Carg13145 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg13145
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Embryo defective 3006, putative isoform 1
Location	Cucurbita_argyrosperma_scaffold_101 : 596158 .. 600312 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGAATTTAGCGAGGTAGGGTTGGGGATTGAAGTGTATAAACGTTTTGCAAATGGAGAAGAAGCACGAGATTAGTACTCCGCTTAACTCCAGCCTGATTGATCTGAAAAAGTCGTTCAAGCTCGCCGTTCGTTCTCTCCTGACTTCCTGTTCCAGGGAGGTAAGCACGAAAGTTGCTATAATGTGTATAATGTTCTATACTTCAGTAACCTTTTGTTCATATTTGTTTCTGGAAATGGTGTGGAATTGATGCTTTGGAATAAAAGTTTCCTTATCAAGTGGCAATTTGGTTATGAGAGATATCTATAGGTTACTTTTCTTTTGAAAGAGACAGTAAATTTTGTATAGTTGTGCTTTTTTGTTTCGTAAAGGAGTTTCGGGAATGCTTTTCGGGATTTACGACCGTGGAGCAAGAAAATCTTCATCGTCTATTCGTTCAGGTACTATTGTGCTGCTCTTTTATGTCTTCCCCCGTCCTCACAGGCAAGATGTGGTGAAAGAAAATTAACATCCTATGGACACAGATGCTATAATTTAAATTGGAGATCCTGTGTTTCTTTAAATATGATTCTAGGACGTTTTCTTGCGTGGATCATTCCTAGTTTTGCTGAATGTGCAAATCATGTGTTGTCTTCATGGTTAGCAGCATGTTATTTGCTTTACATGTTAAGAATTTACATATATTCTTATTGGTTTTAGTCTCTTTGGACAGTGGAATAATGCATTTTGGTGTTCATCAAACTTTCAGGTTATAACTTCTTTGCACGGAAACATAGAGGTATATTTCCATTCAAGGTTTTGCTTCGGAGTCCATTGTGATGATTCCATTTCGGGATTTCCTGTTGTGTAATGTGATTATGTTATTTCTTCTTTTTCTCAACGTTAAGACCCTTATAACATGTATGAGAGTGATTTTGAAATTGAATTACATGCCTTTAATCATTCAAGATCAACTTAGAGTTTAATTTTACAATTTTAGATGTCATTTTAAATTCATAAAAATTGTTTTTGAATAATTAAAATCATGTTTGGGAGTGATTTTGAATATGACTAAAGCGATTTTAACCATTTCAAAATCGCTCCCAAACATCTTTAATCGCATAATGTGCTTATTCTATGCTTAGGCATACTGCTCTTCCAATTGGATGTTCTTTTTAGTTATAATCATGTCACAGAATTATCACAACCCTTCATATCCATTGGATTTTCTTCTCTAATTATATTATACAAATTTTTAGCATTGAAGTTCTCAATTCTGCGCTGCAACGAGACACATGATTTAGAATAGAAAGAATATACTTATATATTGTTAATAGAAGATAGCAAGCCATGATAACACAAATTTCGATTGCTTCTGTCTCTAATAGATAGGAAATGGAAAAAAGGAAAGTTTCTCAGAAACACGCAATTATTGTCTATCAGTAGAATGCAAATTGCCTTCGTCTTTTGCAAAAGGTAACCCATGAAATCACATGGACCTAGGTGTTTGCCATAGTCTAGTGCGGTTTTCCTCGTCCATTGCTGTTGGCTATTCACCTTACCCTGTCTTGAAATAAATCCTACAATAGGCTTCTCTTCTTTTACATTTATATGTGGTTATCGACAACATTTCATTTTAATTCTCTTTTTACATATTGCACTTCTGTTCAATAACACTGCCATTTCTGAAACATACAGGACGAGTTTGAGTCATTATGTATTGAAACCCAGGTAATTCTCCTGTCTATTAACTTGTTTTGGTTATTTACGATTAGCTCTTGCTTGCAAGGAACTTCTATGTGTCAGATTTGTTGGGGGGCTGTTGGGTTAAGACCTTTATGACATAATATTAATTTGTAGTTGATTTTTTCGTTCTGATCCACTTCAATGACTTTCTGTCTCCTATTCACTTTTTCCCTTCATGCGTGTATATATATATATATGTATAGTAAGGCATGGGAGTGATTCCGTGGACAAGTTCAATAGGATTACAGTGAGGGGGCCTTCATTGAAATTATCGATGTATTAGTTTTAAAAAACTCAAACCAGTTGCACAGTCTTGAATGTGTCAGATGCCTTTGTCCAAATAGCTGATGGTGGGTTTCAATACAAGATAAAAAACATGAATGATGGGTAAGAATTAGCGAAAATATGTGAGATTGATCGTGACGGTTCACATGATAATAGGATTACAGGAAAAGTAATCGACATTCTGCATTGTTTCATTTCTTTAATGATAATTTTTCTTCTCAATTTCTAACTTCGTGTCACTTGTTCTTTGTCGTGTGTAATTGTAATTCGTTGGGGTTTGTTTGAAGTGATTATGCATTGCTAGTCATTTGTGTTATGTCAGGTGATTTTTCCTCTTCCATTGTGTGACTATTTGCCTCATTGTAATAGTTTTGATTTATGCAGGTAGGACGTATACTTGATAATGTTCAACAACTTTTGGAAGAACAAGATCTAGATCCATTGTATTCCAAGAAGTAGGTATCTTCTGCTGGGAGGTTACTTTCTCAATTAGTGGTTCAAATAAGTTGGGTTCTCTGATAGTTAAATCAATGATTTGATGTATAATTATATATAATTTTTGGATGAAAATTTGAAATGTGATTGGAAGTAATAACAACTCATGGTGGTTTATGCAATTTTCCCTTCTTGTTTTTCGTTATGCAAAGGCATGGGAAGTGATCTATTAAGGTCGGGCTTCCTTGGGCGGCCTTTACAGATTGATTTCTCAGCTCGAGTTAACAAATAACAATATCTAATGCAGGACTAATATAATGGATATTGCTAATTATCTGTCCATGACAAAGAAGAATGAGATCCAACACTTGAAGGACATGCTGAAAACGGTATGCAACTCTTGTAACTGTAGCGAACTTCTCCATCTAAAAAGAAACCAGCTTAACTGACATTGTTACTCATGTTTTATAATTAATTAATTATTTATTTATTTATTTTTGTGGGTGAGAGGGAGGGGGAGGGGGTCATTCTTAATTGGTTCGAGTATAATGGAAGAATTTGGCCTTTCTTCATTGGTAAATCTTAGCATATCACAGCATTTCCCTTTAGAAGAACTGAATTCTTGAAGTCACAACAATACTGGTAGTATTGTATCCAATGGATCTTTTTTCTGTGATTGAAAATTGAAACAAATGAGTATGCTCTGATCCATCTGTAAGCACGCATCTTAGCTTTTAGGTAAAAAAGGCTCAATAATGCATTTGCTTTTGTTTGCTTGTATTTCTTGGGCGTGTCTCCATGTGGTACTCTTTCTACTTTGTATTTTATGCATCTTCCTGTACCGTCCTTTCCACTTTAGTTCCCAAAAACAATCTGTGCTGTCTTTTCTTTTATGGTCCTTGCCAGCTGCCAATTAATCATGTGTGGCTTCTCAAAGAATCATTGCAGATACTATCAATCAATTCCTTCACTAGATTTTTATGGTATACGTGGCAATTTCTTGACAAATTAAGTTTACAAGTTTTCTTATGATTGAAACTTTTTCTAGTCTGAGGAACAGAACCGGCATATTCAAGCCCGTATCGATGTCCTTAAGAAAGGAGTGGAAGATGCCTCGGGCATGGCAGATGCTGTTGAGAAGGTGCAACTTTTATTTGCTTTCCAATGACCCAATTGGTATTTTTTAAGACAGTTTAATCTTAAAAAATGTGTTCATCAATGGCCAAGTCTGAAAATAGTGGTTGATTTCTTATGAAAATTCCAAGAATTTAAACCATCTAGAAGAGAATAAAATTCAAGACCTAGTTTCTAAGCCCTATATCTAATCCGCAAATGCTCACAGCTAAGAATCAGAGGCAGAGCTTCTGCAACTGATGGTGATAACGGGACCTGCGATACATAACTCGCTGCTGCCTGTTGCCATCCTATTTGATTTCGTCCTGTTAAATGCATCTGGGATTGGCGTTGAATAATGAGGTCAGTATGTAATTCAGTAGATTTCTTTATGTGTAAATTTCTTCAGCTTAGCTCAAGCTTAATATGTTTTATGTTGTGGATCATGTGTTCTTCTGTCAATTCAACCGCTATATGGCTTTTGTTTTTCCTCTTCCACTCTCTGTGAAATCTCCATATGCCTTTTTTCTTTAGCTTAGTCCAATTTTATTTAGGTATATATGATCAGTCAGAATATTTATGGGCAACATTTCACAGA

mRNA sequence

TGGAATTTAGCGAGGTAGGGTTGGGGATTGAAGTGTATAAACGTTTTGCAAATGGAGAAGAAGCACGAGATTAGTACTCCGCTTAACTCCAGCCTGATTGATCTGAAAAAGTCGTTCAAGCTCGCCGTTCGTTCTCTCCTGACTTCCTGTTCCAGGGAGGAGTTTCGGGAATGCTTTTCGGGATTTACGACCGTGGAGCAAGAAAATCTTCATCGTCTATTCGTTCAGGTTATAACTTCTTTGCACGGAAACATAGAGGACGAGTTTGAGTCATTATGTATTGAAACCCAGGTAGGACGTATACTTGATAATGTTCAACAACTTTTGGAAGAACAAGATCTAGATCCATTGTATTCCAAGAAGACTAATATAATGGATATTGCTAATTATCTGTCCATGACAAAGAAGAATGAGATCCAACACTTGAAGGACATGCTGAAAACGTCTGAGGAACAGAACCGGCATATTCAAGCCCGTATCGATGTCCTTAAGAAAGGAGTGGAAGATGCCTCGGGCATGGCAGATGCTGTTGAGAAGCTAAGAATCAGAGGCAGAGCTTCTGCAACTGATGGTGATAACGGGACCTGCGATACATAACTCGCTGCTGCCTGTTGCCATCCTATTTGATTTCGTCCTGTTAAATGCATCTGGGATTGGCGTTGAATAATGAGGTCAGTATGTAATTCAGTAGATTTCTTTATGTGTAAATTTCTTCAGCTTAGCTCAAGCTTAATATGTTTTATGTTGTGGATCATGTGTTCTTCTGTCAATTCAACCGCTATATGGCTTTTGTTTTTCCTCTTCCACTCTCTGTGAAATCTCCATATGCCTTTTTTCTTTAGCTTAGTCCAATTTTATTTAGGTATATATGATCAGTCAGAATATTTATGGGCAACATTTCACAGA

Coding sequence (CDS)

ATGGAGAAGAAGCACGAGATTAGTACTCCGCTTAACTCCAGCCTGATTGATCTGAAAAAGTCGTTCAAGCTCGCCGTTCGTTCTCTCCTGACTTCCTGTTCCAGGGAGGAGTTTCGGGAATGCTTTTCGGGATTTACGACCGTGGAGCAAGAAAATCTTCATCGTCTATTCGTTCAGGTTATAACTTCTTTGCACGGAAACATAGAGGACGAGTTTGAGTCATTATGTATTGAAACCCAGGTAGGACGTATACTTGATAATGTTCAACAACTTTTGGAAGAACAAGATCTAGATCCATTGTATTCCAAGAAGACTAATATAATGGATATTGCTAATTATCTGTCCATGACAAAGAAGAATGAGATCCAACACTTGAAGGACATGCTGAAAACGTCTGAGGAACAGAACCGGCATATTCAAGCCCGTATCGATGTCCTTAAGAAAGGAGTGGAAGATGCCTCGGGCATGGCAGATGCTGTTGAGAAGCTAAGAATCAGAGGCAGAGCTTCTGCAACTGATGGTGATAACGGGACCTGCGATACATAA

Protein sequence

MEKKHEISTPLNSSLIDLKKSFKLAVRSLLTSCSREEFRECFSGFTTVEQENLHRLFVQVITSLHGNIEDEFESLCIETQVGRILDNVQQLLEEQDLDPLYSKKTNIMDIANYLSMTKKNEIQHLKDMLKTSEEQNRHIQARIDVLKKGVEDASGMADAVEKLRIRGRASATDGDNGTCDT

Homology

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BLAST of Carg13145 vs. NCBI nr
Match: XP_022941729.1 (uncharacterized protein LOC111447007 [Cucurbita moschata])

HSP 1 Score: 342.0 bits (876), Expect = 1.2e-90
Identity = 177/181 (97.79%), Postives = 178/181 (98.34%), Query Frame = 0


Query: 1   MEKKHEISTPLNSSLIDLKKSFKLAVRSLLTSCSREEFRECFSGFTTVEQENLHRLFVQV 60
           MEKKHEISTPLNSSLIDLK SFKLAVRSLLTSCSREEFREC SGFTTVEQENLHRLFVQV
Sbjct: 1   MEKKHEISTPLNSSLIDLKNSFKLAVRSLLTSCSREEFRECLSGFTTVEQENLHRLFVQV 60

Query: 61  ITSLHGNIEDEFESLCIETQVGRILDNVQQLLEEQDLDPLYSKKTNIMDIANYLSMTKKN 120
           ITSLHGNIEDEFESLCIETQVGRILDNV+QLLEEQDLDPLYSKKTNIMDI NYLSMTKKN
Sbjct: 61  ITSLHGNIEDEFESLCIETQVGRILDNVEQLLEEQDLDPLYSKKTNIMDIPNYLSMTKKN 120

Query: 121 EIQHLKDMLKTSEEQNRHIQARIDVLKKGVEDASGMADAVEKLRIRGRASATDGDNGTCD 180
           EIQHLKDMLKTSEEQNRHIQARIDVLKKGVEDASGMADAVEKLRIRGRASATDGDNGTCD
Sbjct: 121 EIQHLKDMLKTSEEQNRHIQARIDVLKKGVEDASGMADAVEKLRIRGRASATDGDNGTCD 180

Query: 181 T 182
           T
Sbjct: 181 T 181

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BLAST of Carg13145 vs. NCBI nr
Match: XP_023527503.1 (uncharacterized protein LOC111790708 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 334.0 bits (855), Expect = 3.3e-88
Identity = 172/181 (95.03%), Postives = 176/181 (97.24%), Query Frame = 0


Query: 1   MEKKHEISTPLNSSLIDLKKSFKLAVRSLLTSCSREEFRECFSGFTTVEQENLHRLFVQV 60
           MEKKHEI TPL+SSLIDL KSFKLAVRSLLTSCSREEFRECFSGFTT EQENLHRLFVQV
Sbjct: 1   MEKKHEIGTPLSSSLIDLTKSFKLAVRSLLTSCSREEFRECFSGFTTAEQENLHRLFVQV 60

Query: 61  ITSLHGNIEDEFESLCIETQVGRILDNVQQLLEEQDLDPLYSKKTNIMDIANYLSMTKKN 120
           ITSLHGNIEDEFESLCIETQVGR+LDNV+QLLEEQDLDPLYSKKTNIMDIANYLSMT+KN
Sbjct: 61  ITSLHGNIEDEFESLCIETQVGRVLDNVEQLLEEQDLDPLYSKKTNIMDIANYLSMTRKN 120

Query: 121 EIQHLKDMLKTSEEQNRHIQARIDVLKKGVEDASGMADAVEKLRIRGRASATDGDNGTCD 180
           EIQHLKDMLKTSEEQNRHIQARIDVLKKGVEDASGMADAVEKLRIR RAS TDGDNGTCD
Sbjct: 121 EIQHLKDMLKTSEEQNRHIQARIDVLKKGVEDASGMADAVEKLRIRCRASPTDGDNGTCD 180

Query: 181 T 182
           T
Sbjct: 181 T 181

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BLAST of Carg13145 vs. NCBI nr
Match: XP_022982967.1 (uncharacterized protein LOC111481654 [Cucurbita maxima])

HSP 1 Score: 330.9 bits (847), Expect = 2.8e-87
Identity = 170/181 (93.92%), Postives = 176/181 (97.24%), Query Frame = 0


Query: 1   MEKKHEISTPLNSSLIDLKKSFKLAVRSLLTSCSREEFRECFSGFTTVEQENLHRLFVQV 60
           MEKKH+I +PLNSSLIDLKKSFKLAVRSLLTSCSREEFRECFSGFTT EQENLH LFVQV
Sbjct: 1   MEKKHQIDSPLNSSLIDLKKSFKLAVRSLLTSCSREEFRECFSGFTTAEQENLHSLFVQV 60

Query: 61  ITSLHGNIEDEFESLCIETQVGRILDNVQQLLEEQDLDPLYSKKTNIMDIANYLSMTKKN 120
           ITSLHGNIEDEFESLCIETQVGR+LDNV+QLLEEQDLDPLYSKKTNIMDIA+YLS+TKKN
Sbjct: 61  ITSLHGNIEDEFESLCIETQVGRVLDNVEQLLEEQDLDPLYSKKTNIMDIADYLSITKKN 120

Query: 121 EIQHLKDMLKTSEEQNRHIQARIDVLKKGVEDASGMADAVEKLRIRGRASATDGDNGTCD 180
           EIQHLKDMLKTSEEQNRHIQARIDVLKKGVEDASGMADAVEKLRIR RASA DGDNGTCD
Sbjct: 121 EIQHLKDMLKTSEEQNRHIQARIDVLKKGVEDASGMADAVEKLRIRCRASAADGDNGTCD 180

Query: 181 T 182
           T
Sbjct: 181 T 181

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BLAST of Carg13145 vs. NCBI nr
Match: XP_022931290.1 (uncharacterized protein LOC111437518 isoform X1 [Cucurbita moschata] >XP_023552810.1 uncharacterized protein LOC111810334 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 290.0 bits (741), Expect = 5.4e-75
Identity = 149/178 (83.71%), Postives = 163/178 (91.57%), Query Frame = 0


Query: 1   MEKKHEISTPLNSSLIDLKKSFKLAVRSLLTSCSREEFRECFSGFTTVEQENLHRLFVQV 60
           M+KKHEI TP++SS IDLKKSFKLAVRSLLTSCSREEFRECFS FTT EQE LHRLF+QV
Sbjct: 1   MDKKHEIGTPVSSSQIDLKKSFKLAVRSLLTSCSREEFRECFSRFTTAEQEYLHRLFIQV 60

Query: 61  ITSLHGNIEDEFESLCIETQVGRILDNVQQLLEEQDLDPLYSKKTNIMDIANYLSMTKKN 120
           ITSLHGNIEDEFESLC+ETQVG +LDNV+QLLEEQDLDPLYSKKTNIM+IANYLSMTKKN
Sbjct: 61  ITSLHGNIEDEFESLCVETQVGLVLDNVEQLLEEQDLDPLYSKKTNIMEIANYLSMTKKN 120

Query: 121 EIQHLKDMLKTSEEQNRHIQARIDVLKKGVEDASGMADAVEKLRIRGRASATDGDNGT 179
           EIQHLKDMLKT+EEQNRH+Q RID+L+KGV+DAS M DAVEKLR R RA A DG + T
Sbjct: 121 EIQHLKDMLKTAEEQNRHVQGRIDILRKGVQDASAMEDAVEKLRNRCRAYADDGVSRT 178

[Close]

BLAST of Carg13145 vs. NCBI nr
Match: XP_022136388.1 (uncharacterized protein LOC111008110 [Momordica charantia])

HSP 1 Score: 289.3 bits (739), Expect = 9.2e-75
Identity = 151/180 (83.89%), Postives = 162/180 (90.00%), Query Frame = 0


Query: 1   MEKKHEISTPLNSSLIDLKKSFKLAVRSLLTSCSREEFRECFSGFTTVEQENLHRLFVQV 60
           MEKKHE+STP +SS +DLKKSFKLAVRSLLTSCSREEFRECF  FT  EQE LHRLF+QV
Sbjct: 1   MEKKHEVSTPASSSHLDLKKSFKLAVRSLLTSCSREEFRECFLRFTNAEQEYLHRLFIQV 60

Query: 61  ITSLHGNIEDEFESLCIETQVGRILDNVQQLLEEQDLDPLYSKKTNIMDIANYLSMTKKN 120
           ITSLHGNIEDEFESLCIETQVG ILDNV+QLLEEQ LDPLYSKKTNIMDIANYLSMTKKN
Sbjct: 61  ITSLHGNIEDEFESLCIETQVGPILDNVEQLLEEQGLDPLYSKKTNIMDIANYLSMTKKN 120

Query: 121 EIQHLKDMLKTSEEQNRHIQARIDVLKKGVEDASGMADAVEKLRIRGRASATDGDNGTCD 180
           EIQ LKDMLKT+EEQN+H+QARID+L+KGV+D SG ADAVEKL  R RA ATDG N TCD
Sbjct: 121 EIQRLKDMLKTAEEQNQHVQARIDLLRKGVQDVSGTADAVEKLWNRCRAYATDGVNETCD 180

[Close]

BLAST of Carg13145 vs. TAIR10
Match: AT4G19350.1 (embryo defective 3006)

HSP 1 Score: 152.9 bits (385), Expect = 1.9e-37
Identity = 84/163 (51.53%), Postives = 114/163 (69.94%), Query Frame = 0


Query: 1   MEKKHEISTPLNSSLIDLKKSFKLAVRSLLTSCSREEFRECFSGFTTVEQENLHRLFVQV 60
           MEK    +    S    LKKSFK  +R LLT+CS+++F + FS F+  EQE L +L+ +V
Sbjct: 1   MEKPGHETDIAGSRRTHLKKSFKSTLRHLLTACSKQDFVDIFSKFSGAEQELLFQLYTRV 60

Query: 61  ITSLHGNIEDEFESLCIETQVGRILDNVQQLLEEQDLDPLYSKKTNIMDIANYLSMTKKN 120
           + +LH  IE+EF+  C ETQVG ILD V++L+EEQ LDPL+S KT++M IA  L+ +KKN
Sbjct: 61  VVNLHQTIEEEFDEQCHETQVGPILDTVEELVEEQSLDPLFSDKTDVMAIAYDLTTSKKN 120

Query: 121 EIQHLKDMLKTSEEQNRHIQARIDVLKKGVEDASGMADAVEKL 164
           EIQ L  +L+ +EEQNR  +ARI +LKK  +D SG AD +EKL
Sbjct: 121 EIQKLTVLLQRAEEQNRQKEARISMLKKQTQDLSGTADRIEKL 163

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BLAST of Carg13145 vs. TrEMBL
Match: tr|A0A1S3BTB0|A0A1S3BTB0_CUCME (uncharacterized protein LOC103493030 OS=Cucumis melo OX=3656 GN=LOC103493030 PE=4 SV=1)

HSP 1 Score: 275.0 bits (702), Expect = 1.2e-70
Identity = 143/180 (79.44%), Postives = 158/180 (87.78%), Query Frame = 0


Query: 1   MEKKHEISTPLNSSLIDLKKSFKLAVRSLLTSCSREEFRECFSGFTTVEQENLHRLFVQV 60
           M KKHEI TP+ S  IDLKKSFKLAVRSLLTSCSREEFRECFS FTT EQ+ LHRLF+QV
Sbjct: 1   MGKKHEIDTPVTSRQIDLKKSFKLAVRSLLTSCSREEFRECFSRFTTAEQDYLHRLFIQV 60

Query: 61  ITSLHGNIEDEFESLCIETQVGRILDNVQQLLEEQDLDPLYSKKTNIMDIANYLSMTKKN 120
           ITSLHGNIEDEFESLC+ETQVG +LDNV+QLLEEQDLDPLYSKKTNI++I+N+LSM K  
Sbjct: 61  ITSLHGNIEDEFESLCVETQVGLVLDNVEQLLEEQDLDPLYSKKTNIVEISNFLSMKKME 120

Query: 121 EIQHLKDMLKTSEEQNRHIQARIDVLKKGVEDASGMADAVEKLRIRGRASATDGDNGTCD 180
           EIQHLKDMLKT+EEQNR IQ RIDVL+KGV+DASGMADAV+KLR   R+  TDG N T D
Sbjct: 121 EIQHLKDMLKTAEEQNRVIQGRIDVLRKGVQDASGMADAVKKLRSECRSYGTDGVNETLD 180

[Close]

BLAST of Carg13145 vs. TrEMBL
Match: tr|A0A0A0KV94|A0A0A0KV94_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G056590 PE=4 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 4.4e-65
Identity = 131/164 (79.88%), Postives = 147/164 (89.63%), Query Frame = 0


Query: 1   MEKKHEISTPLNSSLIDLKKSFKLAVRSLLTSCSREEFRECFSGFTTVEQENLHRLFVQV 60
           M +KHE+  P++S  IDLKKSFKLAVR LLTSCSREEFRECFS FTT EQ+ LHRLF+QV
Sbjct: 1   MGEKHELDAPVSSRQIDLKKSFKLAVRPLLTSCSREEFRECFSRFTTAEQDYLHRLFIQV 60

Query: 61  ITSLHGNIEDEFESLCIETQVGRILDNVQQLLEEQDLDPLYSKKTNIMDIANYLSMTKKN 120
           ITSLHGNIEDEFESLC+ETQVG + DNV+QLLEEQDLDPLYSKKTNI++I N+LSMTKK 
Sbjct: 61  ITSLHGNIEDEFESLCVETQVGLVFDNVEQLLEEQDLDPLYSKKTNIVEIYNFLSMTKKE 120

Query: 121 EIQHLKDMLKTSEEQNRHIQARIDVLKKGVEDASGMADAVEKLR 165
           EIQHLKDMLKT+EEQN  IQ RID L+KGV+DASGMADAV+KLR
Sbjct: 121 EIQHLKDMLKTAEEQNWVIQGRIDDLRKGVQDASGMADAVKKLR 164

[Close]

BLAST of Carg13145 vs. TrEMBL
Match: tr|A0A2I4FRI1|A0A2I4FRI1_9ROSI (uncharacterized protein LOC109001427 OS=Juglans regia OX=51240 GN=LOC109001427 PE=4 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 7.8e-46
Identity = 102/180 (56.67%), Postives = 135/180 (75.00%), Query Frame = 0


Query: 1   MEKKHEI-----STPLNSSLIDLKKSFKLAVRSLLTSCSREEFRECFSGFTTVEQENLHR 60
           MEK  E+     + P+ +   DLKKSFKLA+RSLLT+CS +EF   F  FT  EQ+ LHR
Sbjct: 1   MEKSGEVEGPSSTLPMGTRHSDLKKSFKLALRSLLTACSNQEFCNAFPRFTAAEQQLLHR 60

Query: 61  LFVQVITSLHGNIEDEFESLCIETQVGRILDNVQQLLEEQDLDPLYSKKTNIMDIANYLS 120
           LF+QV+TSLH NIEDEFESLC+ETQVG  LD+++QL+EEQ LDPL+  KTN+MD+A  LS
Sbjct: 61  LFIQVVTSLHENIEDEFESLCLETQVGATLDSIEQLVEEQSLDPLFLNKTNVMDVAGNLS 120

Query: 121 MTKKNEIQHLKDMLKTSEEQNRHIQARIDVLKKGVEDASGMADAVEKLRIRGRASATDGD 176
           + KKNEIQ L  ML  +E++N  I+AR++ L++G++D SGMADA+EKLR R  + A + +
Sbjct: 121 IEKKNEIQFLMGMLDMAEKRNSLIRARVEHLRQGMQDVSGMADALEKLRSRSLSYACNSN 180

[Close]

BLAST of Carg13145 vs. TrEMBL
Match: tr|A0A251P1S2|A0A251P1S2_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G013300 PE=4 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 9.5e-44
Identity = 91/149 (61.07%), Postives = 123/149 (82.55%), Query Frame = 0


Query: 16  IDLKKSFKLAVRSLLTSCSREEFRECFSGFTTVEQENLHRLFVQVITSLHGNIEDEFESL 75
           +++KKSFK  +RSLLT CS++EF + F  FTT EQE LHR+F+QVITSLHGN+EDEF+S+
Sbjct: 6   MEMKKSFKFCIRSLLTPCSKQEFCQAFPNFTTAEQERLHRMFIQVITSLHGNVEDEFQSV 65

Query: 76  CIETQVGRILDNVQQLLEEQDLDPLYSKKTNIMDIANYLSMTKKNEIQHLKDMLKTSEEQ 135
           C+ETQVG  LD V+QL+EEQ LD L+S KTN+MD+A+ LS  KK++IQ+L  ML+T+EEQ
Sbjct: 66  CLETQVGTALDTVEQLVEEQALDRLFSDKTNVMDVAHDLSTMKKDQIQYLTKMLETAEEQ 125

Query: 136 NRHIQARIDVLKKGVEDASGMADAVEKLR 165
           N+ ++ R+++LKK   D SGMA+AVE+LR
Sbjct: 126 NQCLRDRVELLKKERLDVSGMANAVERLR 154

[Close]

BLAST of Carg13145 vs. TrEMBL
Match: tr|A0A2P4MZI8|A0A2P4MZI8_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_15638 PE=4 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 9.5e-44
Identity = 95/159 (59.75%), Postives = 123/159 (77.36%), Query Frame = 0


Query: 18  LKKSFKLAVRSLLTSCSREEFRECFSGFTTVEQENLHRLFVQVITSLHGNIEDEFESLCI 77
           +KKSF LA+R LLT+CS + F   F  F+T EQ++LHRLF+QV+TSLH +IEDEFESLC+
Sbjct: 1   MKKSFNLALRPLLTACSNQGFCSAFPNFSTEEQKHLHRLFLQVLTSLHESIEDEFESLCL 60

Query: 78  ETQVGRILDNVQQLLEEQDLDPLYSKKTNIMDIANYLSMTKKNEIQHLKDMLKTSEEQNR 137
           ETQVG  LD V+QL+EEQ LDPL+S KTN+MD+A  LS  K++EIQ+L  ML   E+QNR
Sbjct: 61  ETQVGAALDTVEQLVEEQSLDPLFSDKTNVMDVAQNLSSAKRSEIQYLTGMLDMVEDQNR 120

Query: 138 HIQARIDVLKKGVEDASGMADAVEKLRIRGRASATDGDN 177
           HI+AR+++ +K +EDA  +ADAVEKLR R  +  T G N
Sbjct: 121 HIRARVEICRKEMEDAKRLADAVEKLRSRSLSYGTLGSN 159

The following BLAST results are available for this feature:

BLAST of Carg13145 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022941729.1	1.2e-90	97.79	uncharacterized protein LOC111447007 [Cucurbita moschata]	[more]
XP_023527503.1	3.3e-88	95.03	uncharacterized protein LOC111790708 [Cucurbita pepo subsp. pepo]	[more]
XP_022982967.1	2.8e-87	93.92	uncharacterized protein LOC111481654 [Cucurbita maxima]	[more]
XP_022931290.1	5.4e-75	83.71	uncharacterized protein LOC111437518 isoform X1 [Cucurbita moschata] >XP_0235528...	[more]
XP_022136388.1	9.2e-75	83.89	uncharacterized protein LOC111008110 [Momordica charantia]	[more]

BLAST of Carg13145 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G19350.1	1.9e-37	51.53	embryo defective 3006	[more]

BLAST of Carg13145 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg13145 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BTB0\|A0A1S3BTB0_CUCME	1.2e-70	79.44	uncharacterized protein LOC103493030 OS=Cucumis melo OX=3656 GN=LOC103493030 PE=...	[more]
tr\|A0A0A0KV94\|A0A0A0KV94_CUCSA	4.4e-65	79.88	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G056590 PE=4 SV=1	[more]
tr\|A0A2I4FRI1\|A0A2I4FRI1_9ROSI	7.8e-46	56.67	uncharacterized protein LOC109001427 OS=Juglans regia OX=51240 GN=LOC109001427 P...	[more]
tr\|A0A251P1S2\|A0A251P1S2_PRUPE	9.5e-44	61.07	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G013300 PE=4 SV=1	[more]
tr\|A0A2P4MZI8\|A0A2P4MZI8_QUESU	9.5e-44	59.75	Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_15638 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0000818	nuclear MIS12/MIND complex

Vocabulary: **INTERPRO**
Term	Definition
IPR007128	PMF1/Nnf1

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0000818	nuclear MIS12/MIND complex
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg13145-RA	Carg13145-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 122..142
None	No IPR available	PANTHER	PTHR15459:SF3	HCG2044777-RELATED	coord: 12..161
IPR007128	Nuclear MIS12/MIND complex subunit PMF1/Nnf1	PFAM	PF03980	Nnf1	coord: 52..144 e-value: 6.2E-7 score: 29.7
IPR007128	Nuclear MIS12/MIND complex subunit PMF1/Nnf1	PANTHER	PTHR15459	FAMILY NOT NAMED	coord: 12..161

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg13145	Cla005458	Watermelon (97103) v1	carwmB0043
Carg13145	Csa4G056590	Cucumber (Chinese Long) v2	carcuB0047
Carg13145	MELO3C016218	Melon (DHL92) v3.5.1	carmeB0042
Carg13145	ClCG07G011120	Watermelon (Charleston Gray)	carwcgB0046
Carg13145	CSPI04G06920	Wild cucumber (PI 183967)	carcpiB0051
Carg13145	Cucsa.228800	Cucumber (Gy14) v1	carcgyB0053
Carg13145	CmaCh04G006000	Cucurbita maxima (Rimu)	carcmaB0055
Carg13145	CmaCh16G005060	Cucurbita maxima (Rimu)	carcmaB0052
Carg13145	CmoCh04G006420	Cucurbita moschata (Rifu)	carcmoB0058
Carg13145	CmoCh16G005540	Cucurbita moschata (Rifu)	carcmoB0054
Carg13145	Lsi07G007750	Bottle gourd (USVL1VR-Ls)	carlsiB043
Carg13145	Cp4.1LG14g02780	Cucurbita pepo (Zucchini)	carcpeB0057
Carg13145	Cp4.1LG01g01260	Cucurbita pepo (Zucchini)	carcpeB0061
Carg13145	CsGy4G006850	Cucumber (Gy14) v2	carcgybB0047
Carg13145	MELO3C016218.2	Melon (DHL92) v3.6.1	carmedB0047
Carg13145	CsaV3_4G007130	Cucumber (Chinese Long) v3	carcucB0052
Carg13145	Cla97C07G137850	Watermelon (97103) v2	carwmbB0043
Carg13145	Bhi01G002358	Wax gourd	carwgoB0053

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg13145	Carg11422	Silver-seed gourd	carcarB050

The following block(s) are covering this gene:


Gene	Organism	Block
Carg13145	Melon (DHL92) v3.5.1	carmeB0044
Carg13145	Melon (DHL92) v3.6.1	carmedB0043
Carg13145	Melon (DHL92) v3.6.1	carmedB0045