSGMADAVEKI 163

The following BLAST results are available for this feature:

BLAST of CmaCh16G005060 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh16G005060 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KV94_CUCSA	2.5e-69	85.89	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G056590 PE=4 SV=1	[more]
B9N0P7_POPTR	1.5e-42	59.49	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s24350g PE=4 SV=1	[more]
V4T3P8_9ROSI	2.6e-42	59.35	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012881mg PE=4 SV=1	[more]
V4S9I0_9ROSI	7.5e-42	59.48	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012881mg PE=4 SV=1	[more]
A0A0D2T2S6_GOSRA	4.9e-41	56.97	Uncharacterized protein OS=Gossypium raimondii GN=B456_008G218800 PE=4 SV=1	[more]

BLAST of CmaCh16G005060 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G19350.1	2.5e-36	51.32	embryo defective 3006	[more]

BLAST of CmaCh16G005060 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659101941\|ref\|XP_008451871.1\|	1.0e-71	87.73	PREDICTED: uncharacterized protein LOC103493030 [Cucumis melo]	[more]
gi\|778691225\|ref\|XP_011653244.1\|	3.6e-69	85.89	PREDICTED: uncharacterized protein LOC101212745 [Cucumis sativus]	[more]
gi\|566168458\|ref\|XP_006385154.1\|	2.2e-42	59.49	hypothetical protein POPTR_0004s24350g [Populus trichocarpa]	[more]
gi\|567876603\|ref\|XP_006430891.1\|	3.7e-42	59.35	hypothetical protein CICLE_v10012881mg [Citrus clementina]	[more]
gi\|729328777\|ref\|XP_010535940.1\|	4.8e-42	59.87	PREDICTED: uncharacterized protein LOC104811080 [Tarenaya hassleriana]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007128	PMF1/Nnf1

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0000818	nuclear MIS12/MIND complex
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh16G005060.1	CmaCh16G005060.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007128	Polyamine-modulated factor 1/Kinetochore protein NNF1	PFAM	PF03980	Nnf1	coord: 54..147 score: 8.
None	No IPR available	unknown	Coil	Coil	coord: 115..142 scor
None	No IPR available	PANTHER	PTHR15459	FAMILY NOT NAMED	coord: 18..164 score: 1.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh16G005060	Cucsa.228800	Cucumber (Gy14) v1	cgycmaB0636
CmaCh16G005060	Cla005458	Watermelon (97103) v1	cmawmB308
CmaCh16G005060	Csa4G056590	Cucumber (Chinese Long) v2	cmacuB337
CmaCh16G005060	MELO3C016218	Melon (DHL92) v3.5.1	cmameB305
CmaCh16G005060	ClCG07G011120	Watermelon (Charleston Gray)	cmawcgB300
CmaCh16G005060	CSPI04G06920	Wild cucumber (PI 183967)	cmacpiB342
CmaCh16G005060	CmoCh04G006420	Cucurbita moschata (Rifu)	cmacmoB340
CmaCh16G005060	CmoCh16G005540	Cucurbita moschata (Rifu)	cmacmoB322
CmaCh16G005060	Lsi07G007750	Bottle gourd (USVL1VR-Ls)	cmalsiB325
CmaCh16G005060	Cp4.1LG14g02780	Cucurbita pepo (Zucchini)	cmacpeB344
CmaCh16G005060	Cp4.1LG01g01260	Cucurbita pepo (Zucchini)	cmacpeB353
CmaCh16G005060	MELO3C016218.2	Melon (DHL92) v3.6.1	cmamedB356
CmaCh16G005060	CsaV3_4G007130	Cucumber (Chinese Long) v3	cmacucB0393
CmaCh16G005060	Cla97C07G137850	Watermelon (97103) v2	cmawmbB350
CmaCh16G005060	Bhi01G002358	Wax gourd	cmawgoB0437
CmaCh16G005060	CsGy4G006850	Cucumber (Gy14) v2	cgybcmaB498
CmaCh16G005060	Carg11422	Silver-seed gourd	carcmaB0924
CmaCh16G005060	Carg13145	Silver-seed gourd	carcmaB0052

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh16G005060	CmaCh04G006000	Cucurbita maxima (Rimu)	cmacmaB353

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh16G005060	Melon (DHL92) v3.5.1	cmameB301
CmaCh16G005060	Melon (DHL92) v3.6.1	cmamedB350