CmaCh04G006000 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh04G006000
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Embryo defective 3006 protein, putative
Location	Cma_Chr04 : 3026353 .. 3030988 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTGACTTCAACCTCTTCGTCTATTCGTCTTTTTTTGTCGTTGAAGCCGTGACTTGCCGGCACTGACCGGAGTCATCAGCAACTCGCTCACTTGCTGCCGTTTTCTACTTTCTGTTTTATGTTGTTATTGCGCCATTACCGCAGAGTTATATGTTGGCGTAGAATTTAGCGAGGTAGGGTTGGGGATTGAAGTGTATAAACGTTTTGAAAATGGAGAAGAAGCACCAGATTGATTCTCCGCTTAACTCCAGCCTGATTGATCTGAAAAAGTCGTTCAAGCTCGCCGTTCGCTCTCTCCTGACTTCCTGTTCCAGGGAGGTAAGCACGAAAGTGCTGTAATGTGTATAGTGTTCTATATTGTAGTACCCTACTGTTCATATTTGTTTCTGGAAATGGTGTGGAATTGATGCTTTGCAATAAAAGTTTCCTTATCAAGTGGCAATTTGGGTATGAGAGATATCTATAGGTTACTTTTCTTTTGAAAGAGACAGTAAATTTTGTATAGTTGTGCTTTTTTGTTTCGTAAAGGAGTTTCGGGAATGCTTTTCGGGATTTACGACCGCGGAGCAAGAAAATCTTCACAGTCTATTCGTTCAGGTACTATTGTGCTGCTCTTTTATGTCTTCCCCCATCCTCACAGGAAAGATGTGGTGAAAGAAAATTAACATCCTATGGGCATAGATGCTATAATTTAAATTGGAGTTCTTGTGTTTCTTTTAATATTGTTAGTGAAAGAGGGATTGATTGAATGATTGAATGATTGAATGATTGATAAGTTTGACTAAATTTTGAAGAGCAAGAATGCTCTATATATATAGACAGAGAATACAAAGAGATATCTAGAAAATCTACTTAGAAATCGGTAAATCTGGTAACAAACTAGTAAACAAATTAAATCAAAACAAAATCTAATCAAATCAAGAGTAAATCAAATAAAAACAAATCGACTCATAACTATAAGAAGATTTAACCAAATACAGGAATCTAAACAAACACTAATCTTTAACAAATATGATTCTAGGAGTTTTCTTGCGTGGATCATTCTTAGTTTTGCTGAATGTGCAAATCATGCGTTGTCTTCATGGTTAGCAGCATGTTATTTGCTTTACATGTTAAGAATTTACATATATTCTTATTGCTTTTAGTCTCTTTGGACACTGGAATAATGCATTTTGATGTTCATCGAACTTTCAGGTTATAACTTCTTTGCATGGAAACATAGAGGTATATTTCCATTCAAGGTTTTGCTTCGGAGTCCATCCTGACGATTCCATTTCGGGATCTCTTGTTTAGCAATGTGATTATGTTGTTTCTTCTTTTTCTCAACGTTAAGGCACTTAGAACATGTATGAGAGTGATTTAGAAACTGCCAAATCACTTTTGTCATGTTCAAATTATATGCCTTTAATCATTCAAAATCATCCTTCAAGATCAACTTAGTGTTAATTTTACAATTTTAATTGTCATTTTAAATTCATAAAAATTGTTTTTGAATAATTAAAATCATGTTTGGGAGTGATTTTGAATACGACTAAAGCGATTTTAACCATTTCAAAATCGCTCCCGAACATCTTTAATGGCATAATATGCTTATTCTATGCTTAGGCTTACTGTTGATCCAATTGGATGTTTTCTTTAGTTATAATGATGTCACAGAATAATCGTAACTCTTTATAGTCTTTGGGTTTTCTTCTCTAATTATAATATACAAATTTTTAGCATGGAAGTTCTCTTCTGCGCTGCAACGAGACACATGATTTAGAATTGAAAGAATATACTTATATACTGTTAATAGAAGATAGCAAGCCATGATAACACAAAATTTGATTGCTTCTGTCTCTAACAGATAGGAAATGGAAAAAAGAAAAGTTCCTCAGAAACACGCAGTTATTGTCTATCAGTAGAATGCAAATTGCCTTCGCCTTTTGCAAAAAGTAACCCATGCAATCACCTGAACCTAGGTGTTCGCCATAGTCTAGTGCGGTTTTCCTCGTCCATTACTGTTGGCTATTCACCTAACCCTGTCTTGAAATAAATCCTACAATAGGCGTCTCTTCTTTTACATTTATGTGGTTATCGTCAACATTTCATTTTAATTCTCTTTTTACATATTGCACTTCTGTTCAATAACACTGCCATTTCTGAAACATACAGGACGAGTTTGAGTCATTATGTATTGAAACCCAGGTAATTCTCCTGTCTATTAACTTCTTTTGGTTATTTACGATTAGCTCTTGCTTGCAAGGAACTTCTATGTGTCAGATTTGTTGGGGGGCTGTTGGGTTAAGACCTTTATGACATAATATTAATTTGTAGTTGATTTTTGCGTTCTGATCCACTTCAATGACTTTCTGTCTCCTATTCACTTTTTCCCTTCCTGCGTGTATATATATAATAAGGCATGGGAGTGATTCCGTGGACAAGTTCAATAGGATTACAGTGAGGGTCTTCATTGAAATTATTGATGTATTAGTTTTAAAAAACTCAACCAGTTGCAGTCTTGAATGTGTCAGATGCCTTTGTCCAAATAGCTGATGGTGGGTTTCAATACAAGAAGATGAAAAACATGAATGATGGGTAAGAATTAGCGAAAATATGTGAGATTGATCGTGATGGTTCACATGATAATAGGATTACAGGAAAAGTAATCGACATTCTGTATTGTTTCATTTTTTTAATGATAATTTTTCTTCTCAATTTCTAACTTCGTGTCACTTGTTCTTTGTCGTGTGTAATTGTAATTCGTTGGGGTTTGTTTGAAGTGATTATGCATTGCTAATCAGTTGTGTTATGTCAGGTGATTTTTCCTCTTCCATTGTGTGACTACTTGCCTCATTGTAATAGTTTTGATTTATGCAGGTAGGACGTGTACTTGATAATGTTGAACAACTTTTGGAAGAACAAGATCTAGATCCATTGTACTCCAAGAAGTAGGTATCTTCTGCTGGGAGGTTACTTTCTCAGTTAGTGGTCCAAATAAGCTGGGTTCTCTGATAGTTAAATCAATGATTTGGATGAAAATTTGAAATGTGATTGGAAGTATAACAACTCATGGTGGTTTATGCAATTTTCCCTTGTTTTTCGTTACGCAAAGGCATGGGAAGTGAACTATTAAAGTCGGGCTTCCTTGGGCGGCCTTTACAGATTGAATTTCTCAGATGGAGTTAACACATAACAATATCTAATGCAGGACTAATATAATGGATATTGCTGATTATCTGTCCATCACAAAGAAGAATGAGATCCAACACTTGAAGGACATGCTGAAAACGGTATGCAACTCTTGTAACAGTAGCGAACTTCTCCATCTAAAAACAAACCAGCTTAACTGACACTGTTACTCTAGTTTTATAATTATTTATTTATTTGTTTATTTTTGTGGGTGAGAGGGAGGGGGAGGGGGTCATTCTTAATTGATTCAAGTATAATGGAAGATTTTAGGCCTTTCTTCATGGGTAAATCTTTAGCATATCACCGCATTTCCCTTTAGAAGAACTGAATTCTTAAAGTCACAACAATACTGGTAGTTTTGTATCCCATGGATCTTTTTTCTGTAATTGAAAATTGAATCAAATGAGTATGCTCTGTTCCATCTGTGAGCACGCATCTTAGCTTTTAGGTGAAAAAAAAAGGCTCAATAATGCATTTGCTTTTGTTTGCTTGTATTTCTTGGGCGTGTCTCCCTGTGGTACTCTTTCTACTTTGTATTTTATGCATCTTCCTGTACCGTCCTTTCCACTTTAGTTCCCAAAAACAATCTGTGCTGTCTTTTCTTTTATGGTCCTTGCCAGCTGCCAATTAATGATGTGTGGCTTCTCAAAGAATCATAGCAGATACTATCAATCAATTCCTTCACTCACTAGATTTTTATGTATACGTGGCAATTTCTTGACAAATTAGGTTTACAAGTTTTCTTATGATTGAAACTTTTTCTAGTCTGAGGAACAGAACCGGCATATTCAAGCCCGTATCGATGTCCTTAAGAAAGGAGTGGAAGATGCCTCGGGCATGGCTGATGCTGTTGAGAAGGTGCAACTTTTATTTGCTTTCCAATGACCCAGTGACCCAATTGGTATTTTTTAAGACAGTTTAATCTTAAAAAATGTGTTCATCAATGGCCAAGTCTGTCTAGAAGAGAAAATAAAATTCAAGACCTAGTTTCTAAAAATTCAAGACCTAGTTTCTAAGCCATATATCTAATCCGCAAATGCTCACAGCTAAGAATCAGATGCAGAGCTTCTGCAGCTGATGGTGATAACGGGACCTGCGACACATGACTCGCTGCTGCCTGTTGCCATTCTATTTGATTTCGTCCCGTTAAATGCATCTGGGATTGGCGTTGAATAATGAGGTCAGTATGTAATTCAGTAGATTTCTTTATGTGTAAATTTCTTCAGCTTAGCTCAAGCTTAATATGTTTTATGTTGTGGATCATGTGTTCTTCTGTCAATTCAACCGCTCTGTCTTTCTATAAGAAAAATCTGTATATGGCTTTTGTTTTTCCTCTTCCACTCTCTGAAATCTCTATATGGCTTTTTTCTTTAGCTTAGTCCAATTTTATTTAGGTATATATGATCAGTCAGAATATTTATGAGCAACATTTCACATAAATTTGTTGGTGATGCTAATATTCCAC

mRNA sequence

CTTGACTTCAACCTCTTCGTCTATTCGTCTTTTTTTGTCGTTGAAGCCGTGACTTGCCGGCACTGACCGGAGTCATCAGCAACTCGCTCACTTGCTGCCGTTTTCTACTTTCTGTTTTATGTTGTTATTGCGCCATTACCGCAGAGTTATATGTTGGCGTAGAATTTAGCGAGGTAGGGTTGGGGATTGAAGTGTATAAACGTTTTGAAAATGGAGAAGAAGCACCAGATTGATTCTCCGCTTAACTCCAGCCTGATTGATCTGAAAAAGTCGTTCAAGCTCGCCGTTCGCTCTCTCCTGACTTCCTGTTCCAGGGAGGAGTTTCGGGAATGCTTTTCGGGATTTACGACCGCGGAGCAAGAAAATCTTCACAGTCTATTCGTTCAGGTTATAACTTCTTTGCATGGAAACATAGAGGACGAGTTTGAGTCATTATGTATTGAAACCCAGGTAGGACGTGTACTTGATAATGTTGAACAACTTTTGGAAGAACAAGATCTAGATCCATTGTACTCCAAGAAGACTAATATAATGGATATTGCTGATTATCTGTCCATCACAAAGAAGAATGAGATCCAACACTTGAAGGACATGCTGAAAACGTCTGAGGAACAGAACCGGCATATTCAAGCCCGTATCGATGTCCTTAAGAAAGGAGTGGAAGATGCCTCGGGCATGGCTGATGCTGTTGAGAAGCTAAGAATCAGATGCAGAGCTTCTGCAGCTGATGGTGATAACGGGACCTGCGACACATGACTCGCTGCTGCCTGTTGCCATTCTATTTGATTTCGTCCCGTTAAATGCATCTGGGATTGGCGTTGAATAATGAGGTCAGTATGTAATTCAGTAGATTTCTTTATGTGTAAATTTCTTCAGCTTAGCTCAAGCTTAATATGTTTTATGTTGTGGATCATGTGTTCTTCTGTCAATTCAACCGCTCTGTCTTTCTATAAGAAAAATCTGTATATGGCTTTTGTTTTTCCTCTTCCACTCTCTGAAATCTCTATATGGCTTTTTTCTTTAGCTTAGTCCAATTTTATTTAGGTATATATGATCAGTCAGAATATTTATGAGCAACATTTCACATAAATTTGTTGGTGATGCTAATATTCCAC

Coding sequence (CDS)

ATGGAGAAGAAGCACCAGATTGATTCTCCGCTTAACTCCAGCCTGATTGATCTGAAAAAGTCGTTCAAGCTCGCCGTTCGCTCTCTCCTGACTTCCTGTTCCAGGGAGGAGTTTCGGGAATGCTTTTCGGGATTTACGACCGCGGAGCAAGAAAATCTTCACAGTCTATTCGTTCAGGTTATAACTTCTTTGCATGGAAACATAGAGGACGAGTTTGAGTCATTATGTATTGAAACCCAGGTAGGACGTGTACTTGATAATGTTGAACAACTTTTGGAAGAACAAGATCTAGATCCATTGTACTCCAAGAAGACTAATATAATGGATATTGCTGATTATCTGTCCATCACAAAGAAGAATGAGATCCAACACTTGAAGGACATGCTGAAAACGTCTGAGGAACAGAACCGGCATATTCAAGCCCGTATCGATGTCCTTAAGAAAGGAGTGGAAGATGCCTCGGGCATGGCTGATGCTGTTGAGAAGCTAAGAATCAGATGCAGAGCTTCTGCAGCTGATGGTGATAACGGGACCTGCGACACATGA

Protein sequence

MEKKHQIDSPLNSSLIDLKKSFKLAVRSLLTSCSREEFRECFSGFTTAEQENLHSLFVQVITSLHGNIEDEFESLCIETQVGRVLDNVEQLLEEQDLDPLYSKKTNIMDIADYLSITKKNEIQHLKDMLKTSEEQNRHIQARIDVLKKGVEDASGMADAVEKLRIRCRASAADGDNGTCDT

Homology

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BLAST of CmaCh04G006000 vs. TrEMBL
Match: A0A0A0KV94_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G056590 PE=4 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 4.1e-65
Identity = 131/164 (79.88%), Postives = 149/164 (90.85%), Query Frame = 1


Query: 1   MEKKHQIDSPLNSSLIDLKKSFKLAVRSLLTSCSREEFRECFSGFTTAEQENLHSLFVQV 60
           M +KH++D+P++S  IDLKKSFKLAVR LLTSCSREEFRECFS FTTAEQ+ LH LF+QV
Sbjct: 1   MGEKHELDAPVSSRQIDLKKSFKLAVRPLLTSCSREEFRECFSRFTTAEQDYLHRLFIQV 60

Query: 61  ITSLHGNIEDEFESLCIETQVGRVLDNVEQLLEEQDLDPLYSKKTNIMDIADYLSITKKN 120
           ITSLHGNIEDEFESLC+ETQVG V DNVEQLLEEQDLDPLYSKKTNI++I ++LS+TKK 
Sbjct: 61  ITSLHGNIEDEFESLCVETQVGLVFDNVEQLLEEQDLDPLYSKKTNIVEIYNFLSMTKKE 120

Query: 121 EIQHLKDMLKTSEEQNRHIQARIDVLKKGVEDASGMADAVEKLR 165
           EIQHLKDMLKT+EEQN  IQ RID L+KGV+DASGMADAV+KLR
Sbjct: 121 EIQHLKDMLKTAEEQNWVIQGRIDDLRKGVQDASGMADAVKKLR 164

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BLAST of CmaCh04G006000 vs. TrEMBL
Match: V4T3P8_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012881mg PE=4 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 6.7e-44
Identity = 96/156 (61.54%), Postives = 123/156 (78.85%), Query Frame = 1


Query: 11  LNSSLIDLKKSFKLAVRSLLTSCSREEFRECFSGFTTAEQENLHSLFVQVITSLHGNIED 70
           + S   DL KSFKLA+RSLLT+CS+EEF + F  F+++EQ +LH LFVQVITSLH NIE+
Sbjct: 9   IGSRQSDLNKSFKLAIRSLLTTCSKEEFGKAFDRFSSSEQNSLHRLFVQVITSLHENIEN 68

Query: 71  EFESLCIETQVGRVLDNVEQLLEEQDLDPLYSKKTNIMDIADYLSITKKNEIQHLKDMLK 130
           EFESLC+ETQVG  LD VEQ +EEQ LDPL+S+KTN+MD+   L+  KKNEI +L  ML+
Sbjct: 69  EFESLCLETQVGAALDTVEQFMEEQSLDPLFSEKTNVMDVVCDLTTAKKNEICYLTCMLE 128

Query: 131 TSEEQNRHIQARIDVLKKGVEDASGMADAVEKLRIR 167
             EEQNR  +AR+++LKKG +D SGM + VEKL++R
Sbjct: 129 RVEEQNRLRKARLELLKKGRQDFSGMTEVVEKLQLR 164

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BLAST of CmaCh04G006000 vs. TrEMBL
Match: V4S9I0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012881mg PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 1.5e-43
Identity = 96/154 (62.34%), Postives = 121/154 (78.57%), Query Frame = 1


Query: 11  LNSSLIDLKKSFKLAVRSLLTSCSREEFRECFSGFTTAEQENLHSLFVQVITSLHGNIED 70
           + S   DL KSFKLA+RSLLT+CS+EEF + F  F+++EQ +LH LFVQVITSLH NIE+
Sbjct: 9   IGSRQSDLNKSFKLAIRSLLTTCSKEEFGKAFDRFSSSEQNSLHRLFVQVITSLHENIEN 68

Query: 71  EFESLCIETQVGRVLDNVEQLLEEQDLDPLYSKKTNIMDIADYLSITKKNEIQHLKDMLK 130
           EFESLC+ETQVG  LD VEQ +EEQ LDPL+S+KTN+MD+   L+  KKNEI +L  ML+
Sbjct: 69  EFESLCLETQVGAALDTVEQFMEEQSLDPLFSEKTNVMDVVCDLTTAKKNEICYLTCMLE 128

Query: 131 TSEEQNRHIQARIDVLKKGVEDASGMADAVEKLR 165
             EEQNR  +AR+++LKKG +D SGM + VEKLR
Sbjct: 129 RVEEQNRLRKARLELLKKGRQDFSGMTEVVEKLR 162

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BLAST of CmaCh04G006000 vs. TrEMBL
Match: A0A067JYA6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23978 PE=4 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 4.4e-43
Identity = 104/178 (58.43%), Postives = 132/178 (74.16%), Query Frame = 1


Query: 7   IDSPLNSSLIDLKKSFKLAVRSLLTSCSREEFRECFSGFTTAEQENLHSLFVQVITSLHG 66
           +D P++S   D  +SFKLA+RSLLTSC +EEF + FS F++ EQENLH LF+QVITSLH 
Sbjct: 1   MDPPVSSRHSDFSQSFKLAIRSLLTSCPKEEFVKAFSNFSSKEQENLHYLFIQVITSLHK 60

Query: 67  NIEDEFESLCIETQVGRVLDNVEQLLEEQDLDPLYSKKTNIMDIADYLSITKKNEIQHLK 126
            IEDEFESLC ETQV   LD V+QL+EEQ L+PL+SKKTNIMD+A  LSI K+NEI+ L 
Sbjct: 61  MIEDEFESLCHETQVRTTLDTVDQLVEEQSLNPLFSKKTNIMDVARELSIAKENEIRFLT 120

Query: 127 DMLKTSEEQNRHIQARIDVLKKGVEDASGMADAVEKLR---IRCRASAADGDNGTCDT 182
           D L+ +E+QNR ++ RI++LKKG ++ SG  D VEKLR   + C  S+    NG  DT
Sbjct: 121 DTLEKAEKQNRLLRDRIELLKKGRQNVSGAID-VEKLRSGVLNCWKSS----NGILDT 173

[Close]

BLAST of CmaCh04G006000 vs. TrEMBL
Match: B9N0P7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s24350g PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 3.7e-42
Identity = 92/152 (60.53%), Postives = 122/152 (80.26%), Query Frame = 1


Query: 17  DLKKSFKLAVRSLLTSCSREEFRECFSGFTTAEQENLHSLFVQVITSLHGNIEDEFESLC 76
           DL +SFKLA+RSLLTSCS++E  + FS F+ AEQE+LH LF+QVITSLH  +EDEFESLC
Sbjct: 29  DLNRSFKLAIRSLLTSCSKQELAKAFSKFSNAEQESLHRLFIQVITSLHKMVEDEFESLC 88

Query: 77  IETQVGRVLDNVEQLLEEQDLDPLYSKKTNIMDIADYLSITKKNEIQHLKDMLKTSEEQN 136
           +ETQVG  L+ VEQL+EEQ+LDPL+S+K+NIMD A  LS+ KKNEI +L  ML+ +EEQN
Sbjct: 89  LETQVGTALETVEQLVEEQNLDPLFSEKSNIMDAAKSLSMEKKNEIHYLMGMLEKAEEQN 148

Query: 137 RHIQARIDVLKKGVEDASGMADAVEKLRIRCR 169
           R I+ R+++LK+ + D SG++  +EK+ I  R
Sbjct: 149 RRIRDRVELLKQKMPDDSGISVVMEKVWISFR 180

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BLAST of CmaCh04G006000 vs. TAIR10
Match: AT4G19350.1 (AT4G19350.1 embryo defective 3006)

HSP 1 Score: 154.5 bits (389), Expect = 6.4e-38
Identity = 85/163 (52.15%), Postives = 113/163 (69.33%), Query Frame = 1


Query: 1   MEKKHQIDSPLNSSLIDLKKSFKLAVRSLLTSCSREEFRECFSGFTTAEQENLHSLFVQV 60
           MEK         S    LKKSFK  +R LLT+CS+++F + FS F+ AEQE L  L+ +V
Sbjct: 1   MEKPGHETDIAGSRRTHLKKSFKSTLRHLLTACSKQDFVDIFSKFSGAEQELLFQLYTRV 60

Query: 61  ITSLHGNIEDEFESLCIETQVGRVLDNVEQLLEEQDLDPLYSKKTNIMDIADYLSITKKN 120
           + +LH  IE+EF+  C ETQVG +LD VE+L+EEQ LDPL+S KT++M IA  L+ +KKN
Sbjct: 61  VVNLHQTIEEEFDEQCHETQVGPILDTVEELVEEQSLDPLFSDKTDVMAIAYDLTTSKKN 120

Query: 121 EIQHLKDMLKTSEEQNRHIQARIDVLKKGVEDASGMADAVEKL 164
           EIQ L  +L+ +EEQNR  +ARI +LKK  +D SG AD +EKL
Sbjct: 121 EIQKLTVLLQRAEEQNRQKEARISMLKKQTQDLSGTADRIEKL 163

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BLAST of CmaCh04G006000 vs. NCBI nr
Match: gi|659101941|ref|XP_008451871.1| (PREDICTED: uncharacterized protein LOC103493030 [Cucumis melo])

HSP 1 Score: 275.0 bits (702), Expect = 9.3e-71
Identity = 142/180 (78.89%), Postives = 159/180 (88.33%), Query Frame = 1


Query: 1   MEKKHQIDSPLNSSLIDLKKSFKLAVRSLLTSCSREEFRECFSGFTTAEQENLHSLFVQV 60
           M KKH+ID+P+ S  IDLKKSFKLAVRSLLTSCSREEFRECFS FTTAEQ+ LH LF+QV
Sbjct: 1   MGKKHEIDTPVTSRQIDLKKSFKLAVRSLLTSCSREEFRECFSRFTTAEQDYLHRLFIQV 60

Query: 61  ITSLHGNIEDEFESLCIETQVGRVLDNVEQLLEEQDLDPLYSKKTNIMDIADYLSITKKN 120
           ITSLHGNIEDEFESLC+ETQVG VLDNVEQLLEEQDLDPLYSKKTNI++I+++LS+ K  
Sbjct: 61  ITSLHGNIEDEFESLCVETQVGLVLDNVEQLLEEQDLDPLYSKKTNIVEISNFLSMKKME 120

Query: 121 EIQHLKDMLKTSEEQNRHIQARIDVLKKGVEDASGMADAVEKLRIRCRASAADGDNGTCD 180
           EIQHLKDMLKT+EEQNR IQ RIDVL+KGV+DASGMADAV+KLR  CR+   DG N T D
Sbjct: 121 EIQHLKDMLKTAEEQNRVIQGRIDVLRKGVQDASGMADAVKKLRSECRSYGTDGVNETLD 180

[Close]

BLAST of CmaCh04G006000 vs. NCBI nr
Match: gi|778691225|ref|XP_011653244.1| (PREDICTED: uncharacterized protein LOC101212745 [Cucumis sativus])

HSP 1 Score: 255.8 bits (652), Expect = 5.8e-65
Identity = 131/164 (79.88%), Postives = 149/164 (90.85%), Query Frame = 1


Query: 1   MEKKHQIDSPLNSSLIDLKKSFKLAVRSLLTSCSREEFRECFSGFTTAEQENLHSLFVQV 60
           M +KH++D+P++S  IDLKKSFKLAVR LLTSCSREEFRECFS FTTAEQ+ LH LF+QV
Sbjct: 1   MGEKHELDAPVSSRQIDLKKSFKLAVRPLLTSCSREEFRECFSRFTTAEQDYLHRLFIQV 60

Query: 61  ITSLHGNIEDEFESLCIETQVGRVLDNVEQLLEEQDLDPLYSKKTNIMDIADYLSITKKN 120
           ITSLHGNIEDEFESLC+ETQVG V DNVEQLLEEQDLDPLYSKKTNI++I ++LS+TKK 
Sbjct: 61  ITSLHGNIEDEFESLCVETQVGLVFDNVEQLLEEQDLDPLYSKKTNIVEIYNFLSMTKKE 120

Query: 121 EIQHLKDMLKTSEEQNRHIQARIDVLKKGVEDASGMADAVEKLR 165
           EIQHLKDMLKT+EEQN  IQ RID L+KGV+DASGMADAV+KLR
Sbjct: 121 EIQHLKDMLKTAEEQNWVIQGRIDDLRKGVQDASGMADAVKKLR 164

[Close]

BLAST of CmaCh04G006000 vs. NCBI nr
Match: gi|567876603|ref|XP_006430891.1| (hypothetical protein CICLE_v10012881mg [Citrus clementina])

HSP 1 Score: 185.3 bits (469), Expect = 9.7e-44
Identity = 96/156 (61.54%), Postives = 123/156 (78.85%), Query Frame = 1


Query: 11  LNSSLIDLKKSFKLAVRSLLTSCSREEFRECFSGFTTAEQENLHSLFVQVITSLHGNIED 70
           + S   DL KSFKLA+RSLLT+CS+EEF + F  F+++EQ +LH LFVQVITSLH NIE+
Sbjct: 9   IGSRQSDLNKSFKLAIRSLLTTCSKEEFGKAFDRFSSSEQNSLHRLFVQVITSLHENIEN 68

Query: 71  EFESLCIETQVGRVLDNVEQLLEEQDLDPLYSKKTNIMDIADYLSITKKNEIQHLKDMLK 130
           EFESLC+ETQVG  LD VEQ +EEQ LDPL+S+KTN+MD+   L+  KKNEI +L  ML+
Sbjct: 69  EFESLCLETQVGAALDTVEQFMEEQSLDPLFSEKTNVMDVVCDLTTAKKNEICYLTCMLE 128

Query: 131 TSEEQNRHIQARIDVLKKGVEDASGMADAVEKLRIR 167
             EEQNR  +AR+++LKKG +D SGM + VEKL++R
Sbjct: 129 RVEEQNRLRKARLELLKKGRQDFSGMTEVVEKLQLR 164

[Close]

BLAST of CmaCh04G006000 vs. NCBI nr
Match: gi|645280225|ref|XP_008245092.1| (PREDICTED: uncharacterized protein LOC103343201 [Prunus mume])

HSP 1 Score: 184.1 bits (466), Expect = 2.2e-43
Identity = 91/149 (61.07%), Postives = 122/149 (81.88%), Query Frame = 1


Query: 16  IDLKKSFKLAVRSLLTSCSREEFRECFSGFTTAEQENLHSLFVQVITSLHGNIEDEFESL 75
           +++KKSFK  +RSLLT CS++EF + F  FTTAEQE LH +F+QVITSLHGN+EDEF+S+
Sbjct: 6   MEMKKSFKFCIRSLLTPCSKQEFCQAFPNFTTAEQERLHRMFIQVITSLHGNVEDEFQSV 65

Query: 76  CIETQVGRVLDNVEQLLEEQDLDPLYSKKTNIMDIADYLSITKKNEIQHLKDMLKTSEEQ 135
           C+ETQVG  LD VEQL+EEQ LD L+S KTN+MD+A  LS  KK++IQ+L  ML+T+EEQ
Sbjct: 66  CLETQVGTALDTVEQLVEEQALDRLFSDKTNVMDVAHDLSTMKKDQIQYLTKMLETAEEQ 125

Query: 136 NRHIQARIDVLKKGVEDASGMADAVEKLR 165
           N+ ++ ++++LKK   D SGMA+AVE+LR
Sbjct: 126 NQCLRDQVELLKKERLDVSGMANAVERLR 154

[Close]

BLAST of CmaCh04G006000 vs. NCBI nr
Match: gi|567876607|ref|XP_006430893.1| (hypothetical protein CICLE_v10012881mg [Citrus clementina])

HSP 1 Score: 184.1 bits (466), Expect = 2.2e-43
Identity = 96/154 (62.34%), Postives = 121/154 (78.57%), Query Frame = 1


Query: 11  LNSSLIDLKKSFKLAVRSLLTSCSREEFRECFSGFTTAEQENLHSLFVQVITSLHGNIED 70
           + S   DL KSFKLA+RSLLT+CS+EEF + F  F+++EQ +LH LFVQVITSLH NIE+
Sbjct: 9   IGSRQSDLNKSFKLAIRSLLTTCSKEEFGKAFDRFSSSEQNSLHRLFVQVITSLHENIEN 68

Query: 71  EFESLCIETQVGRVLDNVEQLLEEQDLDPLYSKKTNIMDIADYLSITKKNEIQHLKDMLK 130
           EFESLC+ETQVG  LD VEQ +EEQ LDPL+S+KTN+MD+   L+  KKNEI +L  ML+
Sbjct: 69  EFESLCLETQVGAALDTVEQFMEEQSLDPLFSEKTNVMDVVCDLTTAKKNEICYLTCMLE 128

Query: 131 TSEEQNRHIQARIDVLKKGVEDASGMADAVEKLR 165
             EEQNR  +AR+++LKKG +D SGM + VEKLR
Sbjct: 129 RVEEQNRLRKARLELLKKGRQDFSGMTEVVEKLR 162

The following BLAST results are available for this feature:

BLAST of CmaCh04G006000 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh04G006000 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KV94_CUCSA	4.1e-65	79.88	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G056590 PE=4 SV=1	[more]
V4T3P8_9ROSI	6.7e-44	61.54	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012881mg PE=4 SV=1	[more]
V4S9I0_9ROSI	1.5e-43	62.34	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012881mg PE=4 SV=1	[more]
A0A067JYA6_JATCU	4.4e-43	58.43	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23978 PE=4 SV=1	[more]
B9N0P7_POPTR	3.7e-42	60.53	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s24350g PE=4 SV=1	[more]

BLAST of CmaCh04G006000 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G19350.1	6.4e-38	52.15	embryo defective 3006	[more]

BLAST of CmaCh04G006000 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659101941\|ref\|XP_008451871.1\|	9.3e-71	78.89	PREDICTED: uncharacterized protein LOC103493030 [Cucumis melo]	[more]
gi\|778691225\|ref\|XP_011653244.1\|	5.8e-65	79.88	PREDICTED: uncharacterized protein LOC101212745 [Cucumis sativus]	[more]
gi\|567876603\|ref\|XP_006430891.1\|	9.7e-44	61.54	hypothetical protein CICLE_v10012881mg [Citrus clementina]	[more]
gi\|645280225\|ref\|XP_008245092.1\|	2.2e-43	61.07	PREDICTED: uncharacterized protein LOC103343201 [Prunus mume]	[more]
gi\|567876607\|ref\|XP_006430893.1\|	2.2e-43	62.34	hypothetical protein CICLE_v10012881mg [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007128	PMF1/Nnf1

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0000818	nuclear MIS12/MIND complex
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G006000.1	CmaCh04G006000.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007128	Polyamine-modulated factor 1/Kinetochore protein NNF1	PFAM	PF03980	Nnf1	coord: 52..144 score: 1.
None	No IPR available	unknown	Coil	Coil	coord: 122..142 scor
None	No IPR available	PANTHER	PTHR15459	FAMILY NOT NAMED	coord: 13..163 score: 4.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh04G006000	Cla005458	Watermelon (97103) v1	cmawmB692
CmaCh04G006000	Csa4G056590	Cucumber (Chinese Long) v2	cmacuB708
CmaCh04G006000	MELO3C016218	Melon (DHL92) v3.5.1	cmameB695
CmaCh04G006000	ClCG07G011120	Watermelon (Charleston Gray)	cmawcgB675
CmaCh04G006000	CSPI04G06920	Wild cucumber (PI 183967)	cmacpiB714
CmaCh04G006000	CmoCh16G005540	Cucurbita moschata (Rifu)	cmacmoB703
CmaCh04G006000	CmoCh04G006420	Cucurbita moschata (Rifu)	cmacmoB728
CmaCh04G006000	Lsi07G007750	Bottle gourd (USVL1VR-Ls)	cmalsiB695
CmaCh04G006000	Cp4.1LG14g02780	Cucurbita pepo (Zucchini)	cmacpeB717
CmaCh04G006000	Cp4.1LG01g01260	Cucurbita pepo (Zucchini)	cmacpeB720
CmaCh04G006000	MELO3C016218.2	Melon (DHL92) v3.6.1	cmamedB783
CmaCh04G006000	CsaV3_4G007130	Cucumber (Chinese Long) v3	cmacucB0841
CmaCh04G006000	Cla97C07G137850	Watermelon (97103) v2	cmawmbB782
CmaCh04G006000	Bhi01G002358	Wax gourd	cmawgoB0847
CmaCh04G006000	CsGy4G006850	Cucumber (Gy14) v2	cgybcmaB541
CmaCh04G006000	Carg11422	Silver-seed gourd	carcmaB0927
CmaCh04G006000	Carg13145	Silver-seed gourd	carcmaB0055

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh04G006000	CmaCh16G005060	Cucurbita maxima (Rimu)	cmacmaB353

The following block(s) are covering this gene:

None