CmoCh04G006420 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G006420
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Embryo defective 3006 protein, putative
Location	Cmo_Chr04 : 3174287 .. 3178770 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGTCGTTGAAGCCGTGACTCGCCGGCACTGACCGGAGTCAACTCATCAACTCGCTCACTTGCTGCCGCTCTCTAATTTCTTTTTGATGTTGTTACTTGCGCCATTTCCGCAGAGTTATATGTTGGGGTGGAATTTAGCGAGGTAGGGTTGGGGATTGAAGTGTATAAACGTTTTGAAAATGGAGAAGAAGCACGAGATTAGTACTCCGCTTAACTCCAGCCTGATTGATCTGAAAAATTCGTTCAAGCTCGCCGTTCGTTCTCTCCTGACTTCCTGTTCCAGGGAGGTAAGCACGAAAGTTGCTATAATGTGTATAATGTTCTATACTTTAGTAACCTTTTGTTCATATTTGTTTCTGGAAATGGTGTGGAATTGATGCTTTGGAATAAAAATTTCCTTATCAAGTGGCAATTTGGTTATGAGAGATATCTATAGGTTACTTTTCTTTTGAAAGAGACAGTAAATTTTGTATAGTTGTGCTTTTTTGTTTCGTAAAGGAGTTTCGGGAATGCCTTTCGGGATTTACGACCGTGGAGCAAGAAAATCTTCATCGTCTATTCGTTCAGGTACTATTGTGCTGCTCTTTTATGTCTTCCCCCGTCCTCACAGGAAAGATGTGGTGAAAGAAAATTAACATCCTATGTGTTAGACGAACACGACTCTCCACAATAGTATGATATTGTCCACTTTGAGCATAAGCTCTCATGGTTTTGCTTTGGGCTTCCCCAAAAGGCCTCACACCAATGGAGTTAGTATTCCTCACTTATAAACCCATGATCACACCCTAAATTAGTCGATGTGGGACTTCCATCATCCAACACTATGGACACAGATGCTATAATTTAAATTGGAGATCTTGTGTTTCTTTAAATATGATTCTAGGACGTTTTCTTGCGTGGATCATTCCTAGTTTTTCTGAATGTGCAAATCATGTGTTGTCTTCATGGTTAGCAGCATGTTATTTGCTTTACATTTTAAGAATTTACATATATTCTTATTGGTTTTAGTCTCTTTGGACATTGGAATAATGCATTTTGGTGTTCATCAAACTTTCAGGTTATAACTTCTTTGCACGGAAACATAGAGGTATATTTCCATTCAAGGTTTTGCTTCGGAGTCCATTGTGATGATTCCATTTCGGGATTTCCTGTTGTGTAATGTGATTATGTTATTTCTTCTTTTTCTCAACGTTAAGACCCTTAGAACATGTATGAGAGTGATTTTGAAATTGAATTACATGCCTTTAATCATTCAAGATCAACTTAGGGTTTAATTTTACAATTTTAGATGTCATTTTAAATTCATAAAAATTGTTTTTGAATAATTAAAATCATGTTTGGGAGTGATTTGGAATACGACTGAAGCGATTTTAACCATTTCAAAATCGCTCCCAAACATCTTTAATCGCATAATGTGCTTATTCTATGCTTAGGCATACTGCTGTTCCAATTGGATGTTCTCTTTAGTTATAATCATGTCACAGAATTATCACAACCCTTTATATCCATTGGATTTTCTTCTCTAATTATATTATACAAATTTTTAGCATTGAAGTTCTCAATTCTGCGCTGCAACGAGACACATGATTTAGAATAGAAAGAATATACTTATATATTGTTAATAGAAGATAGCAAGCCATGATAACACAAATTTCGATTGCTTCTGTCTCTAATAGGATAGGAAATGGAAAAAAGGAAAGTTTCTCAGAAACACGCAATTATTGTCTATCAGTAGAATGCAAATTGCCTTCGTCTTTTGCAAAAGGTAACCCATGAAATCACATGGACCTAGGTGTTTGCCATAGTCTAGTGCGGTTTTCCTCGTCCATTGCTGTTGGCTATTCACCTTACCCTGTCCTGAAATAAATCCTACAATAGGCTTCTCTTCTTTTACATTTATATGTGGTTATCGACAACATTTCATTTTAATTCTCTTTTTACATATTGCACTTCTGTTCAATAACACTGCCATTTCTGAAACATACAGGACGAGTTTGAGTCATTATGTATTGAAACCCAGGTAATTCTCCTGTCTATTAACTTGTTTTGGTTATTTACGATTAGCTCTTGCTTGCAAGGAACTTCTATGTGTCAGATTTGTTGGGGGGCTGTTGGGTTAAGACCTTTATGACATAATATTAATTTGTAGTTGATTTTTTCGTTCTGATCCACTTCAATGACCTTCTGTCTCCTATTCACTTTTTCCCTTCATGCGTGTATATATATATATATATAGTAAGGCATGGGAGTGATTCCGTGGACAAGTTCAATAGGATTACAGTGAGGGGGCCTTCATTGAAATTATCGATGTATTAGTTTTAAAAAACTCAAACCAGTTGCACAGTCTTGAATGTGTCAGATGCCTTTGTCCAAATAGCTGATGGTGGGTTTCAATACAAGATAAAAAACATGAATGATGGGTAAGAATTGGCGAAAATCTGTGAGATTGATCGTGATGGTTCACATGATAATAGGATTACAGGAAAAGTAATCGACATTCTGTATTGTTTCATTTCTTTTATGATAATTTTTCTTCTCAATTTCTAAATTCGCGTCACTTGTTCTTTGTCGTGTGTAATTGTAATTCGTTGGGGTTTGTTTGAAGTGATTATGCATTGCTAGTCATTTGTGTTATGTCAGGTGATTTTTCCTCTCCCATTGTGTGACTATTTGCCTCATTGTAATAGTTTTGATTTATGCAGGTAGGACGTATACTTGATAATGTTGAACAACTTTTGGAAGAACAAGATCTAGATCCATTGTATTCCAAGAAGTAGGTATCTTCTGCTGGGAGGTTACTTTCTCAATTAGTGGTCCAAATAAGTTGGGTTCTCTGATAGTTAAATCAATGATTTGATGTATAATTATATATAATTTTTGGATGAAAATTTGAAATGTGATTGGAAGTAATAACAACTCATGGTGGTTTATGCAATTTTCCCTTGTTTTTCGTTACGCAAAGGCATGGGAAGTGATCTATTAAGGTCGGGCTTCCTTGGGCGGCCTTTACAGATTGATTTCTCAGCTGGAGTTAACAAATAACAATATCTAATGCAGGACTAATATAATGGATATTCCTAATTATCTGTCCATGACAAAGAAGAATGAGATCCAACACTTGAAGGACATGCTGAAAACGGTATGCAACTCTTGTAACTGTAGCGAACTTCTCCATCTAAAAACAAACCAGCTTAACTGACATTGTTACTCATGTTTTATAATTATTATTTATTTATTTATTTATTTTTGTGGGTGAGAGGGAGGGGGAGGGGGTCATTCTTAATTGATTCGAGTATAATGGAAGAATTAGGCCTTTCTTCAATGGTAAATCTTAGCATATCACCGCATTTCCCTTTAGAAGAACTGAATTCTTAAAGTCACAACAATACTGGTAGTTTTGTATCCAATGGATCTTTTTTCTGTGATTGAAAATTGAAACAAATGAGTATGCTCTGATCCATCTGTAAGCACGCATCTTAGCTTTTAGGTAAAAAAGGCTCAATAATGCATTTGCTTTTGTTTGCTTGTATTTCTTGGGCGTGTCTCCCTGTGGTACTCTTTCTACTTTGTATTTTATGCATCTTCTTGTACCGTCCTTTCCACTTTAGTTCCCAAAAACAATCTGTGCTGTCTTTTCTTTTATGGTCCTTGCCAGCTGCCAATTAATGATGTGTGGCTTCTCAAAGAATCATTGCAGATACTATCAATCAATTCCTTCCCTAGATTTTTATGGTATACGTGGCAATTTCTTGACAAATTAAGTTTACAAGTTTTCTTATGATTGAAACTTTTTCTAGTCTGAGGAACAGAACCGGCATATTCAAGCCCGTATCGATGTCCTTAAGAAAGGAGTGGAAGATGCCTCGGGCATGGCAGATGCTGTTGAGAAGGTGCAACTTTTATTTGCTTTCCAATGACCCAATTGGTATTTTTTAAGACAGTTTAATCTTAAAAAATGTGTTCATCAATGGCCAAGTCTGAAAATAGTGGTTGATTTCTTATGAAAATTCCAAGAATTTAAACCATCTAGAAGAGAGAATAAAATTCAAGACCTAGTTTCTAAGCCCTATATCTAATCCGCAAATGCTCACAGCTAAGAATCAGAGGCAGAGCTTCTGCAACTGATGGTGATAACGGGACCTGCGATACATAACTCGCTGCTGCCTGTTGCCATCCTATTTGATTTCGTCCTGTTAAATGCATCTGGGATTGACGTTGAATAATGAGGTCAGTATGTAATTCAGTAGATTTCTTTGTGTAAATTTCTTCAGCTTAGCTCAAGCTTAATATGTTTTATGTTGTGGATCATGTGTTCTTCTGTCAATTCAACCGCTATATGGCTTTTGTTTTTCCTCTTCCACTCTCCGTGAAATCTCTATTTGCCTTTTTTCTTTAGCTTAGTCCAATTTTATTTAGGTATATATGATCAGTCAGAATATTTATGGGCAACATTTCACAGAAATTTCTTGGTGATGCAAATATTC

mRNA sequence

TTGTCGTTGAAGCCGTGACTCGCCGGCACTGACCGGAGTCAACTCATCAACTCGCTCACTTGCTGCCGCTCTCTAATTTCTTTTTGATGTTGTTACTTGCGCCATTTCCGCAGAGTTATATGTTGGGGTGGAATTTAGCGAGGTAGGGTTGGGGATTGAAGTGTATAAACGTTTTGAAAATGGAGAAGAAGCACGAGATTAGTACTCCGCTTAACTCCAGCCTGATTGATCTGAAAAATTCGTTCAAGCTCGCCGTTCGTTCTCTCCTGACTTCCTGTTCCAGGGAGGAGTTTCGGGAATGCCTTTCGGGATTTACGACCGTGGAGCAAGAAAATCTTCATCGTCTATTCGTTCAGGTTATAACTTCTTTGCACGGAAACATAGAGAATGCAAATTGCCTTCGTCTTTTGCAAAAGGACGAGTTTGAGTCATTATGTATTGAAACCCAGGTAGGACGTATACTTGATAATGTTGAACAACTTTTGGAAGAACAAGATCTAGATCCATTGTATTCCAAGAAGACTAATATAATGGATATTCCTAATTATCTGTCCATGACAAAGAAGAATGAGATCCAACACTTGAAGGACATGCTGAAAACGTCTGAGGAACAGAACCGGCATATTCAAGCCCGTATCGATGTCCTTAAGAAAGGAGTGGAAGATGCCTCGGGCATGGCAGATGCTGTTGAGAAGCTAAGAATCAGAGGCAGAGCTTCTGCAACTGATGGTGATAACGGGACCTGCGATACATAACTCGCTGCTGCCTGTTGCCATCCTATTTGATTTCGTCCTGTTAAATGCATCTGGGATTGACGTTGAATAATGAGGTCAGTATGTAATTCAGTAGATTTCTTTGTGTAAATTTCTTCAGCTTAGCTCAAGCTTAATATGTTTTATGTTGTGGATCATGTGTTCTTCTGTCAATTCAACCGCTATATGGCTTTTGTTTTTCCTCTTCCACTCTCCGTGAAATCTCTATTTGCCTTTTTTCTTTAGCTTAGTCCAATTTTATTTAGGTATATATGATCAGTCAGAATATTTATGGGCAACATTTCACAGAAATTTCTTGGTGATGCAAATATTC

Coding sequence (CDS)

ATGGAGAAGAAGCACGAGATTAGTACTCCGCTTAACTCCAGCCTGATTGATCTGAAAAATTCGTTCAAGCTCGCCGTTCGTTCTCTCCTGACTTCCTGTTCCAGGGAGGAGTTTCGGGAATGCCTTTCGGGATTTACGACCGTGGAGCAAGAAAATCTTCATCGTCTATTCGTTCAGGTTATAACTTCTTTGCACGGAAACATAGAGAATGCAAATTGCCTTCGTCTTTTGCAAAAGGACGAGTTTGAGTCATTATGTATTGAAACCCAGGTAGGACGTATACTTGATAATGTTGAACAACTTTTGGAAGAACAAGATCTAGATCCATTGTATTCCAAGAAGACTAATATAATGGATATTCCTAATTATCTGTCCATGACAAAGAAGAATGAGATCCAACACTTGAAGGACATGCTGAAAACGTCTGAGGAACAGAACCGGCATATTCAAGCCCGTATCGATGTCCTTAAGAAAGGAGTGGAAGATGCCTCGGGCATGGCAGATGCTGTTGAGAAGCTAAGAATCAGAGGCAGAGCTTCTGCAACTGATGGTGATAACGGGACCTGCGATACATAA

Homology

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BLAST of CmoCh04G006420 vs. TrEMBL
Match: A0A0A0KV94_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G056590 PE=4 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 4.4e-62
Identity = 130/174 (74.71%), Postives = 145/174 (83.33%), Query Frame = 1


Query: 1   MEKKHEISTPLNSSLIDLKNSFKLAVRSLLTSCSREEFRECLSGFTTVEQENLHRLFVQV 60
           M +KHE+  P++S  IDLK SFKLAVR LLTSCSREEFREC S FTT EQ+ LHRLF+QV
Sbjct: 1   MGEKHELDAPVSSRQIDLKKSFKLAVRPLLTSCSREEFRECFSRFTTAEQDYLHRLFIQV 60

Query: 61  ITSLHGNIENANCLRLLQKDEFESLCIETQVGRILDNVEQLLEEQDLDPLYSKKTNIMDI 120
           ITSLHGNIE          DEFESLC+ETQVG + DNVEQLLEEQDLDPLYSKKTNI++I
Sbjct: 61  ITSLHGNIE----------DEFESLCVETQVGLVFDNVEQLLEEQDLDPLYSKKTNIVEI 120

Query: 121 PNYLSMTKKNEIQHLKDMLKTSEEQNRHIQARIDVLKKGVEDASGMADAVEKLR 175
            N+LSMTKK EIQHLKDMLKT+EEQN  IQ RID L+KGV+DASGMADAV+KLR
Sbjct: 121 YNFLSMTKKEEIQHLKDMLKTAEEQNWVIQGRIDDLRKGVQDASGMADAVKKLR 164

[Close]

BLAST of CmoCh04G006420 vs. TrEMBL
Match: V4T3P8_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012881mg PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 7.4e-41
Identity = 96/166 (57.83%), Postives = 121/166 (72.89%), Query Frame = 1


Query: 11  LNSSLIDLKNSFKLAVRSLLTSCSREEFRECLSGFTTVEQENLHRLFVQVITSLHGNIEN 70
           + S   DL  SFKLA+RSLLT+CS+EEF +    F++ EQ +LHRLFVQVITSLH NIEN
Sbjct: 9   IGSRQSDLNKSFKLAIRSLLTTCSKEEFGKAFDRFSSSEQNSLHRLFVQVITSLHENIEN 68

Query: 71  ANCLRLLQKDEFESLCIETQVGRILDNVEQLLEEQDLDPLYSKKTNIMDIPNYLSMTKKN 130
                     EFESLC+ETQVG  LD VEQ +EEQ LDPL+S+KTN+MD+   L+  KKN
Sbjct: 69  ----------EFESLCLETQVGAALDTVEQFMEEQSLDPLFSEKTNVMDVVCDLTTAKKN 128

Query: 131 EIQHLKDMLKTSEEQNRHIQARIDVLKKGVEDASGMADAVEKLRIR 177
           EI +L  ML+  EEQNR  +AR+++LKKG +D SGM + VEKL++R
Sbjct: 129 EICYLTCMLERVEEQNRLRKARLELLKKGRQDFSGMTEVVEKLQLR 164

[Close]

BLAST of CmoCh04G006420 vs. TrEMBL
Match: V4S9I0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012881mg PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 2.1e-40
Identity = 96/164 (58.54%), Postives = 119/164 (72.56%), Query Frame = 1


Query: 11  LNSSLIDLKNSFKLAVRSLLTSCSREEFRECLSGFTTVEQENLHRLFVQVITSLHGNIEN 70
           + S   DL  SFKLA+RSLLT+CS+EEF +    F++ EQ +LHRLFVQVITSLH NIEN
Sbjct: 9   IGSRQSDLNKSFKLAIRSLLTTCSKEEFGKAFDRFSSSEQNSLHRLFVQVITSLHENIEN 68

Query: 71  ANCLRLLQKDEFESLCIETQVGRILDNVEQLLEEQDLDPLYSKKTNIMDIPNYLSMTKKN 130
                     EFESLC+ETQVG  LD VEQ +EEQ LDPL+S+KTN+MD+   L+  KKN
Sbjct: 69  ----------EFESLCLETQVGAALDTVEQFMEEQSLDPLFSEKTNVMDVVCDLTTAKKN 128

Query: 131 EIQHLKDMLKTSEEQNRHIQARIDVLKKGVEDASGMADAVEKLR 175
           EI +L  ML+  EEQNR  +AR+++LKKG +D SGM + VEKLR
Sbjct: 129 EICYLTCMLERVEEQNRLRKARLELLKKGRQDFSGMTEVVEKLR 162

[Close]

BLAST of CmoCh04G006420 vs. TrEMBL
Match: B9N0P7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s24350g PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 6.9e-39
Identity = 91/162 (56.17%), Postives = 119/162 (73.46%), Query Frame = 1


Query: 17  DLKNSFKLAVRSLLTSCSREEFRECLSGFTTVEQENLHRLFVQVITSLHGNIENANCLRL 76
           DL  SFKLA+RSLLTSCS++E  +  S F+  EQE+LHRLF+QVITSLH  +E       
Sbjct: 29  DLNRSFKLAIRSLLTSCSKQELAKAFSKFSNAEQESLHRLFIQVITSLHKMVE------- 88

Query: 77  LQKDEFESLCIETQVGRILDNVEQLLEEQDLDPLYSKKTNIMDIPNYLSMTKKNEIQHLK 136
              DEFESLC+ETQVG  L+ VEQL+EEQ+LDPL+S+K+NIMD    LSM KKNEI +L 
Sbjct: 89  ---DEFESLCLETQVGTALETVEQLVEEQNLDPLFSEKSNIMDAAKSLSMEKKNEIHYLM 148

Query: 137 DMLKTSEEQNRHIQARIDVLKKGVEDASGMADAVEKLRIRGR 179
            ML+ +EEQNR I+ R+++LK+ + D SG++  +EK+ I  R
Sbjct: 149 GMLEKAEEQNRRIRDRVELLKQKMPDDSGISVVMEKVWISFR 180

[Close]

BLAST of CmoCh04G006420 vs. TrEMBL
Match: A0A067JYA6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23978 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 2.6e-38
Identity = 99/182 (54.40%), Postives = 125/182 (68.68%), Query Frame = 1


Query: 10  PLNSSLIDLKNSFKLAVRSLLTSCSREEFRECLSGFTTVEQENLHRLFVQVITSLHGNIE 69
           P++S   D   SFKLA+RSLLTSC +EEF +  S F++ EQENLH LF+QVITSLH  IE
Sbjct: 4   PVSSRHSDFSQSFKLAIRSLLTSCPKEEFVKAFSNFSSKEQENLHYLFIQVITSLHKMIE 63

Query: 70  NANCLRLLQKDEFESLCIETQVGRILDNVEQLLEEQDLDPLYSKKTNIMDIPNYLSMTKK 129
                     DEFESLC ETQV   LD V+QL+EEQ L+PL+SKKTNIMD+   LS+ K+
Sbjct: 64  ----------DEFESLCHETQVRTTLDTVDQLVEEQSLNPLFSKKTNIMDVARELSIAKE 123

Query: 130 NEIQHLKDMLKTSEEQNRHIQARIDVLKKGVEDASGMADAVEKLRIRGRASATDGDNGTC 189
           NEI+ L D L+ +E+QNR ++ RI++LKKG ++ SG  D VEKLR  G  +     NG  
Sbjct: 124 NEIRFLTDTLEKAEKQNRLLRDRIELLKKGRQNVSGAID-VEKLR-SGVLNCWKSSNGIL 173

Query: 190 DT 192
           DT
Sbjct: 184 DT 173

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BLAST of CmoCh04G006420 vs. TAIR10
Match: AT4G19350.1 (AT4G19350.1 embryo defective 3006)

HSP 1 Score: 140.6 bits (353), Expect = 1.0e-33
Identity = 82/173 (47.40%), Postives = 111/173 (64.16%), Query Frame = 1


Query: 1   MEKKHEISTPLNSSLIDLKNSFKLAVRSLLTSCSREEFRECLSGFTTVEQENLHRLFVQV 60
           MEK    +    S    LK SFK  +R LLT+CS+++F +  S F+  EQE L +L+ +V
Sbjct: 1   MEKPGHETDIAGSRRTHLKKSFKSTLRHLLTACSKQDFVDIFSKFSGAEQELLFQLYTRV 60

Query: 61  ITSLHGNIENANCLRLLQKDEFESLCIETQVGRILDNVEQLLEEQDLDPLYSKKTNIMDI 120
           + +LH  IE          +EF+  C ETQVG ILD VE+L+EEQ LDPL+S KT++M I
Sbjct: 61  VVNLHQTIE----------EEFDEQCHETQVGPILDTVEELVEEQSLDPLFSDKTDVMAI 120

Query: 121 PNYLSMTKKNEIQHLKDMLKTSEEQNRHIQARIDVLKKGVEDASGMADAVEKL 174
              L+ +KKNEIQ L  +L+ +EEQNR  +ARI +LKK  +D SG AD +EKL
Sbjct: 121 AYDLTTSKKNEIQKLTVLLQRAEEQNRQKEARISMLKKQTQDLSGTADRIEKL 163

[Close]

BLAST of CmoCh04G006420 vs. NCBI nr
Match: gi|659101941|ref|XP_008451871.1| (PREDICTED: uncharacterized protein LOC103493030 [Cucumis melo])

HSP 1 Score: 263.5 bits (672), Expect = 2.9e-67
Identity = 142/190 (74.74%), Postives = 155/190 (81.58%), Query Frame = 1


Query: 1   MEKKHEISTPLNSSLIDLKNSFKLAVRSLLTSCSREEFRECLSGFTTVEQENLHRLFVQV 60
           M KKHEI TP+ S  IDLK SFKLAVRSLLTSCSREEFREC S FTT EQ+ LHRLF+QV
Sbjct: 1   MGKKHEIDTPVTSRQIDLKKSFKLAVRSLLTSCSREEFRECFSRFTTAEQDYLHRLFIQV 60

Query: 61  ITSLHGNIENANCLRLLQKDEFESLCIETQVGRILDNVEQLLEEQDLDPLYSKKTNIMDI 120
           ITSLHGNIE          DEFESLC+ETQVG +LDNVEQLLEEQDLDPLYSKKTNI++I
Sbjct: 61  ITSLHGNIE----------DEFESLCVETQVGLVLDNVEQLLEEQDLDPLYSKKTNIVEI 120

Query: 121 PNYLSMTKKNEIQHLKDMLKTSEEQNRHIQARIDVLKKGVEDASGMADAVEKLRIRGRAS 180
            N+LSM K  EIQHLKDMLKT+EEQNR IQ RIDVL+KGV+DASGMADAV+KLR   R+ 
Sbjct: 121 SNFLSMKKMEEIQHLKDMLKTAEEQNRVIQGRIDVLRKGVQDASGMADAVKKLRSECRSY 180

Query: 181 ATDGDNGTCD 191
            TDG N T D
Sbjct: 181 GTDGVNETLD 180

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BLAST of CmoCh04G006420 vs. NCBI nr
Match: gi|778691225|ref|XP_011653244.1| (PREDICTED: uncharacterized protein LOC101212745 [Cucumis sativus])

HSP 1 Score: 245.7 bits (626), Expect = 6.4e-62
Identity = 130/174 (74.71%), Postives = 145/174 (83.33%), Query Frame = 1


Query: 1   MEKKHEISTPLNSSLIDLKNSFKLAVRSLLTSCSREEFRECLSGFTTVEQENLHRLFVQV 60
           M +KHE+  P++S  IDLK SFKLAVR LLTSCSREEFREC S FTT EQ+ LHRLF+QV
Sbjct: 1   MGEKHELDAPVSSRQIDLKKSFKLAVRPLLTSCSREEFRECFSRFTTAEQDYLHRLFIQV 60

Query: 61  ITSLHGNIENANCLRLLQKDEFESLCIETQVGRILDNVEQLLEEQDLDPLYSKKTNIMDI 120
           ITSLHGNIE          DEFESLC+ETQVG + DNVEQLLEEQDLDPLYSKKTNI++I
Sbjct: 61  ITSLHGNIE----------DEFESLCVETQVGLVFDNVEQLLEEQDLDPLYSKKTNIVEI 120

Query: 121 PNYLSMTKKNEIQHLKDMLKTSEEQNRHIQARIDVLKKGVEDASGMADAVEKLR 175
            N+LSMTKK EIQHLKDMLKT+EEQN  IQ RID L+KGV+DASGMADAV+KLR
Sbjct: 121 YNFLSMTKKEEIQHLKDMLKTAEEQNWVIQGRIDDLRKGVQDASGMADAVKKLR 164

[Close]

BLAST of CmoCh04G006420 vs. NCBI nr
Match: gi|567876603|ref|XP_006430891.1| (hypothetical protein CICLE_v10012881mg [Citrus clementina])

HSP 1 Score: 175.3 bits (443), Expect = 1.1e-40
Identity = 96/166 (57.83%), Postives = 121/166 (72.89%), Query Frame = 1


Query: 11  LNSSLIDLKNSFKLAVRSLLTSCSREEFRECLSGFTTVEQENLHRLFVQVITSLHGNIEN 70
           + S   DL  SFKLA+RSLLT+CS+EEF +    F++ EQ +LHRLFVQVITSLH NIEN
Sbjct: 9   IGSRQSDLNKSFKLAIRSLLTTCSKEEFGKAFDRFSSSEQNSLHRLFVQVITSLHENIEN 68

Query: 71  ANCLRLLQKDEFESLCIETQVGRILDNVEQLLEEQDLDPLYSKKTNIMDIPNYLSMTKKN 130
                     EFESLC+ETQVG  LD VEQ +EEQ LDPL+S+KTN+MD+   L+  KKN
Sbjct: 69  ----------EFESLCLETQVGAALDTVEQFMEEQSLDPLFSEKTNVMDVVCDLTTAKKN 128

Query: 131 EIQHLKDMLKTSEEQNRHIQARIDVLKKGVEDASGMADAVEKLRIR 177
           EI +L  ML+  EEQNR  +AR+++LKKG +D SGM + VEKL++R
Sbjct: 129 EICYLTCMLERVEEQNRLRKARLELLKKGRQDFSGMTEVVEKLQLR 164

[Close]

BLAST of CmoCh04G006420 vs. NCBI nr
Match: gi|567876607|ref|XP_006430893.1| (hypothetical protein CICLE_v10012881mg [Citrus clementina])

HSP 1 Score: 173.7 bits (439), Expect = 3.1e-40
Identity = 96/164 (58.54%), Postives = 119/164 (72.56%), Query Frame = 1


Query: 11  LNSSLIDLKNSFKLAVRSLLTSCSREEFRECLSGFTTVEQENLHRLFVQVITSLHGNIEN 70
           + S   DL  SFKLA+RSLLT+CS+EEF +    F++ EQ +LHRLFVQVITSLH NIEN
Sbjct: 9   IGSRQSDLNKSFKLAIRSLLTTCSKEEFGKAFDRFSSSEQNSLHRLFVQVITSLHENIEN 68

Query: 71  ANCLRLLQKDEFESLCIETQVGRILDNVEQLLEEQDLDPLYSKKTNIMDIPNYLSMTKKN 130
                     EFESLC+ETQVG  LD VEQ +EEQ LDPL+S+KTN+MD+   L+  KKN
Sbjct: 69  ----------EFESLCLETQVGAALDTVEQFMEEQSLDPLFSEKTNVMDVVCDLTTAKKN 128

Query: 131 EIQHLKDMLKTSEEQNRHIQARIDVLKKGVEDASGMADAVEKLR 175
           EI +L  ML+  EEQNR  +AR+++LKKG +D SGM + VEKLR
Sbjct: 129 EICYLTCMLERVEEQNRLRKARLELLKKGRQDFSGMTEVVEKLR 162

[Close]

BLAST of CmoCh04G006420 vs. NCBI nr
Match: gi|568857589|ref|XP_006482347.1| (PREDICTED: uncharacterized protein LOC102612581 isoform X1 [Citrus sinensis])

HSP 1 Score: 173.7 bits (439), Expect = 3.1e-40
Identity = 94/166 (56.63%), Postives = 122/166 (73.49%), Query Frame = 1


Query: 11  LNSSLIDLKNSFKLAVRSLLTSCSREEFRECLSGFTTVEQENLHRLFVQVITSLHGNIEN 70
           + S   DL  SFKLA+RSLLT+CS+EEF +    F++ EQ +LHRLF QVITSLH NIEN
Sbjct: 9   IGSRQSDLNKSFKLAIRSLLTTCSKEEFGKAFDRFSSSEQNSLHRLFFQVITSLHENIEN 68

Query: 71  ANCLRLLQKDEFESLCIETQVGRILDNVEQLLEEQDLDPLYSKKTNIMDIPNYLSMTKKN 130
                     EFESLC+ETQVG  LD VEQ +EEQ+LDPL+S+KTN+MD+   L+  KKN
Sbjct: 69  ----------EFESLCLETQVGAALDTVEQFVEEQNLDPLFSEKTNVMDVVCDLTTAKKN 128

Query: 131 EIQHLKDMLKTSEEQNRHIQARIDVLKKGVEDASGMADAVEKLRIR 177
           EI +L  +L+  EEQNR ++AR+++LKKG +D SGM + VEKL++R
Sbjct: 129 EICYLTCILERVEEQNRLLKARLELLKKGRQDFSGMTEVVEKLQLR 164

The following BLAST results are available for this feature:

BLAST of CmoCh04G006420 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh04G006420 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KV94_CUCSA	4.4e-62	74.71	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G056590 PE=4 SV=1	[more]
V4T3P8_9ROSI	7.4e-41	57.83	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012881mg PE=4 SV=1	[more]
V4S9I0_9ROSI	2.1e-40	58.54	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012881mg PE=4 SV=1	[more]
B9N0P7_POPTR	6.9e-39	56.17	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s24350g PE=4 SV=1	[more]
A0A067JYA6_JATCU	2.6e-38	54.40	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23978 PE=4 SV=1	[more]

BLAST of CmoCh04G006420 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G19350.1	1.0e-33	47.40	embryo defective 3006	[more]

BLAST of CmoCh04G006420 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659101941\|ref\|XP_008451871.1\|	2.9e-67	74.74	PREDICTED: uncharacterized protein LOC103493030 [Cucumis melo]	[more]
gi\|778691225\|ref\|XP_011653244.1\|	6.4e-62	74.71	PREDICTED: uncharacterized protein LOC101212745 [Cucumis sativus]	[more]
gi\|567876603\|ref\|XP_006430891.1\|	1.1e-40	57.83	hypothetical protein CICLE_v10012881mg [Citrus clementina]	[more]
gi\|567876607\|ref\|XP_006430893.1\|	3.1e-40	58.54	hypothetical protein CICLE_v10012881mg [Citrus clementina]	[more]
gi\|568857589\|ref\|XP_006482347.1\|	3.1e-40	56.63	PREDICTED: uncharacterized protein LOC102612581 isoform X1 [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0000818	nuclear MIS12/MIND complex
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G006420.1	CmoCh04G006420.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 132..152 scor
None	No IPR available	PANTHER	PTHR15459	FAMILY NOT NAMED	coord: 13..173 score: 8.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G006420	CmaCh16G005060	Cucurbita maxima (Rimu)	cmacmoB340
CmoCh04G006420	CmaCh04G006000	Cucurbita maxima (Rimu)	cmacmoB728
CmoCh04G006420	Cla005458	Watermelon (97103) v1	cmowmB686
CmoCh04G006420	Csa4G056590	Cucumber (Chinese Long) v2	cmocuB699
CmoCh04G006420	MELO3C016218	Melon (DHL92) v3.5.1	cmomeB687
CmoCh04G006420	ClCG07G011120	Watermelon (Charleston Gray)	cmowcgB677
CmoCh04G006420	CSPI04G06920	Wild cucumber (PI 183967)	cmocpiB707
CmoCh04G006420	Lsi07G007750	Bottle gourd (USVL1VR-Ls)	cmolsiB689
CmoCh04G006420	Cp4.1LG14g02780	Cucurbita pepo (Zucchini)	cmocpeB670
CmoCh04G006420	Cp4.1LG01g01260	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G006420	MELO3C016218.2	Melon (DHL92) v3.6.1	cmomedB780
CmoCh04G006420	CsaV3_4G007130	Cucumber (Chinese Long) v3	cmocucB0827
CmoCh04G006420	Cla97C07G137850	Watermelon (97103) v2	cmowmbB756
CmoCh04G006420	Bhi01G002358	Wax gourd	cmowgoB0844
CmoCh04G006420	CsGy4G006850	Cucumber (Gy14) v2	cgybcmoB515
CmoCh04G006420	Carg11422	Silver-seed gourd	carcmoB0902
CmoCh04G006420	Carg13145	Silver-seed gourd	carcmoB0058

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh04G006420	CmoCh16G005540	Cucurbita moschata (Rifu)	cmocmoB288

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G006420	Melon (DHL92) v3.5.1	cmomeB697